CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029039	Salmonella enterica strain CFSAN045764 chromosome, complete genome	2 crisprs	PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,DEDDh,DinG,RT	1	19	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029039_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029039_1

953652-954718

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

17 spacers

cas8e,cse2gr11,cas7

The CRISPR arrays of CP029039_1

>merge|CP029039|1|953652-954718|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGTCAGGCGATCATATTCGCGTGGATTGACGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCAGGTTTCGCGTCATCTGACGTTGGTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCGCAATTGAGCGTTTCTCGGCTGATATCGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCGAGTAGCTCAACTGGGGGATATCCCCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGTGCGGCAGGCGTTCCATGCCTCCATAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCACCTTTCCCCACAATGTCAGAGGTTATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGACCACTGTCCGCAATCTGTCGGCGAACTACCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGATCCCCCAGCGTGAATATCTGGGAGTGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTGAATTGCTAAATAAAGCGGCCTGCGCTGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGACGATTTATGAAATCCACCCGGTAAAAATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATGATCCGTGAGGGGGTGGCAACGCACGCGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGACAGGTAACAGCGTGCTTGGTTCTGGTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTGAGTATCAACTCAACCTTATTGAAGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATAATTGCGCAGTTTTAAATGCCTGAATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACAGTCACCGGTGATGACGGCGTCGTCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCAAATGAGCCAGGCGGACAGGCATTTTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCATACCATTTCCACTGGCGCAACGATTTTTGGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP029039|1|1|953652-954657|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTCAGGCGATCATATTCGCGTGGATTGACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCGCAATTGAGCGTTTCTCGGCTGATATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGAGTAGCTCAACTGGGGGATATCCCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCACCTTTCCCCACAATGTCAGAGGTTATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCACTGTCCGCAATCTGTCGGCGAACTACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATCCCCCAGCGTGAATATCTGGGAGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTATGAAATCCACCCGGTAAAAATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATCCGTGAGGGGGTGGCAACGCACGCGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAGTATCAACTCAACCTTATTGAAGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATAATTGCGCAGTTTTAAATGCCTGAATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACAGTCACCGGTGATGACGGCGTCGTCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAAATGAGCCAGGCGGACAGGCATTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP029039|1|1|953652-954718|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTCAGGCGATCATATTCGCGTGGATTGACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCGCAATTGAGCGTTTCTCGGCTGATATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGAGTAGCTCAACTGGGGGATATCCCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCACCTTTCCCCACAATGTCAGAGGTTATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCACTGTCCGCAATCTGTCGGCGAACTACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATCCCCCAGCGTGAATATCTGGGAGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTATGAAATCCACCCGGTAAAAATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATCCGTGAGGGGGTGGCAACGCACGCGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAGTATCAACTCAACCTTATTGAAGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATAATTGCGCAGTTTTAAATGCCTGAATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACAGTCACCGGTGATGACGGCGTCGTCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAAATGAGCCAGGCGGACAGGCATTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATACCATTTCCACTGGCGCAACGATTTTTG
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP029039|1|1|953652-954718|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTCAGGCGATCATATTCGCGTGGATTGACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCGCAATTGAGCGTTTCTCGGCTGATATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGAGTAGCTCAACTGGGGGATATCCCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCACCTTTCCCCACAATGTCAGAGGTTATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCACTGTCCGCAATCTGTCGGCGAACTACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGATCCCCCAGCGTGAATATCTGGGAGTGTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGATTTATGAAATCCACCCGGTAAAAATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGATCCGTGAGGGGGTGGCAACGCACGCGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAGTATCAACTCAACCTTATTGAAGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATAATTGCGCAGTTTTAAATGCCTGAATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACAGTCACCGGTGATGACGGCGTCGTCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCAAATGAGCCAGGCGGACAGGCATTTTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCATACCATTTCCACTGGCGCAACGATTTTTG
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP029039.1\|AWE28355.1\|958297_960010_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP029039.1\|AWE28343.1\|939461_940604_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP029039.1\|AWE28350.1\|951249_952548_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP029039.1\|AWE28351.1\|952683_953355_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP029039.1\|AWE28359.1\|966536_967085_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP029039.1\|AWE28356.1\|960085_960820_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP029039.1\|AWE28344.1\|940647_943404_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP029039.1\|AWE31838.1\|955991_956162_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP029039.1\|AWE28345.1\|943461_944757_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP029039.1\|AWE28353.1\|955700_956063_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP029039.1\|AWE28352.1\|954815_955613_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP029039.1\|AWE28358.1\|964980_966540_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP029039.1\|AWE28342.1\|938043_939384_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP029039.1\|AWE28354.1\|956498_958298_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP029039.1\|AWE28347.1\|947127_947484_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP029039.1\|AWE28349.1\|949529_951167_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP029039.1\|AWE28360.1\|967098_968157_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP029039.1\|AWE28348.1\|948501_949302_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP029039.1\|AWE28357.1\|960907_961861_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP029039.1\|AWE28346.1\|944808_947043_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797

Protein	Function_ID	Function_description	E-value
CP029039.1\|AWE28355.1\|958297_960010_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP029039.1\|AWE28343.1\|939461_940604_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP029039.1\|AWE28350.1\|951249_952548_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP029039.1\|AWE28351.1\|952683_953355_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.75351e-154
CP029039.1\|AWE28359.1\|966536_967085_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.97309e-33
CP029039.1\|AWE28356.1\|960085_960820_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.84911e-136
CP029039.1\|AWE28344.1\|940647_943404_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP029039.1\|AWE28345.1\|943461_944757_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP029039.1\|AWE28353.1\|955700_956063_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.66978e-58
CP029039.1\|AWE28352.1\|954815_955613_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	4.02249e-102
CP029039.1\|AWE28358.1\|964980_966540_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.04216e-172
CP029039.1\|AWE28342.1\|938043_939384_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP029039.1\|AWE28354.1\|956498_958298_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP029039.1\|AWE28347.1\|947127_947484_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.40983e-20
CP029039.1\|AWE28349.1\|949529_951167_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP029039.1\|AWE28360.1\|967098_968157_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.89551e-135
CP029039.1\|AWE28348.1\|948501_949302_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.58847e-158
CP029039.1\|AWE28357.1\|960907_961861_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029039.1\|AWE28346.1\|944808_947043_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0

>CP029039.1|AWE28351.1|952683_953355_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVCCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP029039.1|AWE28350.1|951249_952548_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP029039.1|AWE28349.1|949529_951167_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP029039.1|AWE28348.1|948501_949302_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNYQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP029039.1|AWE28347.1|947127_947484_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAGSRLLALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP029039.1|AWE28346.1|944808_947043_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP029039.1|AWE28345.1|943461_944757_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPRLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP029039.1|AWE28344.1|940647_943404_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP029039.1|AWE28343.1|939461_940604_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP029039.1|AWE28342.1|938043_939384_+|glucarate-dehydratase
MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>CP029039.1|AWE28352.1|954815_955613_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGVGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSAKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPLTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP029039.1|AWE28353.1|955700_956063_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>CP029039.1|AWE31838.1|955991_956162_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP029039.1|AWE28354.1|956498_958298_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKRLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQAGKDFDNKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRDSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKEIVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP029039.1|AWE28355.1|958297_960010_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTTYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP029039.1|AWE28356.1|960085_960820_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETSAQLETLTAEERVVWALKNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP029039.1|AWE28357.1|960907_961861_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP029039.1|AWE28358.1|964980_966540_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNGDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP029039.1|AWE28359.1|966536_967085_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>CP029039.1|AWE28360.1|967098_968157_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA

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Crispr_ID: CP029039_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029039_2

970853-972345

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

24 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP029039_2

>merge|CP029039|2|970853-972345|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGTCGCGGTGTGAGCGGAAAGCCTGGCGAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAGCTCGTCAGGGAGGGAAAGGTTATCCGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAGGTAGCGCCCAATGGATGTTGGGGGAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTATCTCTCCGTTATGTGTCGGACACCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACAACATTAATAAAAACCGGTTTAAGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGTTGTTTTTCTTGCGGAGCAGGACGGCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCCGATCCACATCAGCAGCCAGCTCTTTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACCAAAGCTCGATATCAGTCAATTATGGCCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTATCTCTCCGTTATGTGTCGGACACCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGTCACGATTGTTCACCCCAAAAGCGGACAGTGTTCCCCGCGCCAGCGGGGATAAACCGCACTCTGCGTAATGGCAAATTCCAATTCTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGACACAATAGCGAAATCAATTACTGAAAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACGCCAATTATACATTGGCTCTATATGAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCCCGGCCGAGGCCGTGACGGTGAAACAGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTACAGAAAAAAGAGGCGTCGCATGTGGCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCCTCACAGCGGCGCCCGCTGGTCACGACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCGCCGTCTGTCACACCTGTTATGTAATTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATCCACCAGCAATCAGGGGCCGGATATACAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAACAGTGCATAATTCGCAAAATTTGCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCCACAGGACGTTGAGAACGGCTTTATACAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGAGCACTGCAACGGCGAACTGGCAATGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTATTTAGTTGATCTGAAGAATTCAGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGTGCAACCAGAAAGTATTAAAAAACCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAGGCCGACGGTGTGTACACCTCTAAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP029039|2|2|970853-972284|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTATCTCTCCGTTATGTGTCGGACACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACAACATTAATAAAAACCGGTTTAAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGATCCACATCAGCAGCCAGCTCTTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAAAGCTCGATATCAGTCAATTATGGCCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTATCTCTCCGTTATGTGTCGGACACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTCACGATTGTTCACCCCAAAAGCGGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTCTGCGTAATGGCAAATTCCAATTCTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACACAATAGCGAAATCAATTACTGAAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCAATTATACATTGGCTCTATATGAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCTCACAGCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGTCTGTCACACCTGTTATGTAATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCACCAGCAATCAGGGGCCGGATATACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACAGTGCATAATTCGCAAAATTTGCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCCACAGGACGTTGAGAACGGCTTTATACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGAGCACTGCAACGGCGAACTGGCAATGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTATTTAGTTGATCTGAAGAATTCAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGCAACCAGAAAGTATTAAAAAACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP029039|2|2|970853-972345|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTATCTCTCCGTTATGTGTCGGACACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACAACATTAATAAAAACCGGTTTAAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGATCCACATCAGCAGCCAGCTCTTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAAAGCTCGATATCAGTCAATTATGGCCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTATCTCTCCGTTATGTGTCGGACACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTCACGATTGTTCACCCCAAAAGCGGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTCTGCGTAATGGCAAATTCCAATTCTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACACAATAGCGAAATCAATTACTGAAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCAATTATACATTGGCTCTATATGAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCTCACAGCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGTCTGTCACACCTGTTATGTAATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCACCAGCAATCAGGGGCCGGATATACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACAGTGCATAATTCGCAAAATTTGCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCCACAGGACGTTGAGAACGGCTTTATACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGAGCACTGCAACGGCGAACTGGCAATGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTATTTAGTTGATCTGAAGAATTCAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGCAACCAGAAAGTATTAAAAAACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>CP029039|2|2|970853-972345|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTATCTCTCCGTTATGTGTCGGACACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACAACATTAATAAAAACCGGTTTAAGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCCGATCCACATCAGCAGCCAGCTCTTTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCAAAGCTCGATATCAGTCAATTATGGCCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTATCTCTCCGTTATGTGTCGGACACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGTCACGATTGTTCACCCCAAAAGCGGACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTCTGCGTAATGGCAAATTCCAATTCTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGACACAATAGCGAAATCAATTACTGAAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACGCCAATTATACATTGGCTCTATATGAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCCTCACAGCGGCGCCCGCTGGTCACGACCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGCCGTCTGTCACACCTGTTATGTAATTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCACCAGCAATCAGGGGCCGGATATACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACAGTGCATAATTCGCAAAATTTGCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCCACAGGACGTTGAGAACGGCTTTATACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGAGCACTGCAACGGCGAACTGGCAATGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTATTTAGTTGATCTGAAGAATTCAGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGCAACCAGAAAGTATTAAAAAACCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAAGGCCGACGGTGTGTACACCTCTAAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029039.1\|AWE28362.1\|968895_969546_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP029039.1\|AWE28366.1\|973656_974565_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP029039.1\|AWE28371.1\|977500_978211_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029039.1\|AWE28358.1\|964980_966540_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP029039.1\|AWE28359.1\|966536_967085_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP029039.1\|AWE28370.1\|977170_977482_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029039.1\|AWE28367.1\|974574_976014_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP029039.1\|AWE28372.1\|978210_978690_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029039.1\|AWE28355.1\|958297_960010_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP029039.1\|AWE28357.1\|960907_961861_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP029039.1\|AWE28374.1\|979716_980478_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029039.1\|AWE28363.1\|969542_970463_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029039.1\|AWE28361.1\|968167_968914_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029039.1\|AWE28373.1\|978686_979736_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP029039.1\|AWE28356.1\|960085_960820_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP029039.1\|AWE28360.1\|967098_968157_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP029039.1\|AWE28364.1\|970462_970756_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP029039.1\|AWE28369.1\|976623_976980_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP029039.1\|AWE28365.1\|972359_973406_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP029039.1\|AWE28368.1\|976000_976606_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
CP029039.1\|AWE28362.1\|968895_969546_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.41953e-75
CP029039.1\|AWE28366.1\|973656_974565_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029039.1\|AWE28371.1\|977500_978211_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
CP029039.1\|AWE28358.1\|964980_966540_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.04216e-172
CP029039.1\|AWE28359.1\|966536_967085_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.97309e-33
CP029039.1\|AWE28370.1\|977170_977482_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP029039.1\|AWE28367.1\|974574_976014_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029039.1\|AWE28372.1\|978210_978690_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP029039.1\|AWE28355.1\|958297_960010_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP029039.1\|AWE28357.1\|960907_961861_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP029039.1\|AWE28374.1\|979716_980478_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP029039.1\|AWE28363.1\|969542_970463_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP029039.1\|AWE28361.1\|968167_968914_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.18709e-48
CP029039.1\|AWE28373.1\|978686_979736_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029039.1\|AWE28356.1\|960085_960820_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.84911e-136
CP029039.1\|AWE28360.1\|967098_968157_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.89551e-135
CP029039.1\|AWE28364.1\|970462_970756_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP029039.1\|AWE28369.1\|976623_976980_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.58826e-48
CP029039.1\|AWE28365.1\|972359_973406_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029039.1\|AWE28368.1\|976000_976606_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.53293e-145

>CP029039.1|AWE28364.1|970462_970756_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP029039.1|AWE28363.1|969542_970463_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP029039.1|AWE28362.1|968895_969546_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLVRQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINDPALFLQRLAQGYGKSRAFGCGMMMIKPGEDA
>CP029039.1|AWE28361.1|968167_968914_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGRAPDALREAYRQYQDKFNALRLPLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLSKEDACISQE
>CP029039.1|AWE28360.1|967098_968157_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILVESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMKDVLDFICA
>CP029039.1|AWE28359.1|966536_967085_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKAAWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>CP029039.1|AWE28358.1|964980_966540_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNGDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRGALKEAWFANAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP029039.1|AWE28357.1|960907_961861_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDLLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP029039.1|AWE28356.1|960085_960820_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETSAQLETLTAEERVVWALKNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP029039.1|AWE28355.1|958297_960010_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTTYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP029039.1|AWE28365.1|972359_973406_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALVIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP029039.1|AWE28366.1|973656_974565_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP029039.1|AWE28367.1|974574_976014_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEAYAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP029039.1|AWE28368.1|976000_976606_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCCDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP029039.1|AWE28369.1|976623_976980_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGMPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP029039.1|AWE28370.1|977170_977482_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP029039.1|AWE28371.1|977500_978211_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP029039.1|AWE28372.1|978210_978690_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP029039.1|AWE28373.1|978686_979736_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP029039.1|AWE28374.1|979716_980478_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029039_2	2.1\|970882\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	970882-970913	32	CP029039.1	3250336-3250367	1	0.969

1. spacer 2.1|970882|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to position: 3250336-3250367, mismatch: 1, identity: 0.969

gtcgcggtgtgagcggaaagcctggcgaacag	CRISPR spacer
gtcgcggtgtgagcggaaaggctggcgaacag	Protospacer
******************** ***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029039_2	2.11\|971492\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971492-971523	32	NZ_LN890526	Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence	41461-41492	0	1.0
CP029039_1	1.5\|953925\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953925-953956	32	NC_028696	Salmonella phage SEN22, complete genome	23090-23121	5	0.844
CP029039_1	1.11\|954292\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954292-954323	32	NZ_CP048637	Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence	18568-18599	5	0.844
CP029039_1	1.1\|953681\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953681-953712	32	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	46194-46225	7	0.781
CP029039_1	1.5\|953925\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953925-953956	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32766-32797	7	0.781
CP029039_1	1.13\|954414\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954414-954445	32	NZ_CP043769	Enterobacter hormaechei strain EB_P9_L5_03.19 plasmid unnamed2, complete sequence	1964-1995	7	0.781
CP029039_2	2.5\|971126\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971126-971157	32	MK448714	Streptococcus phage Javan241, complete genome	7328-7359	7	0.781
CP029039_2	2.7\|971248\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971248-971279	32	MK416008	Klebsiella phage ST405-OXA48phi1.3, complete genome	8038-8069	7	0.781
CP029039_2	2.8\|971309\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971309-971340	32	KJ803031	Dinoroseobacter phage vBDshPR2C, complete genome	12107-12138	7	0.781
CP029039_2	2.14\|971675\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971675-971706	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	173164-173195	7	0.781
CP029039_1	1.2\|953742\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953742-953773	32	AP013464	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S31-C32	33805-33836	8	0.75
CP029039_1	1.2\|953742\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953742-953773	32	AP013465	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58	16862-16893	8	0.75
CP029039_1	1.5\|953925\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953925-953956	32	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	140243-140274	8	0.75
CP029039_1	1.14\|954475\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954475-954506	32	MT254578	Bacillus phage Izhevsk, complete genome	123536-123567	8	0.75
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	372347-372378	8	0.75
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	NZ_CP013856	Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence	73912-73943	8	0.75
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	NZ_CP013739	Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence	155188-155219	8	0.75
CP029039_2	2.3\|971004\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971004-971035	32	MH572490	Microviridae sp. isolate SD_HC_1, complete genome	89-120	8	0.75
CP029039_2	2.14\|971675\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971675-971706	32	KM659097	Paracoccus yeei plasmid pLM20P5, complete sequence	11561-11592	8	0.75
CP029039_2	2.14\|971675\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971675-971706	32	MH834622	Arthrobacter phage Noely, complete genome	3314-3345	8	0.75
CP029039_2	2.16\|971797\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971797-971828	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	535727-535758	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_KX426227	Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence	232381-232412	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	CP033569	Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence	60436-60467	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP033130	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence	160354-160385	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	CP033531	Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence	215228-215259	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP042557	Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence	291417-291448	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	55844-55875	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP029396	Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence	203946-203977	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP048828	Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence	69295-69326	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP032285	Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence	31684-31715	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP042365	Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence	218063-218094	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_MK134375	Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence	186944-186975	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP038010	Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence	26068-26099	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP043053	Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence	231073-231104	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_MH220285	Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence	142294-142325	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_MH220287	Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence	149531-149562	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_CP043309	Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence	101601-101632	8	0.75
CP029039_2	2.22\|972163\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	972163-972194	32	NZ_MH220286	Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence	114096-114127	8	0.75
CP029039_1	1.5\|953925\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953925-953956	32	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	253119-253150	9	0.719
CP029039_1	1.5\|953925\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953925-953956	32	NZ_MG825385	Escherichia coli strain 1107 plasmid p1107-111K, complete sequence	83426-83457	9	0.719
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1384432-1384463	9	0.719
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	215884-215915	9	0.719
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	15179-15210	9	0.719
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	MK972713	Salmonella phage SW5, complete genome	11646-11677	9	0.719
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	MK972714	Salmonella phage SW3, complete genome	11868-11899	9	0.719
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	NC_049460	Salmonella phage SI7, complete genome	2088-2119	9	0.719
CP029039_1	1.15\|954536\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954536-954567	32	MK937598	Microbacterium phage Celaena, complete genome	28656-28687	9	0.719
CP029039_2	2.1\|970882\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	970882-970913	32	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	256652-256683	9	0.719
CP029039_2	2.5\|971126\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971126-971157	32	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	502920-502951	9	0.719
CP029039_2	2.7\|971248\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971248-971279	32	MG893203	Vibrio phage VP06, complete genome	26226-26257	9	0.719
CP029039_2	2.14\|971675\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971675-971706	32	MF919512	Mycobacterium phage Klein, complete genome	101112-101143	9	0.719
CP029039_2	2.15\|971736\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971736-971767	32	NZ_CP016617	Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence	670891-670922	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	AP013386	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51	33360-33391	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	GU943014	Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence	17166-17197	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	AP014420	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, * SEQUENCING IN PROGRESS *, 5 ordered pieces	1557-1588	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	GU943017	Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence	8838-8869	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	AP014417	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S39-C59, * SEQUENCING IN PROGRESS *, 5 ordered pieces	32062-32093	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	GU943022	Uncultured phage MedDCM-OCT-S04-C890 genomic sequence	8801-8832	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	GU943013	Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence	10849-10880	9	0.719
CP029039_2	2.17\|971858\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971858-971889	32	AP014416	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S27-C110, * SEQUENCING IN PROGRESS *, 4 ordered pieces	9243-9274	9	0.719
CP029039_1	1.5\|953925\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	953925-953956	32	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	242206-242237	10	0.688
CP029039_1	1.11\|954292\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954292-954323	32	MT024867	Arthrobacter phage BlueFeather, complete genome	10238-10269	10	0.688
CP029039_1	1.14\|954475\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954475-954506	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	131245-131276	10	0.688
CP029039_1	1.16\|954597\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	954597-954628	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	14058-14089	10	0.688
CP029039_2	2.5\|971126\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971126-971157	32	NC_018493	Bacillus cereus FRI-35 plasmid p02, complete sequence	11521-11552	10	0.688
CP029039_2	2.14\|971675\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971675-971706	32	NZ_CP040821	Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence	111697-111728	10	0.688
CP029039_2	2.14\|971675\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971675-971706	32	MN908686	Microbacterium phage Zepp, complete genome	30030-30061	10	0.688
CP029039_2	2.14\|971675\|32\|CP029039\|PILER-CR,CRISPRCasFinder,CRT	971675-971706	32	MT889377	Microbacterium phage Zayuliv, complete genome	30596-30627	10	0.688

1. spacer 2.11|971492|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN890526 (Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712385 plasmid 3, complete sequence) position: , mismatch: 0, identity: 1.0

cactctgcgtaatggcaaattccaattctttc	CRISPR spacer
cactctgcgtaatggcaaattccaattctttc	Protospacer
********************************

2. spacer 1.5|953925|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NC_028696 (Salmonella phage SEN22, complete genome) position: , mismatch: 5, identity: 0.844

gcggtgcggcaggcgttccatgcctccatagc	CRISPR spacer
gcggtgcggcaggcgttccaaccctccacaaa	Protospacer
********************  ******.*.

3. spacer 1.11|954292|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048637 (Rhizobium oryzihabitans strain M15 plasmid p5, complete sequence) position: , mismatch: 5, identity: 0.844

atgatccgtgagggggtggcaacgcacgcgtt	CRISPR spacer
atgatccgtgagggggaggcaacgccagcctg	Protospacer
**************** ********  ** *

4. spacer 1.1|953681|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 7, identity: 0.781

ggtcaggcgatcatattcgcgtggatt--gacga	CRISPR spacer
cgcaaggcgatcacattcgcgtcgatttcgac--	Protospacer
 *. *********.******** ****  ***

5. spacer 1.5|953925|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 7, identity: 0.781

gcggtgcggcaggcgttccatgc-ctccatagc	CRISPR spacer
gcggcgcggcaggcgttccaggcgatacaaaa-	Protospacer
****.*************** **  * ** *.

6. spacer 1.13|954414|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043769 (Enterobacter hormaechei strain EB_P9_L5_03.19 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

agtgagtatcaactcaaccttattgaagatat	CRISPR spacer
aataattatcaacacaaacttattgaagaact	Protospacer
*.*.* ******* *** ***********  *

7. spacer 2.5|971126|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MK448714 (Streptococcus phage Javan241, complete genome) position: , mismatch: 7, identity: 0.781

aaaacaacattaataaaaaccggtttaagcgc	CRISPR spacer
ataacaacattaataaaatccgcttcacgttc	Protospacer
* **************** *** **.* *. *

8. spacer 2.7|971248|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MK416008 (Klebsiella phage ST405-OXA48phi1.3, complete genome) position: , mismatch: 7, identity: 0.781

--atccgatccacatcagcagccagctctttaaa	CRISPR spacer
tcatcc--tccggatcagcagccagctctttgcg	Protospacer
  ****  ***. ******************. .

9. spacer 2.8|971309|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to KJ803031 (Dinoroseobacter phage vBDshPR2C, complete genome) position: , mismatch: 7, identity: 0.781

accaaagctcgatatcagtcaattatggccag--	CRISPR spacer
accaaagctcgatatcgggcaat--tggctgaac	Protospacer
****************.* ****  ****...

10. spacer 2.14|971675|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
gaccccgcccaggccgtgacggtgaatgcgaa	Protospacer
  *** *** ****************   ***

11. spacer 1.2|953742|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to AP013464 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S31-C32) position: , mismatch: 8, identity: 0.75

gttcaggtttcgcgtcatctgacgttggtaat	CRISPR spacer
gttctggttttgcgtcatctgacgcgctcgat	Protospacer
**** *****.*************.   ..**

12. spacer 1.2|953742|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to AP013465 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58) position: , mismatch: 8, identity: 0.75

gttcaggtttcgcgtcatctgacgttggtaat	CRISPR spacer
gttctggttttgcgtcatctgacgcgctcgat	Protospacer
**** *****.*************.   ..**

13. spacer 1.5|953925|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gcggtgcggcaggcgttccatgcctccatagc	CRISPR spacer
gagtcgcggcaggcgttccaggcatccaggac	Protospacer
* * .*************** ** **** ..*

14. spacer 1.14|954475|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MT254578 (Bacillus phage Izhevsk, complete genome) position: , mismatch: 8, identity: 0.75

aaataattgcgcagttttaaatgcctgaatat	CRISPR spacer
taataattgagcagttttaagtgcttctaagt	Protospacer
 ******** **********.***.*  * .*

15. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
gcgcccgcaccggtgatgacggcgacgccgcc	Protospacer
 *.*   ***************** **.***.

16. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013856 (Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence) position: , mismatch: 8, identity: 0.75

-tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
ggcac-tccacctgcgatgacggcgtcgtcgtc	Protospacer
  ***  .**** *.****************..

17. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013739 (Streptomyces globisporus C-1027 plasmid SGLP1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
gccgtgtcaccgttgatcacggcgtcgttgtt	Protospacer
 *   ******* **** **********.*.*

18. spacer 2.3|971004|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MH572490 (Microviridae sp. isolate SD_HC_1, complete genome) position: , mismatch: 8, identity: 0.75

gtaggtagcgcccaatggatgttgggggaaat	CRISPR spacer
gcatgatgcgcccaatgaatgttggggcaatc	Protospacer
*.* *  **********.********* ** .

19. spacer 2.14|971675|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to KM659097 (Paracoccus yeei plasmid pLM20P5, complete sequence) position: , mismatch: 8, identity: 0.75

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
gtcccggccgagggcgggacggtgctgcggac	Protospacer
 ************ ** *******  .*.**

20. spacer 2.14|971675|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MH834622 (Arthrobacter phage Noely, complete genome) position: , mismatch: 8, identity: 0.75

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
gccccggacggggccgtgacggtgacgcccaa	Protospacer
 .***** **.************** .*  **

21. spacer 2.16|971797|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

ggcctcaca-gcggcgcccgctggtcacgacca	CRISPR spacer
-gttgagcaggcggcgcccgctggcctcgacca	Protospacer
 *..  .** **************.* ******

22. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX426227 (Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

23. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to CP033569 (Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

24. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033130 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

25. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to CP033531 (Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

26. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042557 (Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

27. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

28. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029396 (Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

29. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048828 (Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

30. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032285 (Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

31. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042365 (Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

32. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK134375 (Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

33. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038010 (Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

34. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043053 (Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

35. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220285 (Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

36. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220287 (Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

37. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043309 (Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

38. spacer 2.22|972163|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220286 (Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence) position: , mismatch: 8, identity: 0.75

gaattatttagttgatctgaagaattcaggaa	CRISPR spacer
atacgaatgagttcatctgaagaattcacgaa	Protospacer
. *. * * **** ************** ***

39. spacer 1.5|953925|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 9, identity: 0.719

gcggtgcggcaggcgttccatgcctccatagc	CRISPR spacer
gtctggcggcaggcgttccaggcctccagctg	Protospacer
*.   *************** *******

40. spacer 1.5|953925|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG825385 (Escherichia coli strain 1107 plasmid p1107-111K, complete sequence) position: , mismatch: 9, identity: 0.719

gcggtgcggcaggcgttccatgcctccatagc	CRISPR spacer
gcggcgcggcaggcgttccatgctctccagtt	Protospacer
****.******************...*  . .

41. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.719

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
gcgttctcaccggtgatgacggtctcgtcgag	Protospacer
 *..  ****************. ******

42. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 9, identity: 0.719

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
cggccctcaccggtgatgaccgcctcgtcgtg	Protospacer
. .*  ************** ** ******.

43. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 9, identity: 0.719

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
gttcgctcgccggtgatgacggcggcgtcgag	Protospacer
 . *. **.*************** *****

44. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 9, identity: 0.719

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
tggttatcaccggtaatgacggcgtcttcgaa	Protospacer
* .. .********.*********** ***

45. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 9, identity: 0.719

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
tggttatcaccggtaatgacggcgtcttcgaa	Protospacer
* .. .********.*********** ***

46. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 9, identity: 0.719

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
tggttatcaccggtaatgacggcgtcttcgaa	Protospacer
* .. .********.*********** ***

47. spacer 1.15|954536|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MK937598 (Microbacterium phage Celaena, complete genome) position: , mismatch: 9, identity: 0.719

tcacagtcaccggtgatgacggcgtcgtcgct	CRISPR spacer
tcaccgtcaccggcgatgacggccgtgcgccc	Protospacer
**** ********.*********  .*.  *.

48. spacer 2.1|970882|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcggtgtgagcggaaagcctggcgaacag	CRISPR spacer
acggcggcgtgagcggcaagcctggcgctttg	Protospacer
.. ****.******** **********  . *

49. spacer 2.5|971126|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 9, identity: 0.719

aaaacaacattaataaaaaccggtttaagcgc	CRISPR spacer
tatgaaacattattaaaaacaggtttaaaagg	Protospacer
 * . ******* ******* *******. *

50. spacer 2.7|971248|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MG893203 (Vibrio phage VP06, complete genome) position: , mismatch: 9, identity: 0.719

atccgatccacatcagcagccagctctttaaa	CRISPR spacer
gaagcagctacacccgcagccagctctttaaa	Protospacer
.    * *.***.* *****************

51. spacer 2.14|971675|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MF919512 (Mycobacterium phage Klein, complete genome) position: , mismatch: 9, identity: 0.719

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
atcccggccgatgacgtgacggtgggtgatat	Protospacer
 ********** * **********..  * *

52. spacer 2.15|971736|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016617 (Microvirga ossetica strain V5/3m plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gtacagaaaaaagaggcgtcgcatgtggcgat	CRISPR spacer
tgtcggcgcaaagatgcgtggcatgtggcgat	Protospacer
   *.* . ***** **** ************

53. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to AP013386 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C23-MedDCM-OCT-S37-C51) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

54. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to GU943014 (Uncultured phage MedDCM-OCT-S04-C1161 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

55. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to AP014420 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S43-C167, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

56. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to GU943017 (Uncultured phage MedDCM-OCT-S04-C1227 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

57. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to AP014417 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S39-C59, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

58. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to GU943022 (Uncultured phage MedDCM-OCT-S04-C890 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

59. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to GU943013 (Uncultured phage MedDCM-OCT-S04-C1035 genomic sequence) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

60. spacer 2.17|971858|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to AP014416 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C24-MedDCM-OCT-S27-C110, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 9, identity: 0.719

cccgccgtctgtcacacctgttatgtaattgt	CRISPR spacer
aaatctatctgtaacatctgttatgtaattgc	Protospacer
    *..***** ***.**************.

61. spacer 1.5|953925|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 10, identity: 0.688

gcggtgcggcaggcgttccatgcctccatagc	CRISPR spacer
gactggcggcagacgttccaggcctccagttg	Protospacer
*    *******.******* *******

62. spacer 1.11|954292|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MT024867 (Arthrobacter phage BlueFeather, complete genome) position: , mismatch: 10, identity: 0.688

atgatccgtgagggggtggcaacgcacgcgtt	CRISPR spacer
ccggcccgtgagggggtggaaactcacggacc	Protospacer
 .*..************** *** **** ...

63. spacer 1.14|954475|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 10, identity: 0.688

aaataattgcgcagttttaaatgcctgaatat	CRISPR spacer
aaataagtgcgcagtattaaatgtgcaagcca	Protospacer
****** ******** *******. ..*..

64. spacer 1.16|954597|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 10, identity: 0.688

cgcaaatgagccaggcggacaggcattttaat	CRISPR spacer
cgccaaagagccaggcggacaggtcggtgcgc	Protospacer
*** ** ****************.   *  ..

65. spacer 2.5|971126|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NC_018493 (Bacillus cereus FRI-35 plasmid p02, complete sequence) position: , mismatch: 10, identity: 0.688

aaaacaacattaataaaaaccggtttaagcgc	CRISPR spacer
gtaacaacattaataaaaaccagttcttatta	Protospacer
. *******************.***.  ..

66. spacer 2.14|971675|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040821 (Paraoceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence) position: , mismatch: 10, identity: 0.688

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
agcccggccgaggccgtggcggagatcggcga	Protospacer
  ****************.*** **   . .*

67. spacer 2.14|971675|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MN908686 (Microbacterium phage Zepp, complete genome) position: , mismatch: 10, identity: 0.688

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
atcccggccgaggacgtgccggtggtgatcga	Protospacer
 ************ **** *****. .   .*

68. spacer 2.14|971675|32|CP029039|PILER-CR,CRISPRCasFinder,CRT matches to MT889377 (Microbacterium phage Zayuliv, complete genome) position: , mismatch: 10, identity: 0.688

ctcccggccgaggccgtgacggtgaaacagaa	CRISPR spacer
atcccggccgaggacgtgccggtggtgatcga	Protospacer
 ************ **** *****. .   .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1141333 : 1207057

Salmonella_phage(89.58%)

capsid,head,lysis,integrase,tRNA,tail,plate,portal

attL 1142778:1142824|attR 1178070:1178116

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE28541.1\|1141333_1142575_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	8.5e-100	47.1
1142778:1142824	attL	NA	NA	NA	NA
AWE28542.1\|1142940_1144164_-	hypothetical protein	E5G6K9	Salmonella_phage	3.2e-75	38.9
AWE28543.1\|1144168_1145188_-\|integrase	integrase	A0A1S6L016	Salmonella_phage	5.6e-190	95.0
AWE28544.1\|1145189_1145822_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.2e-110	95.2
AWE28545.1\|1146217_1146727_+	hypothetical protein	A0A1S6L008	Salmonella_phage	3.6e-89	99.4
AWE31841.1\|1146734_1146935_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	3.2e-33	100.0
AWE28546.1\|1146898_1147240_+	hypothetical protein	A0A1S6L019	Salmonella_phage	4.6e-56	99.1
AWE28547.1\|1147307_1147541_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	1.1e-32	97.4
AWE28548.1\|1147540_1147768_+	hypothetical protein	A0A1S6L007	Salmonella_phage	9.6e-34	90.7
AWE28549.1\|1147764_1148619_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	3.0e-120	76.4
AWE28550.1\|1148615_1149446_+	hypothetical protein	A0A0M4RCP6	Salmonella_phage	9.3e-127	76.4
AWE28551.1\|1149442_1151818_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	92.3
AWE28552.1\|1151971_1152160_+	hypothetical protein	E5G6M0	Salmonella_phage	1.6e-26	96.8
AWE28553.1\|1152098_1152404_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AWE28554.1\|1152463_1153195_+	hypothetical protein	NA	NA	NA	NA
AWE28555.1\|1153569_1155336_+	hypothetical protein	D0UIM0	Aggregatibacter_phage	1.5e-78	34.3
AWE28556.1\|1155377_1156415_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	9.7e-182	90.4
AWE28557.1\|1156414_1158181_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	98.0
AWE28558.1\|1158323_1159157_+\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	5.0e-120	84.1
AWE28559.1\|1159173_1160241_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	4.8e-192	98.3
AWE28560.1\|1160244_1160895_+	hypothetical protein	E5G6M7	Salmonella_phage	1.7e-112	97.2
AWE28561.1\|1160990_1161455_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
AWE28562.1\|1161454_1161658_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AWE28563.1\|1161661_1161877_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
AWE28564.1\|1161857_1162367_+	lysozyme	A0A1S6KZY9	Salmonella_phage	1.1e-93	98.2
AWE28565.1\|1162371_1162749_+	peptidase	A0A1S6KZZ2	Salmonella_phage	1.7e-59	96.8
AWE28566.1\|1162748_1163174_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	5.5e-67	97.9
AWE28567.1\|1163103_1163307_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	4.8e-29	94.0
AWE28568.1\|1163269_1163701_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.7e-71	93.7
AWE28569.1\|1163693_1164140_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.4e-65	89.7
AWE28570.1\|1164208_1164787_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.9e-108	99.0
AWE28571.1\|1164783_1165143_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	1.8e-58	96.6
AWE28572.1\|1165129_1166038_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.6e-159	99.7
AWE28573.1\|1166030_1166636_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	8.3e-117	98.5
AWE28574.1\|1167923_1168541_+\|tail	phage tail protein	A0A1S6KZY8	Salmonella_phage	1.2e-110	97.9
AWE28575.1\|1168544_1169084_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	2.1e-95	97.8
AWE28576.1\|1169086_1169920_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	1.3e-157	97.8
AWE31842.1\|1169855_1170410_-	shikimate transporter	A0A1S6KZZ0	Salmonella_phage	1.7e-87	93.3
AWE28577.1\|1170439_1170997_+	recombinase family protein	A0A1S6L009	Salmonella_phage	7.2e-99	97.8
AWE28578.1\|1171099_1172272_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	5.7e-223	99.7
AWE28579.1\|1172281_1172797_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.3e-91	98.8
AWE28580.1\|1172851_1173154_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
AWE28581.1\|1173168_1173288_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
AWE28582.1\|1173280_1176088_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	98.6
AWE28583.1\|1176084_1176570_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
AWE28584.1\|1176566_1177667_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.5e-190	97.5
AWE28585.1\|1177735_1177954_+	levansucrase regulator	Q53ZE7	Salmonella_virus	1.0e-37	98.6
AWE31843.1\|1178505_1179669_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1178070:1178116	attR	NA	NA	NA	NA
AWE28586.1\|1179676_1181857_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
AWE28587.1\|1181853_1183263_-	type I secretion protein TolC	NA	NA	NA	NA
AWE28588.1\|1183327_1194802_-	biofilm-associated protein BapA	NA	NA	NA	NA
AWE31844.1\|1195416_1195899_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
AWE28589.1\|1196048_1196525_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AWE28590.1\|1196514_1196805_+	RnfH family protein	NA	NA	NA	NA
AWE28591.1\|1196966_1197305_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AWE28592.1\|1197453_1199115_-	DNA repair protein RecN	NA	NA	NA	NA
AWE28593.1\|1199200_1200079_-	NAD(+) kinase	NA	NA	NA	NA
AWE31845.1\|1200010_1200205_+	molecular chaperone GrpE	NA	NA	NA	NA
AWE28594.1\|1200201_1200792_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
AWE28595.1\|1200826_1201432_-	cytoplasmic protein	NA	NA	NA	NA
AWE28596.1\|1201552_1202794_-	DUF21 domain-containing protein	NA	NA	NA	NA
AWE28597.1\|1202858_1203650_-	inner membrane protein YpjD	NA	NA	NA	NA
AWE28598.1\|1203595_1203892_-	hypothetical protein	NA	NA	NA	NA
AWE28599.1\|1203815_1205177_+	signal recognition particle protein	NA	NA	NA	NA
AWE31847.1\|1205429_1205678_+	30S ribosomal protein S16	NA	NA	NA	NA
AWE31846.1\|1205696_1206245_+	ribosome maturation factor RimM	NA	NA	NA	NA
AWE28600.1\|1206289_1207057_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1468332 : 1547015

105

Salmonella_phage(62.67%)

head,protease,lysis,tRNA,tail,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE28817.1\|1468332_1469271_+\|protease	omptin family outer membrane protease PgtE	NA	NA	NA	NA
AWE28818.1\|1469634_1469955_+	helicase	NA	NA	NA	NA
AWE28819.1\|1470867_1471674_+	DUF2971 domain-containing protein	NA	NA	NA	NA
AWE28820.1\|1471684_1472701_+	DUF2971 domain-containing protein	NA	NA	NA	NA
AWE28821.1\|1474103_1474307_-	hypothetical protein	C6ZR24	Salmonella_phage	2.7e-32	97.0
AWE28822.1\|1474403_1474754_-	hypothetical protein	I6R980	Salmonella_phage	5.4e-60	99.1
AWE28823.1\|1474810_1475611_-	hypothetical protein	K7P7Q8	Enterobacteria_phage	4.1e-156	97.4
AWE28824.1\|1475653_1475938_-	ASCH domain-containing protein	A5VWB6	Enterobacteria_phage	7.0e-50	98.9
AWE28825.1\|1475930_1476851_-	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	1.9e-80	82.9
AWE28826.1\|1477142_1477811_-	hypothetical protein	Q8HAA6	Salmonella_phage	3.1e-40	73.0
AWE28827.1\|1477807_1478323_-	DUF262 domain-containing protein	Q8HAA5	Salmonella_phage	1.1e-96	98.8
AWE28828.1\|1478432_1479014_-	Eae-like protein	A0A0N6WGF1	Salmonella_phage	2.8e-69	72.0
AWE28829.1\|1479010_1479181_-	DUF2737 domain-containing protein	I6S642	Salmonella_phage	6.1e-25	100.0
AWE28830.1\|1479191_1479485_-	DUF2856 domain-containing protein	E7C9P8	Salmonella_phage	2.1e-49	97.9
AWE28831.1\|1479531_1479816_-	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
AWE28832.1\|1479815_1480523_-	recombinase	I6R0N0	Salmonella_phage	5.2e-118	87.6
AWE28833.1\|1480652_1480841_-	protein kil	I6S647	Salmonella_phage	3.7e-31	100.0
AWE31857.1\|1480821_1480995_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.6e-23	100.0
AWE28834.1\|1481064_1481379_-	superinfection exclusion protein	E7C9Q4	Salmonella_phage	1.9e-56	100.0
AWE28835.1\|1481550_1482165_-	pentapeptide repeat-containing protein	A0A220NQW1	Salmonella_phage	3.2e-47	70.6
AWE28836.1\|1482248_1482494_-	hypothetical protein	U5PUY0	Salmonella_phage	2.5e-19	62.3
AWE28837.1\|1482501_1482834_-	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	4.6e-53	96.4
AWE31858.1\|1483184_1483847_-	helix-turn-helix domain-containing protein	A0A0M4QWY1	Salmonella_phage	1.7e-126	99.5
AWE28838.1\|1483965_1484181_+	XRE family transcriptional regulator	A0A0M4RTV8	Salmonella_phage	4.1e-34	100.0
AWE28839.1\|1484291_1484573_+	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
AWE28840.1\|1484607_1484754_+	DUF2740 domain-containing protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
AWE28841.1\|1484746_1485580_+	DNA replication protein	A0A1R3Y5R9	Salmonella_virus	2.3e-149	98.2
AWE28842.1\|1485576_1486953_+	replicative DNA helicase	Q76H51	Enterobacteria_phage	4.1e-252	98.9
AWE28843.1\|1487025_1487232_+	hypothetical protein	I6RSI5	Salmonella_phage	5.3e-31	98.5
AWE28844.1\|1487410_1487677_+	hypothetical protein	Q716C8	Shigella_phage	3.1e-23	61.2
AWE28845.1\|1487679_1487868_+	hypothetical protein	A0A1R3Y6Z7	Salmonella_virus	3.7e-23	90.3
AWE28846.1\|1487824_1488271_+	recombination protein NinB	A0A1R3Y605	Salmonella_virus	2.3e-79	98.6
AWE28847.1\|1488267_1488441_+	protein ninD	C6ZR56	Salmonella_phage	5.2e-32	100.0
AWE28848.1\|1488407_1488584_+	NinE family protein	I6RSQ2	Salmonella_phage	2.3e-27	98.3
AWE28849.1\|1488586_1488988_+	hypothetical protein	G9L690	Escherichia_phage	2.7e-63	85.0
AWE28850.1\|1488980_1489157_+	protein ninF	I6S668	Salmonella_phage	3.1e-24	93.0
AWE28851.1\|1489149_1489368_+	hypothetical protein	S4TUE0	Salmonella_phage	5.6e-23	68.1
AWE28852.1\|1489368_1489659_+	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	1.7e-51	100.0
AWE28853.1\|1489655_1490051_+	RusA family crossover junction endodeoxyribonuclease	A0A220NQY4	Salmonella_phage	2.2e-70	96.9
AWE28854.1\|1490047_1490251_+	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
AWE28855.1\|1490320_1490944_+	antitermination protein	C6ZR62	Salmonella_phage	1.5e-113	99.0
AWE28856.1\|1491368_1491707_+	Fis family transcriptional regulator	A0A1W6DXT8	Salmonella_phage	1.1e-22	50.0
AWE28857.1\|1491900_1492080_-	hypothetical protein	NA	NA	NA	NA
AWE31859.1\|1492086_1492293_-	hypothetical protein	A0A088CPS7	Enterobacteria_phage	6.2e-16	76.8
AWE28858.1\|1492404_1492731_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
AWE28859.1\|1492714_1493152_+	lysozyme	Q5G8R3	Enterobacteria_phage	2.6e-72	96.6
AWE28860.1\|1493148_1493610_+\|lysis	lysis protein	K7PJW6	Enterobacteria_phage	4.5e-54	79.3
AWE28861.1\|1493828_1494350_+	DNA-binding protein	K7P7K9	Enterobacteria_phage	5.5e-93	98.8
AWE28862.1\|1494814_1495246_+\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	7.6e-72	100.0
AWE28863.1\|1495229_1496549_+\|terminase	PBSX family phage terminase large subunit	A0A1V0E5Q3	Salmonella_phage	4.6e-261	99.1
AWE28864.1\|1496610_1496877_+	hypothetical protein	Q5G8Y6	Enterobacteria_phage	8.3e-45	100.0
AWE28865.1\|1497117_1498467_+	DUF1073 domain-containing protein	A0A1V0E5Q5	Salmonella_phage	9.1e-257	98.9
AWE28866.1\|1498426_1499353_+\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	2.2e-169	97.7
AWE28867.1\|1499355_1500621_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	2.0e-229	97.1
AWE28868.1\|1500633_1501083_+	hypothetical protein	I6S1Q2	Salmonella_phage	9.6e-78	100.0
AWE28869.1\|1501100_1502177_+	hypothetical protein	I6RSK5	Salmonella_phage	9.0e-207	99.7
AWE28870.1\|1502186_1502366_+	glycoprotein	I6R9A3	Salmonella_phage	6.8e-27	100.0
AWE28871.1\|1502417_1502819_+	hypothetical protein	I6S619	Salmonella_phage	7.8e-71	97.7
AWE28872.1\|1502818_1503007_+	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-30	100.0
AWE28873.1\|1502990_1503353_+	hypothetical protein	I6S1Q5	Salmonella_phage	1.2e-67	99.2
AWE28874.1\|1503360_1503756_+	hypothetical protein	I6RSK8	Salmonella_phage	5.5e-69	99.2
AWE28875.1\|1503752_1504139_+	hypothetical protein	Q5G8X4	Enterobacteria_phage	3.8e-67	97.7
AWE28876.1\|1504154_1504892_+	hypothetical protein	Q5G8X3	Enterobacteria_phage	2.3e-129	98.0
AWE28877.1\|1504937_1505591_+	hypothetical protein	I6R0Q2	Salmonella_phage	3.3e-119	98.2
AWE28878.1\|1505812_1506541_+	DNA-binding protein	I6S1R0	Salmonella_phage	3.4e-141	98.8
AWE28879.1\|1506582_1506960_-	Arc family DNA-binding protein	I6RSL2	Salmonella_phage	1.3e-64	100.0
AWE28880.1\|1507075_1507246_+	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	5.7e-23	100.0
AWE28881.1\|1507238_1508213_+	phage antirepressor Ant	I6S627	Salmonella_phage	3.8e-188	99.7
AWE28882.1\|1508318_1508963_+	hypothetical protein	NA	NA	NA	NA
AWE28883.1\|1509031_1512226_+	hypothetical protein	Q5G8W8	Enterobacteria_phage	1.1e-255	58.1
AWE28884.1\|1512253_1512475_+	hypothetical protein	NA	NA	NA	NA
AWE28885.1\|1512531_1512879_+\|tail	phage tail protein	A0A1V0E5N3	Salmonella_phage	2.2e-61	97.4
AWE28886.1\|1512875_1513163_+	hypothetical protein	NA	NA	NA	NA
AWE28887.1\|1513205_1513910_+\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	1.6e-135	98.7
AWE28888.1\|1513909_1514629_+\|tail	phage tail protein	I6S1R8	Salmonella_phage	7.3e-136	92.1
AWE28889.1\|1514571_1515099_+\|tail	tail assembly protein	I6RSM0	Salmonella_phage	6.4e-65	93.8
AWE28890.1\|1515108_1518288_+	DUF1983 domain-containing protein	A0A1V0E5M1	Salmonella_phage	0.0e+00	96.0
AWE28891.1\|1518296_1519256_+	hypothetical protein	H6WRW5	Salmonella_phage	1.4e-182	99.4
AWE28892.1\|1519266_1520565_+\|tail	phage tail protein	I6R0Q9	Salmonella_phage	4.5e-245	99.5
AWE28893.1\|1520636_1521806_-	DUF4102 domain-containing protein	I6R0M2	Salmonella_phage	2.7e-228	99.2
AWE28894.1\|1522119_1523061_-	hypothetical protein	E7DYY8	Enterobacteria_phage	1.1e-147	88.2
AWE28895.1\|1523349_1524105_+	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AWE28896.1\|1524165_1525473_-	long-chain fatty acid transporter	NA	NA	NA	NA
AWE28897.1\|1525843_1526128_+	DUF406 family protein	NA	NA	NA	NA
AWE28898.1\|1526305_1527616_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AWE28899.1\|1527615_1529763_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AWE28900.1\|1529971_1530457_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AWE28901.1\|1530556_1531108_-	endonuclease SmrB	NA	NA	NA	NA
AWE28902.1\|1531273_1532206_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AWE28903.1\|1532241_1533327_+	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-90	47.8
AWE28904.1\|1533330_1534155_+	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AWE28905.1\|1534154_1534964_+	hypothetical protein	NA	NA	NA	NA
AWE28906.1\|1534963_1535512_+	elongation factor P hydroxylase	NA	NA	NA	NA
AWE28907.1\|1535544_1535820_+	YfcL family protein	NA	NA	NA	NA
AWE28908.1\|1535871_1537932_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AWE28909.1\|1538031_1539246_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
AWE28910.1\|1539343_1540000_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AWE28911.1\|1540066_1540585_-	DUF3828 domain-containing protein	NA	NA	NA	NA
AWE28912.1\|1540796_1540979_-	DNA-binding protein	NA	NA	NA	NA
AWE28913.1\|1541151_1541526_+	hypothetical protein	NA	NA	NA	NA
AWE28914.1\|1541705_1542884_+	MFS transporter	NA	NA	NA	NA
AWE28915.1\|1542880_1543882_-	flagella biosynthesis regulator	NA	NA	NA	NA
AWE28916.1\|1543985_1545122_+	erythronate-4-phosphate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	3.8e-22	29.1
AWE28917.1\|1545189_1546203_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AWE28918.1\|1546202_1547015_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA

DBSCAN-SWA_3

1746594 : 1755768

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE29111.1\|1746594_1747542_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
AWE29112.1\|1747525_1748257_+	ABC transporter permease	NA	NA	NA	NA
AWE29113.1\|1748237_1748345_-	hypothetical protein	NA	NA	NA	NA
AWE29114.1\|1748404_1749136_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AWE31865.1\|1749361_1751047_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	3.4e-277	90.9
AWE29115.1\|1751043_1751763_+	DNA-binding response regulator	NA	NA	NA	NA
AWE29116.1\|1751809_1752277_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AWE29117.1\|1752333_1752864_-	DUF1307 domain-containing protein	NA	NA	NA	NA
AWE29118.1\|1753035_1753494_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
AWE29119.1\|1753734_1755768_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_4

1912941 : 1920208

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE29264.1\|1912941_1913361_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AWE29265.1\|1913363_1914632_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.9e-227	92.2
AWE29266.1\|1915086_1915299_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AWE31872.1\|1915309_1915498_+	cold-shock protein	NA	NA	NA	NA
AWE29267.1\|1915756_1916968_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	2.6e-109	56.2
AWE29268.1\|1917617_1917917_+	hypothetical protein	NA	NA	NA	NA
AWE29269.1\|1918008_1918704_+	phosphohydrolase	S4W232	Pandoravirus	1.6e-07	28.0
AWE29270.1\|1918777_1920208_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.8e-105	57.4

DBSCAN-SWA_5

2718402 : 2722822

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE30048.1\|2718402_2718642_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	2.5e-32	87.3
AWE31907.1\|2719521_2720331_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	2.1e-62	50.0
AWE30049.1\|2720403_2720781_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
AWE30050.1\|2720928_2721471_-	hypothetical protein	A0A0U2S643	Escherichia_phage	8.1e-71	66.5
AWE30051.1\|2721663_2722392_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	1.2e-61	52.5
AWE30052.1\|2722408_2722822_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	5.5e-19	37.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029039

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection