CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029079	Staphylococcus aureus strain AR466 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	0	0
CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	6 crisprs	DinG,WYL,cas3,DEDDh,csa3	2	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029080_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029080_1

129508-129601

Orphan

Consensus_repeat	Method
TTCTTCAAATTTATTTGTTAGAAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029080_1

>merge|CP029080|1|129508-129601|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGGCTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTCTTCTTCAAATTTATTTGTTAGAAAGG

>CP029080|1|1|129508-129601|CRISPRCasFinder
TTCTTCAAATTTATTTGTTAGAAAGG	CTTATGCAGTTGACGTTTTACGTCCAACTGCGTTCCTCCGTC
TTCTTCAAATTTATTTGTTAGAAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029080.1\|AWE55448.1\|119371_120415_-\|periplasmic-solute-binding-family-protein	unknown	unknown	gnl\|CDD\|238499
CP029080.1\|AWE56960.1\|121324_121687_-\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|291399
CP029080.1\|AWE57453.1\|124016_124736_-\|L-cystine-transport-system-permease-protein-TcyB	unknown	unknown	gnl\|CDD\|223836
CP029080.1\|AWE56930.1\|121941_123192_+\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|367067
CP029080.1\|AWE55467.1\|134289_135267_+\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|273388
CP029080.1\|AWE57199.1\|135325_135793_-\|queT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
CP029080.1\|AWE56814.1\|129994_131308_+\|immunoglobulin-binding-protein-sbi	unknown	unknown	gnl\|CDD\|288473
CP029080.1\|AWE56529.1\|125616_127056_-\|H+-antiporter-2-family-protein	unknown	unknown	gnl\|CDD\|129794
CP029080.1\|AWE57166.1\|124716_125496_-\|bacterial-extracellular-solute-binding,-3-family-protein	unknown	unknown	gnl\|CDD\|270429
CP029080.1\|AWE55428.1\|120706_121306_-\|thioredoxin-like-domain-protein	unknown	unknown	gnl\|CDD\|224565
CP029080.1\|AWE57398.1\|138608_139967_-\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
CP029080.1\|AWE55182.1\|139944_140631_-\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
CP029080.1\|AWE55619.1\|128500_129367_-\|cation-diffusion-facilitator-transporter-family-protein	unknown	unknown	gnl\|CDD\|223131
CP029080.1\|AWE55139.1\|136506_137619_-\|beta-eliminating-lyase-family-protein	unknown	unknown	gnl\|CDD\|223234
CP029080.1\|AWE55319.1\|131843_132773_+\|gamma-hemolysin-component-A	unknown	unknown	gnl\|CDD\|369625
CP029080.1\|AWE55391.1\|133340_134288_+\|gamma-hemolysin-component-C	unknown	unknown	gnl\|CDD\|369625
CP029080.1\|AWE57044.1\|135803_136496_-\|6-carboxyhexanoate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|224342
CP029080.1\|AWE55145.1\|127487_128174_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184518
CP029080.1\|AWE55982.1\|123288_124020_-\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224051
CP029080.1\|AWE55854.1\|137599_138607_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755

Protein	Function_ID	Function_description	E-value
CP029080.1\|AWE55448.1\|119371_120415_-\|periplasmic-solute-binding-family-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	2.00753e-91
CP029080.1\|AWE56960.1\|121324_121687_-\|putative-lipoprotein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	1.83927e-31
CP029080.1\|AWE57453.1\|124016_124736_-\|L-cystine-transport-system-permease-protein-TcyB	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	8.38308e-78
CP029080.1\|AWE56930.1\|121941_123192_+\|acetyltransferase-domain-protein	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
CP029080.1\|AWE55467.1\|134289_135267_+\|gamma-hemolysin-component-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	4.68948e-128
CP029080.1\|AWE57199.1\|135325_135793_-\|queT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00103624
CP029080.1\|AWE56814.1\|129994_131308_+\|immunoglobulin-binding-protein-sbi	gnl\|CDD\|288473	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI. This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold.	7.22146e-28
CP029080.1\|AWE56529.1\|125616_127056_-\|H+-antiporter-2-family-protein	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.17835e-92
CP029080.1\|AWE57166.1\|124716_125496_-\|bacterial-extracellular-solute-binding,-3-family-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.4238e-99
CP029080.1\|AWE55428.1\|120706_121306_-\|thioredoxin-like-domain-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	7.90499e-30
CP029080.1\|AWE57398.1\|138608_139967_-\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
CP029080.1\|AWE55182.1\|139944_140631_-\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	1.45777e-70
CP029080.1\|AWE55619.1\|128500_129367_-\|cation-diffusion-facilitator-transporter-family-protein	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.98386e-90
CP029080.1\|AWE55139.1\|136506_137619_-\|beta-eliminating-lyase-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	1.80433e-137
CP029080.1\|AWE55319.1\|131843_132773_+\|gamma-hemolysin-component-A	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	2.15607e-97
CP029080.1\|AWE55391.1\|133340_134288_+\|gamma-hemolysin-component-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.96123e-92
CP029080.1\|AWE57044.1\|135803_136496_-\|6-carboxyhexanoate--CoA-ligase-family-protein	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	4.99039e-130
CP029080.1\|AWE55145.1\|127487_128174_-\|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184518	PRK14119, gpmA, phosphoglyceromutase; Provisional.	3.52864e-167
CP029080.1\|AWE55982.1\|123288_124020_-\|ABC-transporter-family-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.59267e-145
CP029080.1\|AWE55854.1\|137599_138607_-\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0

>CP029080.1|AWE55619.1|128500_129367_-|cation-diffusion-facilitator-transporter-family-protein
MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADALNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQNAPRLFKEDDVVPNEITIIVSLISGLVMLIVFAVNQRLAKRTKSSSLNSAAKDNLSDSLVSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAYRNDILEVDEVQEVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGISSVYVHPEPDHL
>CP029080.1|AWE55145.1|127487_128174_-|2,3-bisphosphoglycerate-dependent-phosphoglycerate-mutase
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
>CP029080.1|AWE56529.1|125616_127056_-|H+-antiporter-2-family-protein
MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGISIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGIVLVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIEMMNQIKIDTMLHGYHAGFLFALLITVISFFCSFMLQGKKKEVDSHQ
>CP029080.1|AWE57166.1|124716_125496_-|bacterial-extracellular-solute-binding,-3-family-protein
MKRLLFVVIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKAEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSKSAFAFSKKVDDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK
>CP029080.1|AWE57453.1|124016_124736_-|L-cystine-transport-system-permease-protein-TcyB
MFLNLNSEQLHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKVLRSIARVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYRQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS
>CP029080.1|AWE55982.1|123288_124020_-|ABC-transporter-family-protein
MIQLNNIHKSFNDVEVIKGIDLSVGKGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEIFNNPKTEELKRFLNVINEE
>CP029080.1|AWE56930.1|121941_123192_+|acetyltransferase-domain-protein
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHRVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLIDPYLIENLRNAEGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESAEDCGVQQFKKGFNAHVEEYIGDFIKPIKPMLYKLQTYLKHKRR
>CP029080.1|AWE56960.1|121324_121687_-|putative-lipoprotein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYDFSDERVSYKQDFDSRRYYQQHDADYHEENMTN
>CP029080.1|AWE55428.1|120706_121306_-|thioredoxin-like-domain-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAEDHHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
>CP029080.1|AWE55448.1|119371_120415_-|periplasmic-solute-binding-family-protein
MKKKLGMLLLVPAVTLSLAACGNDDGKDKDGKVTIKTTVYPLQSFAEQIGGKHVKVSSIYPAGTDLHSYEPTQKDILSASKSDLFMYTGDNLDPVAKKVASTIKDKDKKLSLEDKLDKAKLLTDQHEHGEEHEHEGHDHEKEEHHHHGGYDPHVWLDPKINQTFAKEIKDELVKKDPKHKDDYEKNYKKLNDDLKKIDNDMKQVTKDKQGNAVFISHESIGYLADRYGFVQKGIQNMNAEDPSQKELTKIVKEIRDSNAKYILYEDNVANKVTETIRKETDAKPLKFYNMESLNKEQQKKDNITYQSLMKSNIENIGKALDSGVKVKDDKAESKHDKAISDGYFKDE
>CP029080.1|AWE56814.1|129994_131308_+|immunoglobulin-binding-protein-sbi
MKNKYISKLLVGAATITLATMISNGEAKASENTQQSSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYYNKYYQYKGLIDKTVLTTIGSGYGSYIKPLEVSKESGNLAKSYAQVRNYVTESINTGKVLYAFYQKPELVKTAIKAQETATTFKNALTGIFKSFWK
>CP029080.1|AWE55319.1|131843_132773_+|gamma-hemolysin-component-A
MIKNKILTATLAVGLIAPLANPFIEISKAENKIEDIGQGAEIIKRTQDITSKRLAITQNIQFDFVKDKKYNKDALVVKMQGFISSRTTYSDLKKYPYIKRMIWPFQYNISLKTKDSNVDLINYLPKNKIDSADVSQKLGYNIGGNFQSAPSIGGSGSFNYSKTISYNQKNYVTEVESQNSKGVKWGVKANSFVTPNGQVSAYDQYLFAQDPTGPAARDYFVPDNQLPPLIQSGFNPSFITTLSHEKGKGDKSEFEITYGRNMDATYAYVTRHRLAVDRKHDAFKNRNVTVKYEVNWKTHEVKIKSITPK
>CP029080.1|AWE55391.1|133340_134288_+|gamma-hemolysin-component-C
MLKNKILATTLSVSLLAPLANPLLEKAKAANDTEDIGKGNDVEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKNTNHIKSMRWPFQYNIGLKTNDPNVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFVTASGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRIHNAFKNRNYTVKYEVNWKTHEIKVKGQN
>CP029080.1|AWE55467.1|134289_135267_+|gamma-hemolysin-component-B
MNMNKLVKSSVATSMALLLLSNTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKAAGNINSGYERPNPKDYDFSKIYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNYKTRTFKSTYEIDWENHKVKLLDTKETEINK
>CP029080.1|AWE57199.1|135325_135793_-|queT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLILSVILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>CP029080.1|AWE57044.1|135803_136496_-|6-carboxyhexanoate--CoA-ligase-family-protein
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQNLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDDRIDLNHYISFLESTPKQVVYETV
>CP029080.1|AWE55139.1|136506_137619_-|beta-eliminating-lyase-family-protein
MFQEQIDLLQQKGLYRSLKTVGYIDRQYIEVENQRCTNYTSNDYLGLGQIAFDKNDFEKFMRKYSYHLSSSRLISGSSAAYEEIETMLAGWLGYSACTILNSGYDANLTLFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAECPNQNIQKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKSLNVNYNSSNSPIKFIEFDDIEAAENIHQILLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>CP029080.1|AWE55854.1|137599_138607_-|biotin-synthase
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYGTCENKENKNDVSRAN
>CP029080.1|AWE57398.1|138608_139967_-|adenosylmethionine-8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKCKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRNCKENGLMIRNLENVITFVPLLSMSNKEVKTMVRIFKKAVHNILDRKC
>CP029080.1|AWE55182.1|139944_140631_-|dethiobiotin-synthase
MRIFITSTNTDVGKTYVTKHLYHALKRRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMADQIFLNKQRVLDKVKVLDKEFDFILVEGAGGIGVPIYEDTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSVNNFLIMNRYTDSYIEKDNQMTIEKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT

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Crispr_ID: CP029080_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029080_2

1177501-1177602

Orphan

Consensus_repeat	Method
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029080_2

>merge|CP029080|2|1177501-1177602|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGGACAAAGGAATACAGTTGGATGCTAACGCACCAACTGCATAAGAACCCCTAATTAATAAATTAAAAGGGG

>CP029080|2|2|1177501-1177602|CRISPRCasFinder
CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	ACAAAGGAATACAGTTGGATGCTAACGCACCAACTG
CATAAGAACCCCTAATTAATAAATTAAAAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029080.1\|AWE55356.1\|1174874_1175348_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226072
CP029080.1\|AWE55463.1\|1183322_1184006_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
CP029080.1\|AWE56782.1\|1167221_1168229_+\|phosphate-transporter-family-protein	unknown	unknown	gnl\|CDD\|376541
CP029080.1\|AWE56374.1\|1181656_1182199_+\|acetyltransferase-family-protein	unknown	unknown	gnl\|CDD\|379112
CP029080.1\|AWE55251.1\|1179423_1180113_-\|hypothetical-protein	unknown	unknown	unknown
CP029080.1\|AWE55758.1\|1182861_1183320_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|178882
CP029080.1\|AWE55222.1\|1173609_1173969_+\|putative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
CP029080.1\|AWE56594.1\|1166588_1167206_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224310
CP029080.1\|AWE55447.1\|1180750_1181140_+\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|234750
CP029080.1\|AWE56461.1\|1176460_1177327_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|223656
CP029080.1\|AWE55728.1\|1181277_1181577_+\|hypothetical-protein	unknown	unknown	unknown
CP029080.1\|AWE55910.1\|1175700_1176345_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225188
CP029080.1\|AWE55204.1\|1168814_1169612_-\|N-acetylmuramoyl-L-alanine-amidase-sle1	unknown	unknown	gnl\|CDD\|226451
CP029080.1\|AWE56538.1\|1182293_1182860_-\|putative-lysine-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|224527
CP029080.1\|AWE56657.1\|1180366_1180684_+\|acetyltransferase-family-protein	unknown	unknown	gnl\|CDD\|366181
CP029080.1\|AWE56523.1\|1178836_1179325_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225395
CP029080.1\|AWE55801.1\|1169972_1170617_+\|inhibitor-of-apoptosis-promoting-Bax1-family-protein	unknown	unknown	gnl\|CDD\|223742
CP029080.1\|AWE56886.1\|1174158_1174875_+\|DNA-binding-regulatory,-YebC/PmpR-family-protein	unknown	unknown	gnl\|CDD\|237084
CP029080.1\|AWE55329.1\|1177625_1178840_+\|major-Facilitator-Superfamily-protein	unknown	unknown	gnl\|CDD\|341024
CP029080.1\|AWE55694.1\|1171313_1173464_+\|helix-turn-helix-domain-protein	unknown	unknown	gnl\|CDD\|197666

Protein	Function_ID	Function_description	E-value
CP029080.1\|AWE55356.1\|1174874_1175348_+\|hypothetical-protein	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	1.20272e-69
CP029080.1\|AWE55463.1\|1183322_1184006_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000244831
CP029080.1\|AWE56782.1\|1167221_1168229_+\|phosphate-transporter-family-protein	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.23541e-104
CP029080.1\|AWE56538.1\|1182293_1182860_-\|putative-lysine-decarboxylase-family-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.34406e-61
CP029080.1\|AWE55222.1\|1173609_1173969_+\|putative-transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.80838e-22
CP029080.1\|AWE56594.1\|1166588_1167206_+\|hypothetical-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.27806e-54
CP029080.1\|AWE55447.1\|1180750_1181140_+\|putative-lipoprotein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000121797
CP029080.1\|AWE56461.1\|1176460_1177327_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	7.62776e-39
CP029080.1\|AWE56374.1\|1181656_1182199_+\|acetyltransferase-family-protein	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.74611e-27
CP029080.1\|AWE55910.1\|1175700_1176345_+\|hypothetical-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	1.86772e-90
CP029080.1\|AWE55204.1\|1168814_1169612_-\|N-acetylmuramoyl-L-alanine-amidase-sle1	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.27934e-40
CP029080.1\|AWE55758.1\|1182861_1183320_-\|hypothetical-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.78289e-77
CP029080.1\|AWE56657.1\|1180366_1180684_+\|acetyltransferase-family-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.43617e-12
CP029080.1\|AWE56523.1\|1178836_1179325_+\|hypothetical-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	4.76789e-44
CP029080.1\|AWE55801.1\|1169972_1170617_+\|inhibitor-of-apoptosis-promoting-Bax1-family-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	6.05655e-32
CP029080.1\|AWE56886.1\|1174158_1174875_+\|DNA-binding-regulatory,-YebC/PmpR-family-protein	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	1.24759e-136
CP029080.1\|AWE55329.1\|1177625_1178840_+\|major-Facilitator-Superfamily-protein	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.11563e-101
CP029080.1\|AWE55694.1\|1171313_1173464_+\|helix-turn-helix-domain-protein	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.6271e-20

>CP029080.1|AWE56461.1|1176460_1177327_+|lysR-substrate-binding-domain-protein
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISREQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVERPKA
>CP029080.1|AWE55910.1|1175700_1176345_+|hypothetical-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNRQKPQNKTNFEKSKQIKPKQYNQTKNHQQQKKN
>CP029080.1|AWE55356.1|1174874_1175348_+|hypothetical-protein
MKTAKQWINELQLESHPEGGFYRETIREVLKDGHRAPFSSIYFLPTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGAYTTATLGTDIQNGDVLQYVVPKGTIFASSIENLNSYSLVGCMCQPAFEFKQFELFKQSELFVQYPHLKSVIEKYALK
>CP029080.1|AWE56886.1|1174158_1174875_+|DNA-binding-regulatory,-YebC/PmpR-family-protein
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKTVDDILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEEDQVTFEKLIDALEDLEDVQNVFHNVDLK
>CP029080.1|AWE55222.1|1173609_1173969_+|putative-transcriptional-regulator
MNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKYCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNDDDISKFNALFEDVEQFLNI
>CP029080.1|AWE55694.1|1171313_1173464_+|helix-turn-helix-domain-protein
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPINDADIRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKFNKCIMLNPEPLVGGMAQEVKEVILNYIDHYKNHLTDVIHIDEDKFEIPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESDLKIAFNINDIETTYYVEEAFMNVIRQLSPNEINHHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFDKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQTFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSNNSLNINVTFNALYIIKIGKK
>CP029080.1|AWE55801.1|1169972_1170617_+|inhibitor-of-apoptosis-promoting-Bax1-family-protein
MSQNTNHSYFQQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>CP029080.1|AWE55204.1|1168814_1169612_-|N-acetylmuramoyl-L-alanine-amidase-sle1
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>CP029080.1|AWE56782.1|1167221_1168229_+|phosphate-transporter-family-protein
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLAGLLFYILNLFF
>CP029080.1|AWE56594.1|1166588_1167206_+|hypothetical-protein
MFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYESHGDELVHQVITDLNQTFITPIEREDILSLCDAIDDVLDAIEETAAMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESMEEIADKCQIVANNFETIIMKNS
>CP029080.1|AWE55329.1|1177625_1178840_+|major-Facilitator-Superfamily-protein
MFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLQTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>CP029080.1|AWE56523.1|1178836_1179325_+|hypothetical-protein
MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>CP029080.1|AWE55251.1|1179423_1180113_-|hypothetical-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKSGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>CP029080.1|AWE56657.1|1180366_1180684_+|acetyltransferase-family-protein
MICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKQISSTIHKSNLPMISLNKDLGYQVSHVKMYKDID
>CP029080.1|AWE55447.1|1180750_1181140_+|putative-lipoprotein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDNKKDEDKDKEASQDKQPKDQTKSSNKDNHKKPTSTDKDQKANDKHQP
>CP029080.1|AWE55728.1|1181277_1181577_+|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>CP029080.1|AWE56374.1|1181656_1182199_+|acetyltransferase-family-protein
MIYCETERLILRDWHEDDLLPFQKMNATYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSEYPFKELPLYEIGWRLLPEFWGKGLATEGANATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>CP029080.1|AWE56538.1|1182293_1182860_-|putative-lysine-decarboxylase-family-protein
MKRIAVYCGASKGHDPSYVQKAYNLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>CP029080.1|AWE55758.1|1182861_1183320_-|hypothetical-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVITQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYINAQIRKQGGRHKGPPPFTKQDQKVFEQSLLRVIHRIKELD
>CP029080.1|AWE55463.1|1183322_1184006_-|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKTQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029080_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029080_3

1276299-1276382

Unclear

Consensus_repeat	Method
GTAAGCTGACTTTACGTTAGCTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029080_3

>merge|CP029080|3|1276299-1276382|CRISPRCasFinder
GTAAGCTGACTTTACGTTAGCTTCTTTGTTGGGGCCCACACCCCAACTTGCACATTATCGTAAGCTGACTTTACGTCAGCTTCT

>CP029080|3|3|1276299-1276382|CRISPRCasFinder
GTAAGCTGACTTTACGTTAGCTTCT	TTGTTGGGGCCCACACCCCAACTTGCACATTATC
GTAAGCTGACTTTACGTCAGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029080.1\|AWE56146.1\|1265885_1267871_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029080.1\|AWE56078.1\|1280152_1280740_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029080.1\|AWE57178.1\|1273361_1274801_+\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276809
CP029080.1\|AWE56185.1\|1278645_1279590_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029080.1\|AWE56319.1\|1263720_1264560_+\|CHAP-domain-protein	unknown	unknown	gnl\|CDD\|226451
CP029080.1\|AWE56275.1\|1277538_1278534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029080.1\|AWE57205.1\|1273072_1273354_+\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100047
CP029080.1\|AWE56085.1\|1264733_1265384_+\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029080.1\|AWE55828.1\|1283001_1283904_-\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029080.1\|AWE57231.1\|1285844_1286858_+\|glycolytic-operon-regulator	unknown	unknown	gnl\|CDD\|225263
CP029080.1\|AWE57525.1\|1274867_1275803_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029080.1\|AWE56808.1\|1276630_1277542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029080.1\|AWE55224.1\|1284606_1285236_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
CP029080.1\|AWE55584.1\|1267878_1270707_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029080.1\|AWE56534.1\|1272021_1272861_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029080.1\|AWE56222.1\|1288059_1289250_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP029080.1\|AWE55823.1\|1271083_1272016_+\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029080.1\|AWE55223.1\|1280921_1282556_+\|malic-enzyme,-NAD-binding-domain-protein	unknown	unknown	gnl\|CDD\|237414
CP029080.1\|AWE56639.1\|1265380_1265617_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP029080.1\|AWE57036.1\|1286910_1287921_+\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	unknown	unknown	gnl\|CDD\|273675

Protein	Function_ID	Function_description	E-value
CP029080.1\|AWE56146.1\|1265885_1267871_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029080.1\|AWE56078.1\|1280152_1280740_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029080.1\|AWE57178.1\|1273361_1274801_+\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.78879e-06
CP029080.1\|AWE56185.1\|1278645_1279590_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029080.1\|AWE56319.1\|1263720_1264560_+\|CHAP-domain-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.74116e-42
CP029080.1\|AWE56275.1\|1277538_1278534_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029080.1\|AWE57205.1\|1273072_1273354_+\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.13458e-26
CP029080.1\|AWE56085.1\|1264733_1265384_+\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	2.8293e-58
CP029080.1\|AWE55828.1\|1283001_1283904_-\|NADH(P)-binding-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	3.55253e-152
CP029080.1\|AWE57231.1\|1285844_1286858_+\|glycolytic-operon-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP029080.1\|AWE57525.1\|1274867_1275803_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029080.1\|AWE56808.1\|1276630_1277542_+\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029080.1\|AWE55224.1\|1284606_1285236_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000190559
CP029080.1\|AWE55584.1\|1267878_1270707_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029080.1\|AWE56534.1\|1272021_1272861_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.44091e-119
CP029080.1\|AWE56222.1\|1288059_1289250_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP029080.1\|AWE55823.1\|1271083_1272016_+\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029080.1\|AWE55223.1\|1280921_1282556_+\|malic-enzyme,-NAD-binding-domain-protein	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
CP029080.1\|AWE56639.1\|1265380_1265617_+\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP029080.1\|AWE57036.1\|1286910_1287921_+\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0

>CP029080.1|AWE57525.1|1274867_1275803_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029080.1|AWE57178.1|1273361_1274801_+|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029080.1|AWE57205.1|1273072_1273354_+|bacterial-transferase-hexapeptide-family-protein
MLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029080.1|AWE56534.1|1272021_1272861_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSFGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIIYRRIKYNPPLYSKVGALPWPTKKVK
>CP029080.1|AWE55823.1|1271083_1272016_+|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029080.1|AWE55584.1|1267878_1270707_+|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKNIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHHIEIESQTVQQMVDRIMELETRTKIQLLAPVISHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNEVPELDKNKNHTIEVVVDRLVVKEGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGQRLSREALSVYVGGLNIGEVVEYSISQALNYYKNINLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDK
>CP029080.1|AWE56146.1|1265885_1267871_+|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKMKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDRGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029080.1|AWE56639.1|1265380_1265617_+|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029080.1|AWE56085.1|1264733_1265384_+|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENG
>CP029080.1|AWE56319.1|1263720_1264560_+|CHAP-domain-protein
MKKSLTVTVSSVLAFLALNNAAHAQQQGTQVKTPVQHNYVSNVQAQKQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKTVKSPVRKASQAKRVVQQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP029080.1|AWE56808.1|1276630_1277542_+|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029080.1|AWE56275.1|1277538_1278534_+|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029080.1|AWE56185.1|1278645_1279590_+|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029080.1|AWE56078.1|1280152_1280740_+|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029080.1|AWE55223.1|1280921_1282556_+|malic-enzyme,-NAD-binding-domain-protein
MKGIELLNNPFLNKGTAFTNEERKQLGLEGLLPANVRTLEQQAEQCYEQFKAKQTDFEKRLFLMAIFNRNRTLFYKLTSEHLVEFMPIIYDPVIAQSIEQYNENFSRPQDAVFLSVDRQDQIEQELRNVANDRDIRLIVVTDAEGILGIGDWGVDGVDIAIGKLIVYTGAAGINPSQVLPVSLDVGTNNEQLLNDDLYLGNRHKRVDDETYYAFVDKFVSAVRKEYPNALLHWEDFGRGHAKNILDKYEDTLPTFNDDIQGTGIVTLAGVLGALNISKVDYTNQTFLVYGGGTAGMGITNILKDELIKQGVSEEKANQHFYIMDKQGLLFDDMDDLTEAQQVFAKNRNEFSNTVNWKNLNEVIENIKPTVLIGTSTQTGAFTEDAVKEMFKHTERPVIFPLSNPTKLSEATAQDLLKWTNGKALIGTGIPYNDIEYNGVNYSIGQANNALMYPGLGLGLIASNAKKVNQQILSAASHALGGMVNPDEPGAAVLPPVEKIHQCSRAIAKAVAQSVIDQGLNAETIDDIDKAIEAEIWYPKYKSYI
>CP029080.1|AWE55828.1|1283001_1283904_-|NADH(P)-binding-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINKESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLISK
>CP029080.1|AWE55224.1|1284606_1285236_+|hypothetical-protein
MSNQNYDYKTNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQTNQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQASQQNSQSTTNKQNNANDK
>CP029080.1|AWE57231.1|1285844_1286858_+|glycolytic-operon-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP029080.1|AWE57036.1|1286910_1287921_+|glyceraldehyde-3-phosphate-dehydrogenase,-type-I
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP029080.1|AWE56222.1|1288059_1289250_+|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK

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Crispr_ID: CP029080_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029080_4

1282772-1282851

Orphan

Consensus_repeat	Method
CAGCTTCTATGTTGGGGCCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029080_4

>merge|CP029080|4|1282772-1282851|CRISPRCasFinder
CAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCC

>CP029080|4|4|1282772-1282851|CRISPRCasFinder
CAGCTTCTATGTTGGGGCCCCGCC	AACTTGCACATTATTGTAAGCTGACTTTCCGC
CAGCTTCTATGTTGGGGCCCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029080.1\|AWE55223.1\|1280921_1282556_+\|malic-enzyme,-NAD-binding-domain-protein	unknown	unknown	gnl\|CDD\|237414
CP029080.1\|AWE56424.1\|1289371_1290133_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP029080.1\|AWE56078.1\|1280152_1280740_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029080.1\|AWE57178.1\|1273361_1274801_+\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276809
CP029080.1\|AWE56185.1\|1278645_1279590_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029080.1\|AWE56514.1\|1290135_1291653_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP029080.1\|AWE56275.1\|1277538_1278534_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029080.1\|AWE57205.1\|1273072_1273354_+\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100047
CP029080.1\|AWE55228.1\|1293950_1294184_+\|preprotein-translocase,-SecG-subunit	unknown	unknown	gnl\|CDD\|224233
CP029080.1\|AWE56378.1\|1293425_1293884_+\|putative-membrane-protein	unknown	unknown	unknown
CP029080.1\|AWE55828.1\|1283001_1283904_-\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029080.1\|AWE57525.1\|1274867_1275803_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029080.1\|AWE56808.1\|1276630_1277542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029080.1\|AWE55224.1\|1284606_1285236_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
CP029080.1\|AWE56534.1\|1272021_1272861_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029080.1\|AWE56222.1\|1288059_1289250_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP029080.1\|AWE55823.1\|1271083_1272016_+\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029080.1\|AWE57231.1\|1285844_1286858_+\|glycolytic-operon-regulator	unknown	unknown	gnl\|CDD\|225263
CP029080.1\|AWE57036.1\|1286910_1287921_+\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	unknown	unknown	gnl\|CDD\|273675
CP029080.1\|AWE56317.1\|1291782_1293087_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
CP029080.1\|AWE55223.1\|1280921_1282556_+\|malic-enzyme,-NAD-binding-domain-protein	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
CP029080.1\|AWE56424.1\|1289371_1290133_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84083e-146
CP029080.1\|AWE56078.1\|1280152_1280740_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029080.1\|AWE57178.1\|1273361_1274801_+\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.78879e-06
CP029080.1\|AWE56185.1\|1278645_1279590_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029080.1\|AWE56514.1\|1290135_1291653_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP029080.1\|AWE56275.1\|1277538_1278534_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029080.1\|AWE57205.1\|1273072_1273354_+\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.13458e-26
CP029080.1\|AWE55228.1\|1293950_1294184_+\|preprotein-translocase,-SecG-subunit	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.41939e-15
CP029080.1\|AWE55828.1\|1283001_1283904_-\|NADH(P)-binding-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	3.55253e-152
CP029080.1\|AWE57525.1\|1274867_1275803_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029080.1\|AWE56808.1\|1276630_1277542_+\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029080.1\|AWE55224.1\|1284606_1285236_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000190559
CP029080.1\|AWE56534.1\|1272021_1272861_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.44091e-119
CP029080.1\|AWE56222.1\|1288059_1289250_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP029080.1\|AWE55823.1\|1271083_1272016_+\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029080.1\|AWE57231.1\|1285844_1286858_+\|glycolytic-operon-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP029080.1\|AWE57036.1\|1286910_1287921_+\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP029080.1\|AWE56317.1\|1291782_1293087_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>CP029080.1|AWE55223.1|1280921_1282556_+|malic-enzyme,-NAD-binding-domain-protein
MKGIELLNNPFLNKGTAFTNEERKQLGLEGLLPANVRTLEQQAEQCYEQFKAKQTDFEKRLFLMAIFNRNRTLFYKLTSEHLVEFMPIIYDPVIAQSIEQYNENFSRPQDAVFLSVDRQDQIEQELRNVANDRDIRLIVVTDAEGILGIGDWGVDGVDIAIGKLIVYTGAAGINPSQVLPVSLDVGTNNEQLLNDDLYLGNRHKRVDDETYYAFVDKFVSAVRKEYPNALLHWEDFGRGHAKNILDKYEDTLPTFNDDIQGTGIVTLAGVLGALNISKVDYTNQTFLVYGGGTAGMGITNILKDELIKQGVSEEKANQHFYIMDKQGLLFDDMDDLTEAQQVFAKNRNEFSNTVNWKNLNEVIENIKPTVLIGTSTQTGAFTEDAVKEMFKHTERPVIFPLSNPTKLSEATAQDLLKWTNGKALIGTGIPYNDIEYNGVNYSIGQANNALMYPGLGLGLIASNAKKVNQQILSAASHALGGMVNPDEPGAAVLPPVEKIHQCSRAIAKAVAQSVIDQGLNAETIDDIDKAIEAEIWYPKYKSYI
>CP029080.1|AWE56078.1|1280152_1280740_+|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029080.1|AWE56185.1|1278645_1279590_+|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029080.1|AWE56275.1|1277538_1278534_+|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029080.1|AWE56808.1|1276630_1277542_+|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029080.1|AWE57525.1|1274867_1275803_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029080.1|AWE57178.1|1273361_1274801_+|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029080.1|AWE57205.1|1273072_1273354_+|bacterial-transferase-hexapeptide-family-protein
MLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029080.1|AWE56534.1|1272021_1272861_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPGEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSFGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIIYRRIKYNPPLYSKVGALPWPTKKVK
>CP029080.1|AWE55823.1|1271083_1272016_+|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029080.1|AWE55828.1|1283001_1283904_-|NADH(P)-binding-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINKESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLISK
>CP029080.1|AWE55224.1|1284606_1285236_+|hypothetical-protein
MSNQNYDYKTNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQTNQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQASQQNSQSTTNKQNNANDK
>CP029080.1|AWE57231.1|1285844_1286858_+|glycolytic-operon-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP029080.1|AWE57036.1|1286910_1287921_+|glyceraldehyde-3-phosphate-dehydrogenase,-type-I
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP029080.1|AWE56222.1|1288059_1289250_+|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>CP029080.1|AWE56424.1|1289371_1290133_+|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>CP029080.1|AWE56514.1|1290135_1291653_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVEDQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
>CP029080.1|AWE56317.1|1291782_1293087_+|phosphopyruvate-hydratase
MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIALDGTPNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSKRGLETAVGDEGGFAPKFEGTEDAVETIIQAIEAAGYKPGEEVFLGFDCASSEFYENGVYDYSKFEGEHGAKRTAAEQVDYLEQLVDKYPIITIEDGMDENDWDGWKQLTERIGDRVQLVGDDLFVTNTEILAKGIENGIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELFETAKYDGIKSFYNLDK
>CP029080.1|AWE56378.1|1293425_1293884_+|putative-membrane-protein
MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
>CP029080.1|AWE55228.1|1293950_1294184_+|preprotein-translocase,-SecG-subunit
MHTFLIVLLIIDCIALITVVLLQEGKSSGLSGAISGGAEQLFGKQKQRGVDLFLNRLTIILSILFFVLMICISYLGM

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Crispr_ID: CP029080_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029080_5

2724731-2724866

Orphan

Consensus_repeat	Method
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029080_5

>merge|CP029080|5|2724731-2724866|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCAAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGATTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTC

>CP029080|5|5|2724731-2724866|CRISPRCasFinder
TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTC	AAAAGCTCACAAAACCCTTGATATCATTGGTTTCCCATGA
TTTTTAATATTTTTCTTTTAAGTTACTCGAAAATTTTTCTCTTTACTC

Protein	Signature genes	Signature genes Name	Protein_function
CP029080.1\|AWE55829.1\|2721451_2723116_-\|acetolactate-synthase,-catabolic	unknown	unknown	gnl\|CDD\|236312
CP029080.1\|AWE55873.1\|2727734_2728538_-\|tRNA-pseudouridine(38-40)-synthase	unknown	unknown	gnl\|CDD\|234577
CP029080.1\|AWE56144.1\|2719909_2720335_+\|toxin-beta-grasp-domain-protein	unknown	unknown	gnl\|CDD\|367591
CP029080.1\|AWE56252.1\|2733359_2733725_-\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
CP029080.1\|AWE57316.1\|2731542_2731911_-\|ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
CP029080.1\|AWE55697.1\|2732946_2733336_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
CP029080.1\|AWE56298.1\|2731927_2732872_-\|DNA-directed-RNA-polymerase,-alpha-subunit	unknown	unknown	gnl\|CDD\|235359
CP029080.1\|AWE55134.1\|2726645_2727038_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP029080.1\|AWE55569.1\|2730195_2731005_-\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|184207
CP029080.1\|AWE56496.1\|2713925_2714732_+\|DDE-domain-protein	unknown	unknown	gnl\|CDD\|222853
CP029080.1\|AWE55876.1\|2713602_2713884_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225511
CP029080.1\|AWE55875.1\|2711196_2713530_+\|polysaccharide-lyase-family-8,-N-terminal-alpha-helical-domain-protein	unknown	unknown	gnl\|CDD\|238517
CP029080.1\|AWE55557.1\|2720710_2721415_-\|alpha-acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
CP029080.1\|AWE56153.1\|2714728_2714869_-\|hypothetical-protein	unknown	unknown	unknown
CP029080.1\|AWE56702.1\|2718800_2719616_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319792
CP029080.1\|AWE55438.1\|2727057_2727495_-\|ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP029080.1\|AWE56325.1\|2729338_2730199_-\|energy-coupling-factor-transporter-ATP-binding-protein-EcfA-1	unknown	unknown	gnl\|CDD\|184205
CP029080.1\|AWE57091.1\|2728542_2729184_-\|cobalt-transport-family-protein	unknown	unknown	gnl\|CDD\|223692
CP029080.1\|AWE56920.1\|2715041_2715716_-\|peptidase-M23-family-protein	unknown	unknown	gnl\|CDD\|366703
CP029080.1\|AWE56018.1\|2717058_2718576_+\|glycosyl-transferases-group-1-family-protein	unknown	unknown	gnl\|CDD\|340855

Protein	Function_ID	Function_description	E-value
CP029080.1\|AWE55829.1\|2721451_2723116_-\|acetolactate-synthase,-catabolic	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
CP029080.1\|AWE55873.1\|2727734_2728538_-\|tRNA-pseudouridine(38-40)-synthase	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.32017e-120
CP029080.1\|AWE56144.1\|2719909_2720335_+\|toxin-beta-grasp-domain-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	6.70728e-35
CP029080.1\|AWE56252.1\|2733359_2733725_-\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	2.16257e-78
CP029080.1\|AWE57316.1\|2731542_2731911_-\|ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
CP029080.1\|AWE55697.1\|2732946_2733336_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.01588e-89
CP029080.1\|AWE56298.1\|2731927_2732872_-\|DNA-directed-RNA-polymerase,-alpha-subunit	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175
CP029080.1\|AWE55134.1\|2726645_2727038_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	1.87986e-83
CP029080.1\|AWE55569.1\|2730195_2731005_-\|ABC-transporter-family-protein	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
CP029080.1\|AWE56496.1\|2713925_2714732_+\|DDE-domain-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.47616e-49
CP029080.1\|AWE55876.1\|2713602_2713884_+\|transposase-family-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.62889e-13
CP029080.1\|AWE55875.1\|2711196_2713530_+\|polysaccharide-lyase-family-8,-N-terminal-alpha-helical-domain-protein	gnl\|CDD\|238517	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family. This family consists of a group of secreted bacterial lyase enzymes capable of acting on glycosaminoglycans, such as hyaluronan and chondroitin, in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen. These are broad-specificity glycosaminoglycan lyases which recognize uronyl residues in polysaccharides and cleave their glycosidic bonds via a beta-elimination reaction to form a double bond between C-4 and C-5 of the non-reducing terminal uronyl residues of released products. Substrates include chondroitin, chondroitin 4-sulfate, chondroitin 6-sulfate, and hyaluronic acid. Family members include chondroitin AC lyase, chondroitin abc lyase, xanthan lyase, and hyalurate lyase.	0
CP029080.1\|AWE55557.1\|2720710_2721415_-\|alpha-acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.05414e-118
CP029080.1\|AWE56702.1\|2718800_2719616_-\|hypothetical-protein	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.68683e-98
CP029080.1\|AWE55438.1\|2727057_2727495_-\|ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
CP029080.1\|AWE56325.1\|2729338_2730199_-\|energy-coupling-factor-transporter-ATP-binding-protein-EcfA-1	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
CP029080.1\|AWE57091.1\|2728542_2729184_-\|cobalt-transport-family-protein	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	2.56605e-36
CP029080.1\|AWE56920.1\|2715041_2715716_-\|peptidase-M23-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.05886e-22
CP029080.1\|AWE56018.1\|2717058_2718576_+\|glycosyl-transferases-group-1-family-protein	gnl\|CDD\|340855	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found in bacteria.	2.16153e-60

>CP029080.1|AWE55829.1|2721451_2723116_-|acetolactate-synthase,-catabolic
MTDKKYTAADIVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGIVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>CP029080.1|AWE55557.1|2720710_2721415_-|alpha-acetolactate-decarboxylase
MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHIRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIHDEDFTNANIDYKDISDEIREAE
>CP029080.1|AWE56144.1|2719909_2720335_+|toxin-beta-grasp-domain-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKNDDAKNLIDPSTIKQIQIVVK
>CP029080.1|AWE56702.1|2718800_2719616_-|hypothetical-protein
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVMTAVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILRHISAQYNVEFIPQRAFEGNETHYNFYFHSIGNHNKDRRILESLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>CP029080.1|AWE56018.1|2717058_2718576_+|glycosyl-transferases-group-1-family-protein
MTTYMLMYSIPEKAGGITSVMLNRSKLLAEKGYSCALLTLDDKNYDPLRAKLTNSGRLHKEVKIVNLYEELKMLYDVENTEIENKNMQTFEKLNLLNQEGFYIQKDEYEEKKYARYFKDNNYIMYKKWINGQLSHIDYFQNRKRIKRHVFQNKILRKEITFNDKNKMSEVKYLSNDGFCYLSYWYGDNENIVNIFYFDKNSKEVLNFKNNKMFHSYWLDKNLTSNDVLILDGIGTYPKVENMQNNDVKKIFTIHTNHFLSPYSYGAEIKPEFRNMLLNLKELDTLVVLTKEQKDDIIKQFGDYNNIKVIPNAVSFEENLTQNIREKNSIIVLQRFVAMKNITHIISAINIVRKKVKDVKLHIYGTGTQKENYTKLIKKLKLQDNVFIHDYAFDIRGLYTKASLSVLTSDYEGLPMSLLEAMSYGVPVISYPINYGPKSIIQNNINGIITKKKDNINELAKKIIHVLKKETLISQFSENARTTIKTNFSYEAVSKKWIELIDEKSK
>CP029080.1|AWE56920.1|2715041_2715716_-|peptidase-M23-family-protein
MEQIWIDKAKQFGVSVTWKDNSIIGFVMRPLINYDAIKNETTLKYAVPTTDCYEVFWGGDNELYNYHYLYPHQRYAIDLVIKENHKTYKKQGKVNTDYFCFGKDIIAPANGTVEKVVNGVQDNSIGSTNESQFLGNYIVIKHAENEYSLIAHLQQYSIIVNEGQNVKYGDIIGKVGNSGNSTEPHIHFQVMNDKNIEACTSLKIRFLNNRELIKGDVVCGLQGE
>CP029080.1|AWE56153.1|2714728_2714869_-|hypothetical-protein
MSQARDFLAYLVNSKRTPDSLVVDAFLFVIEYPVIEILDSGMSTIF
>CP029080.1|AWE56496.1|2713925_2714732_+|DDE-domain-protein
MCKVLKIPRSTYYDSIKRKDNKITKDDSNVERAVINIFNSNRKVFGTRRIKNNLNDKGLTVSRRKIGRIMKKHNLVSVYTKAKYKNHPKETNKKRIKNHLNRAFNREQPMETLVSDLTYVKVAGTWHYICLFIDLFNREIVGYSAGKNKDANLVSKAISRINHNLEQIKLFHTDRGKEFDNHLIDEVLETFKIKRSLSTKGCPYDNAVAEATMKAMKTEFVKQMQFENLEQLETELFDYVNWYNNFRPHSSLQYLTPVAFKNLHMKTV
>CP029080.1|AWE55876.1|2713602_2713884_+|transposase-family-protein
MTRERRSFSSEFKLQMVRLYENGKPRNEIIREYDLTPSALGKWIKQHQNTGTFNHQDNLSDEEKELIKLRKEVQHLKMENDILKQAALIMGRK
>CP029080.1|AWE55875.1|2711196_2713530_+|polysaccharide-lyase-family-8,-N-terminal-alpha-helical-domain-protein
MTYRMKKWQKLSTITLLMAGVITLSDGEFRSVDKHQIAVADTNTQTPNYEKLKNTWLDVNYGYDKYDESNPDMKKKFEATENEAKKLLSEMKTESGRTYLWESSKDIDTKSADMTRTYRNIEKIAEAMNHPKTTLKNDENKKKLKDALEWLHKNAYGKDPDKKVADLKTNFSKSAPQKNTNLNWWDYEIGTPKSLTNTLILLNGDISSDEKKKYTAPIKTFAPKSDEILSSVGKAEPAKGGNLVDIAKVKLLESIIEEDKDMTKNSIDSFNKVFTYVQSNSTGKERNGFYKDGSYIDHQDVPYTGAYGVVLLEGISQMMPMIKETPFKETSQNDTILKSWIDDGFMPLIYKGEMMDLSRGRAISRENETSHSASVTVMKSLLRLSDAMDESTKAKYKKIVKTSVKSDSSYKQNDYLSSYSDISKMKALMEDSTLSTNDLTQQLKIYNDMDRVTYHNKDLDFAFGLSMTSKNVARYESINNENLKGWHTGAGMSYLYNSDVKHYRDNFWATADMKRLAGTTTLDNEEPKENKNSDKTFVGGTKFDDQHASIGMEFENQDKTLTAKKSYFILNDKIVFLGTGIKNTDSSMNPVTTIENRKANGYTLYTDDKQTTNSDNQETNSVFLESTDTKKNIGYHFLNKSKINVKKESHTGKWSEINKSQKTEDKKDEYYEVTQKHSNSDNKYGYVLYPSLSKDVFKSKASQVTVVKQDDDFHVVKDNESVWAGVNYSDSAKTFEINGTKVEVKAKGMFILKKKDDKTYECSFYNPESTNTASDIE
>CP029080.1|AWE55134.1|2726645_2727038_-|30S-ribosomal-protein-S9
MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>CP029080.1|AWE55438.1|2727057_2727495_-|ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>CP029080.1|AWE55873.1|2727734_2728538_-|tRNA-pseudouridine(38-40)-synthase
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYFHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSLQND
>CP029080.1|AWE57091.1|2728542_2729184_-|cobalt-transport-family-protein
MRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVQRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>CP029080.1|AWE56325.1|2729338_2730199_-|energy-coupling-factor-transporter-ATP-binding-protein-EcfA-1
MSIRFNDVSYTYQQGTPYEHQAIHDINTEFEQGKYYAIVGQTGSGKSTLIQNINALIKPTSGTVTIDDVTVTHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMDLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSVLAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKEKEKLAGWHIGLPDIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>CP029080.1|AWE55569.1|2730195_2731005_-|ABC-transporter-family-protein
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIENVKSGEIFYNNQTITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRIVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTAIEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVNQL
>CP029080.1|AWE57316.1|2731542_2731911_-|ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>CP029080.1|AWE56298.1|2731927_2732872_-|DNA-directed-RNA-polymerase,-alpha-subunit
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>CP029080.1|AWE55697.1|2732946_2733336_-|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV
>CP029080.1|AWE56252.1|2733359_2733725_-|30S-ribosomal-protein-S13
MARIAGVDIPREKRVVISLTYIYGIGTSTAQKILEEANVSADTRVKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKKK

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Crispr_ID: CP029080_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029080_6

2763291-2763383

Orphan

Consensus_repeat	Method
ACATTATTGTAAGCTGACTTTTCGTCACCTTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029080_6

>merge|CP029080|6|2763291-2763383|CRISPRCasFinder
ACATTATTGTAAGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGTACATTATTGTATGCTGACTTTTCGTCACCTTCT

>CP029080|6|6|2763291-2763383|CRISPRCasFinder
ACATTATTGTAAGCTGACTTTTCGTCACCTTCT	GTGTTGGGGCCCCGTTCCCCAACTTGT
ACATTATTGTATGCTGACTTTTCGTCACCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029080.1\|AWE55851.1\|2765435_2765882_-\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029080.1\|AWE55269.1\|2766377_2767637_-\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029080.1\|AWE56495.1\|2757987_2759253_-\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029080.1\|AWE56069.1\|2759884_2760649_-\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP029080.1\|AWE56685.1\|2764590_2765190_-\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029080.1\|AWE55368.1\|2768195_2768702_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029080.1\|AWE56979.1\|2767699_2768194_+\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP029080.1\|AWE55153.1\|2753793_2753958_+\|hypothetical-protein	unknown	unknown	unknown
CP029080.1\|AWE56453.1\|2769903_2770509_-\|AAA-domain-protein	unknown	unknown	gnl\|CDD\|226628
CP029080.1\|AWE55283.1\|2765196_2765430_-\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP029080.1\|AWE56017.1\|2754202_2754520_+\|putative-membrane-protein	unknown	unknown	unknown
CP029080.1\|AWE55964.1\|2751235_2752099_+\|eamA-like-transporter-family-protein	unknown	unknown	gnl\|CDD\|227309
CP029080.1\|AWE55597.1\|2765895_2766381_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029080.1\|AWE56095.1\|2760812_2761253_+\|marR-family-protein	unknown	unknown	gnl\|CDD\|197670
CP029080.1\|AWE57426.1\|2754703_2757871_-\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029080.1\|AWE55583.1\|2761245_2762457_+\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|341042
CP029080.1\|AWE56381.1\|2752752_2753661_-\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029080.1\|AWE57045.1\|2768731_2769736_-\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029080.1\|AWE57230.1\|2762558_2762909_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029080.1\|AWE56408.1\|2763548_2764478_-\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250

Protein	Function_ID	Function_description	E-value
CP029080.1\|AWE55851.1\|2765435_2765882_-\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
CP029080.1\|AWE56495.1\|2757987_2759253_-\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	3.74651e-143
CP029080.1\|AWE56069.1\|2759884_2760649_-\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	5.4045e-38
CP029080.1\|AWE56685.1\|2764590_2765190_-\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.35833e-67
CP029080.1\|AWE55368.1\|2768195_2768702_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	7.75988e-66
CP029080.1\|AWE56979.1\|2767699_2768194_+\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	4.41307e-97
CP029080.1\|AWE56453.1\|2769903_2770509_-\|AAA-domain-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114
CP029080.1\|AWE55283.1\|2765196_2765430_-\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	5.94445e-24
CP029080.1\|AWE55269.1\|2766377_2767637_-\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.57792e-158
CP029080.1\|AWE55964.1\|2751235_2752099_+\|eamA-like-transporter-family-protein	gnl\|CDD\|227309	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism].	1.5205e-114
CP029080.1\|AWE55597.1\|2765895_2766381_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	1.12631e-49
CP029080.1\|AWE56095.1\|2760812_2761253_+\|marR-family-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.18875e-14
CP029080.1\|AWE57426.1\|2754703_2757871_-\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029080.1\|AWE55583.1\|2761245_2762457_+\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.02108e-73
CP029080.1\|AWE56381.1\|2752752_2753661_-\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	3.9513e-43
CP029080.1\|AWE57045.1\|2768731_2769736_-\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	2.31627e-131
CP029080.1\|AWE57230.1\|2762558_2762909_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029080.1\|AWE56408.1\|2763548_2764478_-\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	5.95863e-143

>CP029080.1|AWE57230.1|2762558_2762909_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029080.1|AWE55583.1|2761245_2762457_+|sugar-(and-other)-transporter-family-protein
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNSKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLLLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGIGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029080.1|AWE56095.1|2760812_2761253_+|marR-family-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITAENSLEDKRQKFLTLTPKGHALYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP029080.1|AWE56069.1|2759884_2760649_-|glyoxalase-like-domain-protein
MILKFDHIIHYIDRLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029080.1|AWE56495.1|2757987_2759253_-|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSTKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKTDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029080.1|AWE57426.1|2754703_2757871_-|swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPILAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029080.1|AWE56017.1|2754202_2754520_+|putative-membrane-protein
MQFYLILLALLYLVVSFISIFKMEVIFTRILRIIMGVLLLFVVALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIALF
>CP029080.1|AWE55153.1|2753793_2753958_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029080.1|AWE56381.1|2752752_2753661_-|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINYIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>CP029080.1|AWE55964.1|2751235_2752099_+|eamA-like-transporter-family-protein
MQFLDFLIALLPALFWGSVVLINVFVGGGPYNQIRGTTLGALIVGLGLLITGFAKFNNPTVIIVGLISGALWAFGQANQLKSISLIGVSNTMPVSTGMQLVGTTLFSVIFLGEWSSMTQIIFGLIAMILLVTGVALTSLKAKNERQSDNPEFKKAMGILIVSTVGYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKSTALNLLPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRRQMTGIWAGIIIIVIAAIILGNLK
>CP029080.1|AWE56408.1|2763548_2764478_-|molybdenum-cofactor-biosynthesis-protein-A
MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEINPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKTFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029080.1|AWE56685.1|2764590_2765190_-|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPPYWYKNINYQHDLDTLIQNL
>CP029080.1|AWE55283.1|2765196_2765430_-|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALSVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029080.1|AWE55851.1|2765435_2765882_-|molybdopterin-synthase-catalytic-subunit
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029080.1|AWE55597.1|2765895_2766381_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDLQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVENQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLLNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLI
>CP029080.1|AWE55269.1|2766377_2767637_-|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKSVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029080.1|AWE56979.1|2767699_2768194_+|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQLDQ
>CP029080.1|AWE55368.1|2768195_2768702_-|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRNFDTDKGGQCVRQLLQADNVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAKRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029080.1|AWE57045.1|2768731_2769736_-|thiF-family-protein
MSQERYSRQILFKQIGEIGQNKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTDQPIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029080.1|AWE56453.1|2769903_2770509_-|AAA-domain-protein
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029080_3	3.1\|1276324\|34\|CP029080\|CRISPRCasFinder	1276324-1276357	34	CP029080.1	1509565-1509598	0	1.0
CP029080_4	4.1\|1282796\|32\|CP029080\|CRISPRCasFinder	1282796-1282827	32	CP029080.1	11582-11613	0	1.0
CP029080_4	4.1\|1282796\|32\|CP029080\|CRISPRCasFinder	1282796-1282827	32	CP029080.1	11638-11669	0	1.0
CP029080_4	4.1\|1282796\|32\|CP029080\|CRISPRCasFinder	1282796-1282827	32	CP029080.1	170151-170182	0	1.0
CP029080_4	4.1\|1282796\|32\|CP029080\|CRISPRCasFinder	1282796-1282827	32	CP029080.1	719934-719965	0	1.0
CP029080_4	4.1\|1282796\|32\|CP029080\|CRISPRCasFinder	1282796-1282827	32	CP029080.1	1370134-1370165	1	0.969
CP029080_4	4.1\|1282796\|32\|CP029080\|CRISPRCasFinder	1282796-1282827	32	CP029080.1	2371414-2371445	2	0.938

1. spacer 3.1|1276324|34|CP029080|CRISPRCasFinder matches to position: 1509565-1509598, mismatch: 0, identity: 1.0

ttgttggggcccacaccccaacttgcacattatc	CRISPR spacer
ttgttggggcccacaccccaacttgcacattatc	Protospacer
**********************************

2. spacer 4.1|1282796|32|CP029080|CRISPRCasFinder matches to position: 11582-11613, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

3. spacer 4.1|1282796|32|CP029080|CRISPRCasFinder matches to position: 11638-11669, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

4. spacer 4.1|1282796|32|CP029080|CRISPRCasFinder matches to position: 170151-170182, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

5. spacer 4.1|1282796|32|CP029080|CRISPRCasFinder matches to position: 719934-719965, mismatch: 0, identity: 1.0

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgactttccgc	Protospacer
********************************

6. spacer 4.1|1282796|32|CP029080|CRISPRCasFinder matches to position: 1370134-1370165, mismatch: 1, identity: 0.969

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacattattgtaagctgacttttcgc	Protospacer
****************************.***

7. spacer 4.1|1282796|32|CP029080|CRISPRCasFinder matches to position: 2371414-2371445, mismatch: 2, identity: 0.938

aacttgcacattattgtaagctgactttccgc	CRISPR spacer
aacttgcacgttattgaaagctgactttccgc	Protospacer
*********.****** ***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1208570 : 1216389

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE56554.1\|1208570_1209626_-	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AWE56820.1\|1209625_1210312_-	response regulator	NA	NA	NA	NA
AWE57454.1\|1210286_1210760_-	doxX family protein	NA	NA	NA	NA
AWE56324.1\|1211100_1211541_-	electron transfer DM13 family protein	NA	NA	NA	NA
AWE57287.1\|1211820_1212405_-	putative membrane protein	NA	NA	NA	NA
AWE57025.1\|1212503_1213217_-	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWE56725.1\|1213220_1213640_-	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWE55383.1\|1213641_1214310_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.4e-66	57.5
AWE55510.1\|1214660_1215254_+	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	8.9e-39	44.0
AWE55950.1\|1215237_1216389_+	chorismate binding enzyme family protein	S4VNU7	Pandoravirus	2.1e-23	36.1

DBSCAN-SWA_2

1228365 : 1242641

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE57060.1\|1228365_1229424_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	2.6e-20	26.9
AWE56881.1\|1229581_1230130_+	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWE57350.1\|1230817_1231735_-	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
AWE55951.1\|1232004_1233510_-	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.6e-58	32.2
AWE56094.1\|1233850_1234351_-	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWE56758.1\|1234370_1235237_-	multidrug resistance efflux transporter family protein	NA	NA	NA	NA
AWE57208.1\|1236038_1236437_+	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWE55288.1\|1236399_1238505_+	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWE55370.1\|1238622_1239594_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	3.2e-171	91.3
AWE57012.1\|1239968_1240940_+	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	1.0e-140	79.9
AWE57103.1\|1240926_1241883_+	fecCD transport family protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWE56677.1\|1241879_1242641_+	ABC transporter family protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.7e-16	30.6

DBSCAN-SWA_3

1484903 : 1493376

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE55590.1\|1484903_1485386_+	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7
AWE55372.1\|1485372_1486497_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWE56822.1\|1486500_1487205_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	4.0e-46	41.2
AWE56113.1\|1487204_1487468_+	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWE56527.1\|1487469_1488141_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWE55317.1\|1488133_1490323_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.5e-141	39.8
AWE57253.1\|1490301_1491786_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.5e-46	31.9
AWE57079.1\|1491778_1492807_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	41.7
AWE55975.1\|1492809_1493376_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-29	39.6

DBSCAN-SWA_4

1544963 : 1589525

Staphylococcus_phage(75.0%)

capsid,holin,terminase,portal,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE55745.1\|1544963_1545446_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2
AWE55127.1\|1545507_1546647_-	HIGH Nucleotidyl Transferase family protein	NA	NA	NA	NA
AWE57107.1\|1546773_1547331_+	hypothetical protein	NA	NA	NA	NA
AWE55475.1\|1547410_1547584_+	ribosomal protein L32	NA	NA	NA	NA
AWE57441.1\|1547700_1549086_-	recombinase family protein	I1W625	Staphylococcus_phage	2.5e-265	100.0
AWE56954.1\|1549292_1549973_-	pemK-like family protein	A0A2H4PQQ5	Staphylococcus_phage	5.1e-123	100.0
AWE55857.1\|1550008_1550728_-	helix-turn-helix domain protein	A0A2H4PQQ2	Staphylococcus_phage	1.3e-132	100.0
AWE57217.1\|1550869_1551088_+	helix-turn-helix family protein	A0A2H4PQQ0	Staphylococcus_phage	1.7e-35	100.0
AWE56502.1\|1551103_1551892_+	BRO family, N-terminal domain protein	A0EWP1	Staphylococcus_virus	4.2e-145	100.0
AWE55830.1\|1551908_1552103_+	hypothetical protein	E9LT75	Staphylococcus_phage	7.9e-29	98.4
AWE56986.1\|1552155_1552332_+	hypothetical protein	S4SVC9	Staphylococcus_phage	9.7e-26	100.0
AWE57510.1\|1552306_1552537_-	hypothetical protein	R4IG40	Staphylococcus_phage	2.3e-35	100.0
AWE56735.1\|1552586_1552724_+	hypothetical protein	S4SX85	Staphylococcus_phage	3.2e-16	100.0
AWE56418.1\|1552972_1553233_+	hypothetical protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
AWE55780.1\|1553245_1553782_+	bacteriophage Mu Gam like family protein	A0A2I6PD93	Staphylococcus_phage	1.7e-81	100.0
AWE55501.1\|1553782_1554433_+	ERF superfamily protein	A0A0F6N3I5	Staphylococcus_phage	1.1e-119	100.0
AWE55388.1\|1554429_1554873_+	single-stranded DNA-binding family protein	A0A2I6PD99	Staphylococcus_phage	1.8e-76	100.0
AWE55398.1\|1554884_1555559_+	hypothetical protein	A1KX69	Staphylococcus_virus	3.9e-131	100.0
AWE55456.1\|1555697_1555979_-	pTS system, fructose subfamily, IIA component domain protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
AWE56303.1\|1556044_1556815_+	conserved phage family protein	A0A1W6JQ00	Staphylococcus_phage	6.4e-122	100.0
AWE56958.1\|1556824_1557604_+	istB-like ATP binding family protein	A0A1X9H042	Staphylococcus_phage	1.6e-144	98.8
AWE55664.1\|1557768_1557990_+	hypothetical protein	A0A1W6JQ35	Staphylococcus_phage	1.7e-35	100.0
AWE57433.1\|1557999_1558404_+	endodeoxyribonuclease RusA family protein	A0A075M042	Staphylococcus_phage	1.0e-70	97.0
AWE56625.1\|1558416_1558785_+	PVL ORF-50-like family protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
AWE56984.1\|1558788_1559031_+	phage family protein	Q4ZBT7	Staphylococcus_virus	4.4e-37	92.5
AWE55033.1\|1559045_1559447_+	hypothetical protein	A0A0H4IPW3	Staphylococcus_phage	5.6e-53	80.6
AWE56993.1\|1559446_1559722_+	hypothetical protein	Q4ZCN9	Staphylococcus_virus	3.0e-42	94.5
AWE55680.1\|1559714_1559951_+	hypothetical protein	A1KX83	Staphylococcus_virus	4.9e-33	94.9
AWE56640.1\|1559955_1560126_+	hypothetical protein	A7TWH6	Staphylococcus_phage	6.9e-21	92.9
AWE57241.1\|1560118_1560649_+	dUTPase family protein	B2ZYX2	Staphylococcus_phage	1.2e-95	99.4
AWE56945.1\|1560685_1560892_+	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
AWE55051.1\|1560888_1561275_+	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
AWE56004.1\|1561271_1561445_+	transcriptional activator RinB family protein	A0A0E3TAH3	Staphylococcus_phage	4.9e-22	98.2
AWE56963.1\|1561445_1561592_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	2.2e-15	100.0
AWE57132.1\|1561615_1562038_+	phage transcriptional regulator, RinA family protein	S4V7K2	Staphylococcus_phage	6.1e-74	99.3
AWE57465.1\|1562224_1562665_+\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	4.8e-74	100.0
AWE57264.1\|1562651_1563929_+\|terminase	phage terminase, large subunit, PBSX family	A0EWS5	Staphylococcus_virus	8.1e-247	98.8
AWE56829.1\|1563939_1565475_+\|portal	phage portal protein, SPP1 family	A1KX25	Staphylococcus_virus	2.7e-289	98.8
AWE56771.1\|1565481_1566477_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	E0Y3K7	Staphylococcus_virus	1.3e-180	97.3
AWE57309.1\|1566558_1566732_+	hypothetical protein	NA	NA	NA	NA
AWE55260.1\|1566863_1567478_+	hypothetical protein	I1W646	Staphylococcus_phage	2.9e-40	100.0
AWE56980.1\|1567491_1568466_+\|capsid	phage major capsid protein, HK97 family	I1W645	Staphylococcus_phage	7.7e-181	98.5
AWE55185.1\|1568487_1568775_+	hypothetical protein	E9LT47	Staphylococcus_phage	6.8e-45	98.9
AWE56617.1\|1568783_1569116_+\|head,tail	phage gp6-like head-tail connector family protein	E0Y3L2	Staphylococcus_virus	7.1e-54	100.0
AWE56506.1\|1569414_1569762_+	hypothetical protein	I1W643	Staphylococcus_phage	5.3e-60	100.0
AWE54998.1\|1569773_1570157_+	hypothetical protein	E0Y3L5	Staphylococcus_virus	2.6e-68	100.0
AWE56271.1\|1570175_1570757_+\|tail	phage major tail protein, TP901-1 family	Q8SDU0	Staphylococcus_phage	4.9e-106	100.0
AWE57189.1\|1570818_1571184_+	phage family protein	Q8SDT9	Staphylococcus_phage	2.8e-59	100.0
AWE56318.1\|1571213_1571558_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AWE55513.1\|1571574_1575039_+	putative membrane protein	Q4ZDU6	Staphylococcus_virus	3.9e-251	91.9
AWE55831.1\|1575051_1575999_+\|tail	phage tail family protein	A0EWU0	Staphylococcus_virus	3.6e-183	100.0
AWE56343.1\|1576007_1577909_+\|tail	prophage endopeptidase tail family protein	Q8SDT5	Staphylococcus_phage	0.0e+00	99.8
AWE57035.1\|1577923_1579834_+	putative minor structural protein	A0A0F6N4K2	Staphylococcus_phage	0.0e+00	99.2
AWE57411.1\|1579833_1581657_+	hypothetical protein	A0A0F6N3G2	Staphylococcus_phage	0.0e+00	99.7
AWE55355.1\|1581656_1582034_+	hypothetical protein	W5R9M2	Staphylococcus_phage	5.8e-60	98.4
AWE55016.1\|1582034_1582217_+	hypothetical protein	A0A2H4PQV2	Staphylococcus_phage	1.9e-29	100.0
AWE56051.1\|1582257_1582557_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWE56481.1\|1582693_1584592_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	B2ZZ02	Staphylococcus_phage	0.0e+00	98.6
AWE55131.1\|1584604_1585777_+	collagen triple helix repeat family protein	A0A2I6PCW8	Staphylococcus_phage	4.1e-197	99.2
AWE55431.1\|1585782_1586178_+	hypothetical protein	A0A2H4PQP8	Staphylococcus_phage	5.1e-67	98.5
AWE55186.1\|1586233_1586671_+\|holin	holin, phage phi LC3 family	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
AWE55220.1\|1586651_1588097_+	CHAP domain protein	A0A2H4PQR3	Staphylococcus_phage	8.2e-296	100.0
AWE55984.1\|1588485_1589073_+	hypothetical protein	Q4ZBG7	Staphylococcus_virus	5.4e-97	100.0
AWE55555.1\|1589069_1589525_+	putative gp62	B7T0L3	Staphylococcus_virus	2.7e-72	100.0

DBSCAN-SWA_5

1790761 : 1805219

Staphylococcus_phage(52.63%)

head,terminase,integrase,portal

attL 1784584:1784601|attR 1808055:1808072

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1784584:1784601	attL	NA	NA	NA	NA
AWE57488.1\|1790761_1791469_-\|integrase	phage integrase, N-terminal SAM-like domain protein	V9QKF1	Oenococcus_phage	4.7e-10	26.2
AWE55570.1\|1791521_1792217_-	host cell surface-exposed lipofamily protein	A0A2H4J5B8	uncultured_Caudovirales_phage	1.4e-06	50.9
AWE57157.1\|1792228_1792612_-	hypothetical protein	NA	NA	NA	NA
AWE56893.1\|1792758_1793124_-	helix-turn-helix domain protein	R9QTP6	Staphylococcus_phage	1.8e-21	47.9
AWE55547.1\|1793546_1793828_+	hypothetical protein	NA	NA	NA	NA
AWE57503.1\|1793998_1794160_+	hypothetical protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AWE56315.1\|1794246_1794564_+	hypothetical protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AWE56792.1\|1794553_1794820_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.9e-18	53.6
AWE55734.1\|1794824_1795361_+	glycosyl hydrolases 17 family protein	A0A0H3U480	Staphylococcus_phage	1.1e-75	81.4
AWE55938.1\|1795361_1796141_+	bacterial dnaA family protein	A0A1W6JPW0	Staphylococcus_phage	9.3e-129	88.8
AWE56280.1\|1796167_1796716_+	putative single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	1.7e-92	92.9
AWE57538.1\|1796729_1797668_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	4.8e-47	48.1
AWE55239.1\|1797668_1797959_+	phage family protein	A0A223LIA9	Staphylococcus_phage	5.5e-18	58.1
AWE55995.1\|1797973_1798132_+	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	7.9e-19	90.4
AWE55771.1\|1798137_1798314_+	hypothetical protein	NA	NA	NA	NA
AWE55113.1\|1798310_1798448_+	hypothetical protein	NA	NA	NA	NA
AWE55913.1\|1798440_1798971_+	mazG nucleotide pyrophosphohydrolase domain protein	A0A1P8VVP1	Streptococcus_phage	8.0e-23	39.1
AWE56763.1\|1799216_1799681_+	putative small GTP-binding domain protein	C9E2P0	Enterococcus_phage	2.5e-20	43.7
AWE56180.1\|1799765_1799915_+	putative membrane protein	NA	NA	NA	NA
AWE56672.1\|1799957_1800446_+	sigma-70, region 4 family protein	R9TMH4	Paenibacillus_phage	1.9e-07	27.7
AWE57574.1\|1800597_1801026_+	homeo-like domain protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AWE56741.1\|1801012_1802287_+\|terminase	phage terminase, large subunit, PBSX family	Q4ZE37	Staphylococcus_virus	1.2e-194	76.4
AWE55056.1\|1802299_1803748_+\|portal	phage portal protein, SPP1 family	Q4ZE36	Staphylococcus_virus	4.1e-194	69.2
AWE57313.1\|1803737_1805219_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZE35	Staphylococcus_virus	3.7e-110	61.9
1808055:1808072	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2076962 : 2085274

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE56825.1\|2076962_2077748_-	AAA domain protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
AWE57207.1\|2077873_2078764_-	putative endonuclease 4	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AWE57051.1\|2078773_2080120_-	DEAD/DEAH box helicase family protein	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
AWE57126.1\|2080233_2081334_-	NIF3 family protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
AWE55219.1\|2081336_2082014_-	hypothetical protein	NA	NA	NA	NA
AWE56834.1\|2082144_2083251_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AWE56585.1\|2083474_2085274_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-53	35.8

DBSCAN-SWA_7

2154588 : 2163632

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE56836.1\|2154588_2155107_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8
AWE57151.1\|2155128_2157402_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.3e-65	29.5
AWE56564.1\|2157605_2159885_-	protein-export membrane protein SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AWE56091.1\|2160159_2160420_-	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWE55663.1\|2160438_2161578_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWE57515.1\|2161600_2162626_-\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AWE55358.1\|2162627_2163632_-	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

2288727 : 2336849

Staphylococcus_phage(86.84%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE56098.1\|2288727_2293518_-	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	1.7e-292	87.6
AWE56703.1\|2293842_2294154_-	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	6.9e-51	97.1
AWE55809.1\|2294175_2296590_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.7
AWE56501.1\|2296881_2298063_-	sugar (and other) transporter family protein	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
AWE55252.1\|2298172_2299126_+	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	1.4e-78	99.3
AWE55537.1\|2299122_2299686_+	methyltransferase domain protein	A0A2H4PQV0	Staphylococcus_phage	4.1e-102	98.4
AWE55417.1\|2299802_2300204_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWE56707.1\|2300774_2301602_-	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWE57522.1\|2301604_2301721_-	hypothetical protein	NA	NA	NA	NA
AWE56606.1\|2301835_2302837_+	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AWE55091.1\|2302958_2303423_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AWE55065.1\|2303435_2304617_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	2.8e-225	99.2
AWE57056.1\|2304627_2305260_-	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	2.1e-110	97.6
AWE56367.1\|2305266_2306310_-	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-195	98.8
AWE56745.1\|2306791_2308294_-	L-lysine 6-monooxygenase family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AWE55644.1\|2309250_2310543_+	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	3.0e-217	94.9
AWE55189.1\|2310629_2311484_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWE55926.1\|2311758_2311983_-	hypothetical protein	NA	NA	NA	NA
AWE56284.1\|2312181_2312652_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	3.8e-69	85.2
AWE55055.1\|2312968_2313208_+	comK family protein	NA	NA	NA	NA
AWE55144.1\|2313194_2313638_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.1e-49	77.9
AWE56798.1\|2313934_2314141_+	putative membrane protein	NA	NA	NA	NA
AWE55862.1\|2314150_2314570_+\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWE55468.1\|2314736_2315357_+\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWE55216.1\|2315856_2316570_-	transaldolase	M1PR54	Cyanophage	1.2e-18	35.3
AWE55339.1\|2316828_2317131_+	putative membrane protein	NA	NA	NA	NA
AWE57239.1\|2317386_2317752_+	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	6.2e-59	99.2
AWE57259.1\|2317748_2318102_+	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	2.7e-19	91.5
AWE55642.1\|2318351_2319185_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.3
AWE55777.1\|2319396_2320305_-	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
AWE55837.1\|2320429_2321623_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AWE56479.1\|2321994_2323587_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
AWE57361.1\|2323966_2324737_-	alpha/beta hydrolase family protein	A0A2H4PQM6	Staphylococcus_phage	6.8e-140	97.6
AWE55965.1\|2324717_2325197_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AWE55614.1\|2325256_2325514_+	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	1.0e-44	97.6
AWE55172.1\|2325510_2326512_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.1e-185	97.6
AWE56432.1\|2326516_2327995_-	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.0e-277	95.1
AWE55420.1\|2328153_2328636_-	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	1.9e-79	98.6
AWE55762.1\|2328947_2329562_+	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	4.6e-22	68.1
AWE55855.1\|2329642_2330638_+	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	1.9e-73	97.2
AWE57288.1\|2330713_2331340_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-85	84.1
AWE55724.1\|2331380_2331722_+	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	4.8e-53	91.2
AWE56831.1\|2331923_2332403_-	DDE domain protein	A0A2I7SC85	Paenibacillus_phage	2.8e-51	62.3
AWE56780.1\|2332429_2332729_-	HTH-like domain protein	A0A2H4PQV6	Staphylococcus_phage	1.7e-25	89.7
AWE55379.1\|2332770_2333052_-\|transposase	transposase family protein	A0A0C5AJ30	Paenibacillus_phage	6.5e-24	64.5
AWE56917.1\|2333443_2333620_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	4.1e-24	91.4
AWE55155.1\|2333929_2334583_-	hypothetical protein	NA	NA	NA	NA
AWE55218.1\|2334592_2336299_-	description family protein	NA	NA	NA	NA
AWE56539.1\|2336567_2336849_+\|transposase	transposase family protein	A0A0C5AJ30	Paenibacillus_phage	6.5e-24	64.5

DBSCAN-SWA_9

2466824 : 2512614

Staphylococcus_phage(98.51%)

holin,capsid,integrase,portal,tail,protease,head

attL 2486248:2486265|attR 2510595:2510612

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWE55735.1\|2466824_2467022_+	phospholipase C domain protein	A0A1P8L6A7	Staphylococcus_phage	8.3e-26	93.8
AWE55335.1\|2467393_2467573_+	putative membrane protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AWE57100.1\|2467652_2467808_-	hypothetical protein	A0A1P8L6A1	Staphylococcus_phage	1.4e-20	100.0
AWE56719.1\|2467952_2468144_+	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWE56139.1\|2468196_2468547_-	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWE57052.1\|2469230_2469680_+	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AWE55330.1\|2469774_2470071_-	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWE55987.1\|2470759_2471251_-	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AWE56696.1\|2471441_2472197_-	CHAP domain protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AWE55384.1\|2472208_2472463_-\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	3.4e-40	98.8
AWE56211.1\|2472674_2472809_-	putative membrane protein	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
AWE55265.1\|2473000_2473297_-	hypothetical protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AWE55683.1\|2473354_2473642_-	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AWE55480.1\|2473688_2473841_-	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AWE55249.1\|2473830_2477616_-	phage minor structural, N-terminal region domain protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.4
AWE57274.1\|2477631_2479116_-\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AWE55099.1\|2479112_2483642_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A2I6PDK2	Staphylococcus_phage	0.0e+00	99.8
AWE56769.1\|2483698_2483836_-	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AWE55959.1\|2483886_2484237_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AWE57312.1\|2484286_2484427_-	bacterial Ig-like domain family protein	A0A2I6PDK6	Staphylococcus_phage	2.5e-16	100.0
AWE57030.1\|2484552_2485197_-\|tail	phage major tail, phi13 family protein	A0A1X9H0J2	Staphylococcus_phage	1.5e-119	100.0
AWE55658.1\|2485197_2485605_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AWE55445.1\|2485601_2486006_-	hypothetical protein	G4KNQ5	Staphylococcus_phage	2.1e-68	99.3
AWE56426.1\|2486002_2486365_-\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2486248:2486265	attL	NA	NA	NA	NA
AWE55108.1\|2486348_2486633_-\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWE56195.1\|2486622_2486907_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AWE57019.1\|2486926_2488072_-\|capsid	phage major capsid protein, HK97 family	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AWE56857.1\|2488095_2488833_-\|protease	clp protease family protein	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AWE55623.1\|2488816_2490004_-\|portal	phage portal protein, HK97 family	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AWE55103.1\|2490019_2491681_-	phage Terminase family protein	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	99.8
AWE56768.1\|2491677_2492022_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWE57278.1\|2492152_2492452_-	HNH endonuclease family protein	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AWE56166.1\|2492683_2493100_-	phage transcriptional regulator, RinA family protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AWE55921.1\|2493127_2493328_-	hypothetical protein	A0A2I6PDV9	Staphylococcus_phage	4.0e-28	98.5
AWE56996.1\|2493327_2493477_-	transcriptional activator RinB family protein	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AWE56451.1\|2493473_2493860_-	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
AWE55080.1\|2493856_2494063_-	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
AWE57275.1\|2494059_2494305_-	putative membrane protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
AWE56376.1\|2494341_2494878_-	dUTPase family protein	A0A0H3U2Z8	Staphylococcus_phage	7.2e-96	100.0
AWE56607.1\|2494870_2495041_-	hypothetical protein	A0A0H3U4U6	Staphylococcus_phage	8.2e-22	100.0
AWE55455.1\|2495027_2495282_-	hypothetical protein	A0A0H3U469	Staphylococcus_phage	5.0e-39	100.0
AWE55525.1\|2495296_2495539_-	phage family protein	Q4ZDP7	Staphylococcus_virus	2.1e-39	95.0
AWE55737.1\|2495542_2495911_-	PVL ORF-50-like family protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
AWE57363.1\|2495923_2496328_-	endodeoxyribonuclease RusA family protein	A0EWX6	Staphylococcus_phage	1.9e-72	100.0
AWE55709.1\|2496336_2496555_-	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
AWE57303.1\|2496561_2497455_-	dnaD domain protein	A0A2I6PDG7	Staphylococcus_phage	5.5e-141	99.3
AWE56674.1\|2497484_2497955_-	single-stranded DNA-binding family protein	A0EWX3	Staphylococcus_phage	1.3e-80	98.7
AWE55338.1\|2497955_2498441_-	beta-lactamase superfamily domain protein	A0A2I6PDI9	Staphylococcus_phage	9.4e-87	100.0
AWE56872.1\|2498653_2499574_-	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AWE55374.1\|2499575_2501519_-	hypothetical protein	S4V9K6	Staphylococcus_phage	0.0e+00	99.8
AWE55872.1\|2501799_2502060_-	hypothetical protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
AWE55505.1\|2502064_2502367_-	hypothetical protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
AWE57431.1\|2502461_2502623_-	hypothetical protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
AWE57194.1\|2502619_2502943_-	hypothetical protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
AWE55966.1\|2502997_2503378_+	hypothetical protein	Q9T1Z5	Staphylococcus_phage	3.4e-68	99.2
AWE56998.1\|2503364_2503562_-	putative phi PVL orf 35-like protein	O80075	Staphylococcus_phage	3.5e-24	87.7
AWE57254.1\|2503577_2504330_-	phage antirepressor KilAC domain protein	M9NTH5	Staphylococcus_phage	1.1e-139	100.0
AWE56888.1\|2504380_2504710_+	hypothetical protein	M9NS98	Staphylococcus_phage	2.7e-53	100.0
AWE55558.1\|2504947_2505193_-	helix-turn-helix domain protein	A0A2I6PF09	Staphylococcus_phage	6.9e-38	100.0
AWE56847.1\|2505325_2506039_+	helix-turn-helix family protein	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
AWE56468.1\|2506054_2506987_+	exonuclease family protein	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
AWE56460.1\|2507537_2507720_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
AWE56334.1\|2507819_2508284_+	putative lipoprotein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
AWE57368.1\|2508342_2509380_+\|integrase	integrase	A0EWV2	Staphylococcus_phage	2.0e-179	99.7
AWE56104.1\|2509436_2510261_+	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
AWE57139.1\|2510517_2511537_-	leucotoxin LukDv	A0A2I6PEU3	Staphylococcus_phage	2.6e-54	39.8
2510595:2510612	attR	NA	NA	NA	NA
AWE55892.1\|2511558_2512614_-	hypothetical protein	A0A2I6PER8	Staphylococcus_phage	6.0e-38	34.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029080

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection