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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029085 Staphylococcus aureus strain AR462 plasmid unnamed1, complete sequence 0 crisprs csa3 0 0 0 0
CP029086 Staphylococcus aureus strain AR462 chromosome, complete genome 8 crisprs cas3,DEDDh,csa3,RT,WYL 5 1 5 0

Results visualization

1. CP029086
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_1 180694-180778 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_2 606237-606318 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_3 734881-734961 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_5 855245-855325 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_6 1737484-1737585 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_7 2133590-2133668 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_8 2182417-2182498 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029086_9 2447373-2447530 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029086_2 2.1|606261|34|CP029086|CRISPRCasFinder 606261-606294 34 CP029086.1 2133589-2133622 0 1.0
CP029086_2 2.1|606261|34|CP029086|CRISPRCasFinder 606261-606294 34 CP029086.1 2447221-2447254 0 1.0
CP029086_1 1.1|180720|33|CP029086|CRISPRCasFinder 180720-180752 33 CP029086.1 2139148-2139180 1 0.97
CP029086_1 1.1|180720|33|CP029086|CRISPRCasFinder 180720-180752 33 CP029086.1 2660641-2660673 1 0.97
CP029086_2 2.1|606261|34|CP029086|CRISPRCasFinder 606261-606294 34 CP029086.1 300717-300750 1 0.971
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2146330-2146360 1 0.968
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2146386-2146416 1 0.968
CP029086_7 7.1|2133614|31|CP029086|CRISPRCasFinder 2133614-2133644 31 CP029086.1 1622416-1622446 1 0.968
CP029086_8 8.1|2182441|34|CP029086|CRISPRCasFinder 2182441-2182474 34 CP029086.1 2660640-2660673 1 0.971
CP029086_2 2.1|606261|34|CP029086|CRISPRCasFinder 606261-606294 34 CP029086.1 1295463-1295496 2 0.941
CP029086_2 2.1|606261|34|CP029086|CRISPRCasFinder 606261-606294 34 CP029086.1 2665014-2665047 2 0.941
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 195358-195388 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 503732-503762 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 844469-844499 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 1021274-1021304 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 1400557-1400587 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 1698747-1698777 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 1965776-1965806 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2146442-2146472 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2182752-2182782 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2350230-2350260 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2452878-2452908 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2452991-2453021 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2660599-2660629 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2749032-2749062 2 0.935
CP029086_5 5.1|855270|31|CP029086|CRISPRCasFinder 855270-855300 31 CP029086.1 2749148-2749178 2 0.935
CP029086_7 7.1|2133614|31|CP029086|CRISPRCasFinder 2133614-2133644 31 CP029086.1 215176-215206 2 0.935
CP029086_7 7.1|2133614|31|CP029086|CRISPRCasFinder 2133614-2133644 31 CP029086.1 1622361-1622391 2 0.935

1. spacer 2.1|606261|34|CP029086|CRISPRCasFinder matches to position: 2133589-2133622, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

2. spacer 2.1|606261|34|CP029086|CRISPRCasFinder matches to position: 2447221-2447254, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

3. spacer 1.1|180720|33|CP029086|CRISPRCasFinder matches to position: 2139148-2139180, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

4. spacer 1.1|180720|33|CP029086|CRISPRCasFinder matches to position: 2660641-2660673, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

5. spacer 2.1|606261|34|CP029086|CRISPRCasFinder matches to position: 300717-300750, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

6. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2146330-2146360, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

7. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2146386-2146416, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

8. spacer 7.1|2133614|31|CP029086|CRISPRCasFinder matches to position: 1622416-1622446, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
************************.******

9. spacer 8.1|2182441|34|CP029086|CRISPRCasFinder matches to position: 2660640-2660673, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

10. spacer 2.1|606261|34|CP029086|CRISPRCasFinder matches to position: 1295463-1295496, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

11. spacer 2.1|606261|34|CP029086|CRISPRCasFinder matches to position: 2665014-2665047, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

12. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 195358-195388, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

13. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 503732-503762, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

14. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 844469-844499, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

15. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 1021274-1021304, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

16. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 1400557-1400587, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

17. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 1698747-1698777, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

18. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 1965776-1965806, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

19. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2146442-2146472, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

20. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2182752-2182782, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

21. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2350230-2350260, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

22. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2452878-2452908, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

23. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2452991-2453021, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

24. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2660599-2660629, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

25. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2749032-2749062, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

26. spacer 5.1|855270|31|CP029086|CRISPRCasFinder matches to position: 2749148-2749178, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

27. spacer 7.1|2133614|31|CP029086|CRISPRCasFinder matches to position: 215176-215206, mismatch: 2, identity: 0.935

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** .******

28. spacer 7.1|2133614|31|CP029086|CRISPRCasFinder matches to position: 1622361-1622391, mismatch: 2, identity: 0.935

ctgtgttggggccccgccaacttgtattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
************************.***.**

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029086_4 4.1|747228|34|CP029086|CRISPRCasFinder 747228-747261 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
CP029086_4 4.1|747228|34|CP029086|CRISPRCasFinder 747228-747261 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.1|747228|34|CP029086|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

2. spacer 4.1|747228|34|CP029086|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 353435 : 424171 66 Staphylococcus_phage(91.67%) tRNA,holin,protease,transposase NA
DBSCAN-SWA_2 558142 : 604357 64 Staphylococcus_phage(96.88%) integrase,head,holin,capsid,protease,tail,portal attL 578172:578189|attR 602341:602358
DBSCAN-SWA_3 2070824 : 2078645 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_4 2090616 : 2105201 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_5 2351740 : 2360213 9 Synechococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage