CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP029107	Escherichia coli strain AR437 plasmid unnamed5, complete sequence	0 crisprs	NA	0	3
CP029103	Escherichia coli strain AR437 plasmid unnamed1, complete sequence	0 crisprs	NA	0	1
CP029105	Escherichia coli strain AR437 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
CP029106	Escherichia coli strain AR437 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0
CP029108	Escherichia coli strain AR437 chromosome, complete genome	11 crisprs	RT,DEDDh,cas3,csa3,PD-DExK,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	24	15
CP029104	Escherichia coli strain AR437 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8781 : 48569

Escherichia_phage(29.17%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF09340.1\|8781_8967_-\|transposase	putative transposase	A0A0P0ZBS5	Stx2-converting_phage	2.9e-20	70.7
AWF09301.1\|9074_9296_-	hypothetical protein	NA	NA	NA	NA
AWF09300.1\|9326_9677_-\|transposase	putative transposase	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
AWF09322.1\|9673_10030_-\|transposase	transposase family protein	Q6H9S5	Enterobacteria_phage	5.7e-33	89.5
AWF09257.1\|10144_10648_-\|transposase	putative transposase	U5P0U6	Shigella_phage	1.7e-94	99.4
AWF09296.1\|10883_11453_+	hypothetical protein	NA	NA	NA	NA
AWF09269.1\|11865_12219_-	putative membrane protein	NA	NA	NA	NA
AWF09329.1\|12690_13713_-\|transposase	transposase family protein	NA	NA	NA	NA
AWF09328.1\|14117_14375_+	replication regulatory RepB family protein	NA	NA	NA	NA
AWF09315.1\|14676_15534_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AWF09293.1\|16234_16375_+	hypothetical protein	NA	NA	NA	NA
AWF09360.1\|16353_16476_+	hypothetical protein	NA	NA	NA	NA
AWF09314.1\|16472_17126_+\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWF09312.1\|17218_17476_+	antitoxin PemI	NA	NA	NA	NA
AWF09252.1\|17477_17810_+	mRNA interferase PemK	NA	NA	NA	NA
AWF09356.1\|17946_20844_-	hypothetical protein	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
AWF09323.1\|20938_21544_+	resolvase, N terminal domain protein	A0A1S5Y2X8	uncultured_archaeal_virus	9.4e-20	35.3
AWF09358.1\|21540_22302_-\|transposase	tn3 transposase DDE domain protein	A0A1B0V7H9	Salmonella_phage	1.9e-134	98.4
AWF09353.1\|22305_22713_+	isochorismatase family protein	NA	NA	NA	NA
AWF09316.1\|22850_23735_+	multidrug resistance efflux transporter family protein	NA	NA	NA	NA
AWF09361.1\|23766_24966_-	tetracycline resistance protein, class C	NA	NA	NA	NA
AWF09319.1\|25071_25722_+	tetracycline repressor protein class B from transposon Tn10	NA	NA	NA	NA
AWF09268.1\|26037_27627_-\|transposase	tn3 transposase DDE domain protein	A0A1B0V7H9	Salmonella_phage	1.4e-293	100.0
AWF09308.1\|27617_28322_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWF09307.1\|29150_29981_+	beta-lactamase OXA-1	NA	NA	NA	NA
AWF09291.1\|30612_31317_-\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWF09332.1\|31363_32845_-\|transposase	tn3 transposase DDE domain protein	Q1MVP5	Enterobacteria_phage	1.5e-284	99.8
AWF09350.1\|33698_33971_+	cupin fold metallo, WbuC family protein	NA	NA	NA	NA
AWF09289.1\|34017_34893_-	beta-lactamase CTX-M-1	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AWF09286.1\|35045_35168_-	hypothetical protein	NA	NA	NA	NA
AWF09284.1\|35148_35511_-\|transposase	transposase DDE domain group 1 family protein	A0A1B0VDR3	Salmonella_phage	3.8e-40	100.0
AWF09349.1\|35501_36206_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWF09305.1\|36277_36943_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	2.4e-69	64.5
AWF09264.1\|37435_37912_-	erythromycin resistance repressor protein	NA	NA	NA	NA
AWF09274.1\|38019_39258_-	major Facilitator Superfamily protein	NA	NA	NA	NA
AWF09285.1\|39254_39722_-	phosphotransferase enzyme family protein	NA	NA	NA	NA
AWF09273.1\|39755_40181_+	putative macrolide phosphotransferase K	NA	NA	NA	NA
AWF09299.1\|40281_40986_-\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWF09327.1\|41091_41385_+\|transposase	putative transposase	A0A0P0ZDM8	Stx2-converting_phage	2.9e-51	100.0
AWF09333.1\|41433_41691_+\|transposase	transposase C of IS166 homeodomain protein	A0A0P0ZEB3	Stx2-converting_phage	2.3e-31	97.4
AWF09344.1\|41692_42451_+\|transposase	helix-turn-helix domain of transposase IS66 family protein	A0A0P0ZBS5	Stx2-converting_phage	9.1e-129	96.9
AWF09267.1\|42464_43487_+	helix-turn-helix family protein	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
AWF09324.1\|43486_44266_+	istB-like ATP binding family protein	A0A2L1IVB6	Escherichia_phage	4.9e-138	99.2
AWF09362.1\|44510_44942_+\|transposase	putative transposase	A0A0P0ZEB3	Stx2-converting_phage	5.4e-78	100.0
AWF09355.1\|45004_45796_-	hypothetical protein	NA	NA	NA	NA
AWF09275.1\|45802_47773_-	tonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA	NA	NA	NA
AWF09346.1\|48054_48420_+\|transposase	transposase family protein	Q76S41	Shigella_phage	9.6e-60	100.0
AWF09266.1\|48377_48569_+\|transposase	transposase family protein	Q9ZXG3	Shigella_phage	7.1e-14	100.0

DBSCAN-SWA_2

52168 : 58705

Macacine_betaherpesvirus(16.67%)

integrase,transposase

attL 45083:45099|attR 62884:62900

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
45083:45099	attL	NA	NA	NA	NA
AWF09326.1\|52168_52720_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.5e-24	57.6
AWF09357.1\|53004_53982_-	repFIB replication protein A	J9Q7H0	Salmonella_phage	4.6e-101	63.9
AWF09288.1\|54751_55084_+	homeo-like domain protein	U5N3F9	Enterobacteria_phage	2.8e-50	98.0
AWF09262.1\|55479_55731_+	hypothetical protein	F1C5A5	Cronobacter_phage	2.1e-21	60.0
AWF09359.1\|55910_56414_-\|transposase	putative transposase	U5P0U6	Shigella_phage	3.7e-94	99.4
AWF09335.1\|57086_57878_+	periplasmic solute binding family protein	NA	NA	NA	NA
AWF09281.1\|57877_58705_+	ABC transporter family protein	A0A1M7XV31	Cedratvirus	3.6e-14	27.0
62884:62900	attR	NA	NA	NA	NA

DBSCAN-SWA_3

84590 : 93430

Stx2-converting_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF09339.1\|84590_85274_+	DNA methylase family protein	A0A2I7RE86	Vibrio_phage	1.1e-29	36.0
AWF09276.1\|85274_85496_+	hypothetical protein	NA	NA	NA	NA
AWF09297.1\|85509_85944_+	hypothetical protein	NA	NA	NA	NA
AWF09351.1\|85988_86759_+	putative yfdA	NA	NA	NA	NA
AWF09310.1\|87172_87598_+	antirestriction family protein	NA	NA	NA	NA
AWF09278.1\|87644_88067_+	hypothetical protein	NA	NA	NA	NA
AWF09320.1\|88063_88234_+	putative yffA	NA	NA	NA	NA
AWF09283.1\|88265_88949_+	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	2.9e-09	30.5
AWF09309.1\|89003_89564_+	fertility inhibition protein	NA	NA	NA	NA
AWF09255.1\|89827_89953_+	hypothetical protein	NA	NA	NA	NA
AWF09279.1\|90094_90217_+	hypothetical protein	NA	NA	NA	NA
AWF09334.1\|90210_90378_-\|transposase	putative transposase	U5P0U6	Shigella_phage	7.8e-09	100.0
AWF09354.1\|90726_91032_+\|transposase	transposase family protein	A0A0P0ZCV4	Stx2-converting_phage	3.9e-14	44.6
AWF09292.1\|91031_91379_+\|transposase	putative transposase	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
AWF09363.1\|91398_92970_+\|transposase	transposase IS66 family protein	A0A0P0ZEB3	Stx2-converting_phage	4.9e-169	58.5
AWF09331.1\|92890_93430_-\|transposase	putative transposase	U5P0U6	Shigella_phage	1.4e-78	99.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029108

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CRISPR-Cas detection and classification

Crispr_ID: CP029108_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_1

28694-28838

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_1

>merge|CP029108|1|28694-28838|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP029108|1|1|28694-28838|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF11697.1\|28861_31123_-\|aconitase-family-protein	unknown	unknown	gnl\|CDD\|183125
CP029108.1\|AWF11407.1\|24891_25041_-\|putative-transmembrane-protein	unknown	unknown	unknown
CP029108.1\|AWF13677.1\|21679_21886_+\|putative-phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
CP029108.1\|AWF11885.1\|25721_25850_-\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF11835.1\|38074_38764_-\|molybdate-ABC-transporter,-permease-protein	unknown	unknown	gnl\|CDD\|181841
CP029108.1\|AWF10003.1\|37013_38072_-\|molybdate-ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182993
CP029108.1\|AWF11999.1\|23919_24069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369224
CP029108.1\|AWF12281.1\|21961_22258_+\|host-nuclease-inhibitor-protein-gam	unknown	unknown	gnl\|CDD\|368728
CP029108.1\|AWF13056.1\|23045_23726_+\|exonuclease	unknown	unknown	gnl\|CDD\|378216
CP029108.1\|AWF10247.1\|36194_37013_+\|pyridoxal-phosphate-phosphatase-YbhA	unknown	unknown	gnl\|CDD\|182523
CP029108.1\|AWF11275.1\|26139_27210_+\|integrase	unknown	unknown	gnl\|CDD\|271181
CP029108.1\|AWF13040.1\|22263_23049_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
CP029108.1\|AWF10647.1\|32814_33867_-\|proline-racemase-family-protein	unknown	unknown	gnl\|CDD\|380230
CP029108.1\|AWF11856.1\|31305_32739_-\|inner-membrane-protein-YbhI	unknown	unknown	gnl\|CDD\|279307
CP029108.1\|AWF12348.1\|34071_35004_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|176131
CP029108.1\|AWF10654.1\|38763_39537_-\|molybdate-ABC-transporter,-periplasmic-molybdate-binding-protein	unknown	unknown	gnl\|CDD\|182641
CP029108.1\|AWF09929.1\|24145_24361_+\|putative-ybl17	unknown	unknown	unknown
CP029108.1\|AWF12243.1\|27344_28628_+\|putative-acyl-CoA-thioester-hydrolase-YbhC	unknown	unknown	gnl\|CDD\|236709
CP029108.1\|AWF09616.1\|35044_36040_-\|arylesterase-family-protein	unknown	unknown	gnl\|CDD\|182912
CP029108.1\|AWF12455.1\|33952_34069_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF11697.1\|28861_31123_-\|aconitase-family-protein	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
CP029108.1\|AWF13677.1\|21679_21886_+\|putative-phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	6.0586e-14
CP029108.1\|AWF10654.1\|38763_39537_-\|molybdate-ABC-transporter,-periplasmic-molybdate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
CP029108.1\|AWF11835.1\|38074_38764_-\|molybdate-ABC-transporter,-permease-protein	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
CP029108.1\|AWF10003.1\|37013_38072_-\|molybdate-ABC-transporter,-ATP-binding-protein	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
CP029108.1\|AWF11999.1\|23919_24069_+\|hypothetical-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	5.43117e-16
CP029108.1\|AWF12281.1\|21961_22258_+\|host-nuclease-inhibitor-protein-gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	8.40476e-53
CP029108.1\|AWF13056.1\|23045_23726_+\|exonuclease	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	2.98824e-27
CP029108.1\|AWF10247.1\|36194_37013_+\|pyridoxal-phosphate-phosphatase-YbhA	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
CP029108.1\|AWF11275.1\|26139_27210_+\|integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	8.02573e-62
CP029108.1\|AWF13040.1\|22263_23049_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
CP029108.1\|AWF10647.1\|32814_33867_-\|proline-racemase-family-protein	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
CP029108.1\|AWF11856.1\|31305_32739_-\|inner-membrane-protein-YbhI	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
CP029108.1\|AWF12348.1\|34071_35004_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.27099e-82
CP029108.1\|AWF12243.1\|27344_28628_+\|putative-acyl-CoA-thioester-hydrolase-YbhC	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
CP029108.1\|AWF09616.1\|35044_36040_-\|arylesterase-family-protein	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0

>CP029108.1|AWF12243.1|27344_28628_+|putative-acyl-CoA-thioester-hydrolase-YbhC
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>CP029108.1|AWF11275.1|26139_27210_+|integrase
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTVLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
>CP029108.1|AWF11885.1|25721_25850_-|hypothetical-protein
MCYLRPQHPVVIAVADVLGFDNSVEWFSIPFTCDSEVHLSSP
>CP029108.1|AWF11407.1|24891_25041_-|putative-transmembrane-protein
MDDPDLHENIRICYPYGNYEYDNIIYVEKKINILGAVVTYAQTARDDTE
>CP029108.1|AWF09929.1|24145_24361_+|putative-ybl17
MTPQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER
>CP029108.1|AWF11999.1|23919_24069_+|hypothetical-protein
MAHSLAQIGVRFVPIPVETDEEFHTLAAFLSQKLEMMVAKAEADERDQV
>CP029108.1|AWF13056.1|23045_23726_+|exonuclease
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSSVNITESPIIYRDENMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVVERDEKYMASFDEMVPEFIEKMDEALAEIGFVFGEQWR
>CP029108.1|AWF13040.1|22263_23049_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>CP029108.1|AWF12281.1|21961_22258_+|host-nuclease-inhibitor-protein-gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRHGASKKAITRAFDDDVEFQERMAEHIRYMVETIAHHQVDIDSEV
>CP029108.1|AWF13677.1|21679_21886_+|putative-phage-encoded-cell-division-inhibitor-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH
>CP029108.1|AWF11697.1|28861_31123_-|aconitase-family-protein
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAQKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYKIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAQKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMGSLTAEEREIIKAGSLINFNKNRQM
>CP029108.1|AWF11856.1|31305_32739_-|inner-membrane-protein-YbhI
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>CP029108.1|AWF10647.1|32814_33867_-|proline-racemase-family-protein
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDLRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>CP029108.1|AWF12455.1|33952_34069_-|hypothetical-protein
MIIHASLLLRKMEATILGGWSLKILTAFSQLKLMKKCY
>CP029108.1|AWF12348.1|34071_35004_+|lysR-substrate-binding-domain-protein
MKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>CP029108.1|AWF09616.1|35044_36040_-|arylesterase-family-protein
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYSIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>CP029108.1|AWF10247.1|36194_37013_+|pyridoxal-phosphate-phosphatase-YbhA
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>CP029108.1|AWF10003.1|37013_38072_-|molybdate-ABC-transporter,-ATP-binding-protein
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>CP029108.1|AWF11835.1|38074_38764_-|molybdate-ABC-transporter,-permease-protein
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>CP029108.1|AWF10654.1|38763_39537_-|molybdate-ABC-transporter,-periplasmic-molybdate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVAIFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK

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Crispr_ID: CP029108_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_2

550299-550452

Orphan

Consensus_repeat	Method
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_2

>merge|CP029108|2|550299-550452|CRISPRCasFinder
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCTGCGCATAACCGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACCGATCCGGCACAGGTTTGTAGGCATGATAAGACGCG

>CP029108|2|2|550299-550452|CRISPRCasFinder
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	TCAGCGTCGCATCAGGCATCTGCGCATAACCGCCGGATGCGGCGTAAA
CGCCTTATCCGGCCTACCGATCCGGCACAGGTTTGTAGGCATGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF13566.1\|551818_551959_+\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF13923.1\|552204_552945_+\|L,D-transpeptidase-catalytic-domain-protein	unknown	unknown	gnl\|CDD\|225577
CP029108.1\|AWF12082.1\|553888_554467_-\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|179012
CP029108.1\|AWF10405.1\|545380_545578_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181271
CP029108.1\|AWF10538.1\|554706_557151_+\|acyl-CoA-dehydrogenase,-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|236528
CP029108.1\|AWF11267.1\|545546_545801_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181972
CP029108.1\|AWF12251.1\|543732_545190_+\|cytosol-non-specific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP029108.1\|AWF13384.1\|551154_551781_-\|putative-endopeptidase-YafL	unknown	unknown	gnl\|CDD\|223862
CP029108.1\|AWF12377.1\|545246_545387_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181271
CP029108.1\|AWF09508.1\|541677_542922_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235337
CP029108.1\|AWF13229.1\|546119_546494_-\|acetyltransferase-family-protein	unknown	unknown	gnl\|CDD\|182099
CP029108.1\|AWF13031.1\|557193_557640_-\|inhibitor-of-vertebrate-lysozyme	unknown	unknown	gnl\|CDD\|182187
CP029108.1\|AWF13051.1\|543013_543472_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP029108.1\|AWF10146.1\|552915_553683_-\|glutamine-amidotransferases-class-II-family-protein	unknown	unknown	gnl\|CDD\|372525
CP029108.1\|AWF11916.1\|546568_547624_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP029108.1\|AWF10986.1\|547694_548465_-\|ompA-family-protein	unknown	unknown	gnl\|CDD\|235860
CP029108.1\|AWF11462.1\|557820_558591_+\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|182461
CP029108.1\|AWF12236.1\|550481_550979_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
CP029108.1\|AWF10796.1\|548424_550164_+\|FHIPEP-family-protein	unknown	unknown	gnl\|CDD\|224217
CP029108.1\|AWF11147.1\|558632_559676_-\|DDE_Tnp_1-associated-family-protein	unknown	unknown	gnl\|CDD\|227720

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF13923.1\|552204_552945_+\|L,D-transpeptidase-catalytic-domain-protein	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
CP029108.1\|AWF12082.1\|553888_554467_-\|phosphoheptose-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
CP029108.1\|AWF10405.1\|545380_545578_-\|hypothetical-protein	gnl\|CDD\|181271	PRK08179, prfH, peptide chain release factor-like protein; Reviewed.	1.65051e-35
CP029108.1\|AWF10538.1\|554706_557151_+\|acyl-CoA-dehydrogenase,-C-terminal-domain-protein	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
CP029108.1\|AWF11267.1\|545546_545801_-\|hypothetical-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	4.40806e-42
CP029108.1\|AWF12251.1\|543732_545190_+\|cytosol-non-specific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP029108.1\|AWF13384.1\|551154_551781_-\|putative-endopeptidase-YafL	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	3.74245e-42
CP029108.1\|AWF12377.1\|545246_545387_-\|hypothetical-protein	gnl\|CDD\|181271	PRK08179, prfH, peptide chain release factor-like protein; Reviewed.	6.09679e-17
CP029108.1\|AWF09508.1\|541677_542922_-\|hypothetical-protein	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP029108.1\|AWF13229.1\|546119_546494_-\|acetyltransferase-family-protein	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.2122e-85
CP029108.1\|AWF13031.1\|557193_557640_-\|inhibitor-of-vertebrate-lysozyme	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	1.74493e-90
CP029108.1\|AWF13051.1\|543013_543472_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	5.05624e-113
CP029108.1\|AWF10146.1\|552915_553683_-\|glutamine-amidotransferases-class-II-family-protein	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.29603e-146
CP029108.1\|AWF11916.1\|546568_547624_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP029108.1\|AWF10986.1\|547694_548465_-\|ompA-family-protein	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	8.79616e-171
CP029108.1\|AWF11462.1\|557820_558591_+\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
CP029108.1\|AWF12236.1\|550481_550979_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.32036e-43
CP029108.1\|AWF10796.1\|548424_550164_+\|FHIPEP-family-protein	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP029108.1\|AWF11147.1\|558632_559676_-\|DDE_Tnp_1-associated-family-protein	gnl\|CDD\|227720	COG5433, COG5433, Transposase [DNA replication, recombination, and repair].	1.18125e-32

>CP029108.1|AWF10796.1|548424_550164_+|FHIPEP-family-protein
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRISDNGDITHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFSYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>CP029108.1|AWF10986.1|547694_548465_-|ompA-family-protein
MIVNSVSKSERESIIAALHGQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFECGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRMR
>CP029108.1|AWF11916.1|546568_547624_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>CP029108.1|AWF13229.1|546119_546494_-|acetyltransferase-family-protein
MTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQIVKQQHVECRGAWFTNFYMRYKPQH
>CP029108.1|AWF11267.1|545546_545801_-|hypothetical-protein
MGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPARRRGNGAGNRNGPLL
>CP029108.1|AWF10405.1|545380_545578_-|hypothetical-protein
MLETETGRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRSHHGRKNWFLGMLTNGWRDC
>CP029108.1|AWF12377.1|545246_545387_-|hypothetical-protein
MLIAWKLEQQQQENSAALKSQRRMFHHQIERGNPRRTFTGMAFIEG
>CP029108.1|AWF12251.1|543732_545190_+|cytosol-non-specific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQDILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIKSVGHYWTLLTELLKEIPAK
>CP029108.1|AWF13051.1|543013_543472_-|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDNYVVDIPQDTWIEQPWDMGVVFVPPISGR
>CP029108.1|AWF09508.1|541677_542922_-|hypothetical-protein
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDDALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITGWIEKRLC
>CP029108.1|AWF12236.1|550481_550979_-|hypothetical-protein
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAGERIIL
>CP029108.1|AWF13384.1|551154_551781_-|putative-endopeptidase-YafL
MQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGENIRVSRLAEPFWQDHFLGARRILTEETIL
>CP029108.1|AWF13566.1|551818_551959_+|hypothetical-protein
MVALANKGSKTHNENTPGCRNLPSKNEDMKDINRLNEGENFKRPEE
>CP029108.1|AWF13923.1|552204_552945_+|L,D-transpeptidase-catalytic-domain-protein
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>CP029108.1|AWF10146.1|552915_553683_-|glutamine-amidotransferases-class-II-family-protein
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>CP029108.1|AWF12082.1|553888_554467_-|phosphoheptose-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>CP029108.1|AWF10538.1|554706_557151_+|acyl-CoA-dehydrogenase,-C-terminal-domain-protein
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLCSINVDDFDPEELATKPVKLPEKVRKVEAA
>CP029108.1|AWF13031.1|557193_557640_-|inhibitor-of-vertebrate-lysozyme
MFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>CP029108.1|AWF11462.1|557820_558591_+|carbon-nitrogen-hydrolase-family-protein
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQNDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMVALREYREKFPAWQDADEFRLR
>CP029108.1|AWF11147.1|558632_559676_-|DDE_Tnp_1-associated-family-protein
MTIFAVISGAESWEDIEDFGETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSDDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIRTDEKSNEITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPEHDSYAMSEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKEPEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLAESGLS

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Crispr_ID: CP029108_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_3

740363-740478

Orphan

Consensus_repeat	Method
AACGCCTGATGCGACGCTGACGCGTCTTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_3

>merge|CP029108|3|740363-740478|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACGCGCTGTGTTTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATC

>CP029108|3|3|740363-740478|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATC	TGGCCTACGCGCTGTGTTTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTC
AACGCCTGATGCGACGCTGGCGCGTCTTATC

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF11638.1\|747522_748338_-\|dnaJ-like-protein-DjlA	unknown	unknown	gnl\|CDD\|236512
CP029108.1\|AWF10400.1\|750999_752286_+\|chaperone-SurA	unknown	unknown	gnl\|CDD\|236758
CP029108.1\|AWF11799.1\|735062_735827_-\|inner-membrane-protein-YabI	unknown	unknown	gnl\|CDD\|223659
CP029108.1\|AWF13559.1\|740542_741238_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP029108.1\|AWF11619.1\|738840_740343_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP029108.1\|AWF12742.1\|731697_732681_+\|thiamine/thiaminee-pyrophosphate-ABC-transporter,-thiamine/thiaminee-pyrophospate-binding-protein	unknown	unknown	gnl\|CDD\|236883
CP029108.1\|AWF10036.1\|741312_743664_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP029108.1\|AWF11773.1\|735912_736791_-\|arabinose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|236717
CP029108.1\|AWF11114.1\|753271_754093_+\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|234708
CP029108.1\|AWF13594.1\|754113_754473_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180098
CP029108.1\|AWF11127.1\|729878_731534_+\|bacterial-extracellular-solute-binding,-5-Middle-family-protein	unknown	unknown	gnl\|CDD\|184188
CP029108.1\|AWF11453.1\|752285_753275_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP029108.1\|AWF13145.1\|737129_738830_+\|L-ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP029108.1\|AWF13119.1\|743828_746735_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP029108.1\|AWF12312.1\|734250_734949_+\|thiamine-ABC-transporter,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182716
CP029108.1\|AWF10638.1\|746746_747406_+\|pseudouridine-synthase,-RluA-family-protein	unknown	unknown	gnl\|CDD\|236659
CP029108.1\|AWF12912.1\|732656_734267_+\|thiamine/thiamine-pyrophosphate-ABC-transporter,-permease-protein	unknown	unknown	gnl\|CDD\|181853
CP029108.1\|AWF13318.1\|728378_729557_-\|sugar-efflux-transporter-A	unknown	unknown	gnl\|CDD\|129977
CP029108.1\|AWF13727.1\|729658_729790_-\|putative-inhibitor-of-glucose-uptake-transporter-SgrT	unknown	unknown	gnl\|CDD\|374203
CP029108.1\|AWF11678.1\|748592_750947_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF11638.1\|747522_748338_-\|dnaJ-like-protein-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.49529e-169
CP029108.1\|AWF10400.1\|750999_752286_+\|chaperone-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP029108.1\|AWF11799.1\|735062_735827_-\|inner-membrane-protein-YabI	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.3759e-49
CP029108.1\|AWF13559.1\|740542_741238_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
CP029108.1\|AWF11619.1\|738840_740343_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP029108.1\|AWF12742.1\|731697_732681_+\|thiamine/thiaminee-pyrophosphate-ABC-transporter,-thiamine/thiaminee-pyrophospate-binding-protein	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
CP029108.1\|AWF10036.1\|741312_743664_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP029108.1\|AWF11773.1\|735912_736791_-\|arabinose-operon-regulatory-protein	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP029108.1\|AWF11114.1\|753271_754093_+\|dimethyladenosine-transferase	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
CP029108.1\|AWF13594.1\|754113_754473_+\|hypothetical-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	2.82668e-74
CP029108.1\|AWF11127.1\|729878_731534_+\|bacterial-extracellular-solute-binding,-5-Middle-family-protein	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
CP029108.1\|AWF11453.1\|752285_753275_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP029108.1\|AWF13145.1\|737129_738830_+\|L-ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP029108.1\|AWF13119.1\|743828_746735_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP029108.1\|AWF12312.1\|734250_734949_+\|thiamine-ABC-transporter,-ATP-binding-protein	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.49788e-164
CP029108.1\|AWF10638.1\|746746_747406_+\|pseudouridine-synthase,-RluA-family-protein	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
CP029108.1\|AWF12912.1\|732656_734267_+\|thiamine/thiamine-pyrophosphate-ABC-transporter,-permease-protein	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
CP029108.1\|AWF13318.1\|728378_729557_-\|sugar-efflux-transporter-A	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP029108.1\|AWF13727.1\|729658_729790_-\|putative-inhibitor-of-glucose-uptake-transporter-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
CP029108.1\|AWF11678.1\|748592_750947_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0

>CP029108.1|AWF11619.1|738840_740343_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>CP029108.1|AWF13145.1|737129_738830_+|L-ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDTTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTGPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>CP029108.1|AWF11773.1|735912_736791_-|arabinose-operon-regulatory-protein
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>CP029108.1|AWF11799.1|735062_735827_-|inner-membrane-protein-YabI
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGG
>CP029108.1|AWF12312.1|734250_734949_+|thiamine-ABC-transporter,-ATP-binding-protein
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTNELLSGKASASALLGITG
>CP029108.1|AWF12912.1|732656_734267_+|thiamine/thiamine-pyrophosphate-ABC-transporter,-permease-protein
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>CP029108.1|AWF12742.1|731697_732681_+|thiamine/thiaminee-pyrophosphate-ABC-transporter,-thiamine/thiaminee-pyrophospate-binding-protein
MLKKCLPLLLLCTAPVFAKPVLIVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>CP029108.1|AWF11127.1|729878_731534_+|bacterial-extracellular-solute-binding,-5-Middle-family-protein
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>CP029108.1|AWF13727.1|729658_729790_-|putative-inhibitor-of-glucose-uptake-transporter-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>CP029108.1|AWF13318.1|728378_729557_-|sugar-efflux-transporter-A
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV
>CP029108.1|AWF13559.1|740542_741238_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>CP029108.1|AWF10036.1|741312_743664_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYIRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>CP029108.1|AWF13119.1|743828_746735_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>CP029108.1|AWF10638.1|746746_747406_+|pseudouridine-synthase,-RluA-family-protein
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>CP029108.1|AWF11638.1|747522_748338_-|dnaJ-like-protein-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>CP029108.1|AWF11678.1|748592_750947_+|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNSL
>CP029108.1|AWF10400.1|750999_752286_+|chaperone-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>CP029108.1|AWF11453.1|752285_753275_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPLLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>CP029108.1|AWF11114.1|753271_754093_+|dimethyladenosine-transferase
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>CP029108.1|AWF13594.1|754113_754473_+|hypothetical-protein
MCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH

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Crispr_ID: CP029108_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_4

763391-763523

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of CP029108_4

>merge|CP029108|4|763391-763523|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>CP029108|4|1|763391-763523|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF10495.1\|759952_760240_-\|putative-ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
CP029108.1\|AWF13135.1\|756070_757933_-\|proton-antiporter-2-family-protein	unknown	unknown	gnl\|CDD\|235131
CP029108.1\|AWF13594.1\|754113_754473_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180098
CP029108.1\|AWF10322.1\|754479_755322_+\|bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|273208
CP029108.1\|AWF10309.1\|762529_763300_-\|electron-transfer-flavodomain-protein	unknown	unknown	gnl\|CDD\|179569
CP029108.1\|AWF12127.1\|771439_771658_+\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF13749.1\|774904_776053_-\|carbamoyl-phosphate-synthase-small-chain	unknown	unknown	gnl\|CDD\|237139
CP029108.1\|AWF12506.1\|766589_767807_+\|carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
CP029108.1\|AWF10987.1\|771009_771405_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183154
CP029108.1\|AWF10782.1\|755399_755879_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP029108.1\|AWF10603.1\|761573_762515_-\|electron-transfer-flavodomain-protein	unknown	unknown	gnl\|CDD\|235120
CP029108.1\|AWF13248.1\|769542_770328_+\|carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|179599
CP029108.1\|AWF11626.1\|765318_766461_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
CP029108.1\|AWF11138.1\|757925_758456_-\|NADPH-dependent-FMN-reductase-family-protein	unknown	unknown	gnl\|CDD\|234852
CP029108.1\|AWF11108.1\|763773_765288_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
CP029108.1\|AWF10815.1\|771665_774887_-\|carbamoyl-phosphate-synthase-large-chain	unknown	unknown	gnl\|CDD\|235393
CP029108.1\|AWF12885.1\|767880_769434_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181195
CP029108.1\|AWF10496.1\|770333_770924_+\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|184189
CP029108.1\|AWF10209.1\|758563_759895_-\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|340874
CP029108.1\|AWF10006.1\|760236_761523_-\|GDP-dissociation-inhibitor-family-protein	unknown	unknown	gnl\|CDD\|182273

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF10495.1\|759952_760240_-\|putative-ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	2.23442e-69
CP029108.1\|AWF13135.1\|756070_757933_-\|proton-antiporter-2-family-protein	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
CP029108.1\|AWF13594.1\|754113_754473_+\|hypothetical-protein	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	2.82668e-74
CP029108.1\|AWF10322.1\|754479_755322_+\|bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP029108.1\|AWF10309.1\|762529_763300_-\|electron-transfer-flavodomain-protein	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
CP029108.1\|AWF13749.1\|774904_776053_-\|carbamoyl-phosphate-synthase-small-chain	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP029108.1\|AWF12506.1\|766589_767807_+\|carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
CP029108.1\|AWF10987.1\|771009_771405_-\|hypothetical-protein	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.96175e-74
CP029108.1\|AWF10782.1\|755399_755879_-\|dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
CP029108.1\|AWF10603.1\|761573_762515_-\|electron-transfer-flavodomain-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
CP029108.1\|AWF13248.1\|769542_770328_+\|carnitinyl-CoA-dehydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	1.76707e-178
CP029108.1\|AWF11626.1\|765318_766461_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
CP029108.1\|AWF11138.1\|757925_758456_-\|NADPH-dependent-FMN-reductase-family-protein	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
CP029108.1\|AWF11108.1\|763773_765288_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
CP029108.1\|AWF10815.1\|771665_774887_-\|carbamoyl-phosphate-synthase-large-chain	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP029108.1\|AWF12885.1\|767880_769434_+\|hypothetical-protein	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
CP029108.1\|AWF10496.1\|770333_770924_+\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.12106e-142
CP029108.1\|AWF10209.1\|758563_759895_-\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
CP029108.1\|AWF10006.1\|760236_761523_-\|GDP-dissociation-inhibitor-family-protein	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0

>CP029108.1|AWF10309.1|762529_763300_-|electron-transfer-flavodomain-protein
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>CP029108.1|AWF10603.1|761573_762515_-|electron-transfer-flavodomain-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>CP029108.1|AWF10006.1|760236_761523_-|GDP-dissociation-inhibitor-family-protein
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>CP029108.1|AWF10495.1|759952_760240_-|putative-ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQVLELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>CP029108.1|AWF10209.1|758563_759895_-|sugar-(and-other)-transporter-family-protein
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>CP029108.1|AWF11138.1|757925_758456_-|NADPH-dependent-FMN-reductase-family-protein
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>CP029108.1|AWF13135.1|756070_757933_-|proton-antiporter-2-family-protein
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>CP029108.1|AWF10782.1|755399_755879_-|dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>CP029108.1|AWF10322.1|754479_755322_+|bis(5'-nucleosyl)-tetraphosphatase
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>CP029108.1|AWF13594.1|754113_754473_+|hypothetical-protein
MCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>CP029108.1|AWF11108.1|763773_765288_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>CP029108.1|AWF11626.1|765318_766461_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>CP029108.1|AWF12506.1|766589_767807_+|carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLSTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>CP029108.1|AWF12885.1|767880_769434_+|hypothetical-protein
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLLTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>CP029108.1|AWF13248.1|769542_770328_+|carnitinyl-CoA-dehydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGTEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAVEGPLAFAEKRDPVWKGR
>CP029108.1|AWF10496.1|770333_770924_+|bacterial-transferase-hexapeptide-family-protein
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>CP029108.1|AWF10987.1|771009_771405_-|hypothetical-protein
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>CP029108.1|AWF12127.1|771439_771658_+|hypothetical-protein
MTRFEAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKRSSSENRITYSIKLADEKYPP
>CP029108.1|AWF10815.1|771665_774887_-|carbamoyl-phosphate-synthase-large-chain
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>CP029108.1|AWF13749.1|774904_776053_-|carbamoyl-phosphate-synthase-small-chain
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK

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Crispr_ID: CP029108_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_5

2216933-2217072

Orphan

Consensus_repeat	Method
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_5

>merge|CP029108|5|2216933-2217072|CRISPRCasFinder
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAACAGCAGTCGGATGCGGCGTAAACACCTTATCTGACCTACGTTTTGTGTCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA

>CP029108|5|4|2216933-2217072|CRISPRCasFinder
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	ACAGCAGTCGGATGCGGCGTAAACACCTTATCTGACCTACGT
TTTGTGTCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF13678.1\|2215132_2215768_+\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|187560
CP029108.1\|AWF09957.1\|2218633_2220670_-\|lppC-lipofamily-protein	unknown	unknown	gnl\|CDD\|225649
CP029108.1\|AWF11343.1\|2226062_2226662_-\|gram-negative-pili-assembly-chaperone,-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|225663
CP029108.1\|AWF11881.1\|2211498_2212494_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223896
CP029108.1\|AWF10956.1\|2226837_2227422_-\|fimbrial-family-protein	unknown	unknown	gnl\|CDD\|226069
CP029108.1\|AWF12732.1\|2213220_2213724_+\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|225695
CP029108.1\|AWF12278.1\|2225402_2225906_+\|putative-transposase	unknown	unknown	gnl\|CDD\|281403
CP029108.1\|AWF11287.1\|2217085_2217661_-\|BON-domain-protein	unknown	unknown	gnl\|CDD\|182907
CP029108.1\|AWF11553.1\|2215840_2216881_+\|putative-permease-family-protein	unknown	unknown	gnl\|CDD\|223773
CP029108.1\|AWF13703.1\|2213710_2214013_-\|GIY-YIG-catalytic-domain-protein	unknown	unknown	gnl\|CDD\|178979
CP029108.1\|AWF10944.1\|2221637_2222729_-\|fimbrial-family-protein	unknown	unknown	gnl\|CDD\|366088
CP029108.1\|AWF09395.1\|2222739_2224905_-\|papC-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|225729
CP029108.1\|AWF12246.1\|2214063_2214507_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
CP029108.1\|AWF13492.1\|2210611_2211490_-\|peptidase-U32-family-protein	unknown	unknown	gnl\|CDD\|237968
CP029108.1\|AWF12105.1\|2217670_2218261_-\|SIS-domain-protein	unknown	unknown	gnl\|CDD\|182811
CP029108.1\|AWF13534.1\|2218280_2218676_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129354
CP029108.1\|AWF13669.1\|2220734_2221595_+\|ribosomal-RNA-small-subunit-methyltransferase-I	unknown	unknown	gnl\|CDD\|184956
CP029108.1\|AWF11532.1\|2212702_2213227_+\|SCP-2-sterol-transfer-family-protein	unknown	unknown	gnl\|CDD\|225696
CP029108.1\|AWF10135.1\|2214486_2215005_-\|intracellular-protease,-PfpI-family-protein	unknown	unknown	gnl\|CDD\|153228
CP029108.1\|AWF11959.1\|2209398_2210406_-\|luciferase-oxidoreductase,-group-1-family-protein	unknown	unknown	gnl\|CDD\|182505

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF13678.1\|2215132_2215768_+\|NADH(P)-binding-family-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89133e-65
CP029108.1\|AWF09957.1\|2218633_2220670_-\|lppC-lipofamily-protein	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	6.33924e-141
CP029108.1\|AWF11343.1\|2226062_2226662_-\|gram-negative-pili-assembly-chaperone,-C-terminal-domain-protein	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	3.53823e-68
CP029108.1\|AWF11881.1\|2211498_2212494_-\|hypothetical-protein	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87234e-118
CP029108.1\|AWF10956.1\|2226837_2227422_-\|fimbrial-family-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.76746e-31
CP029108.1\|AWF12732.1\|2213220_2213724_+\|acetyltransferase-domain-protein	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.31299e-64
CP029108.1\|AWF12278.1\|2225402_2225906_+\|putative-transposase	gnl\|CDD\|281403	pfam03400, DDE_Tnp_IS1, IS1 transposase. Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.	5.28026e-81
CP029108.1\|AWF11287.1\|2217085_2217661_-\|BON-domain-protein	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.97056e-117
CP029108.1\|AWF11553.1\|2215840_2216881_+\|putative-permease-family-protein	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	4.11883e-63
CP029108.1\|AWF13703.1\|2213710_2214013_-\|GIY-YIG-catalytic-domain-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	3.58629e-45
CP029108.1\|AWF10944.1\|2221637_2222729_-\|fimbrial-family-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.34626e-21
CP029108.1\|AWF09395.1\|2222739_2224905_-\|papC-N-terminal-domain-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP029108.1\|AWF12246.1\|2214063_2214507_+\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.19601e-100
CP029108.1\|AWF13492.1\|2210611_2211490_-\|peptidase-U32-family-protein	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
CP029108.1\|AWF12105.1\|2217670_2218261_-\|SIS-domain-protein	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	5.61903e-143
CP029108.1\|AWF13534.1\|2218280_2218676_-\|hypothetical-protein	gnl\|CDD\|129354	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved].	3.92681e-63
CP029108.1\|AWF13669.1\|2220734_2221595_+\|ribosomal-RNA-small-subunit-methyltransferase-I	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
CP029108.1\|AWF11532.1\|2212702_2213227_+\|SCP-2-sterol-transfer-family-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	8.79126e-85
CP029108.1\|AWF10135.1\|2214486_2215005_-\|intracellular-protease,-PfpI-family-protein	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.06977e-86
CP029108.1\|AWF11959.1\|2209398_2210406_-\|luciferase-oxidoreductase,-group-1-family-protein	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0

>CP029108.1|AWF11553.1|2215840_2216881_+|putative-permease-family-protein
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLSWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGTVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>CP029108.1|AWF13678.1|2215132_2215768_+|NADH(P)-binding-family-protein
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
>CP029108.1|AWF10135.1|2214486_2215005_-|intracellular-protease,-PfpI-family-protein
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>CP029108.1|AWF12246.1|2214063_2214507_+|hypothetical-protein
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA
>CP029108.1|AWF13703.1|2213710_2214013_-|GIY-YIG-catalytic-domain-protein
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>CP029108.1|AWF12732.1|2213220_2213724_+|acetyltransferase-domain-protein
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>CP029108.1|AWF11532.1|2212702_2213227_+|SCP-2-sterol-transfer-family-protein
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKNAPETKQTSVGEPC
>CP029108.1|AWF11881.1|2211498_2212494_-|hypothetical-protein
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>CP029108.1|AWF13492.1|2210611_2211490_-|peptidase-U32-family-protein
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>CP029108.1|AWF11959.1|2209398_2210406_-|luciferase-oxidoreductase,-group-1-family-protein
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPNVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
>CP029108.1|AWF11287.1|2217085_2217661_-|BON-domain-protein
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
>CP029108.1|AWF12105.1|2217670_2218261_-|SIS-domain-protein
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>CP029108.1|AWF13534.1|2218280_2218676_-|hypothetical-protein
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS
>CP029108.1|AWF09957.1|2218633_2220670_-|lppC-lipofamily-protein
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>CP029108.1|AWF13669.1|2220734_2221595_+|ribosomal-RNA-small-subunit-methyltransferase-I
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>CP029108.1|AWF10944.1|2221637_2222729_-|fimbrial-family-protein
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQAGYYKLNDSLDIKTTLKANDIPGLVTDQTVSVNTRFTQIKSNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNAPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR
>CP029108.1|AWF09395.1|2222739_2224905_-|papC-N-terminal-domain-protein
MDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYSGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>CP029108.1|AWF12278.1|2225402_2225906_+|putative-transposase
MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
>CP029108.1|AWF11343.1|2226062_2226662_-|gram-negative-pili-assembly-chaperone,-C-terminal-domain-protein
MIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDNVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>CP029108.1|AWF10956.1|2226837_2227422_-|fimbrial-family-protein
MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRSVGDRSPKIPFTIPLVNCPVTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGTAATGVGIRIDDAESGNLMPLNAMGNDNTVYQIPADSAGIVNVDLIAYYVSTVEASEITPGEADAVVNVTLDYR

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Click the colored protein region to show detailed information

Crispr_ID: CP029108_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_6

2261833-2261950

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_6

>merge|CP029108|6|2261833-2261950|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>CP029108|6|5|2261833-2261950|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF13005.1\|2266275_2266668_-\|inner-membrane-protein-YqjF	unknown	unknown	gnl\|CDD\|225168
CP029108.1\|AWF13645.1\|2251124_2252114_+\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236317
CP029108.1\|AWF09499.1\|2249554_2249899_-\|putative-dNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
CP029108.1\|AWF11031.1\|2263016_2263913_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|176122
CP029108.1\|AWF10212.1\|2254734_2257029_+\|formate-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
CP029108.1\|AWF13364.1\|2253492_2254701_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|183484
CP029108.1\|AWF13102.1\|2263963_2264320_-\|inner-membrane-protein-YhaI	unknown	unknown	gnl\|CDD\|225694
CP029108.1\|AWF12025.1\|2262210_2262813_-\|pirin-like-protein-YhaK	unknown	unknown	gnl\|CDD\|224655
CP029108.1\|AWF12488.1\|2257042_2257432_+\|putative-reactive-intermediate-deaminase-TdcF	unknown	unknown	gnl\|CDD\|105214
CP029108.1\|AWF11142.1\|2257503_2258868_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
CP029108.1\|AWF09609.1\|2265219_2266206_-\|glutathionyl-hydroquinone-reductase-YqjG	unknown	unknown	gnl\|CDD\|223512
CP029108.1\|AWF11319.1\|2266853_2267153_-\|yqjK-like-family-protein	unknown	unknown	gnl\|CDD\|372871
CP029108.1\|AWF12631.1\|2252216_2253467_+\|serine-transporter-family-protein	unknown	unknown	gnl\|CDD\|184191
CP029108.1\|AWF12044.1\|2259142_2260474_+\|inner-membrane-transport-protein-YhaO	unknown	unknown	gnl\|CDD\|273283
CP029108.1\|AWF09495.1\|2267549_2267855_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226941
CP029108.1\|AWF10888.1\|2260501_2261812_+\|serine-dehydratase-alpha-chain-family-protein	unknown	unknown	gnl\|CDD\|226206
CP029108.1\|AWF13454.1\|2250087_2251026_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|182391
CP029108.1\|AWF09700.1\|2267142_2267547_-\|inner-membrane-protein-YqjE	unknown	unknown	gnl\|CDD\|227681
CP029108.1\|AWF13053.1\|2262023_2262191_-\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF12914.1\|2264561_2264927_-\|inner-membrane-protein-YhaH	unknown	unknown	gnl\|CDD\|225694

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF13005.1\|2266275_2266668_-\|inner-membrane-protein-YqjF	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.56972e-25
CP029108.1\|AWF13645.1\|2251124_2252114_+\|threonine-ammonia-lyase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
CP029108.1\|AWF09499.1\|2249554_2249899_-\|putative-dNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	3.36123e-66
CP029108.1\|AWF11031.1\|2263016_2263913_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51
CP029108.1\|AWF10212.1\|2254734_2257029_+\|formate-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP029108.1\|AWF13364.1\|2253492_2254701_+\|acetate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
CP029108.1\|AWF09700.1\|2267142_2267547_-\|inner-membrane-protein-YqjE	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
CP029108.1\|AWF12025.1\|2262210_2262813_-\|pirin-like-protein-YhaK	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	5.39521e-53
CP029108.1\|AWF12488.1\|2257042_2257432_+\|putative-reactive-intermediate-deaminase-TdcF	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	1.34001e-81
CP029108.1\|AWF11142.1\|2257503_2258868_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
CP029108.1\|AWF09609.1\|2265219_2266206_-\|glutathionyl-hydroquinone-reductase-YqjG	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
CP029108.1\|AWF11319.1\|2266853_2267153_-\|yqjK-like-family-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
CP029108.1\|AWF12631.1\|2252216_2253467_+\|serine-transporter-family-protein	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
CP029108.1\|AWF12044.1\|2259142_2260474_+\|inner-membrane-transport-protein-YhaO	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
CP029108.1\|AWF09495.1\|2267549_2267855_-\|hypothetical-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
CP029108.1\|AWF10888.1\|2260501_2261812_+\|serine-dehydratase-alpha-chain-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
CP029108.1\|AWF13454.1\|2250087_2251026_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
CP029108.1\|AWF13102.1\|2263963_2264320_-\|inner-membrane-protein-YhaI	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.64644e-35
CP029108.1\|AWF12914.1\|2264561_2264927_-\|inner-membrane-protein-YhaH	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42

>CP029108.1|AWF10888.1|2260501_2261812_+|serine-dehydratase-alpha-chain-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>CP029108.1|AWF12044.1|2259142_2260474_+|inner-membrane-transport-protein-YhaO
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>CP029108.1|AWF11142.1|2257503_2258868_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>CP029108.1|AWF12488.1|2257042_2257432_+|putative-reactive-intermediate-deaminase-TdcF
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSYVQVARLPKDVKLEIEAIAVRSA
>CP029108.1|AWF10212.1|2254734_2257029_+|formate-acetyltransferase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>CP029108.1|AWF13364.1|2253492_2254701_+|acetate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>CP029108.1|AWF12631.1|2252216_2253467_+|serine-transporter-family-protein
MFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>CP029108.1|AWF13645.1|2251124_2252114_+|threonine-ammonia-lyase
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>CP029108.1|AWF13454.1|2250087_2251026_+|lysR-substrate-binding-domain-protein
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>CP029108.1|AWF09499.1|2249554_2249899_-|putative-dNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNIKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>CP029108.1|AWF13053.1|2262023_2262191_-|hypothetical-protein
MMSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>CP029108.1|AWF12025.1|2262210_2262813_-|pirin-like-protein-YhaK
MLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>CP029108.1|AWF11031.1|2263016_2263913_+|lysR-substrate-binding-domain-protein
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>CP029108.1|AWF13102.1|2263963_2264320_-|inner-membrane-protein-YhaI
MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEGNSGSNRYGNDPKFGSN
>CP029108.1|AWF12914.1|2264561_2264927_-|inner-membrane-protein-YhaH
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>CP029108.1|AWF09609.1|2265219_2266206_-|glutathionyl-hydroquinone-reductase-YqjG
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISNYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>CP029108.1|AWF13005.1|2266275_2266668_-|inner-membrane-protein-YqjF
MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>CP029108.1|AWF11319.1|2266853_2267153_-|yqjK-like-family-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>CP029108.1|AWF09700.1|2267142_2267547_-|inner-membrane-protein-YqjE
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>CP029108.1|AWF09495.1|2267549_2267855_-|hypothetical-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029108_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_7

2635283-2635799

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

The CRISPR arrays of CP029108_7

>merge|CP029108|7|2635283-2635799|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTCCACGCTGTAACGGCCATCATTAAGTTTAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGGCTGATGGTCTGGGAGTGTCCATCGGGCAACTGAGTTCCCCGCGCCAGCGGGGATAAACCGGAAGTAGGCCTGACAGTGATTGAACGCATACTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTTGGGGCGGCGCAATAACGAGACGATACGCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGAGTGGCACTTCTGGGGTAGCGGCGGCCCTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGCGCTCAGACGTTGCGTGAGTGAACCAGAGTTCCCCGCGCCAGCGGGGATAAACCGAAATATCCAGGGCTGGGCTGGAGGCAGACGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCGGAATGCATTCTGAAGGTTTGCTGTATATGAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP029108|7|2|2635283-2635799|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP029108|7|6|2635283-2635799|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP029108|7|1|2635283-2635799|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF13636.1\|2644031_2644892_+\|electron-transfer-flavodomain-protein	unknown	unknown	gnl\|CDD\|224936
CP029108.1\|AWF12280.1\|2637941_2639219_-\|inner-membrane-protein-YqcE	unknown	unknown	gnl\|CDD\|349949
CP029108.1\|AWF13486.1\|2634271_2634943_+\|putative-7-cyano-7-deazaguanosine-(preQ0)-biosynthesis-protein-QueE	unknown	unknown	gnl\|CDD\|275126
CP029108.1\|AWF10817.1\|2631748_2633047_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP029108.1\|AWF13778.1\|2640392_2641847_+\|FAD-binding-domain-protein	unknown	unknown	gnl\|CDD\|223354
CP029108.1\|AWF11342.1\|2626038_2628273_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP029108.1\|AWF11348.1\|2624689_2625991_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|237291
CP029108.1\|AWF10437.1\|2629004_2629796_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP029108.1\|AWF12423.1\|2639537_2640323_+\|KR-domain-protein	unknown	unknown	gnl\|CDD\|187605
CP029108.1\|AWF10826.1\|2633992_2634133_-\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF13804.1\|2645631_2645892_-\|putative-4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|225289
CP029108.1\|AWF10592.1\|2628598_2628934_+\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP029108.1\|AWF10030.1\|2636436_2637915_-\|FGGY-family-of-carbohydrate-kinase,-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|212662
CP029108.1\|AWF13084.1\|2641940_2643278_+\|inner-membrane-metabolite-transport-protein-YgcS	unknown	unknown	gnl\|CDD\|340929
CP029108.1\|AWF09865.1\|2645039_2645615_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224865
CP029108.1\|AWF09796.1\|2643255_2644035_+\|electron-transfer-flavodomain-protein	unknown	unknown	gnl\|CDD\|224997
CP029108.1\|AWF09733.1\|2633106_2633979_-\|repair-family-protein	unknown	unknown	gnl\|CDD\|224429
CP029108.1\|AWF11371.1\|2628350_2628599_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP029108.1\|AWF11688.1\|2645882_2647154_-\|HI0933-like-family-protein	unknown	unknown	gnl\|CDD\|182194
CP029108.1\|AWF11253.1\|2630023_2631661_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF12280.1\|2637941_2639219_-\|inner-membrane-protein-YqcE	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.84544e-29
CP029108.1\|AWF13486.1\|2634271_2634943_+\|putative-7-cyano-7-deazaguanosine-(preQ0)-biosynthesis-protein-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
CP029108.1\|AWF10817.1\|2631748_2633047_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP029108.1\|AWF13778.1\|2640392_2641847_+\|FAD-binding-domain-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
CP029108.1\|AWF11342.1\|2626038_2628273_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP029108.1\|AWF11348.1\|2624689_2625991_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP029108.1\|AWF10437.1\|2629004_2629796_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
CP029108.1\|AWF12423.1\|2639537_2640323_+\|KR-domain-protein	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14687e-138
CP029108.1\|AWF13636.1\|2644031_2644892_+\|electron-transfer-flavodomain-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.47186e-88
CP029108.1\|AWF13804.1\|2645631_2645892_-\|putative-4Fe-4S-binding-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
CP029108.1\|AWF10592.1\|2628598_2628934_+\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP029108.1\|AWF10030.1\|2636436_2637915_-\|FGGY-family-of-carbohydrate-kinase,-N-terminal-domain-protein	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	9.76816e-108
CP029108.1\|AWF13084.1\|2641940_2643278_+\|inner-membrane-metabolite-transport-protein-YgcS	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.01191e-50
CP029108.1\|AWF09865.1\|2645039_2645615_-\|hypothetical-protein	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP029108.1\|AWF09796.1\|2643255_2644035_+\|electron-transfer-flavodomain-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62
CP029108.1\|AWF09733.1\|2633106_2633979_-\|repair-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.92123e-100
CP029108.1\|AWF11371.1\|2628350_2628599_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP029108.1\|AWF11688.1\|2645882_2647154_-\|HI0933-like-family-protein	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
CP029108.1\|AWF11253.1\|2630023_2631661_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>CP029108.1|AWF13486.1|2634271_2634943_+|putative-7-cyano-7-deazaguanosine-(preQ0)-biosynthesis-protein-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP029108.1|AWF10826.1|2633992_2634133_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>CP029108.1|AWF09733.1|2633106_2633979_-|repair-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQCSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTTFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>CP029108.1|AWF10817.1|2631748_2633047_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP029108.1|AWF11253.1|2630023_2631661_+|CTP-synthase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP029108.1|AWF10437.1|2629004_2629796_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP029108.1|AWF10592.1|2628598_2628934_+|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP029108.1|AWF11371.1|2628350_2628599_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP029108.1|AWF11342.1|2626038_2628273_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP029108.1|AWF11348.1|2624689_2625991_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP029108.1|AWF10030.1|2636436_2637915_-|FGGY-family-of-carbohydrate-kinase,-N-terminal-domain-protein
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP029108.1|AWF12280.1|2637941_2639219_-|inner-membrane-protein-YqcE
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>CP029108.1|AWF12423.1|2639537_2640323_+|KR-domain-protein
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP029108.1|AWF13778.1|2640392_2641847_+|FAD-binding-domain-protein
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP029108.1|AWF13084.1|2641940_2643278_+|inner-membrane-metabolite-transport-protein-YgcS
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISEIPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP029108.1|AWF09796.1|2643255_2644035_+|electron-transfer-flavodomain-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>CP029108.1|AWF13636.1|2644031_2644892_+|electron-transfer-flavodomain-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLIIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>CP029108.1|AWF09865.1|2645039_2645615_-|hypothetical-protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP029108.1|AWF13804.1|2645631_2645892_-|putative-4Fe-4S-binding-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP029108.1|AWF11688.1|2645882_2647154_-|HI0933-like-family-protein
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP029108_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_8

2658184-2658762

Unclear

I-E

Consensus_repeat	Method
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

cas2,cas1,cas6e,cas5,cas7,cas3

The CRISPR arrays of CP029108_8

>merge|CP029108|8|2658184-2658762|CRISPRCasFinder,PILER-CR,CRT
TGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCCCGCGCAATTCCGGGAGCATCCGCAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGACGGACAAAATATATATTGATTTGCGAATTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAAAGAAACTGCCGACAAATCCCTGTTCGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCGTCACCGACGCGCAGTGGCGCTACCGTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATCTAACGCGCTGTAAAAATTCCGTGCTTTGTGTTCCCCGCGCCAGCGGGGATAAACCATGCGGATTACCGGCAAAACATGGGAGCAAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAACGGCTGGCGAAGCAGGTGGCTGGCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTACCGCCCCGCAGAGGCGCTGGCAGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATGACCTGTCGCTAAAACTCGCCGCGTACAGTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP029108|8|7|2658184-2658762|CRISPRCasFinder
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCCGCGCAATTCCGGGAGCATCCGCAAT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGACAAAATATATATTGATTTGCGAATTA
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAGAAACTGCCGACAAATCCCTGTTCGT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGTCACCGACGCGCAGTGGCGCTACCGTG
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTT
TGTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAAC
CGTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGT
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATC
CGTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTAC
AGTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP029108|8|3|2658185-2658761|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGCCCGCGCAATTCCGGGAGCATCCGCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGGACAAAATATATATTGATTTGCGAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTAAAGAAACTGCCGACAAATCCCTGTTCGTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCGTCACCGACGCGCAGTGGCGCTACCGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	ATGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGATGACCTGTCGCTAAAACTCGCCGCGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACC

>CP029108|8|2|2658185-2658762|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCCCGCGCAATTCCGGGAGCATCCGCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGACAAAATATATATTGATTTGCGAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAAAGAAACTGCCGACAAATCCCTGTTCGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGTCACCGACGCGCAGTGGCGCTACCGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF10980.1\|2666187_2666949_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029108.1\|AWF12761.1\|2647586_2647700_+\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF11177.1\|2647912_2649712_+\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	unknown	unknown	gnl\|CDD\|182862
CP029108.1\|AWF09725.1\|2665157_2666207_+\|tRNA-pseudouridine-synthase-D	unknown	unknown	gnl\|CDD\|234884
CP029108.1\|AWF13771.1\|2654604_2655489_+\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|187777
CP029108.1\|AWF10397.1\|2663124_2663448_+\|inner-membrane-protein-YgbE	unknown	unknown	gnl\|CDD\|371891
CP029108.1\|AWF09888.1\|2663986_2664682_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029108.1\|AWF12126.1\|2655499_2656246_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029108.1\|AWF10373.1\|2662469_2663075_+\|adenylylsulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029108.1\|AWF12596.1\|2661042_2662470_+\|sulfate-adenylyltransferase,-large-subunit	unknown	unknown	gnl\|CDD\|235349
CP029108.1\|AWF13047.1\|2664681_2665161_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029108.1\|AWF10354.1\|2660132_2661041_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP029108.1\|AWF09678.1\|2663641_2663953_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029108.1\|AWF09605.1\|2657800_2658088_+\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP029108.1\|AWF11475.1\|2651497_2652232_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP029108.1\|AWF09901.1\|2658843_2659881_-\|M42-glutamyl-aminopeptidase-family-protein	unknown	unknown	gnl\|CDD\|182299
CP029108.1\|AWF13187.1\|2656227_2656878_+\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP029108.1\|AWF09839.1\|2652842_2654630_+\|CRISPR-associated-endonuclease-Cas3-HD	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP029108.1\|AWF12698.1\|2649711_2651424_+\|sulfite-reductase-(NADPH)-hemoprotein,-beta-component	unknown	unknown	gnl\|CDD\|237402
CP029108.1\|AWF13006.1\|2656922_2657798_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF10980.1\|2666187_2666949_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.52694e-150
CP029108.1\|AWF11177.1\|2647912_2649712_+\|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP029108.1\|AWF09725.1\|2665157_2666207_+\|tRNA-pseudouridine-synthase-D	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029108.1\|AWF13771.1\|2654604_2655489_+\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	gnl\|CDD\|187777	cd09646, Cas7_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cse4/CasC family.	4.67768e-119
CP029108.1\|AWF10397.1\|2663124_2663448_+\|inner-membrane-protein-YgbE	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP029108.1\|AWF09888.1\|2663986_2664682_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.27744e-122
CP029108.1\|AWF12126.1\|2655499_2656246_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.83917e-49
CP029108.1\|AWF10373.1\|2662469_2663075_+\|adenylylsulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP029108.1\|AWF12596.1\|2661042_2662470_+\|sulfate-adenylyltransferase,-large-subunit	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029108.1\|AWF13047.1\|2664681_2665161_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.39469e-104
CP029108.1\|AWF10354.1\|2660132_2661041_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029108.1\|AWF09678.1\|2663641_2663953_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP029108.1\|AWF09605.1\|2657800_2658088_+\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.24092e-63
CP029108.1\|AWF11475.1\|2651497_2652232_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.33579e-136
CP029108.1\|AWF09901.1\|2658843_2659881_-\|M42-glutamyl-aminopeptidase-family-protein	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP029108.1\|AWF13187.1\|2656227_2656878_+\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.0289e-91
CP029108.1\|AWF09839.1\|2652842_2654630_+\|CRISPR-associated-endonuclease-Cas3-HD	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.2897e-101
CP029108.1\|AWF12698.1\|2649711_2651424_+\|sulfite-reductase-(NADPH)-hemoprotein,-beta-component	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP029108.1\|AWF13006.1\|2656922_2657798_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.22293e-152

>CP029108.1|AWF09605.1|2657800_2658088_+|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E
MVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP029108.1|AWF13006.1|2656922_2657798_+|CRISPR-associated-endonuclease-Cas1
MIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP029108.1|AWF13187.1|2656227_2656878_+|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELRTGQQLCFNLRANPTICKSGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP029108.1|AWF12126.1|2655499_2656246_+|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP029108.1|AWF13771.1|2654604_2655489_+|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E
MAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWAMAEKGTEQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP029108.1|AWF09839.1|2652842_2654630_+|CRISPR-associated-endonuclease-Cas3-HD
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKEGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKALFPRIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAQAMDIKHYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLGGPYWYS
>CP029108.1|AWF11475.1|2651497_2652232_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMLEEETRFFGLKRECGLHEG
>CP029108.1|AWF12698.1|2649711_2651424_+|sulfite-reductase-(NADPH)-hemoprotein,-beta-component
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>CP029108.1|AWF11177.1|2647912_2649712_+|sulfite-reductase-[NADPH]-flavoprotein,-alpha-component
MTTQVPPSALLPLNPEQLVRLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>CP029108.1|AWF12761.1|2647586_2647700_+|hypothetical-protein
MDIIISLQDDKTAVEYRKGCFFALSKTTLLRKIADLS
>CP029108.1|AWF09901.1|2658843_2659881_-|M42-glutamyl-aminopeptidase-family-protein
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP029108.1|AWF10354.1|2660132_2661041_+|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP029108.1|AWF12596.1|2661042_2662470_+|sulfate-adenylyltransferase,-large-subunit
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP029108.1|AWF10373.1|2662469_2663075_+|adenylylsulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP029108.1|AWF10397.1|2663124_2663448_+|inner-membrane-protein-YgbE
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP029108.1|AWF09678.1|2663641_2663953_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP029108.1|AWF09888.1|2663986_2664682_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP029108.1|AWF13047.1|2664681_2665161_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYERGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP029108.1|AWF09725.1|2665157_2666207_+|tRNA-pseudouridine-synthase-D
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP029108.1|AWF10980.1|2666187_2666949_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVICSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP029108_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_9

3160085-3160202

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_9

>merge|CP029108|9|3160085-3160202|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>CP029108|9|8|3160085-3160202|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF12296.1\|3167951_3170579_+\|DNA-gyrase,-A-subunit	unknown	unknown	gnl\|CDD\|235502
CP029108.1\|AWF12050.1\|3149357_3150617_-\|glycerol-3-phosphate-dehydrogenase,-anaerobic,-B-subunit	unknown	unknown	gnl\|CDD\|225617
CP029108.1\|AWF11788.1\|3160221_3162507_-\|ribonucleoside-diphosphate-reductase,-alpha-subunit	unknown	unknown	gnl\|CDD\|181649
CP029108.1\|AWF10569.1\|3172412_3173036_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225774
CP029108.1\|AWF10584.1\|3155723_3156227_+\|putative-transposase	unknown	unknown	gnl\|CDD\|281403
CP029108.1\|AWF13832.1\|3152507_3153866_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
CP029108.1\|AWF12590.1\|3173059_3177574_+\|PKD-domain-protein	unknown	unknown	gnl\|CDD\|225248
CP029108.1\|AWF13593.1\|3167082_3167805_-\|3-demethylubiquinone-9-3-O-methyltransferase	unknown	unknown	gnl\|CDD\|235350
CP029108.1\|AWF10492.1\|3157899_3158550_+\|lipopolysaccharide-kinase-family-protein	unknown	unknown	gnl\|CDD\|182136
CP029108.1\|AWF13231.1\|3157478_3157685_-\|putative-yfaH	unknown	unknown	gnl\|CDD\|182050
CP029108.1\|AWF13589.1\|3158857_3159988_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|181647
CP029108.1\|AWF12540.1\|3155165_3155306_-\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF12992.1\|3177549_3177675_+\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF13596.1\|3179228_3180005_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227021
CP029108.1\|AWF12728.1\|3170727_3172416_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227030
CP029108.1\|AWF13143.1\|3150606_3152235_-\|glycerol-3-phosphate-dehydrogenase,-anaerobic,-A-subunit	unknown	unknown	gnl\|CDD\|236847
CP029108.1\|AWF13491.1\|3163202_3166955_+\|outer-membrane-autotransporter-barrel-domain-protein	unknown	unknown	gnl\|CDD\|182059
CP029108.1\|AWF10364.1\|3177703_3179224_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227732
CP029108.1\|AWF13579.1\|3153996_3154947_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
CP029108.1\|AWF09951.1\|3158603_3158858_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-protein	unknown	unknown	gnl\|CDD\|182668

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF12296.1\|3167951_3170579_+\|DNA-gyrase,-A-subunit	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP029108.1\|AWF12050.1\|3149357_3150617_-\|glycerol-3-phosphate-dehydrogenase,-anaerobic,-B-subunit	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
CP029108.1\|AWF10492.1\|3157899_3158550_+\|lipopolysaccharide-kinase-family-protein	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.43283e-158
CP029108.1\|AWF11788.1\|3160221_3162507_-\|ribonucleoside-diphosphate-reductase,-alpha-subunit	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
CP029108.1\|AWF10569.1\|3172412_3173036_+\|hypothetical-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
CP029108.1\|AWF10584.1\|3155723_3156227_+\|putative-transposase	gnl\|CDD\|281403	pfam03400, DDE_Tnp_IS1, IS1 transposase. Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases.	4.4429e-85
CP029108.1\|AWF13832.1\|3152507_3153866_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
CP029108.1\|AWF12590.1\|3173059_3177574_+\|PKD-domain-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP029108.1\|AWF13593.1\|3167082_3167805_-\|3-demethylubiquinone-9-3-O-methyltransferase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	9.80223e-171
CP029108.1\|AWF13491.1\|3163202_3166955_+\|outer-membrane-autotransporter-barrel-domain-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
CP029108.1\|AWF13231.1\|3157478_3157685_-\|putative-yfaH	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	2.02381e-36
CP029108.1\|AWF13589.1\|3158857_3159988_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
CP029108.1\|AWF13596.1\|3179228_3180005_+\|hypothetical-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.0163e-152
CP029108.1\|AWF12728.1\|3170727_3172416_+\|hypothetical-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP029108.1\|AWF13143.1\|3150606_3152235_-\|glycerol-3-phosphate-dehydrogenase,-anaerobic,-A-subunit	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
CP029108.1\|AWF10364.1\|3177703_3179224_+\|hypothetical-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	1.96181e-110
CP029108.1\|AWF13579.1\|3153996_3154947_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
CP029108.1\|AWF09951.1\|3158603_3158858_-\|2Fe-2S-iron-sulfur-cluster-binding-domain-protein	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53

>CP029108.1|AWF13589.1|3158857_3159988_-|ribonucleoside-diphosphate-reductase-1-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>CP029108.1|AWF09951.1|3158603_3158858_-|2Fe-2S-iron-sulfur-cluster-binding-domain-protein
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>CP029108.1|AWF10492.1|3157899_3158550_+|lipopolysaccharide-kinase-family-protein
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>CP029108.1|AWF13231.1|3157478_3157685_-|putative-yfaH
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQTCTEQLVVSGKI
>CP029108.1|AWF10584.1|3155723_3156227_+|putative-transposase
MPGNCPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQ
>CP029108.1|AWF12540.1|3155165_3155306_-|hypothetical-protein
MIQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKCE
>CP029108.1|AWF13579.1|3153996_3154947_+|glycerophosphoryl-diester-phosphodiesterase
MPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYSYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDVLYNKAGVNGLFTDFPDKAVKFLNKE
>CP029108.1|AWF13832.1|3152507_3153866_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>CP029108.1|AWF13143.1|3150606_3152235_-|glycerol-3-phosphate-dehydrogenase,-anaerobic,-A-subunit
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQDPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>CP029108.1|AWF12050.1|3149357_3150617_-|glycerol-3-phosphate-dehydrogenase,-anaerobic,-B-subunit
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>CP029108.1|AWF11788.1|3160221_3162507_-|ribonucleoside-diphosphate-reductase,-alpha-subunit
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>CP029108.1|AWF13491.1|3163202_3166955_+|outer-membrane-autotransporter-barrel-domain-protein
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKMVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>CP029108.1|AWF13593.1|3167082_3167805_-|3-demethylubiquinone-9-3-O-methyltransferase
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEKHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNSFKLGPGVDVNYMLHTQNK
>CP029108.1|AWF12296.1|3167951_3170579_+|DNA-gyrase,-A-subunit
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>CP029108.1|AWF12728.1|3170727_3172416_+|hypothetical-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>CP029108.1|AWF10569.1|3172412_3173036_+|hypothetical-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>CP029108.1|AWF12590.1|3173059_3177574_+|PKD-domain-protein
MGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQVNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLITGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEIARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYMRSYAPAQQSVAAGSEWTRMQVK
>CP029108.1|AWF12992.1|3177549_3177675_+|hypothetical-protein
MDQDAGEISELAQNRLAIGVGYSANACGGAAVTTGAAGRAA
>CP029108.1|AWF10364.1|3177703_3179224_+|hypothetical-protein
MTNVSTLPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>CP029108.1|AWF13596.1|3179228_3180005_+|hypothetical-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPVEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW

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Crispr_ID: CP029108_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_10

3756772-3756895

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_10

>merge|CP029108|10|3756772-3756895|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP029108|10|9|3756772-3756895|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF12284.1\|3764467_3765493_-\|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein	unknown	unknown	gnl\|CDD\|236739
CP029108.1\|AWF12537.1\|3753825_3754590_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP029108.1\|AWF10747.1\|3758506_3759880_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP029108.1\|AWF10189.1\|3752988_3753774_+\|prokaryotic-cytochrome-b561-family-protein	unknown	unknown	gnl\|CDD\|184968
CP029108.1\|AWF09993.1\|3762214_3763426_-\|inner-membrane-transport-protein-YdhC	unknown	unknown	gnl\|CDD\|182924
CP029108.1\|AWF12682.1\|3763538_3764471_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|182948
CP029108.1\|AWF12074.1\|3757209_3758466_+\|pertactin-family-protein	unknown	unknown	gnl\|CDD\|137602
CP029108.1\|AWF10704.1\|3765761_3765881_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341227
CP029108.1\|AWF11246.1\|3760775_3761924_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP029108.1\|AWF10459.1\|3754601_3756206_-\|FAD-NAD(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|182134
CP029108.1\|AWF11180.1\|3767361_3767943_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|182534
CP029108.1\|AWF11231.1\|3752437_3752992_+\|4Fe-4S-dicluster-domain-protein	unknown	unknown	gnl\|CDD\|274451
CP029108.1\|AWF13140.1\|3760094_3760736_+\|riboflavin-synthase,-alpha-subunit	unknown	unknown	gnl\|CDD\|183846
CP029108.1\|AWF12303.1\|3751621_3752260_+\|putative-oxidoreductase	unknown	unknown	gnl\|CDD\|182160
CP029108.1\|AWF13661.1\|3748859_3749486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182135
CP029108.1\|AWF09436.1\|3756331_3756637_-\|putative-monooxygenase-YdhR	unknown	unknown	gnl\|CDD\|182975
CP029108.1\|AWF11589.1\|3748694_3748832_-\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF10643.1\|3748233_3748404_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182359
CP029108.1\|AWF13220.1\|3766046_3767216_+\|inner-membrane-transport-protein-YdhP	unknown	unknown	gnl\|CDD\|225371
CP029108.1\|AWF13600.1\|3749506_3751609_+\|aldehyde-ferredoxin-oxidoreductase,-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|236629

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF12284.1\|3764467_3765493_-\|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP029108.1\|AWF12537.1\|3753825_3754590_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	9.5135e-164
CP029108.1\|AWF10747.1\|3758506_3759880_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP029108.1\|AWF10189.1\|3752988_3753774_+\|prokaryotic-cytochrome-b561-family-protein	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.33298e-163
CP029108.1\|AWF09993.1\|3762214_3763426_-\|inner-membrane-transport-protein-YdhC	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP029108.1\|AWF12682.1\|3763538_3764471_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP029108.1\|AWF12074.1\|3757209_3758466_+\|pertactin-family-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP029108.1\|AWF10704.1\|3765761_3765881_+\|hypothetical-protein	gnl\|CDD\|341227	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated.	8.33023e-06
CP029108.1\|AWF10459.1\|3754601_3756206_-\|FAD-NAD(P)-binding-family-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP029108.1\|AWF11180.1\|3767361_3767943_-\|superoxide-dismutase	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
CP029108.1\|AWF11231.1\|3752437_3752992_+\|4Fe-4S-dicluster-domain-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.57005e-64
CP029108.1\|AWF13140.1\|3760094_3760736_+\|riboflavin-synthase,-alpha-subunit	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.8868e-122
CP029108.1\|AWF12303.1\|3751621_3752260_+\|putative-oxidoreductase	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.93584e-120
CP029108.1\|AWF13661.1\|3748859_3749486_+\|hypothetical-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
CP029108.1\|AWF09436.1\|3756331_3756637_-\|putative-monooxygenase-YdhR	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
CP029108.1\|AWF11246.1\|3760775_3761924_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP029108.1\|AWF10643.1\|3748233_3748404_+\|hypothetical-protein	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	8.7801e-27
CP029108.1\|AWF13220.1\|3766046_3767216_+\|inner-membrane-transport-protein-YdhP	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
CP029108.1\|AWF13600.1\|3749506_3751609_+\|aldehyde-ferredoxin-oxidoreductase,-N-terminal-domain-protein	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0

>CP029108.1|AWF09436.1|3756331_3756637_-|putative-monooxygenase-YdhR
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP029108.1|AWF10459.1|3754601_3756206_-|FAD-NAD(P)-binding-family-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLVVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>CP029108.1|AWF12537.1|3753825_3754590_+|hypothetical-protein
MYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLAQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP029108.1|AWF10189.1|3752988_3753774_+|prokaryotic-cytochrome-b561-family-protein
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP029108.1|AWF11231.1|3752437_3752992_+|4Fe-4S-dicluster-domain-protein
MIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP029108.1|AWF12303.1|3751621_3752260_+|putative-oxidoreductase
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP029108.1|AWF13600.1|3749506_3751609_+|aldehyde-ferredoxin-oxidoreductase,-N-terminal-domain-protein
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKELFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>CP029108.1|AWF13661.1|3748859_3749486_+|hypothetical-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP029108.1|AWF11589.1|3748694_3748832_-|hypothetical-protein
MLTIQQPDIKHSTNTLLTLSPTPDIFPNPIVYEKRFNADKLILYG
>CP029108.1|AWF10643.1|3748233_3748404_+|hypothetical-protein
MCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP029108.1|AWF12074.1|3757209_3758466_+|pertactin-family-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP029108.1|AWF10747.1|3758506_3759880_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>CP029108.1|AWF13140.1|3760094_3760736_+|riboflavin-synthase,-alpha-subunit
MFTGIVQGTVKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP029108.1|AWF11246.1|3760775_3761924_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP029108.1|AWF09993.1|3762214_3763426_-|inner-membrane-transport-protein-YdhC
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVIAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>CP029108.1|AWF12682.1|3763538_3764471_+|lysR-substrate-binding-domain-protein
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP029108.1|AWF12284.1|3764467_3765493_-|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP029108.1|AWF10704.1|3765761_3765881_+|hypothetical-protein
MCGNKKGENLMSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP029108.1|AWF13220.1|3766046_3767216_+|inner-membrane-transport-protein-YdhP
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>CP029108.1|AWF11180.1|3767361_3767943_-|superoxide-dismutase
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: CP029108_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029108_11

4411980-4412071

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029108_11

>merge|CP029108|11|4411980-4412071|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>CP029108|11|10|4411980-4412071|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029108.1\|AWF11063.1\|4401494_4405457_+\|bifunctional-protein-PutA	unknown	unknown	gnl\|CDD\|236989
CP029108.1\|AWF13225.1\|4401152_4401371_+\|hypothetical-protein	unknown	unknown	unknown
CP029108.1\|AWF12388.1\|4414768_4414900_-\|putative-membrane-protein	unknown	unknown	unknown
CP029108.1\|AWF11373.1\|4412494_4413091_+\|quinone-oxidoreductase,-type-IV	unknown	unknown	gnl\|CDD\|179647
CP029108.1\|AWF11005.1\|4414909_4416169_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182074
CP029108.1\|AWF13795.1\|4417348_4417654_+\|chaperone-modulatory-protein-CbpM	unknown	unknown	gnl\|CDD\|182346
CP029108.1\|AWF12289.1\|4409421_4410012_+\|putative-malonic-semialdehyde-reductase-RutE	unknown	unknown	gnl\|CDD\|180040
CP029108.1\|AWF13503.1\|4407513_4408206_+\|pyrimidine-utilization-protein-B	unknown	unknown	gnl\|CDD\|163356
CP029108.1\|AWF13429.1\|4413111_4413339_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
CP029108.1\|AWF13724.1\|4405496_4406135_-\|pyrimidine-utilization-regulatory-protein-R	unknown	unknown	gnl\|CDD\|184970
CP029108.1\|AWF11613.1\|4410022_4410517_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
CP029108.1\|AWF12500.1\|4408217_4408604_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
CP029108.1\|AWF10287.1\|4410537_4411866_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
CP029108.1\|AWF12295.1\|4406422_4407514_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
CP029108.1\|AWF12801.1\|4417746_4418346_-\|chaperone-protein-TorD	unknown	unknown	gnl\|CDD\|235326
CP029108.1\|AWF10610.1\|4413376_4414618_-\|glucose-1-phosphatase	unknown	unknown	gnl\|CDD\|182284
CP029108.1\|AWF12217.1\|4418342_4420889_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
CP029108.1\|AWF13530.1\|4420888_4422061_-\|trimethylamine-N-oxide-reductase-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
CP029108.1\|AWF10170.1\|4416428_4417349_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
CP029108.1\|AWF12054.1\|4408656_4409412_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851

Protein	Function_ID	Function_description	E-value
CP029108.1\|AWF11063.1\|4401494_4405457_+\|bifunctional-protein-PutA	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
CP029108.1\|AWF13795.1\|4417348_4417654_+\|chaperone-modulatory-protein-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
CP029108.1\|AWF11373.1\|4412494_4413091_+\|quinone-oxidoreductase,-type-IV	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
CP029108.1\|AWF11005.1\|4414909_4416169_-\|hypothetical-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
CP029108.1\|AWF11613.1\|4410022_4410517_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
CP029108.1\|AWF12289.1\|4409421_4410012_+\|putative-malonic-semialdehyde-reductase-RutE	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.24775e-128
CP029108.1\|AWF13503.1\|4407513_4408206_+\|pyrimidine-utilization-protein-B	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.60527e-169
CP029108.1\|AWF13724.1\|4405496_4406135_-\|pyrimidine-utilization-regulatory-protein-R	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	3.3044e-153
CP029108.1\|AWF13429.1\|4413111_4413339_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
CP029108.1\|AWF12500.1\|4408217_4408604_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	2.27835e-84
CP029108.1\|AWF10287.1\|4410537_4411866_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
CP029108.1\|AWF12295.1\|4406422_4407514_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
CP029108.1\|AWF12801.1\|4417746_4418346_-\|chaperone-protein-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	5.28244e-84
CP029108.1\|AWF10610.1\|4413376_4414618_-\|glucose-1-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
CP029108.1\|AWF12217.1\|4418342_4420889_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
CP029108.1\|AWF13530.1\|4420888_4422061_-\|trimethylamine-N-oxide-reductase-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
CP029108.1\|AWF10170.1\|4416428_4417349_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
CP029108.1\|AWF12054.1\|4408656_4409412_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	4.63021e-132

>CP029108.1|AWF10287.1|4410537_4411866_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAIMGVQHAVAMFGATVLMPILMGLDPNLSILMSGVGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNLLGLGKAVDFTLVSHAAWFGLPHFSTPAFNSQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP
>CP029108.1|AWF11613.1|4410022_4410517_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>CP029108.1|AWF12289.1|4409421_4410012_+|putative-malonic-semialdehyde-reductase-RutE
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDNSKLYARLPRLSFEEACGLL
>CP029108.1|AWF12054.1|4408656_4409412_+|pyrimidine-utilization-protein-D
MVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLVCVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHAVRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>CP029108.1|AWF12500.1|4408217_4408604_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRTVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>CP029108.1|AWF13503.1|4407513_4408206_+|pyrimidine-utilization-protein-B
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFVQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>CP029108.1|AWF12295.1|4406422_4407514_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>CP029108.1|AWF13724.1|4405496_4406135_-|pyrimidine-utilization-regulatory-protein-R
MTQGAVKTTGKRSRTVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>CP029108.1|AWF11063.1|4401494_4405457_+|bifunctional-protein-PutA
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>CP029108.1|AWF13225.1|4401152_4401371_+|hypothetical-protein
MFYQGDRILPEALVIHNRFNTPFTLNFSAQRHYFSSGCTLSHFLRLHLSKMLTAAEKKSELFFNPCHIDFFY
>CP029108.1|AWF11373.1|4412494_4413091_+|quinone-oxidoreductase,-type-IV
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>CP029108.1|AWF13429.1|4413111_4413339_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>CP029108.1|AWF10610.1|4413376_4414618_-|glucose-1-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAQQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>CP029108.1|AWF12388.1|4414768_4414900_-|putative-membrane-protein
MLKTIVISLTSLIIGTIASVLVTPLIFCLATGVIISGVREAGS
>CP029108.1|AWF11005.1|4414909_4416169_-|hypothetical-protein
MSSNIHGISCTANNYLKQAWNNIKNEHEKNQKYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECDSLEKEFEEMQNDNDLSLFLRTLRTNDTETYSGVSEGITYTIQYVRDIDIVRVSLPGRGSESITDFKGYYWYGFMEYIENINACDDVFSEYCLDDENMSIQPEWINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFNDLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKARLVLDTDPEQKVNEVKNFLTALSDSICSLFIVNSNVASISLGNESFSTDDDLEYGYLINTGNHYDVYLPPELFAQAYELNNKERNAQIDFLTRYAIY
>CP029108.1|AWF10170.1|4416428_4417349_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>CP029108.1|AWF13795.1|4417348_4417654_+|chaperone-modulatory-protein-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>CP029108.1|AWF12801.1|4417746_4418346_-|chaperone-protein-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVVRCRQYDSFGFYAALSQLLLVLVESDHQNR
>CP029108.1|AWF12217.1|4418342_4420889_-|trimethylamine-N-oxide-reductase-TorA
MNNKDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGAVEQVTAFNGPVEMVAQCEYVPASQVKS
>CP029108.1|AWF13530.1|4420888_4422061_-|trimethylamine-N-oxide-reductase-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDMPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029108_4	4.1\|763408\|42\|CP029108\|PILER-CR	763408-763449	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
CP029108_11	11.1\|4412006\|40\|CP029108\|CRISPRCasFinder	4412006-4412045	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP029108_4	4.2\|763467\|40\|CP029108\|PILER-CR	763467-763506	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
CP029108_10	10.1\|3756815\|38\|CP029108\|CRISPRCasFinder	3756815-3756852	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP029108_2	2.1\|550352\|48\|CP029108\|CRISPRCasFinder	550352-550399	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4089-4136	3	0.938
CP029108_2	2.1\|550352\|48\|CP029108\|CRISPRCasFinder	550352-550399	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4088-4135	3	0.938
CP029108_2	2.1\|550352\|48\|CP029108\|CRISPRCasFinder	550352-550399	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4088-4135	3	0.938
CP029108_2	2.1\|550352\|48\|CP029108\|CRISPRCasFinder	550352-550399	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4088-4135	3	0.938
CP029108_5	5.1\|2216982\|42\|CP029108\|CRISPRCasFinder	2216982-2217023	42	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30214-30255	7	0.833
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
CP029108_7	7.7\|2635678\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635678-2635709	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
CP029108_8	8.1\|2658214\|31\|CP029108\|CRISPRCasFinder	2658214-2658244	31	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	62682-62712	7	0.774
CP029108_8	8.1\|2658214\|31\|CP029108\|CRISPRCasFinder	2658214-2658244	31	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1222106-1222136	7	0.774
CP029108_8	8.1\|2658214\|31\|CP029108\|CRISPRCasFinder	2658214-2658244	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2467672-2467702	7	0.774
CP029108_8	8.4\|2658397\|31\|CP029108\|CRISPRCasFinder	2658397-2658427	31	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	17977-18007	7	0.774
CP029108_8	8.7\|2658580\|31\|CP029108\|CRISPRCasFinder	2658580-2658610	31	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530641-530671	7	0.774
CP029108_5	5.1\|2216982\|42\|CP029108\|CRISPRCasFinder	2216982-2217023	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24899-24940	8	0.81
CP029108_7	7.6\|2635617\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635617-2635648	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
CP029108_8	8.4\|2658397\|31\|CP029108\|CRISPRCasFinder	2658397-2658427	31	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	97498-97528	8	0.742
CP029108_8	8.7\|2658580\|31\|CP029108\|CRISPRCasFinder	2658580-2658610	31	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14953-14983	8	0.742
CP029108_8	8.7\|2658580\|31\|CP029108\|CRISPRCasFinder	2658580-2658610	31	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14983-15013	8	0.742
CP029108_8	8.7\|2658580\|31\|CP029108\|CRISPRCasFinder	2658580-2658610	31	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	3454-3484	8	0.742
CP029108_8	8.7\|2658580\|31\|CP029108\|CRISPRCasFinder	2658580-2658610	31	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	148992-149022	8	0.742
CP029108_8	8.10\|2658213\|33\|CP029108\|PILER-CR	2658213-2658245	33	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	62681-62713	8	0.758
CP029108_8	8.16\|2658579\|33\|CP029108\|PILER-CR	2658579-2658611	33	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530640-530672	8	0.758
CP029108_8	8.19\|2658214\|32\|CP029108\|CRT	2658214-2658245	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	62682-62713	8	0.75
CP029108_8	8.19\|2658214\|32\|CP029108\|CRT	2658214-2658245	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1222106-1222137	8	0.75
CP029108_8	8.19\|2658214\|32\|CP029108\|CRT	2658214-2658245	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2467671-2467702	8	0.75
CP029108_8	8.19\|2658214\|32\|CP029108\|CRT	2658214-2658245	32	NC_008759	Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence	12670-12701	8	0.75
CP029108_8	8.22\|2658397\|32\|CP029108\|CRT	2658397-2658428	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	17977-18008	8	0.75
CP029108_8	8.22\|2658397\|32\|CP029108\|CRT	2658397-2658428	32	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	97497-97528	8	0.75
CP029108_8	8.25\|2658580\|32\|CP029108\|CRT	2658580-2658611	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	148991-149022	8	0.75
CP029108_8	8.25\|2658580\|32\|CP029108\|CRT	2658580-2658611	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530640-530671	8	0.75
CP029108_8	8.26\|2658641\|32\|CP029108\|CRT	2658641-2658672	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	532343-532374	8	0.75
CP029108_5	5.1\|2216982\|42\|CP029108\|CRISPRCasFinder	2216982-2217023	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24786-24827	9	0.786
CP029108_8	8.1\|2658214\|31\|CP029108\|CRISPRCasFinder	2658214-2658244	31	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	86182-86212	9	0.71
CP029108_8	8.2\|2658275\|31\|CP029108\|CRISPRCasFinder	2658275-2658305	31	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	244686-244716	9	0.71
CP029108_8	8.2\|2658275\|31\|CP029108\|CRISPRCasFinder	2658275-2658305	31	GU075905	Prochlorococcus phage P-HM2, complete genome	78536-78566	9	0.71
CP029108_8	8.4\|2658397\|31\|CP029108\|CRISPRCasFinder	2658397-2658427	31	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	405875-405905	9	0.71
CP029108_8	8.4\|2658397\|31\|CP029108\|CRISPRCasFinder	2658397-2658427	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2248363-2248393	9	0.71
CP029108_8	8.8\|2658641\|31\|CP029108\|CRISPRCasFinder	2658641-2658671	31	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35770	9	0.71
CP029108_8	8.10\|2658213\|33\|CP029108\|PILER-CR	2658213-2658245	33	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	86181-86213	9	0.727
CP029108_8	8.13\|2658396\|33\|CP029108\|PILER-CR	2658396-2658428	33	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	17976-18008	9	0.727
CP029108_8	8.22\|2658397\|32\|CP029108\|CRT	2658397-2658428	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	405875-405906	9	0.719
CP029108_8	8.25\|2658580\|32\|CP029108\|CRT	2658580-2658611	32	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14953-14984	9	0.719
CP029108_8	8.25\|2658580\|32\|CP029108\|CRT	2658580-2658611	32	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14983-15014	9	0.719
CP029108_8	8.25\|2658580\|32\|CP029108\|CRT	2658580-2658611	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	3454-3485	9	0.719
CP029108_8	8.26\|2658641\|32\|CP029108\|CRT	2658641-2658672	32	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35771	9	0.719
CP029108_7	7.1\|2635312\|32\|CP029108\|PILER-CR,CRISPRCasFinder,CRT	2635312-2635343	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688
CP029108_8	8.11\|2658274\|33\|CP029108\|PILER-CR	2658274-2658306	33	GU075905	Prochlorococcus phage P-HM2, complete genome	78535-78567	10	0.697
CP029108_8	8.16\|2658579\|33\|CP029108\|PILER-CR	2658579-2658611	33	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14952-14984	10	0.697
CP029108_8	8.16\|2658579\|33\|CP029108\|PILER-CR	2658579-2658611	33	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14982-15014	10	0.697
CP029108_8	8.17\|2658640\|33\|CP029108\|PILER-CR	2658640-2658672	33	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35739-35771	10	0.697
CP029108_8	8.19\|2658214\|32\|CP029108\|CRT	2658214-2658245	32	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	86181-86212	10	0.688
CP029108_8	8.20\|2658275\|32\|CP029108\|CRT	2658275-2658306	32	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	244686-244717	10	0.688
CP029108_8	8.20\|2658275\|32\|CP029108\|CRT	2658275-2658306	32	GU075905	Prochlorococcus phage P-HM2, complete genome	78536-78567	10	0.688
CP029108_8	8.22\|2658397\|32\|CP029108\|CRT	2658397-2658428	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2248362-2248393	10	0.688

1. spacer 4.1|763408|42|CP029108|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

2. spacer 11.1|4412006|40|CP029108|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

3. spacer 4.2|763467|40|CP029108|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

4. spacer 10.1|3756815|38|CP029108|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 2.1|550352|48|CP029108|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

6. spacer 2.1|550352|48|CP029108|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

7. spacer 2.1|550352|48|CP029108|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

8. spacer 2.1|550352|48|CP029108|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

9. spacer 5.1|2216982|42|CP029108|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
acaaatgccggatgcggcgtaaacgccttatctggcctacgc	Protospacer
***.  *.****************.*********.******.

10. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

11. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

12. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

13. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

14. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

15. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

16. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

17. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

18. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

19. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

20. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

21. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

22. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

23. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

24. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

25. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

26. spacer 7.7|2635678|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

27. spacer 8.1|2658214|31|CP029108|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
tccctatcgcaatgccggcagcatccgcaat	Protospacer
*. *.  ****** **** ************

28. spacer 8.1|2658214|31|CP029108|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatc	Protospacer
**** ************ ***** *  ** .

29. spacer 8.1|2658214|31|CP029108|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatc	Protospacer
**** ************ ***** *  ** .

30. spacer 8.4|2658397|31|CP029108|CRISPRCasFinder matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
agcgtcaccgacgcgcagggccgctaccaac	Protospacer
  **************** * *******.

31. spacer 8.7|2658580|31|CP029108|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
ccgaacaggtggcgaagcaggtgatgggcca	Protospacer
******.* **************.. ***

32. spacer 5.1|2216982|42|CP029108|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
attgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
*. *  ******************.*******.*******.

33. spacer 7.6|2635617|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcaacgcgctcagacgttgcgtgagtgaacca	CRISPR spacer
acaacgcggtcggacgttgcgtgattaccccg	Protospacer
 ******* **.************ *.  **.

34. spacer 8.4|2658397|31|CP029108|CRISPRCasFinder matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
gacgtcaccgacgcgcagtcgcgcttcttca	Protospacer
  ***************** ***** *. ..

35. spacer 8.7|2658580|31|CP029108|CRISPRCasFinder matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgt	Protospacer
   ..*.******** ********** ****

36. spacer 8.7|2658580|31|CP029108|CRISPRCasFinder matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgt	Protospacer
   ..*.******** ********** ****

37. spacer 8.7|2658580|31|CP029108|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
ttgcgcagctggcgcagcaggtggctgccga	Protospacer
..* .*.******* ************ **

38. spacer 8.7|2658580|31|CP029108|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgaacggctggcgaagcaggtggctggcgt	CRISPR spacer
gggtacggctggcgaaggaggcggctgcgga	Protospacer
  * ************* ***.*****  *

39. spacer 8.10|2658213|33|CP029108|PILER-CR matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.758

gttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
gtccctatcgcaatgccggcagcatccgcaatc	Protospacer
**. *.  ****** **** ************.

40. spacer 8.16|2658579|33|CP029108|PILER-CR matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.758

gccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
gccgaacaggtggcgaagcaggtgatgggccag	Protospacer
*******.* **************.. ***  .

41. spacer 8.19|2658214|32|CP029108|CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
tccctatcgcaatgccggcagcatccgcaatc	Protospacer
*. *.  ****** **** ************.

42. spacer 8.19|2658214|32|CP029108|CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatca	Protospacer
**** ************ ***** *  ** .

43. spacer 8.19|2658214|32|CP029108|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
ttgcgcgcgcaattccgtgagcagcgccatca	Protospacer
**** ************ ***** *  ** .

44. spacer 8.19|2658214|32|CP029108|CRT matches to NC_008759 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence) position: , mismatch: 8, identity: 0.75

ttgcccgcg-----caattccgggagcatccgcaatt	CRISPR spacer
-----cgtgaaactcatttccgggagcatccgcattt	Protospacer
     **.*     ** ***************** **

45. spacer 8.22|2658397|32|CP029108|CRT matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
agcgtcaccgacgcgcagggccgctaccaact	Protospacer
  **************** * *******.

46. spacer 8.22|2658397|32|CP029108|CRT matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
gacgtcaccgacgcgcagtcgcgcttcttcaa	Protospacer
  ***************** ***** *. ..*

47. spacer 8.25|2658580|32|CP029108|CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
gggtacggctggcgaaggaggcggctgcggaa	Protospacer
  * ************* ***.*****  * *

48. spacer 8.25|2658580|32|CP029108|CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ccgaacaggtggcgaagcaggtgatgggccag	Protospacer
******.* **************.. ***  .

49. spacer 8.26|2658641|32|CP029108|CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
catcatcctcccgcagatgcgctggccgatcc	Protospacer
  *.*.* .******** ******** *****

50. spacer 5.1|2216982|42|CP029108|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
gttgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
.. *  ******************.*******.*******.

51. spacer 8.1|2658214|31|CP029108|CRISPRCasFinder matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 9, identity: 0.71

ttgcccgcgcaattccgggagcatccgcaat	CRISPR spacer
gctaccgcgcaattcgaggagcatccgctgg	Protospacer
 .  *********** .*********** .

52. spacer 8.2|2658275|31|CP029108|CRISPRCasFinder matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

acggacaaaatatatattgatttgcgaatta	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaat	Protospacer
  .*.********* ******** ****

53. spacer 8.2|2658275|31|CP029108|CRISPRCasFinder matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 9, identity: 0.71

acggacaaaatatatattgatttgcgaatta	CRISPR spacer
acggaaaaattatatattgattttacttctg	Protospacer
***** *** *************     .*.

54. spacer 8.4|2658397|31|CP029108|CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
gacgtcactgacgcgcagtcgcgcttcttca	Protospacer
  ******.********** ***** *. ..

55. spacer 8.4|2658397|31|CP029108|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

cccgtcaccgacgcgcagtggcgctaccgtg	CRISPR spacer
gacatcaccgacgcccagtggcgcgacgtcc	Protospacer
  *.********** ********* **  .

56. spacer 8.8|2658641|31|CP029108|CRISPRCasFinder matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

gtttaccgccccgcagaggcgctggcagatc	CRISPR spacer
cgagaccgcctcgccgaggcgctggcagcga	Protospacer
    ******.*** *************

57. spacer 8.10|2658213|33|CP029108|PILER-CR matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 9, identity: 0.727

-gttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
cgcta-ccgcgcaattcgaggagcatccgctggg	Protospacer
 *.*. *********** .*********** .

58. spacer 8.13|2658396|33|CP029108|PILER-CR matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

gcccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
cagcgtcaccgacgcgcagggccgctaccaact	Protospacer
   **************** * *******.

59. spacer 8.22|2658397|32|CP029108|CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
gacgtcactgacgcgcagtcgcgcttcttcaa	Protospacer
  ******.********** ***** *. ..*

60. spacer 8.25|2658580|32|CP029108|CRT matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

61. spacer 8.25|2658580|32|CP029108|CRT matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

62. spacer 8.25|2658580|32|CP029108|CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ttgcgcagctggcgcagcaggtggctgccgag	Protospacer
..* .*.******* ************ ** .

63. spacer 8.26|2658641|32|CP029108|CRT matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
cgagaccgcctcgccgaggcgctggcagcgac	Protospacer
    ******.*** *************   *

64. spacer 7.1|2635312|32|CP029108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

tccacgctgtaacggccatcattaagtttagt	CRISPR spacer
ccgctgctgtgacgcccatcattaagttactc	Protospacer
.*  .*****.*** *************   .

65. spacer 8.11|2658274|33|CP029108|PILER-CR matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.697

gacggacaaaatatatattgatttgcgaattat	CRISPR spacer
gacggaaaaattatatattgattttacttctgg	Protospacer
****** *** *************     .*.

66. spacer 8.16|2658579|33|CP029108|PILER-CR matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 10, identity: 0.697

gccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
cagcggcagctggcgatgcaggtggcttgcgtg	Protospacer
    ..*.******** ********** ****.

67. spacer 8.16|2658579|33|CP029108|PILER-CR matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 10, identity: 0.697

gccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
cagcggcagctggcgatgcaggtggcttgcgtg	Protospacer
    ..*.******** ********** ****.

68. spacer 8.17|2658640|33|CP029108|PILER-CR matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

ggtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
ccgagaccgcctcgccgaggcgctggcagcgac	Protospacer
     ******.*** *************   *

69. spacer 8.19|2658214|32|CP029108|CRT matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 10, identity: 0.688

ttgcccgcgcaattccgggagcatccgcaatt	CRISPR spacer
gctaccgcgcaattcgaggagcatccgctggg	Protospacer
 .  *********** .*********** .

70. spacer 8.20|2658275|32|CP029108|CRT matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaata	Protospacer
  .*.********* ******** ****

71. spacer 8.20|2658275|32|CP029108|CRT matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
acggaaaaattatatattgattttacttctgg	Protospacer
***** *** *************     .*.

72. spacer 8.22|2658397|32|CP029108|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtcaccgacgcgcagtggcgctaccgtga	CRISPR spacer
gacatcaccgacgcccagtggcgcgacgtccc	Protospacer
  *.********** ********* **  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2576 : 27210

Enterobacteria_phage(46.15%)

terminase,lysis,integrase

attL 1922:1936|attR 27284:27298

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1922:1936	attL	NA	NA	NA	NA
AWF12351.1\|2576_3908_+	diguanylate cyclase domain protein	A0A127AWB9	Bacillus_phage	1.4e-20	37.1
AWF09878.1\|5213_5786_-	chaperone of endosialidase family protein	K7PGT9	Enterobacteria_phage	1.2e-96	95.8
AWF12007.1\|5866_6427_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	4.9e-87	98.8
AWF13179.1\|6566_6710_-	hypothetical protein	NA	NA	NA	NA
AWF12426.1\|6875_7049_+	hypothetical protein	A0A0K2FIR8	Escherichia_phage	2.5e-10	94.1
AWF10031.1\|7867_8020_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
AWF13385.1\|8007_8475_-\|lysis	bacteriophage lysis family protein	A0A2D1GLQ7	Escherichia_phage	1.6e-75	96.8
AWF13221.1\|8471_8969_-	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	1.6e-89	97.0
AWF11424.1\|8968_9175_-\|lysis	lysis S family protein	A5LH82	Enterobacteria_phage	3.6e-32	98.5
AWF13766.1\|9371_9542_-	helix-turn-helix domain protein	NA	NA	NA	NA
AWF12794.1\|9967_10102_-	putative araC-type regulatory protein from bacteriophage origin	NA	NA	NA	NA
AWF13339.1\|10453_11413_-	hypothetical protein	NA	NA	NA	NA
AWF10067.1\|11605_12130_+	outer membrane lipoprotein blc	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
AWF09935.1\|12285_12495_-	phage antitermination Q family protein	A0A088CD47	Shigella_phage	8.5e-21	79.7
AWF12418.1\|12606_12729_+	hypothetical protein	NA	NA	NA	NA
AWF12032.1\|12748_12886_-	hypothetical protein	K7PHH3	Enterobacteria_phage	9.2e-08	68.3
AWF12874.1\|12885_13248_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	1.5e-60	97.4
AWF12561.1\|13244_13535_-	hypothetical protein	K7PGZ6	Enterobacteria_phage	4.8e-46	91.7
AWF10131.1\|13697_13997_-	putative phage protein	I6PD71	Cronobacter_phage	2.3e-35	68.7
AWF11390.1\|14444_14558_-	hypothetical protein	NA	NA	NA	NA
AWF11753.1\|14792_15353_-	putative uDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA
AWF12254.1\|15837_16131_-	hypothetical protein	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
AWF13759.1\|16127_16829_-	replication P family protein	K7P6G2	Enterobacteria_phage	3.8e-129	99.6
AWF12518.1\|16825_17755_-	phage replication protein O, N-terminal domain	A0A0M5M7Y1	Salmonella_phage	1.2e-109	63.4
AWF11203.1\|17841_18381_-	hypothetical protein	M9NZI6	Enterobacteria_phage	2.0e-61	66.1
AWF09751.1\|18719_19475_+	helix-turn-helix family protein	Q76H56	Enterobacteria_phage	1.4e-92	75.0
AWF11471.1\|19597_20347_+	hypothetical protein	NA	NA	NA	NA
AWF12131.1\|20343_21171_+	hypothetical protein	NA	NA	NA	NA
AWF13677.1\|21679_21886_+	putative phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
AWF12281.1\|21961_22258_+	host-nuclease inhibitor protein gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
AWF13040.1\|22263_23049_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
AWF13056.1\|23045_23726_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	3.0e-131	98.7
AWF11999.1\|23919_24069_+	hypothetical protein	A0A0P0ZC49	Stx2-converting_phage	1.7e-18	98.0
AWF09929.1\|24145_24361_+	putative ybl17	A0A1I9LJM7	Stx_converting_phage	1.0e-32	100.0
AWF11407.1\|24891_25041_-	putative transmembrane protein	NA	NA	NA	NA
AWF11885.1\|25721_25850_-	hypothetical protein	NA	NA	NA	NA
AWF11275.1\|26139_27210_+\|integrase	integrase	Q9MCR4	Enterobacteria_phage	1.9e-201	99.7
27284:27298	attR	NA	NA	NA	NA

DBSCAN-SWA_2

475107 : 541180

Shigella_phage(30.0%)

integrase,protease,portal,head,lysis,holin

attL 511805:511864|attR 537265:537324

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF11541.1\|475107_477141_-\|holin	transporter, betaine/carnitine/choline transporter family protein	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
AWF12902.1\|477269_477857_+	transcriptional repressor BetI	NA	NA	NA	NA
AWF09690.1\|477879_479343_+	betaine aldehyde dehydrogenase	NA	NA	NA	NA
AWF09628.1\|479356_481027_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.7e-61	31.2
AWF09641.1\|481239_481908_+	G-rich domain on tyrosine kinase family protein	NA	NA	NA	NA
AWF10275.1\|482150_482846_-	hypothetical protein	NA	NA	NA	NA
AWF11755.1\|482838_484266_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
AWF10593.1\|484276_484996_-	cysteine-rich domain protein	NA	NA	NA	NA
AWF11606.1\|485523_486378_-	helix-turn-helix domain protein	NA	NA	NA	NA
AWF12099.1\|486603_487929_+	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain protein	A0A2K5B2C5	Erysipelothrix_phage	2.5e-113	47.6
AWF09615.1\|488037_488274_+	hypothetical protein	NA	NA	NA	NA
AWF11322.1\|488285_488879_+	inner membrane protein YkgB	NA	NA	NA	NA
AWF09500.1\|489685_490321_+	helix-turn-helix domain protein	NA	NA	NA	NA
AWF09555.1\|490277_490436_+	hypothetical protein	NA	NA	NA	NA
AWF09800.1\|490460_494717_-	ytkA-like family protein	NA	NA	NA	NA
AWF11893.1\|495750_495864_-	hypothetical protein	NA	NA	NA	NA
AWF12203.1\|496296_496560_+	ribosomal protein L31	NA	NA	NA	NA
AWF11157.1\|496559_496700_+	ribosomal protein L36	NA	NA	NA	NA
AWF13800.1\|497784_498327_+	HTH-type transcriptional regulator MatA	NA	NA	NA	NA
AWF11473.1\|498401_498989_+	fimbrillin MatB	NA	NA	NA	NA
AWF13255.1\|499046_499715_+	hypothetical protein	NA	NA	NA	NA
AWF10762.1\|499740_502266_+	hypothetical protein	NA	NA	NA	NA
AWF10380.1\|502327_503899_+	hypothetical protein	NA	NA	NA	NA
AWF11994.1\|503921_504578_+	gram-negative pili assembly chaperone, N-terminal domain protein	NA	NA	NA	NA
AWF09434.1\|504921_505035_+	hypothetical protein	NA	NA	NA	NA
AWF12250.1\|505467_506082_-	inner membrane protein YagU	NA	NA	NA	NA
AWF09683.1\|506194_506320_+	hypothetical protein	NA	NA	NA	NA
AWF11264.1\|506499_507189_+	tat (twin-arginine translocation) pathway signal sequence domain protein	NA	NA	NA	NA
AWF10810.1\|507185_508142_+	FAD binding domain in molybdopterin dehydrogenase family protein	NA	NA	NA	NA
AWF12572.1\|508138_510337_+\|head	aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain protein	A0A0P0I429	Acinetobacter_phage	1.1e-38	25.8
AWF11337.1\|510346_511303_+	xdhC Rossmann domain protein	NA	NA	NA	NA
AWF11013.1\|511281_511692_+	lysR substrate binding domain protein	NA	NA	NA	NA
AWF11126.1\|511654_511804_+	hypothetical protein	NA	NA	NA	NA
511805:511864	attL	NA	NA	NA	NA
AWF13815.1\|512374_513154_+	hypothetical protein	NA	NA	NA	NA
AWF09511.1\|514295_515570_-	AAA domain protein	NA	NA	NA	NA
AWF11400.1\|515960_516533_-	chaperone of endosialidase family protein	K7PGT9	Enterobacteria_phage	9.7e-83	84.7
AWF11167.1\|518733_519222_+	hypothetical protein	NA	NA	NA	NA
AWF12327.1\|519609_519783_+	hypothetical protein	Q6H9T0	Enterobacteria_phage	2.8e-25	96.5
AWF12762.1\|519783_520227_-	outer membrane beta-barrel domain protein	A5LH44	Enterobacteria_phage	1.7e-79	95.9
AWF12260.1\|520289_521078_-\|protease	clp protease family protein	A0A291AWT6	Escherichia_phage	1.8e-140	99.2
AWF12775.1\|521091_522600_-\|portal	phage portal protein, lambda family	A0A291AWU2	Escherichia_phage	7.8e-289	99.8
AWF12989.1\|522626_523124_-	lysozyme RrrD	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
AWF10648.1\|523123_523330_-\|lysis	lysis S family protein	A5LH82	Enterobacteria_phage	3.6e-32	100.0
AWF13033.1\|523406_524459_-	DNA methylase family protein	A5LH81	Enterobacteria_phage	3.6e-208	99.7
AWF11041.1\|524608_524803_-	hypothetical protein	Q8SBE3	Shigella_phage	1.8e-28	100.0
AWF12171.1\|525051_526212_+	hypothetical protein	A0A0R6PJX3	Moraxella_phage	6.4e-57	37.0
AWF13693.1\|526872_527913_-	DNA (cytosine-5-)-methyltransferase family protein	A0A0R6PG08	Moraxella_phage	8.7e-98	50.9
AWF11251.1\|528363_529269_-	hypothetical protein	A0A291AWV9	Escherichia_phage	1.7e-177	99.0
AWF12271.1\|529360_529699_-	hypothetical protein	A0A291AWV6	Escherichia_phage	4.9e-50	97.0
AWF13679.1\|529710_530652_-	helix-turn-helix domain protein	U5P0A0	Shigella_phage	1.1e-139	92.7
AWF12681.1\|530996_531554_-	putative dNA-binding transcriptional regulator	S5FXP0	Shigella_phage	1.7e-95	94.6
AWF11065.1\|531546_531786_-	helix-turn-helix domain protein	K7PJQ8	Enterobacteria_phage	1.7e-36	98.7
AWF10443.1\|531904_532597_+	helix-turn-helix family protein	S5FUZ3	Shigella_phage	6.4e-121	96.5
AWF10938.1\|533299_533662_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
AWF12956.1\|533727_534552_+	hypothetical protein	U5P439	Shigella_phage	1.7e-149	99.6
AWF13540.1\|534679_535216_+	hypothetical protein	S5MW55	Escherichia_phage	1.4e-99	98.9
AWF13158.1\|535272_535569_+	putative phage protein	U5P092	Shigella_phage	1.6e-52	98.0
AWF09883.1\|535568_535874_+	hypothetical protein	U5P0J0	Shigella_phage	1.5e-50	99.0
AWF10395.1\|536100_537264_+\|integrase	phage integrase family protein	U5P434	Shigella_phage	2.4e-229	100.0
AWF13059.1\|537468_538722_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
537265:537324	attR	NA	NA	NA	NA
AWF10120.1\|538733_539837_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AWF10941.1\|540124_541180_+	outer membrane pore protein E	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9

DBSCAN-SWA_3

841683 : 858727

Escherichia_phage(38.46%)

tail,integrase

attL 847264:847278|attR 860708:860722

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF09768.1\|841683_845385_-	carboxypeptidase regulatory-like domain protein	A0A2D1UII2	Escherichia_phage	0.0e+00	85.5
AWF12945.1\|845449_846049_-	outer membrane beta-barrel domain protein	H6WZM8	Escherichia_phage	1.6e-107	96.5
AWF13412.1\|846117_849597_-	hypothetical protein	A0A291AWT4	Escherichia_phage	0.0e+00	90.4
847264:847278	attL	NA	NA	NA	NA
AWF10920.1\|849657_850200_-\|tail	bacteriophage lambda tail assembly I family protein	A0A291AWV5	Escherichia_phage	2.9e-76	83.5
AWF11599.1\|850196_850832_-	nlpC/P60 family protein	A0A0K2FIQ5	Escherichia_phage	2.4e-127	98.6
AWF10669.1\|850945_851374_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	3.1e-78	99.3
AWF13627.1\|851571_851934_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
AWF09556.1\|851999_852824_+	hypothetical protein	U5P439	Shigella_phage	6.0e-150	100.0
AWF13667.1\|852951_853488_+	hypothetical protein	U5P0T3	Shigella_phage	4.8e-100	98.9
AWF13912.1\|853499_853841_+	putative phage protein	K7PH61	Enterobacteria_phage	1.4e-60	97.3
AWF12784.1\|853840_854461_+	hypothetical protein	A5LH60	Enterobacteria_phage	9.1e-111	89.8
AWF11823.1\|854788_857395_-	HNH endonuclease family protein	A0A1S6KZY3	Salmonella_phage	1.7e-20	41.1
AWF10007.1\|857503_858727_-\|integrase	phage integrase family protein	A5LH57	Enterobacteria_phage	1.8e-235	98.3
860708:860722	attR	NA	NA	NA	NA

DBSCAN-SWA_4

923018 : 936875

Stx2-converting_phage(37.5%)

transposase,integrase

attL 923461:923474|attR 928378:928391

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF13690.1\|923018_923615_-\|integrase	phage integrase family protein	A0A2L1IV36	Escherichia_phage	3.9e-50	53.4
923461:923474	attL	NA	NA	NA	NA
AWF13798.1\|924092_924695_-\|integrase	phage integrase family protein	A0A2L1IV36	Escherichia_phage	3.1e-55	52.3
AWF09453.1\|926441_926867_+	putative N-acetylneuraminic acid outer membrane channel protein NanC	NA	NA	NA	NA
AWF10861.1\|926886_927993_+	mutarotase, YjhT family protein	NA	NA	NA	NA
AWF11186.1\|928240_929038_+	hypothetical protein	Q08JA2	Stx2-converting_phage	5.0e-77	54.4
928378:928391	attR	NA	NA	NA	NA
AWF10722.1\|929045_929696_-	HNH endonuclease family protein	NA	NA	NA	NA
AWF11086.1\|929747_929870_-	hypothetical protein	NA	NA	NA	NA
AWF13169.1\|930041_930260_+	hypothetical protein	NA	NA	NA	NA
AWF12017.1\|930639_930903_-	hypothetical protein	A0A1S6UA20	Serratia_phage	8.8e-15	50.6
AWF10723.1\|930928_931162_-\|transposase	putative transposase	Q9ZXG3	Shigella_phage	6.8e-35	100.0
AWF09803.1\|931119_931485_-\|transposase	transposase family protein	Q76S41	Shigella_phage	9.6e-60	100.0
AWF11189.1\|931946_932087_+	hemolysin expression modulating family protein	NA	NA	NA	NA
AWF13925.1\|932430_932568_-	putative membrane protein	NA	NA	NA	NA
AWF10350.1\|932802_933372_+	hypothetical protein	NA	NA	NA	NA
AWF10868.1\|933537_933939_+	hypothetical protein	NA	NA	NA	NA
AWF11965.1\|933926_934361_+	hypothetical protein	NA	NA	NA	NA
AWF12797.1\|934539_934668_+	hypothetical protein	NA	NA	NA	NA
AWF11393.1\|935092_935440_+\|transposase	putative transposase	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
AWF13242.1\|935489_936875_+\|transposase	transposase IS66 family protein	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3

DBSCAN-SWA_5

948992 : 955551

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF10664.1\|948992_949949_+	fe(3+) dicitrate transport system permease protein FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
AWF13395.1\|949949_950717_+	ABC transporter family protein	G3M9Y6	Bacillus_virus	6.4e-13	24.8
AWF13088.1\|951274_951418_-	hypothetical protein	NA	NA	NA	NA
AWF12081.1\|951853_952453_-	HTH-like domain protein	S5FNT8	Shigella_phage	1.2e-99	97.2
AWF11088.1\|952583_953735_+	homeo-like domain protein	W5R8L2	Staphylococcus_phage	2.6e-42	36.0
AWF11073.1\|954297_954678_+	hypothetical protein	Q858R9	Enterobacteria_phage	1.1e-37	60.8
AWF10565.1\|954726_955551_-	hypothetical protein	L7TR00	Rhizobium_phage	3.0e-16	35.5

DBSCAN-SWA_6

2666187 : 2679370

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF10980.1\|2666187_2666949_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-59	48.0
AWF11381.1\|2666942_2667569_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
AWF13856.1\|2667708_2668848_+	peptidase M23 family protein	D7RWE0	Brochothrix_phage	1.7e-06	35.6
AWF12419.1\|2668910_2669903_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
AWF13743.1\|2669996_2671361_-	inner membrane permease YgbN	NA	NA	NA	NA
AWF13134.1\|2671449_2672226_-	putative hydroxypyruvate isomerase YgbM	NA	NA	NA	NA
AWF10575.1\|2672230_2672827_-	class II Aldolase and Adducin N-terminal domain protein	A0A077SK32	Escherichia_phage	2.3e-79	74.6
AWF09942.1\|2672865_2674128_-	hypothetical protein	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AWF13298.1\|2674124_2674979_-	NAD binding domain of 6-phosphogluconate dehydrogenase family protein	A0A077SLF7	Escherichia_phage	4.2e-114	77.4
AWF13896.1\|2675264_2675996_+	HTH domain protein	A0A077SK06	Escherichia_phage	2.8e-66	56.2
AWF13565.1\|2676046_2676703_-	serine/threonine-protein phosphatase 2	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
AWF11574.1\|2676808_2679370_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6

DBSCAN-SWA_7

2752251 : 2761585

Shigella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF09713.1\|2752251_2752617_+\|transposase	transposase family protein	Q76S41	Shigella_phage	9.6e-60	100.0
AWF10922.1\|2752574_2753480_+	HTH-like domain protein	Q9ZXG3	Shigella_phage	3.3e-178	99.7
AWF10069.1\|2753450_2754320_-	ankyrin repeats family protein	NA	NA	NA	NA
AWF12508.1\|2755126_2755504_+\|transposase	putative transposase	Q71TF0	Escherichia_phage	3.5e-65	97.6
AWF13101.1\|2755549_2758789_-	type I site-specific deoxyribonuclease, HsdR family protein	A0A220A398	Liberibacter_phage	3.7e-62	28.5
AWF09553.1\|2758847_2760041_-	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	5.4e-19	34.7
AWF09813.1\|2760037_2761585_-	methyltransferase domain protein	A0A2H4PQP4	Staphylococcus_phage	4.2e-48	27.6

DBSCAN-SWA_8

3288397 : 3297839

Enterobacteria_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF10953.1\|3288397_3289324_+	ABC transporter family protein	G3M9Y6	Bacillus_virus	1.7e-23	30.8
AWF13311.1\|3289328_3290060_+	putative osmoprotectant uptake system permease protein YehW	NA	NA	NA	NA
AWF11787.1\|3290207_3290939_-	merR regulatory family protein	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AWF12091.1\|3291160_3292846_+	putative sensor-like histidine kinase YehU	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AWF10215.1\|3292842_3293562_+	response regulator	NA	NA	NA	NA
AWF12195.1\|3293608_3294079_+	hypothetical protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AWF10315.1\|3294119_3294581_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AWF11097.1\|3294705_3295368_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	1.0e-112	94.6
AWF13462.1\|3295377_3296706_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	2.8e-250	96.8
AWF10635.1\|3296702_3297839_-	VWA domain containing CoxE-like family protein	Q9EYF7	Enterobacteria_phage	3.2e-162	97.4

DBSCAN-SWA_9

3382967 : 3424325

Shigella_phage(26.67%)

transposase,integrase

attL 3410246:3410259|attR 3424829:3424842

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF12208.1\|3382967_3383906_+	glycosyltransferase sugar-binding region containing DXD motif family protein	A0A0U3TLF2	Cucumis_melo_alphaendornavirus	2.7e-05	32.7
AWF12301.1\|3383907_3385191_+	polysaccharide biosynthesis family protein	NA	NA	NA	NA
AWF11227.1\|3385347_3386715_+	6-phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.9e-36	28.5
AWF12689.1\|3386905_3388072_+	nucleotide sugar dehydrogenase family protein	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
AWF10352.1\|3388482_3388986_-\|transposase	putative transposase	U5P0U6	Shigella_phage	1.1e-93	98.8
AWF10063.1\|3389485_3389632_+	hypothetical protein	NA	NA	NA	NA
AWF13373.1\|3389911_3390673_+	nucleotidyl transferase family protein	A0A1V0SH58	Hokovirus	4.8e-21	32.5
AWF11810.1\|3390657_3391326_+	nucleotidyl transferase family protein	A0A1V0SH58	Hokovirus	3.3e-26	30.6
AWF10975.1\|3391349_3392726_+	phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein	A0A127AWJ1	Bacillus_phage	1.1e-31	26.6
AWF13058.1\|3392727_3393522_+	ABC-2 type transporter family protein	NA	NA	NA	NA
AWF11907.1\|3393521_3394736_+	ABC transporter family protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.1e-14	22.9
AWF13400.1\|3394735_3396013_+	methionine biosynthesis MetW family protein	NA	NA	NA	NA
AWF12331.1\|3396015_3399657_+	glycosyltransferase Family 4 family protein	A0A218MKE2	uncultured_virus	1.5e-22	29.6
AWF09977.1\|3399720_3400866_+	glycosyl transferases group 1 family protein	NA	NA	NA	NA
AWF11811.1\|3400875_3401991_+	glycosyltransferase Family 4 family protein	NA	NA	NA	NA
AWF09936.1\|3402029_3402638_-	phosphoribosyl-ATP diphosphatase	NA	NA	NA	NA
AWF09685.1\|3402631_3403408_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
AWF10210.1\|3403389_3404127_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
AWF13338.1\|3404126_3404717_-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	NA	NA	NA	NA
AWF12949.1\|3404716_3405784_-	histidine biosynthesis bifunctional protein HisB	NA	NA	NA	NA
AWF11392.1\|3405783_3406854_-	histidinol-phosphate transaminase	NA	NA	NA	NA
AWF13588.1\|3406850_3408155_-	histidinol dehydrogenase	NA	NA	NA	NA
AWF11600.1\|3408160_3409060_-	ATP phosphoribosyltransferase	A0A0F7Q4B0	Cellulophaga_phage	1.8e-11	94.7
AWF12959.1\|3409423_3409552_+	hypothetical protein	NA	NA	NA	NA
AWF11366.1\|3409681_3410506_+	NADH(P)-binding family protein	NA	NA	NA	NA
3410246:3410259	attL	NA	NA	NA	NA
AWF11242.1\|3410551_3411481_+	lysR substrate binding domain protein	NA	NA	NA	NA
AWF11439.1\|3411611_3411749_-	hypothetical protein	NA	NA	NA	NA
AWF11212.1\|3411747_3413106_+	low-affinity putrescine importer PlaP	NA	NA	NA	NA
AWF11989.1\|3413175_3413679_-\|transposase	putative transposase	U5P0U6	Shigella_phage	1.1e-93	98.8
AWF11061.1\|3414140_3414884_+	hypothetical protein	NA	NA	NA	NA
AWF13402.1\|3414897_3415125_+	sirA-like family protein	NA	NA	NA	NA
AWF11268.1\|3415167_3416595_-	exodeoxyribonuclease I	NA	NA	NA	NA
AWF13461.1\|3416803_3417970_+	D-alanyl-D-alanine carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	2.1e-225	98.5
AWF09873.1\|3418088_3418562_+	DNA gyrase inhibitor	NA	NA	NA	NA
AWF10491.1\|3418760_3419819_+	inner membrane protein YeeA	NA	NA	NA	NA
AWF13905.1\|3419783_3419900_-	hypothetical protein	NA	NA	NA	NA
AWF09594.1\|3419990_3420320_+	hypothetical protein	NA	NA	NA	NA
AWF13330.1\|3421056_3421404_-\|transposase	transposase IS116/IS110/IS902 family protein	NA	NA	NA	NA
AWF12976.1\|3421387_3421528_-	hypothetical protein	NA	NA	NA	NA
AWF13116.1\|3422149_3422956_-\|integrase	integrase core domain protein	W5R8L2	Staphylococcus_phage	1.1e-34	36.1
AWF09860.1\|3423257_3423614_-\|transposase	transposase family protein	U5P4I9	Shigella_phage	4.4e-33	92.5
AWF09805.1\|3423821_3424325_-\|transposase	putative transposase	U5P0U6	Shigella_phage	6.3e-94	98.8
3424829:3424842	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3452692 : 3466393

Bacillus_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF09368.1\|3452692_3453364_+	putative transcriptional regulatory protein YedW	W8CYM9	Bacillus_phage	1.4e-32	35.6
AWF13197.1\|3453363_3454722_+	putative sensor-like histidine kinase YedV	Q8QKV7	Ectocarpus_siliculosus_virus	5.1e-05	19.4
AWF10820.1\|3454829_3455681_-	molecular chaperone Hsp31 and glyoxalase 3	NA	NA	NA	NA
AWF11618.1\|3455701_3455845_-	hypothetical protein	NA	NA	NA	NA
AWF09735.1\|3456272_3457022_-	outer membrane porin protein OmpD	Q1MVN1	Enterobacteria_phage	6.8e-68	50.2
AWF10011.1\|3457235_3457601_+\|transposase	transposase family protein	Q76S41	Shigella_phage	6.2e-59	99.2
AWF12796.1\|3457558_3458464_+	HTH-like domain protein	Q9ZXG3	Shigella_phage	3.3e-178	99.7
AWF11221.1\|3459636_3460332_+	hypothetical protein	S4W232	Pandoravirus	4.7e-07	28.2
AWF11096.1\|3460398_3461817_+	DNA (cytosine-5-)-methyltransferase family protein	E5E3X6	Burkholderia_phage	9.4e-103	55.8
AWF13262.1\|3461797_3462268_+	very short patch repair protein	E5E3X5	Burkholderia_phage	2.6e-33	47.6
AWF09522.1\|3462256_3463177_-	hypothetical protein	NA	NA	NA	NA
AWF13345.1\|3463355_3464267_+	inner membrane protein YedI	NA	NA	NA	NA
AWF11890.1\|3464345_3464528_+	hypothetical protein	NA	NA	NA	NA
AWF12130.1\|3464716_3466393_+	diguanylate cyclase domain protein	A0A127AWB9	Bacillus_phage	1.3e-18	35.6

DBSCAN-SWA_11

3532291 : 3560494

Escherichia_phage(22.86%)

terminase,tRNA,integrase

attL 3534247:3534266|attR 3560667:3560686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF10049.1\|3532291_3533035_-\|tRNA	tRNA (cmo5U34)-methyltransferase	F5B419	Synechococcus_phage	3.5e-24	30.0
AWF13827.1\|3533075_3533471_-	inner membrane protein YecN	NA	NA	NA	NA
AWF12112.1\|3533523_3534249_-	hypothetical protein	Q859D1	Escherichia_coli_phage	2.8e-71	98.4
3534247:3534266	attL	NA	NA	NA	NA
AWF11490.1\|3534299_3535559_-\|integrase	phage integrase family protein	A0A286S1S8	Klebsiella_phage	2.7e-226	90.6
AWF11034.1\|3535601_3535793_-	hypothetical protein	A0A286S2A4	Klebsiella_phage	1.4e-25	93.1
AWF10438.1\|3535868_3536003_-	hypothetical protein	NA	NA	NA	NA
AWF12776.1\|3536006_3536225_-	prokaryotic dksA/traR C4-type zinc finger family protein	A0A0K2FI84	Escherichia_phage	7.8e-09	56.6
AWF13028.1\|3536221_3536422_-	hypothetical protein	NA	NA	NA	NA
AWF09619.1\|3536418_3536544_-	hypothetical protein	NA	NA	NA	NA
AWF10703.1\|3536576_3536780_+	putative orf-90	T1S9K2	Salmonella_phage	1.2e-22	78.5
AWF11824.1\|3536776_3536890_+	putative mosaic protein	A0A1U8QWK2	Salmonella_phage	6.9e-09	67.6
AWF11193.1\|3536886_3537270_+	ead domain protein	A0A1V0E5L5	Salmonella_phage	1.0e-11	61.5
AWF10071.1\|3537411_3537555_+	hypothetical protein	NA	NA	NA	NA
AWF09902.1\|3537674_3537860_+	hypothetical protein	NA	NA	NA	NA
AWF13660.1\|3537896_3538079_+	hypothetical protein	NA	NA	NA	NA
AWF11528.1\|3538075_3538339_+	hot	G8C7V1	Escherichia_phage	1.5e-25	73.7
AWF13367.1\|3538445_3538781_+	hypothetical protein	A0A0U2RT94	Escherichia_phage	4.7e-21	43.1
AWF10054.1\|3538831_3539611_-	istB-like ATP binding family protein	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
AWF10093.1\|3539610_3540633_-	helix-turn-helix family protein	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
AWF12205.1\|3540689_3541001_+	hypothetical protein	A0A0U2RT94	Escherichia_phage	8.2e-28	67.0
AWF11744.1\|3541209_3541500_+	hypothetical protein	K7PGZ6	Enterobacteria_phage	3.1e-45	88.5
AWF09891.1\|3541496_3541859_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-52	82.4
AWF11748.1\|3541855_3541996_+	putative gifsy-1 Prophage Protein	NA	NA	NA	NA
AWF12904.1\|3542007_3542682_+	phage antitermination Q family protein	I6PDF8	Cronobacter_phage	3.5e-55	54.6
AWF09445.1\|3542924_3543041_-	hypothetical protein	NA	NA	NA	NA
AWF09870.1\|3543125_3543437_+	putative membrane protein	A0A286N2Q5	Klebsiella_phage	1.2e-42	88.3
AWF12444.1\|3543433_3543973_+	putative Peptidoglycan domain protein	A0A286N2Q6	Klebsiella_phage	5.3e-99	96.6
AWF12414.1\|3543969_3544317_+	putative membrane protein	A0A286N2Q7	Klebsiella_phage	1.2e-35	71.3
AWF11103.1\|3544313_3544589_+	hypothetical protein	G8C7W1	Escherichia_phage	2.1e-06	38.2
AWF09589.1\|3544605_3544737_+	hypothetical protein	G8C7W2	Escherichia_phage	1.6e-12	88.9
AWF10939.1\|3544993_3545143_+	hypothetical protein	NA	NA	NA	NA
AWF10154.1\|3545139_3545406_+	hypothetical protein	NA	NA	NA	NA
AWF13840.1\|3545575_3546004_+	hypothetical protein	NA	NA	NA	NA
AWF10204.1\|3546062_3546839_+\|terminase	putative phage terminase small subunit	A0A077KBY7	Edwardsiella_phage	8.4e-13	66.0
AWF12714.1\|3546789_3548190_+\|terminase	phage terminase, large subunit, PBSX family	A0A077KAW0	Edwardsiella_phage	2.1e-187	69.0
AWF10912.1\|3548412_3549864_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	2.5e-191	68.6
AWF13808.1\|3549934_3550468_+	phage Mu F like family protein	A0A0M4REK0	Salmonella_phage	6.8e-46	55.8
AWF09672.1\|3551193_3552180_+	hypothetical protein	A0A0M4R5A6	Salmonella_phage	1.4e-73	47.4
AWF11578.1\|3552183_3552678_+	putative bacteriophage protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
AWF11968.1\|3552695_3553631_+	hypothetical protein	A0A2H4J191	uncultured_Caudovirales_phage	3.5e-138	77.7
AWF10283.1\|3553670_3553952_+	hypothetical protein	NA	NA	NA	NA
AWF12973.1\|3554007_3554340_+	hypothetical protein	A0A0M5M3S2	Salmonella_phage	1.1e-30	62.9
AWF09812.1\|3554336_3554843_+	hypothetical protein	NA	NA	NA	NA
AWF13448.1\|3554842_3555229_+	putative phage protein	A0A2H4J1A4	uncultured_Caudovirales_phage	2.8e-49	79.0
AWF11560.1\|3555323_3555764_+	putative bacteriophage protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
AWF12767.1\|3555767_3556658_+	hypothetical protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.5e-69	51.4
AWF13726.1\|3556639_3557539_+	hypothetical protein	A0A2H4J9P7	uncultured_Caudovirales_phage	2.7e-31	61.3
AWF13314.1\|3557538_3557709_+	hypothetical protein	NA	NA	NA	NA
AWF11048.1\|3557853_3559875_+	hypothetical protein	A0A0C5Q3X6	Klebsiella_phage	6.9e-107	47.3
AWF13331.1\|3559883_3560063_+	hypothetical protein	NA	NA	NA	NA
AWF11971.1\|3560176_3560494_+	hypothetical protein	K7PGV5	Enterobacterial_phage	5.3e-22	50.0
3560667:3560686	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3842651 : 3856754

Escherichia_phage(22.22%)

integrase

attL 3840355:3840368|attR 3852720:3852733

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3840355:3840368	attL	NA	NA	NA	NA
AWF11693.1\|3842651_3845057_-	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein	A0A077SK27	Escherichia_phage	7.7e-214	49.0
AWF13860.1\|3845276_3845582_-	hypothetical protein	NA	NA	NA	NA
AWF10919.1\|3845776_3846400_+	hypothetical protein	NA	NA	NA	NA
AWF09417.1\|3846402_3846963_-	spermidine N(1)-acetyltransferase	NA	NA	NA	NA
AWF10609.1\|3846997_3847339_-	hypothetical protein	NA	NA	NA	NA
AWF13306.1\|3847473_3847800_+	hypothetical protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AWF12751.1\|3848005_3849220_+	mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein	Q6A202	Oenococcus_phage	1.4e-46	29.0
AWF10217.1\|3849231_3850251_+	zinc-binding dehydrogenase family protein	E3SJ82	Synechococcus_phage	4.3e-17	26.2
AWF13875.1\|3850438_3851719_-\|integrase	phage integrase family protein	B6DZ48	Enterobacteria_phage	6.6e-156	62.3
AWF09726.1\|3851753_3851990_-	hypothetical protein	S4TND0	Salmonella_phage	6.1e-15	50.7
AWF10694.1\|3852077_3854549_-	putative exonuclease VIII	K7PLW7	Enterobacteria_phage	6.1e-57	59.8
3852720:3852733	attR	NA	NA	NA	NA
AWF13445.1\|3854642_3854834_-	hypothetical protein	NA	NA	NA	NA
AWF13165.1\|3854830_3855019_-	dicB family protein	NA	NA	NA	NA
AWF11398.1\|3855162_3855345_+	hypothetical protein	NA	NA	NA	NA
AWF12329.1\|3855325_3856291_+	putative ybl78	U5P0A0	Shigella_phage	9.7e-59	63.9
AWF10324.1\|3856457_3856754_+	hypothetical protein	A0A0U2QQN3	Escherichia_phage	5.2e-40	81.4

DBSCAN-SWA_13

3863671 : 3871063

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF11763.1\|3863671_3864721_+	hypothetical protein	U5P0K4	Shigella_phage	4.2e-108	54.3
AWF12030.1\|3864841_3865108_+	endodeoxyribonuclease RusA family protein	V5URS4	Shigella_phage	7.8e-19	62.2
AWF13399.1\|3865104_3865926_+	antitermination family protein	K7P7B9	Enterobacteria_phage	2.7e-78	59.0
AWF11725.1\|3866440_3866557_+	hypothetical protein	NA	NA	NA	NA
AWF09953.1\|3866818_3868834_+	hypothetical protein	A0A291AWT4	Escherichia_phage	0.0e+00	96.6
AWF10824.1\|3868904_3869300_+	outer membrane beta-barrel domain protein	A5LH44	Enterobacteria_phage	6.1e-60	97.4
AWF10613.1\|3869299_3871063_+	chaperone of endosialidase family protein	K7PGT9	Enterobacteria_phage	1.8e-204	85.2

DBSCAN-SWA_14

4272668 : 4285406

Enterobacteria_phage(28.57%)

transposase,integrase

attL 4270641:4270664|attR 4284109:4284132

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4270641:4270664	attL	NA	NA	NA	NA
AWF13769.1\|4272668_4274459_-	phoH-like family protein	K4I1H4	Acidithiobacillus_phage	6.9e-26	28.6
AWF11513.1\|4275665_4276169_-\|transposase	putative transposase	Q71TF0	Escherichia_phage	2.9e-83	91.9
AWF10634.1\|4276413_4276902_-	phage replication protein O, N-terminal domain	A0A0M5M7Y1	Salmonella_phage	2.6e-36	50.0
AWF12120.1\|4276988_4277528_-	hypothetical protein	M9NZI6	Enterobacteria_phage	7.5e-61	65.6
AWF12828.1\|4277716_4278022_+	putative bacteriophage recombination protein	A0A0N7KZJ3	Stx2-converting_phage	2.3e-43	100.0
AWF13365.1\|4278018_4278699_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	5.1e-131	98.7
AWF11712.1\|4278695_4278854_+	hypothetical protein	M1FJ61	Enterobacteria_phage	6.4e-21	88.5
AWF11151.1\|4278850_4279915_+	DGQHR domain protein	T1SBJ4	Salmonella_phage	1.7e-133	64.8
AWF12225.1\|4280068_4280287_+	prokaryotic dksA/traR C4-type zinc finger family protein	M1FQT7	Enterobacteria_phage	3.2e-34	94.4
AWF10278.1\|4280457_4280574_+	hypothetical protein	M1FPC8	Enterobacteria_phage	1.2e-11	92.1
AWF11230.1\|4281073_4282096_+	helix-turn-helix family protein	A0A2L1IVA1	Escherichia_phage	1.0e-199	99.1
AWF13915.1\|4282095_4282875_+	istB-like ATP binding family protein	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
AWF12754.1\|4282890_4284042_+\|integrase	phage integrase family protein	O21929	Phage_21	8.2e-206	99.7
AWF12618.1\|4284155_4285406_-	isocitrate dehydrogenase, NADP-dependent	Q77Z09	Phage_21	3.8e-23	100.0
4284109:4284132	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4600559 : 4609329

Salmonella_phage(88.89%)

integrase

attL 4600229:4600242|attR 4609371:4609384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4600229:4600242	attL	NA	NA	NA	NA
AWF09881.1\|4600559_4600748_-	putative levan regulatory protein	A0A1S6L006	Salmonella_phage	2.0e-24	95.2
AWF10489.1\|4600906_4603300_-	bacteriophage replication protein A	E5G6L9	Salmonella_phage	0.0e+00	93.7
AWF12671.1\|4603296_4604154_-	DNA adenine methylase family protein	E5G6L8	Salmonella_phage	9.5e-159	95.8
AWF10331.1\|4604150_4604378_-	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	E5G6L7	Salmonella_phage	7.8e-36	98.7
AWF12206.1\|4604377_4604611_-	hypothetical protein	E5G6L6	Salmonella_phage	1.9e-32	97.4
AWF10549.1\|4604678_4605020_-	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
AWF11690.1\|4605042_4605267_-	putative cell division blocking protein	NA	NA	NA	NA
AWF13586.1\|4605441_4605951_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
AWF10781.1\|4605965_4606130_+	hypothetical protein	NA	NA	NA	NA
AWF13017.1\|4606293_4607229_+	bacteriophage CI repressor helix-turn-helix domain protein	A0A1S6KZZ7	Salmonella_phage	1.8e-30	39.4
AWF11226.1\|4607240_4608185_+	hypothetical protein	NA	NA	NA	NA
AWF12062.1\|4608276_4609329_+\|integrase	phage integrase family protein	A0A218M4I3	Erwinia_phage	1.4e-106	57.0
4609371:4609384	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP029103

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6 : 89486

Escherichia_phage(66.67%)

integrase,terminase,tail,transposase

attL 11275:11291|attR 63231:63247

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF09150.1\|6_807_+	phage antirepressor KilA domain protein	Q1MVK4	Enterobacteria_phage	1.6e-147	99.6
AWF09076.1\|836_1682_+	putative replication protein repL	Q1MVK3	Enterobacteria_phage	1.2e-150	97.9
AWF09079.1\|1850_2555_+	hypothetical protein	Q71TB8	Escherichia_phage	1.3e-134	99.6
AWF09111.1\|3565_3820_-	putative upf52.7	Q71TM5	Escherichia_phage	5.9e-40	98.8
AWF09131.1\|3859_4591_+	hypothetical protein	NA	NA	NA	NA
AWF09081.1\|4703_5519_-	putative upf54.2	A0A1B0V835	Salmonella_phage	2.6e-113	99.3
AWF09085.1\|5528_7118_-	putative gp22	Q71TB2	Escherichia_phage	2.4e-301	98.5
AWF09138.1\|7178_8885_-	putative upf57.5	Q1MVJ5	Enterobacteria_phage	6.3e-311	94.2
AWF09102.1\|9110_10112_-	parB	Q38420	Escherichia_phage	1.1e-177	99.4
AWF09112.1\|10128_11325_-	plasmid partition protein A	A0A077SL49	Escherichia_phage	1.6e-225	100.0
11275:11291	attL	NA	NA	NA	NA
AWF09095.1\|11882_12641_-	replication protein RepA	Q71TL8	Escherichia_phage	5.7e-139	100.0
AWF09078.1\|13061_13454_-	putative upfA	A0A077SLJ1	Escherichia_phage	7.6e-71	97.7
AWF09069.1\|13465_13597_-	putative membrane lipoprotein	Q71TL6	Escherichia_phage	6.1e-17	97.7
AWF09143.1\|13631_14054_-	putative ppfA	A0A1B0VCB0	Salmonella_phage	1.1e-46	86.4
AWF09140.1\|14093_14882_-	putative upfB	A0A1B0V830	Salmonella_phage	1.4e-116	96.6
AWF09107.1\|15620_16526_+	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	1.6e-159	99.7
AWF09139.1\|16594_19564_+	DNA adenine methylase family protein	A0A077SL51	Escherichia_phage	0.0e+00	86.2
AWF09106.1\|20493_20610_+	hypothetical protein	A0A1B0VAL9	Salmonella_phage	2.8e-13	94.7
AWF09127.1\|21126_21561_+	tellurite resistance TerB family protein	Q1MVI3	Enterobacteria_phage	8.1e-74	100.0
AWF09075.1\|21560_21725_+	hypothetical protein	Q1MVI2	Enterobacteria_phage	6.9e-18	98.1
AWF09082.1\|21991_22132_-	hypothetical protein	NA	NA	NA	NA
AWF09062.1\|22266_23562_+	replicative DNA helicase	O80281	Escherichia_phage	3.4e-240	99.5
AWF09134.1\|23561_23864_+	hypothetical protein	NA	NA	NA	NA
AWF09071.1\|23860_24835_+	glycosyl transferases group 1 family protein	A0A077SL52	Escherichia_phage	5.5e-187	98.1
AWF09141.1\|24881_25127_-	putative upf76.8	A0A077SK50	Escherichia_phage	1.9e-11	100.0
AWF09074.1\|25506_26523_-	putative upf77.7	A0A077SLQ1	Escherichia_phage	3.5e-192	100.0
AWF09077.1\|26524_27310_-	putative gp24	A0A1B0V7N6	Salmonella_phage	1.4e-143	99.2
AWF09144.1\|27296_28025_-	putative upf79.2	Q71TJ9	Escherichia_phage	4.2e-139	100.0
AWF09097.1\|28028_29246_-	putative gp25	A0A077SL53	Escherichia_phage	4.1e-224	99.5
AWF09132.1\|29255_29633_-	putative 26 protein	Q38620	Escherichia_phage	2.2e-67	100.0
AWF09123.1\|29779_30025_+	putative pmgL	A0A1B0VDU5	Salmonella_phage	1.5e-40	100.0
AWF09119.1\|30027_30606_+	VRR-NUC domain protein	Q71T85	Escherichia_phage	4.4e-107	99.5
AWF09120.1\|30711_30828_+	putative hdmA	Q71TJ4	Escherichia_phage	2.8e-13	100.0
AWF09118.1\|30972_31101_+	putative pmgO	NA	NA	NA	NA
AWF09105.1\|31329_31956_+	putative pmgP	Q71T82	Escherichia_phage	4.0e-122	99.0
AWF09068.1\|31952_32630_+	serine/threonine-protein phosphatase	Q71TJ1	Escherichia_phage	3.3e-130	97.3
AWF09121.1\|32626_33328_+	putative pmgQ	Q71TJ0	Escherichia_phage	1.0e-142	99.6
AWF09094.1\|33629_34892_+	hypothetical protein	A0A1B0V7L1	Salmonella_phage	1.7e-233	99.3
AWF09072.1\|35379_35616_-\|transposase	putative transposase	A0A0U2RK18	Escherichia_phage	3.9e-30	91.0
AWF09064.1\|36214_38071_+	acyltransferase family protein	B5WZU0	Pseudomonas_phage	8.3e-75	38.2
AWF09130.1\|38641_39016_-\|integrase	integrase core domain protein	A0A0P0I4A4	Acinetobacter_phage	4.3e-31	51.6
AWF09063.1\|39497_39797_+	putative sOS mutagenesis and repair protein UmuD	Q1MVE7	Enterobacteria_phage	1.3e-51	100.0
AWF09108.1\|39869_40091_+	antitoxin phd	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
AWF09090.1\|40090_40471_+	toxin doc	Q71T66	Escherichia_phage	1.9e-63	100.0
AWF09098.1\|40517_40655_+	putative pdcA	Q71TH5	Escherichia_phage	1.1e-16	100.0
AWF09083.1\|40682_41726_+	hypothetical protein	Q1MVE3	Enterobacteria_phage	1.8e-207	99.7
AWF09126.1\|41892_42267_+	putative late promoter-activating protein	Q71T63	Escherichia_phage	1.2e-62	100.0
AWF09101.1\|42352_43546_+	helix-turn-helix domain protein	Q5QBP3	Enterobacteria_phage	7.2e-181	88.7
AWF09148.1\|43545_45030_+\|terminase	putative large terminase protein	Q71T61	Escherichia_phage	1.5e-292	100.0
AWF09088.1\|45055_45907_-	repressor protein C1	A0A077SLM8	Escherichia_phage	4.0e-157	99.3
AWF09115.1\|46822_47044_+	putative cre-associated protein	Q5QBN7	Enterobacteria_phage	4.5e-36	100.0
AWF09073.1\|47051_48083_+	recombinase cre	A0A077SLE7	Escherichia_phage	6.4e-194	99.4
AWF09109.1\|48304_48445_+	putative c8	Q5XLQ4	Enterobacteria_phage	3.2e-16	97.8
AWF09129.1\|48817_49252_+	recombination enhancement function protein	Q71TG3	Escherichia_phage	7.9e-77	97.2
AWF09137.1\|49441_50083_+	putative maturation control protein	A0A077SK30	Escherichia_phage	4.2e-111	96.2
AWF09142.1\|50173_51214_+	yaaC-like family protein	NA	NA	NA	NA
AWF09147.1\|51781_51952_-	modulator protein	Q71TG0	Escherichia_phage	1.6e-25	98.2
AWF09103.1\|52026_52401_-	hypothetical protein	A0A077SLF0	Escherichia_phage	2.9e-67	99.2
AWF09133.1\|52500_59157_-	SNF2 family N-terminal domain protein	Q1MVN7	Enterobacteria_phage	0.0e+00	98.5
AWF09096.1\|59344_61054_+	putative proA	Q71TR7	Escherichia_phage	0.0e+00	99.6
AWF09070.1\|61046_62066_+	putative proB	Q71TR6	Escherichia_phage	1.9e-177	95.9
AWF09128.1\|62045_62162_-	putative lydE	Q71TR5	Escherichia_phage	2.5e-14	89.5
AWF09117.1\|62357_62915_-	lysozyme	Q71TF3	Escherichia_phage	4.2e-107	100.0
AWF09065.1\|63260_63572_+	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	1.1e-51	99.0
63231:63247	attR	NA	NA	NA	NA
AWF09067.1\|63575_63689_-	putative membrane protein	NA	NA	NA	NA
AWF09091.1\|63774_64569_+	putative isaA	Q71TF1	Escherichia_phage	8.0e-144	96.6
AWF09110.1\|64598_64916_-	putative odaA	Q1MVN0	Enterobacteria_phage	7.6e-45	88.6
AWF09086.1\|64905_67527_-	putative ddrB	A0A1B0VFX4	Salmonella_phage	0.0e+00	98.4
AWF09066.1\|67525_67648_+	hypothetical protein	NA	NA	NA	NA
AWF09149.1\|67905_68271_-	putative upf26.7	A0A077SK35	Escherichia_phage	6.7e-45	98.3
AWF09100.1\|68267_70187_-	putative darA	A0A077SLK4	Escherichia_phage	0.0e+00	95.6
AWF09087.1\|70188_70791_-	hypothetical protein	Q1MVM6	Enterobacteria_phage	1.6e-99	99.5
AWF09084.1\|70777_71221_-	putative lydB	A0A077SK09	Escherichia_phage	2.0e-80	98.0
AWF09124.1\|71217_71334_-	putative lydA	Q37876	Escherichia_phage	8.0e-13	100.0
AWF09080.1\|72314_72686_-\|tail	caudovirales tail fiber assembly family protein	Q9MCR5	Enterobacteria_phage	1.5e-23	80.3
AWF09104.1\|72724_77425_-\|tail	phage tail fiber repeat family protein	Q71TP5	Escherichia_phage	4.1e-296	57.9
AWF09125.1\|77436_77607_-\|tail	putative tail fiber protein R	Q71TD4	Escherichia_phage	1.5e-23	98.2
AWF09113.1\|77949_78786_-	putative pep42	A0A077SLH5	Escherichia_phage	1.5e-153	99.6
AWF09093.1\|78785_80219_-	putative bplA	Q71TP2	Escherichia_phage	3.4e-270	99.4
AWF09114.1\|80215_80572_-	putative pmgA	Q71TP1	Escherichia_phage	1.0e-61	100.0
AWF09135.1\|80571_84312_-	transglycosylase SLT domain protein	Q1MVL3	Enterobacteria_phage	0.0e+00	87.4
AWF09145.1\|84323_84440_-	hypothetical protein	NA	NA	NA	NA
AWF09122.1\|84393_85275_-	putative phage morphogenetic protein PmgB	A0A1B0VBL3	Salmonella_phage	3.7e-174	99.7
AWF09089.1\|85289_85901_-	putative tubB	Q71TN8	Escherichia_phage	2.9e-109	99.5
AWF09146.1\|85911_86157_-	putative phage morphogenetic protein TubA	Q71TN7	Escherichia_phage	4.5e-37	100.0
AWF09136.1\|86558_87044_-	putative upf50.0	A0A077SL46	Escherichia_phage	1.2e-36	98.8
AWF09099.1\|87101_87506_-	putative outer membrane lipoprotein	A0A077SK39	Escherichia_phage	1.2e-34	99.3
AWF09116.1\|88233_88455_+	putative cell division repressor	A0A077SLM6	Escherichia_phage	1.3e-38	100.0
AWF09092.1\|88451_89486_+	phage antirepressor KilAC domain protein	A0A077SLI1	Escherichia_phage	4.5e-187	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029107

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP029103

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection