CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP029130	Proteus mirabilis strain AR379 plasmid unnamed2	0 crisprs	NA	0	0	0
CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	2 crisprs	NA	0	4	0
CP029132	Proteus mirabilis strain AR379 plasmid unnamed4	0 crisprs	NA	0	0	0
CP029134	Proteus mirabilis strain AR379 plasmid unnamed5	0 crisprs	NA	0	0	0
CP029133	Proteus mirabilis strain AR379 chromosome, complete genome	2 crisprs	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,cas14j	3	6	9
CP029131	Proteus mirabilis strain AR379 plasmid unnamed3	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029133_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029133_2

812918-813130

TypeI-E

I-E

Consensus_repeat	Method
TGTGTTCCCCGTATGCACGGGGATGAACCG	CRT
TGTGTTCCCCGTATGCACGGGGATGAACCG	PILER-CR
GTGTTCCCCGTATGCACGGGGATGAACC	CRISPRCasFinder

3 spacers

cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

The CRISPR arrays of CP029133_2

>merge|CP029133|2|812918-813130|CRT,PILER-CR,CRISPRCasFinder
AGTGTTCCCCGTATGCACGGGGATGAACCTCTTCAACGCTCTTTTCGCGCAGCTCTTTTGCTGTGTTCCCCGTATGCACGGGGATGAACCGGTGTAAACCGCATCTTGTTCAGGGATTTCTTTGTGTTCCCCGTATGCACGGGGATGAACCGTAGTTCAATTACGTTGCTATCAAATAGCTTTTGTGTTCCCCGTATGCACGGGGATGAATCG

>CP029133|2|1|812918-813130|CRT
AGTGTTCCCCGTATGCACGGGGATGAACCT	CTTCAACGCTCTTTTCGCGCAGCTCTTTTGC
TGTGTTCCCCGTATGCACGGGGATGAACCG	GTGTAAACCGCATCTTGTTCAGGGATTTCTT
TGTGTTCCCCGTATGCACGGGGATGAACCG	TAGTTCAATTACGTTGCTATCAAATAGCTTT
TGTGTTCCCCGTATGCACGGGGATGAATCG

>CP029133|2|1|812919-813069|PILER-CR
GTGTTCCCCGTATGCACGGGGATGAACCTC	TTCAACGCTCTTTTCGCGCAGCTCTTTTGCT
GTGTTCCCCGTATGCACGGGGATGAACCGG	TGTAAACCGCATCTTGTTCAGGGATTTCTTT
GTGTTCCCCGTATGCACGGGGATGAACCG

>CP029133|2|2|812919-813129|CRISPRCasFinder
GTGTTCCCCGTATGCACGGGGATGAACC	TCTTCAACGCTCTTTTCGCGCAGCTCTTTTGCT
GTGTTCCCCGTATGCACGGGGATGAACC	GGTGTAAACCGCATCTTGTTCAGGGATTTCTTT
GTGTTCCCCGTATGCACGGGGATGAACC	GTAGTTCAATTACGTTGCTATCAAATAGCTTTT
GTGTTCCCCGTATGCACGGGGATGAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP029133.1\|AWF42523.1\|810760_811204_+\|phosphoenolpyruvate-dependent-sugar-phosphotransferase-system,-EIIA-2-family-protein	unknown	unknown	gnl\|CDD\|238129
CP029133.1\|AWF41414.1\|811233_811521_+\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	unknown	unknown	gnl\|CDD\|99905
CP029133.1\|AWF40827.1\|820777_821650_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029133.1\|AWF41555.1\|819314_820052_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP029133.1\|AWF39807.1\|807167_808073_-\|rmlD-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|224015
CP029133.1\|AWF40193.1\|808137_808752_-\|disulfide-bond-oxidoreductase-YfcG	unknown	unknown	gnl\|CDD\|172475
CP029133.1\|AWF40695.1\|818267_819302_+\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP029133.1\|AWF41660.1\|808948_809491_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185291
CP029133.1\|AWF40385.1\|823810_826159_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family-protein	unknown	unknown	gnl\|CDD\|274418
CP029133.1\|AWF40690.1\|817637_818237_+\|CRISPR-associated-protein-CasB/Cse2	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP029133.1\|AWF42923.1\|804927_806445_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
CP029133.1\|AWF41222.1\|822509_823733_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|183984
CP029133.1\|AWF42761.1\|804405_804897_+\|colicin-V-production-protein	unknown	unknown	gnl\|CDD\|182773
CP029133.1\|AWF42664.1\|809487_810534_-\|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein	unknown	unknown	gnl\|CDD\|224525
CP029133.1\|AWF42220.1\|811531_812788_+\|PTS-system-sugar-specific-permease-component-family-protein	unknown	unknown	gnl\|CDD\|236502
CP029133.1\|AWF41071.1\|820051_820729_+\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
CP029133.1\|AWF42511.1\|813572_816068_+\|CRISPR-associated-endonuclease-Cas3-HD	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP029133.1\|AWF40509.1\|806566_807148_+\|polyprenyl-P-hydroxybenzoate-and-phenylacrylic-acid-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|235677
CP029133.1\|AWF42150.1\|816064_817663_+\|CRISPR-associated-protein-CasA/Cse1	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
CP029133.1\|AWF41510.1\|821652_821949_+\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930

Protein	Function_ID	Function_description	E-value
CP029133.1\|AWF42523.1\|810760_811204_+\|phosphoenolpyruvate-dependent-sugar-phosphotransferase-system,-EIIA-2-family-protein	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.97304e-43
CP029133.1\|AWF41414.1\|811233_811521_+\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.22877e-30
CP029133.1\|AWF40827.1\|820777_821650_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.59749e-138
CP029133.1\|AWF41555.1\|819314_820052_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.81256e-48
CP029133.1\|AWF39807.1\|807167_808073_-\|rmlD-substrate-binding-domain-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	3.01947e-157
CP029133.1\|AWF40193.1\|808137_808752_-\|disulfide-bond-oxidoreductase-YfcG	gnl\|CDD\|172475	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional.	6.69466e-96
CP029133.1\|AWF40695.1\|818267_819302_+\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.8909e-120
CP029133.1\|AWF41660.1\|808948_809491_+\|hypothetical-protein	gnl\|CDD\|185291	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.	9.13373e-128
CP029133.1\|AWF40385.1\|823810_826159_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family-protein	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
CP029133.1\|AWF40690.1\|817637_818237_+\|CRISPR-associated-protein-CasB/Cse2	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.60871e-22
CP029133.1\|AWF42923.1\|804927_806445_+\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
CP029133.1\|AWF41222.1\|822509_823733_+\|alanine-racemase	gnl\|CDD\|183984	PRK13340, PRK13340, alanine racemase; Reviewed.	0
CP029133.1\|AWF42761.1\|804405_804897_+\|colicin-V-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	1.66712e-99
CP029133.1\|AWF42664.1\|809487_810534_-\|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.0595e-83
CP029133.1\|AWF42220.1\|811531_812788_+\|PTS-system-sugar-specific-permease-component-family-protein	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP029133.1\|AWF41071.1\|820051_820729_+\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.31526e-57
CP029133.1\|AWF42511.1\|813572_816068_+\|CRISPR-associated-endonuclease-Cas3-HD	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	7.10227e-125
CP029133.1\|AWF40509.1\|806566_807148_+\|polyprenyl-P-hydroxybenzoate-and-phenylacrylic-acid-decarboxylase-family-protein	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	4.72059e-121
CP029133.1\|AWF42150.1\|816064_817663_+\|CRISPR-associated-protein-CasA/Cse1	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.08313e-138
CP029133.1\|AWF41510.1\|821652_821949_+\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.37501e-60

>CP029133.1|AWF42220.1|811531_812788_+|PTS-system-sugar-specific-permease-component-family-protein
MDFFRFLMSDVLSEPAILVGLIALIGLIAQKKPATECIKGTVKTIMGFVILGAGAGLVINSLGDFSTIFQHAFGIQGVVPNNEAIVSIAQKSFGKEMALIMFFAMLINILIARLTPWKYIFLTGHHTLFMSMMVAVILATAGLEGAVLVAVGSLVVGVSMVFFPAIAHPYMKKITGSDDVALGHFSTISYVVSGFIGSKFGNKAHSTEEMNVPKSLLFLRDTPVAIAFTMGIIFIITCLFAGDTFVREVSGGKNWFMFSLMQSITFAAGVYIILQGVRMVIAEIVPAFKGISDKLVPNAKPALDCPVVFPYAPNAVLVGFLSSFAAGVIGMFILYALDWTVIIPGVVPHFFVGATAGVFGNATGGRRGAILGAFAQGLLITFLPVFLLPVLGDIGIANTTFSDADFGVIGILLGIIVR
>CP029133.1|AWF41414.1|811233_811521_+|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit
MKITVVCGNGLGSSLMMEMSIKSILKDLAVNADVDHVDLGSAKGTPSDIYVGTRDIAEQLNAQAVNGKIVSLDNMIDKVAMKEKLSTALRELGAL
>CP029133.1|AWF42523.1|810760_811204_+|phosphoenolpyruvate-dependent-sugar-phosphotransferase-system,-EIIA-2-family-protein
MLKTLLTPDVVQVIPQVKDWREAIKIACQPLIDKGCIEPRYVDAIYKSHEQIGPYYVLGPGIAMPHARPEEGVNQLSLALTIIEKGVEFGANENDPVKLLIVLAATDNDSHINAIVKLAELFDNQDDIDTLLQAKSKAEVLAVINHY
>CP029133.1|AWF42664.1|809487_810534_-|periplasmic-binding-and-sugar-binding-domain-of-LacI-family-protein
MIKTRKRRNTGRVTLQEVAKHAGVGSMTVSRALRTPELVSDKLREKVNQAVAELGYIPNASAGALASAQSHIIAVLLPSFTDKASADFMQSLQQILSRHHYQILVGCYEYQLHKATDVINMLLQSNPAALVAFGSQLSDVQFLHISNANVPVVSVASQSNEQSAISIDCSYEKAAFDLTHYLIQQGKRCVGYVGALQGQRLHHQQITGWSRALLKNYLNAEQSVTTPDPASMAYGRQALTEILLRQPELDAVICSHESIALGMMFECQRRLIKIPQDLAIACLEGSENSAQIAPSLTSIHFNYHKIGKEAGKHLIALLQHLRDEVDNAMFENTVINYAYRLELGQSTP
>CP029133.1|AWF41660.1|808948_809491_+|hypothetical-protein
MEQENTAVVEWVDIVDEKNEVVAQATRQQMRAENLRHRATYIVVHDGMGKILAQRRTETKDFYPGWLDATAGGVVQQGENALESARREAEEELGIAGVPFAEHGQFYYDDESCRVWGSLFSCVSHGPFALQPEEIEEVCWLTPLEITERCDEFTPDSLKALSLWLTRNNSTRLDTKETTD
>CP029133.1|AWF40193.1|808137_808752_-|disulfide-bond-oxidoreductase-YfcG
MIDLYYANTPNGQKITLFLEEVAMPYTLHHVDIGKGDQFKPEFLAISPNNKIPAIVDNAPADGGEPLSIFESGAILIYLAEKSGKLLSHDLREKMTQLQWLFWQVGGFGPMLGQNHHFTRYAPEKVPYAINRYTKETERLYQVLESRLAQSPYLGGNDYSIADIATYTWARYHDTHHIDLADYPAVEKWLNTISQRPAAKKLFG
>CP029133.1|AWF39807.1|807167_808073_-|rmlD-substrate-binding-domain-protein
MNILITGGTGLIGRALICQLALDKHNITVLSRSPQKVYSHFCNEMACWTHLDDKENLNQFDAVINLAGEPIADKRWTPEQKQTLVNSRCKLTQKLVDLIKASDSPPSVLISGSAVGFYGDQGKNNVTEETPPKDEFTHQLCAKWENIALDAQTPLTRVCLLRTGIVLSTKGGALPKMSPPFKLGLGGKLGNGKQYMPWIHIDDMVNAIVFLLNNNNTQGAFNLTAPHPVQNKAFTTTLAHVLKRPAFMTVPATILKLMMGESATLVLGGQQAFPKKLLDAGFSFRYPQLEGALEDIIRHKK
>CP029133.1|AWF40509.1|806566_807148_+|polyprenyl-P-hydroxybenzoate-and-phenylacrylic-acid-decarboxylase-family-protein
MKKLIVGLTGASGAIYGIRLLEILKSVPTVETHLVISQAARRTISLETDYSLKDIHALADIIYDDRDIGATISSGSFRVNGMVILPCSIKSLSGIVHSYTDTLVTRAADVVLKEGRKLVLCVRETPLHLGHLRLMTQAAELGAIIMPPVPAFYFQPKTIDDIVNQTVNRVLDQFDIDLPDDLFQRWQGDKPAR
>CP029133.1|AWF42923.1|804927_806445_+|amidophosphoribosyltransferase
MCGIVGIAGVNPVNQSIYDALTVLQHRGQDAAGIATIDENNGFRLRKANGLVKDVFETRHMLRLKGTIGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNAHLLRRQLFETARRHINTTSDSEILLNVLAYELDRFDHFPLEPDNIFTAVAAMHKKLRGAYACVALIIGHGLLAFRDPYGIRPLVLGKRTLEDGRSEYMVASESVALDTLGFEFLRDVAPGEAVYITEQGQLFTRQCAENPQLVPCLFEYVYFARPDSFIDKISVYNARLRMGQKLGAKIAKEWEDLQIDVVIPIPETSCDIALEIAHILNKPYRQGFVKNRYVGRTFIMPGQQERRKSVRRKLNANRAEFRDKNVLLIDDSIVRGTTSEQIVELAREAGAKKVYFASAAPEVRFPNVYGIDMPNANELIAHGREVDEIRKLIGADGLIFQDLSDLIAAVQEENPDINQFECSVFDGVYITKDIDQGYLDYLENLRRDDEHKIRDQHEAENLEIYNEG
>CP029133.1|AWF42761.1|804405_804897_+|colicin-V-production-protein
MVWIDYAIIAIIGFSALVSLIRGFVREALSLITWGCGFFVASQFYPYLAVYFTRFEDELVRNGIAIVTLFIATLIVGAVINYVISSLVQRTGLSGTDRVLGICFGALRGVLIVSALLFVLGAFTPMADSADWQRSELIPQFNHIIRWFFDYLQNASSFVSEKM
>CP029133.1|AWF42511.1|813572_816068_+|CRISPR-associated-endonuclease-Cas3-HD
MLSLHDIGKFSSSFQYINPNIIDKLKVPESRFSYDGNNYCHDRLGYYFWRKIKNTIFSSIIISNADYKERKISDGFWIIFETALGHHGKPINKNNIDESIENYIHKDNDKAAIDFTLDILKLFSPKLSVENFYDKGWKERLKQISWLLAGMVTLSDWIGSNRDYFPYYKKKIPLSEYWFLALNRAKKAVLSSGFNRNYQISPFISVEYHFGYKPTPLQQWAEKVTINEHPQLFILEDTTGSGKTEAALTLAHRLMEVDAADGFYFGLPTQATSNTMFLRIINHYKKIFDEKKEVPSIVLAHSASNMNEQFTKIIRDGNERYNISDNTASAQCYQWLSDSRKKALLATIGVGTLDQALLSMLPRRHQSLRLLGLNRKIIIFDEIHSADEFMFEIIEKLLSTHLHQGGSVILLTATLSLKQRKRIIDSWFNAFDQISPEIESKSFPLATHLTCFPKVIKKEYPLKSRNQVSRKVKVEIINKEEQCIDIIISAINNGNCVVWIRNTVNDAIKSYYDIKKRLSKDNNCLLFHSRFNLKDRKIREEQVLKYFGKNSTAQQRKGTVLIATQVFQESLDADADIMISDICPIDDLIQRSGRLHRHTRTKYGDYTSETIDKRRPPILYVHAPLFIETPSSCWLTEQFSSTEAVYRSPGRLWLTLRSLTRLGEINMPKDARQLIESVYSDNAYNEIPQSLIQKENNDIGEKKARVSKAKIQLLKINKGYSEESSEFWIEDHYDISTRYSDIEMVNILLLKKIKDNYVPWIEDSHFSIALSTVKISKKKYADKLVSVPQEVIDTINKQYPQARYLQLWIPDEDQYYQYDHLIGFCERQELS
>CP029133.1|AWF42150.1|816064_817663_+|CRISPR-associated-protein-CasA/Cse1
MNIINQPWLPFRFRDGEIKTLPISAISHPDIIDFSLNRADFKGAAYQFAIGLLQTIFAPEDEDEWEEYFETPPSSKKLQSAFDKVAHAFNIMGDGPLFMQDFSTLEEQKNIPIAQLLIDAPGENGIKQNTDHFIKQGIADVMSLEMAVLALFTLQINAPSGGKGHLVSLRGGGPLTTLVYPAEENSTLWQKLWLNVINREFWEYDEPNFDDGSVFPWLIPLNLKEGKGEKVSPDDVHPLYMYWAMPRRIRLKVENKSVTCQISDMKSNFSVRYYVTKNYGLDYQEGWLHPLTPYYWDPKKPEMFPNSIKGRQGGIHYNLWDRLFLSSNENGQKSATVVSHYLKLYQLLEFTRKHRLLIFGYDMDNMKPRGWYNLEMPIFHVKDEYNNKIINEIKIIQKLTIDCLRSVKEQVKKAWFSSPKDMKGDISFIDLTFWQRSENIFFEVVQNIIVQIQKNDFLTHEQAKKWLNSIRKISISIFDEYALSALGTQKSVSGCIKARNGLIKDLYSNKRIKKFTEDFKITKENGEQYGIL
>CP029133.1|AWF40690.1|817637_818237_+|CRISPR-associated-protein-CasB/Cse2
MENNMGSYKSKNITLYNYPELKINVLRWWESLFLSPNELSKKGILPAPNRYKSELKRCDSITAIMLTEGFRALWLSFPVDLINNATTEDIERWATIVAILVYITQDSEKHFATIAGEKDESKKSCISESRFLQLQSSRTYDEFIRRLRRILIQIKGKSSVLSMCKDIEKWVLEKQRFSSIQTNKQIIIEWAMKYYQAAI
>CP029133.1|AWF40695.1|818267_819302_+|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E
MSQFIQLHILTSYAPSNLNRDDLGRPKTAIMGGFERLRISSQSLKRHWRTSELFNIALSGNIGIRTKKFGLQLYDALIEGGVSEKNAKNWVELIIEQYGKIKKDSIETEQLVHISHLEKSLAFDLINLLIKEQREPTKQELESLKTINTSVDIALFGRMLASAPKYNIEAACQVAHAISVHSTVIEDDYFTAVDDLNNGETDTGSAHIGEAGFAAALFYSYICINKTQLIESLDGNEELANKAIQALTEVAIKVSPTGKQNSFASRAYASYVLAEKGSYQPRSLSVAFLKPIDDEDMENAAINALKFRMENFDKVYGTCAESRYQLNAVQGEGSLSGLLQFVAE
>CP029133.1|AWF41555.1|819314_820052_+|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E
MAQYLVFRLYGPLASWGLPAVGGDRQTGIAPSRSAILGLLSASLGINRKDESKLLQLQQSVLVATKQLVPSMLLRDFHTAQVPSKRKNITHPTRRSELAEKDQNTILSSRDYRCDAIWIIAIKLTGHSQYTLEQLKNALLKPVYILSLGRKSCPLSLPMMPKIVEVEQLKEALDTQFPYITTSDKADSYWFHSDGWVTYFWEGNYQDIKGENIMTLYPWDDPINRQHWQFRQRKMYQMSVKRESE
>CP029133.1|AWF41071.1|820051_820729_+|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E
MYLSRISIDYSADYLHSLLANKLPDGYTIHQLLWRLFTEEKERSFLYRLEIGKNGKPIFYILSSIAPTTKNNFFKIETKPFLPKLVKKMKLAFSLRANPTVCITDKEGKRHRHDVLMHAKKQAQLDGKDYSHDDIHHLMQQAALNWISSDDRLNKWGISLTQLPDIKAYTPERIKKPSGKIMSFSSVDYQGVLTIEEPHLFWQQYQQGFGRAKAFGCGLMLIRNI
>CP029133.1|AWF40827.1|820777_821650_+|CRISPR-associated-endonuclease-Cas1
MIFIGMGRIDVKDGAFVVIDEINGERMLIPVGSLACILLEPGTHISHAAVKLAATVGTLLIWVGEAGVRLYSVGQPGGARSDKLLYQAKLALDNDLRLKVVRKMFELRFGESAPLKRSVDQLRGIEGARVRKQYQMLAKKFKIDWKGRRYDPKDWEAGDIINRCISAATACLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPVAFKVASYKAIAPDREVRIACREAFRKYQTLNKLIPLIEEVLSAGEITPPEPPIDAQSPAIPQAHPFGDEGHREK
>CP029133.1|AWF41510.1|821652_821949_+|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E
MSMIVVVTEAVPPRLRGRLAVWLLEVRAGVYVGNVSARIREMIWQQINEFAEDGNVVMAWGTNTESGFDFQTYGENRREPIDFDGLRLVLFKPYKEDV
>CP029133.1|AWF41222.1|822509_823733_+|alanine-racemase
MSLAIRYLALLPLFVITACQQPVNYNPPATQVAQAQPAIVNNSWIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVQCIGVTNNQELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIHLALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYPEEDANKVREDLARFKQQSQQVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTIASTDYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSNAGHALIAGQRVPVLGKTSMNTVMVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDISGALFTEMSILWGATNQRVLVD
>CP029133.1|AWF40385.1|823810_826159_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family-protein
MALYFTVLGGYLVSLAGSPFYLFTGVMLLIIAACFLSRKKSTLLLFNFLFLITIVWSIWESGFDFWALAPRLDIIFILGLLLIPFTLNNNVYTCRTNKIGLFTLLATTLIIILGSSLTDPHAINGQFTQQQPTNSISPIGVNDNDWPAYGRTQAGIRYSPLTQINSDNVDKLVEKWTFHTGDEKRANDAVEITNEVTPIKIEDNLFLCTPHQYLISLDPATGKEKWRFDSKLQYNKSFQHMTCRGVAYYNQNNSAEFAKSLDVRQPSISDECPEKVFLPVNDGRLIAVNAQTGNACRDFGQNGEINLLASMPYAYLGGYNPTSPPIVTGNTIIIGGSVTDNLSTQEPSGVIRGYDVNSGKLIWVFDTGAEDPNAMPGKETQFVHNSPNAWAPLAYDAQTDVVYIPTGVGTPDIWGGDRHPLKERYANSVLALEGSTGELLWHFQTTHHDLWDMDVPSQPSLVDIKTDKNETIPAIYIVTKTGNVFVLDRRDGTPIVPVTEKPVPTSVKYGPQTQGEHYSPTQPFSALNLAPKNKLQGSDMWGGTMADQLLCRIAFHQLNYEGIYTPPSENGTLVFPGNLGIFEWGGISVNQDRQVAVMNFITLPFISKLYLKDPQDSQAIDAGHGEQGLQPMTGTPYSVDIHPFLSPLGLPCKQPPWGLVAGVDLTKNELVWQQRFGTIRDSLPNLVELPPLKIGVPGLGGAISTAGNVMFVAASQDNYIRAFNVTNGKMLWEAQLPAGGQATPMTYSIGGKQYVVIMAGGHGSFGTKMGDSLVAYGLPDNL

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Crispr_ID: CP029133_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029133_3

822008-822341

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGTGTATACGGGGATGAACCG	PILER-CR
GTGTTCCCCGTGTATACGGGGATGAACCG	CRISPRCasFinder
GTGTTCCCCGTGTATACGGGGATGAACCG	CRT

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP029133_3

>merge|CP029133|3|822008-822341|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGTGTATACGGGGATGAACCGAATATAGAAGAGCAAGAAAAAATAGTTAAAAAGTGTTCCCCGTGTATACGGGGATGAACCGGCCATTAGTGGCATTTCAGATAATGAACTCCCGTGTTCCCCGTGTATACGGGGATGAACCGCCGTAAGTGACCAAAGTAACGTAGTGATACGTGTGTTCCCCGTGTATACGGGGATGAACCGGACCTCTTAACGCTACTTGGCCTTAATCATGAGTGTTCCCCGTGTATACGGGGATGAACCGTGACTTTAATTCCGTTTTCTTTTGCTTCATTAGTGTTCCCCGTGTATACGGGGATAAATTA

>CP029133|3|2|822008-822280|PILER-CR
GTGTTCCCCGTGTATACGGGGATGAACCG	AATATAGAAGAGCAAGAAAAAATAGTTAAAAA
GTGTTCCCCGTGTATACGGGGATGAACCG	GCCATTAGTGGCATTTCAGATAATGAACTCCC
GTGTTCCCCGTGTATACGGGGATGAACCG	CCGTAAGTGACCAAAGTAACGTAGTGATACGT
GTGTTCCCCGTGTATACGGGGATGAACCG	GACCTCTTAACGCTACTTGGCCTTAATCATGA
GTGTTCCCCGTGTATACGGGGATGAACCG

>CP029133|3|3|822008-822341|CRISPRCasFinder
GTGTTCCCCGTGTATACGGGGATGAACCG	AATATAGAAGAGCAAGAAAAAATAGTTAAAAA
GTGTTCCCCGTGTATACGGGGATGAACCG	GCCATTAGTGGCATTTCAGATAATGAACTCCC
GTGTTCCCCGTGTATACGGGGATGAACCG	CCGTAAGTGACCAAAGTAACGTAGTGATACGT
GTGTTCCCCGTGTATACGGGGATGAACCG	GACCTCTTAACGCTACTTGGCCTTAATCATGA
GTGTTCCCCGTGTATACGGGGATGAACCG	TGACTTTAATTCCGTTTTCTTTTGCTTCATTA
GTGTTCCCCGTGTATACGGGGATAAATTA

>CP029133|3|2|822008-822341|CRT
GTGTTCCCCGTGTATACGGGGATGAACCG	AATATAGAAGAGCAAGAAAAAATAGTTAAAAA
GTGTTCCCCGTGTATACGGGGATGAACCG	GCCATTAGTGGCATTTCAGATAATGAACTCCC
GTGTTCCCCGTGTATACGGGGATGAACCG	CCGTAAGTGACCAAAGTAACGTAGTGATACGT
GTGTTCCCCGTGTATACGGGGATGAACCG	GACCTCTTAACGCTACTTGGCCTTAATCATGA
GTGTTCCCCGTGTATACGGGGATGAACCG	TGACTTTAATTCCGTTTTCTTTTGCTTCATTA
GTGTTCCCCGTGTATACGGGGATAAATTA

Protein	Signature genes	Signature genes Name	Protein_function
CP029133.1\|AWF40440.1\|830229_831432_-\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
CP029133.1\|AWF41414.1\|811233_811521_+\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	unknown	unknown	gnl\|CDD\|99905
CP029133.1\|AWF41078.1\|832948_833611_+\|sugar-phosphatase-YfbT	unknown	unknown	gnl\|CDD\|183215
CP029133.1\|AWF39529.1\|828007_830074_-\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
CP029133.1\|AWF41555.1\|819314_820052_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187886
CP029133.1\|AWF40695.1\|818267_819302_+\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP029133.1\|AWF39759.1\|831577_831694_-\|hypothetical-protein	unknown	unknown	unknown
CP029133.1\|AWF42876.1\|832419_832914_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180087
CP029133.1\|AWF40690.1\|817637_818237_+\|CRISPR-associated-protein-CasB/Cse2	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP029133.1\|AWF41881.1\|833795_835550_+\|dctM-like-transporters-family-protein	unknown	unknown	gnl\|CDD\|223547
CP029133.1\|AWF40827.1\|820777_821650_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029133.1\|AWF40385.1\|823810_826159_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family-protein	unknown	unknown	gnl\|CDD\|274418
CP029133.1\|AWF41510.1\|821652_821949_+\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
CP029133.1\|AWF42150.1\|816064_817663_+\|CRISPR-associated-protein-CasA/Cse1	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
CP029133.1\|AWF40781.1\|835611_836193_-\|5'-nucleotidase-YfbR	unknown	unknown	gnl\|CDD\|235165
CP029133.1\|AWF42220.1\|811531_812788_+\|PTS-system-sugar-specific-permease-component-family-protein	unknown	unknown	gnl\|CDD\|236502
CP029133.1\|AWF41071.1\|820051_820729_+\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|215025
CP029133.1\|AWF42511.1\|813572_816068_+\|CRISPR-associated-endonuclease-Cas3-HD	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP029133.1\|AWF42312.1\|831823_832279_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179338
CP029133.1\|AWF41222.1\|822509_823733_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|183984

Protein	Function_ID	Function_description	E-value
CP029133.1\|AWF40440.1\|830229_831432_-\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
CP029133.1\|AWF41414.1\|811233_811521_+\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.22877e-30
CP029133.1\|AWF41078.1\|832948_833611_+\|sugar-phosphatase-YfbT	gnl\|CDD\|183215	PRK11587, PRK11587, putative phosphatase; Provisional.	1.05353e-141
CP029133.1\|AWF39529.1\|828007_830074_-\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
CP029133.1\|AWF41555.1\|819314_820052_+\|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.81256e-48
CP029133.1\|AWF40695.1\|818267_819302_+\|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.8909e-120
CP029133.1\|AWF42876.1\|832419_832914_+\|hypothetical-protein	gnl\|CDD\|180087	PRK05445, PRK05445, YfbU family protein.	1.95663e-106
CP029133.1\|AWF40690.1\|817637_818237_+\|CRISPR-associated-protein-CasB/Cse2	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.60871e-22
CP029133.1\|AWF41881.1\|833795_835550_+\|dctM-like-transporters-family-protein	gnl\|CDD\|223547	COG0471, CitT, Di- and tricarboxylate transporters [Inorganic ion transport and metabolism].	6.4456e-63
CP029133.1\|AWF40827.1\|820777_821650_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.59749e-138
CP029133.1\|AWF40385.1\|823810_826159_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family-protein	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
CP029133.1\|AWF41510.1\|821652_821949_+\|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.37501e-60
CP029133.1\|AWF42150.1\|816064_817663_+\|CRISPR-associated-protein-CasA/Cse1	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.08313e-138
CP029133.1\|AWF40781.1\|835611_836193_-\|5'-nucleotidase-YfbR	gnl\|CDD\|235165	PRK03826, PRK03826, 5'-nucleotidase; Provisional.	1.47562e-135
CP029133.1\|AWF42220.1\|811531_812788_+\|PTS-system-sugar-specific-permease-component-family-protein	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP029133.1\|AWF41071.1\|820051_820729_+\|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.31526e-57
CP029133.1\|AWF42511.1\|813572_816068_+\|CRISPR-associated-endonuclease-Cas3-HD	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	7.10227e-125
CP029133.1\|AWF42312.1\|831823_832279_+\|hypothetical-protein	gnl\|CDD\|179338	PRK01816, PRK01816, hypothetical protein; Provisional.	7.72253e-90
CP029133.1\|AWF41222.1\|822509_823733_+\|alanine-racemase	gnl\|CDD\|183984	PRK13340, PRK13340, alanine racemase; Reviewed.	0

>CP029133.1|AWF41510.1|821652_821949_+|CRISPR-associated-endoribonuclease-Cas2,-subtype-I-E
MSMIVVVTEAVPPRLRGRLAVWLLEVRAGVYVGNVSARIREMIWQQINEFAEDGNVVMAWGTNTESGFDFQTYGENRREPIDFDGLRLVLFKPYKEDV
>CP029133.1|AWF40827.1|820777_821650_+|CRISPR-associated-endonuclease-Cas1
MIFIGMGRIDVKDGAFVVIDEINGERMLIPVGSLACILLEPGTHISHAAVKLAATVGTLLIWVGEAGVRLYSVGQPGGARSDKLLYQAKLALDNDLRLKVVRKMFELRFGESAPLKRSVDQLRGIEGARVRKQYQMLAKKFKIDWKGRRYDPKDWEAGDIINRCISAATACLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPVAFKVASYKAIAPDREVRIACREAFRKYQTLNKLIPLIEEVLSAGEITPPEPPIDAQSPAIPQAHPFGDEGHREK
>CP029133.1|AWF41071.1|820051_820729_+|CRISPR-associated-protein-Cas6/Cse3/CasE,-subtype-I-E
MYLSRISIDYSADYLHSLLANKLPDGYTIHQLLWRLFTEEKERSFLYRLEIGKNGKPIFYILSSIAPTTKNNFFKIETKPFLPKLVKKMKLAFSLRANPTVCITDKEGKRHRHDVLMHAKKQAQLDGKDYSHDDIHHLMQQAALNWISSDDRLNKWGISLTQLPDIKAYTPERIKKPSGKIMSFSSVDYQGVLTIEEPHLFWQQYQQGFGRAKAFGCGLMLIRNI
>CP029133.1|AWF41555.1|819314_820052_+|CRISPR-associated-protein-Cas5/CasD,-subtype-I-E
MAQYLVFRLYGPLASWGLPAVGGDRQTGIAPSRSAILGLLSASLGINRKDESKLLQLQQSVLVATKQLVPSMLLRDFHTAQVPSKRKNITHPTRRSELAEKDQNTILSSRDYRCDAIWIIAIKLTGHSQYTLEQLKNALLKPVYILSLGRKSCPLSLPMMPKIVEVEQLKEALDTQFPYITTSDKADSYWFHSDGWVTYFWEGNYQDIKGENIMTLYPWDDPINRQHWQFRQRKMYQMSVKRESE
>CP029133.1|AWF40695.1|818267_819302_+|CRISPR-associated-protein-Cas7/Cse4/CasC,-subtype-I-E
MSQFIQLHILTSYAPSNLNRDDLGRPKTAIMGGFERLRISSQSLKRHWRTSELFNIALSGNIGIRTKKFGLQLYDALIEGGVSEKNAKNWVELIIEQYGKIKKDSIETEQLVHISHLEKSLAFDLINLLIKEQREPTKQELESLKTINTSVDIALFGRMLASAPKYNIEAACQVAHAISVHSTVIEDDYFTAVDDLNNGETDTGSAHIGEAGFAAALFYSYICINKTQLIESLDGNEELANKAIQALTEVAIKVSPTGKQNSFASRAYASYVLAEKGSYQPRSLSVAFLKPIDDEDMENAAINALKFRMENFDKVYGTCAESRYQLNAVQGEGSLSGLLQFVAE
>CP029133.1|AWF40690.1|817637_818237_+|CRISPR-associated-protein-CasB/Cse2
MENNMGSYKSKNITLYNYPELKINVLRWWESLFLSPNELSKKGILPAPNRYKSELKRCDSITAIMLTEGFRALWLSFPVDLINNATTEDIERWATIVAILVYITQDSEKHFATIAGEKDESKKSCISESRFLQLQSSRTYDEFIRRLRRILIQIKGKSSVLSMCKDIEKWVLEKQRFSSIQTNKQIIIEWAMKYYQAAI
>CP029133.1|AWF42150.1|816064_817663_+|CRISPR-associated-protein-CasA/Cse1
MNIINQPWLPFRFRDGEIKTLPISAISHPDIIDFSLNRADFKGAAYQFAIGLLQTIFAPEDEDEWEEYFETPPSSKKLQSAFDKVAHAFNIMGDGPLFMQDFSTLEEQKNIPIAQLLIDAPGENGIKQNTDHFIKQGIADVMSLEMAVLALFTLQINAPSGGKGHLVSLRGGGPLTTLVYPAEENSTLWQKLWLNVINREFWEYDEPNFDDGSVFPWLIPLNLKEGKGEKVSPDDVHPLYMYWAMPRRIRLKVENKSVTCQISDMKSNFSVRYYVTKNYGLDYQEGWLHPLTPYYWDPKKPEMFPNSIKGRQGGIHYNLWDRLFLSSNENGQKSATVVSHYLKLYQLLEFTRKHRLLIFGYDMDNMKPRGWYNLEMPIFHVKDEYNNKIINEIKIIQKLTIDCLRSVKEQVKKAWFSSPKDMKGDISFIDLTFWQRSENIFFEVVQNIIVQIQKNDFLTHEQAKKWLNSIRKISISIFDEYALSALGTQKSVSGCIKARNGLIKDLYSNKRIKKFTEDFKITKENGEQYGIL
>CP029133.1|AWF42511.1|813572_816068_+|CRISPR-associated-endonuclease-Cas3-HD
MLSLHDIGKFSSSFQYINPNIIDKLKVPESRFSYDGNNYCHDRLGYYFWRKIKNTIFSSIIISNADYKERKISDGFWIIFETALGHHGKPINKNNIDESIENYIHKDNDKAAIDFTLDILKLFSPKLSVENFYDKGWKERLKQISWLLAGMVTLSDWIGSNRDYFPYYKKKIPLSEYWFLALNRAKKAVLSSGFNRNYQISPFISVEYHFGYKPTPLQQWAEKVTINEHPQLFILEDTTGSGKTEAALTLAHRLMEVDAADGFYFGLPTQATSNTMFLRIINHYKKIFDEKKEVPSIVLAHSASNMNEQFTKIIRDGNERYNISDNTASAQCYQWLSDSRKKALLATIGVGTLDQALLSMLPRRHQSLRLLGLNRKIIIFDEIHSADEFMFEIIEKLLSTHLHQGGSVILLTATLSLKQRKRIIDSWFNAFDQISPEIESKSFPLATHLTCFPKVIKKEYPLKSRNQVSRKVKVEIINKEEQCIDIIISAINNGNCVVWIRNTVNDAIKSYYDIKKRLSKDNNCLLFHSRFNLKDRKIREEQVLKYFGKNSTAQQRKGTVLIATQVFQESLDADADIMISDICPIDDLIQRSGRLHRHTRTKYGDYTSETIDKRRPPILYVHAPLFIETPSSCWLTEQFSSTEAVYRSPGRLWLTLRSLTRLGEINMPKDARQLIESVYSDNAYNEIPQSLIQKENNDIGEKKARVSKAKIQLLKINKGYSEESSEFWIEDHYDISTRYSDIEMVNILLLKKIKDNYVPWIEDSHFSIALSTVKISKKKYADKLVSVPQEVIDTINKQYPQARYLQLWIPDEDQYYQYDHLIGFCERQELS
>CP029133.1|AWF42220.1|811531_812788_+|PTS-system-sugar-specific-permease-component-family-protein
MDFFRFLMSDVLSEPAILVGLIALIGLIAQKKPATECIKGTVKTIMGFVILGAGAGLVINSLGDFSTIFQHAFGIQGVVPNNEAIVSIAQKSFGKEMALIMFFAMLINILIARLTPWKYIFLTGHHTLFMSMMVAVILATAGLEGAVLVAVGSLVVGVSMVFFPAIAHPYMKKITGSDDVALGHFSTISYVVSGFIGSKFGNKAHSTEEMNVPKSLLFLRDTPVAIAFTMGIIFIITCLFAGDTFVREVSGGKNWFMFSLMQSITFAAGVYIILQGVRMVIAEIVPAFKGISDKLVPNAKPALDCPVVFPYAPNAVLVGFLSSFAAGVIGMFILYALDWTVIIPGVVPHFFVGATAGVFGNATGGRRGAILGAFAQGLLITFLPVFLLPVLGDIGIANTTFSDADFGVIGILLGIIVR
>CP029133.1|AWF41414.1|811233_811521_+|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit
MKITVVCGNGLGSSLMMEMSIKSILKDLAVNADVDHVDLGSAKGTPSDIYVGTRDIAEQLNAQAVNGKIVSLDNMIDKVAMKEKLSTALRELGAL
>CP029133.1|AWF41222.1|822509_823733_+|alanine-racemase
MSLAIRYLALLPLFVITACQQPVNYNPPATQVAQAQPAIVNNSWIEISRSALDFNVKKVQSLLGKQSSLCAVLKGDAYGHDLSLVAPIMIENNVQCIGVTNNQELKEVRDLGFKGRLMRVRNATEQEMAQATNYNVEELIGDLDMAKRLDAIAKQQNKVIPIHLALNSGGMSRNGLEVDNKSGLEKAKQISQLANLKVVGIMSHYPEEDANKVREDLARFKQQSQQVLEVMGLERNNVTLHMANTFATITVPESWLDMVRVGGIFYGDTIASTDYKRVMTFKSNIASINYYPKGNTVGYDRTYTLKRDSVLANIPVGYADGYRRVFSNAGHALIAGQRVPVLGKTSMNTVMVDITSLNNIKPGDEVVFFGKQGNSEITAEEIEDISGALFTEMSILWGATNQRVLVD
>CP029133.1|AWF40385.1|823810_826159_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family-protein
MALYFTVLGGYLVSLAGSPFYLFTGVMLLIIAACFLSRKKSTLLLFNFLFLITIVWSIWESGFDFWALAPRLDIIFILGLLLIPFTLNNNVYTCRTNKIGLFTLLATTLIIILGSSLTDPHAINGQFTQQQPTNSISPIGVNDNDWPAYGRTQAGIRYSPLTQINSDNVDKLVEKWTFHTGDEKRANDAVEITNEVTPIKIEDNLFLCTPHQYLISLDPATGKEKWRFDSKLQYNKSFQHMTCRGVAYYNQNNSAEFAKSLDVRQPSISDECPEKVFLPVNDGRLIAVNAQTGNACRDFGQNGEINLLASMPYAYLGGYNPTSPPIVTGNTIIIGGSVTDNLSTQEPSGVIRGYDVNSGKLIWVFDTGAEDPNAMPGKETQFVHNSPNAWAPLAYDAQTDVVYIPTGVGTPDIWGGDRHPLKERYANSVLALEGSTGELLWHFQTTHHDLWDMDVPSQPSLVDIKTDKNETIPAIYIVTKTGNVFVLDRRDGTPIVPVTEKPVPTSVKYGPQTQGEHYSPTQPFSALNLAPKNKLQGSDMWGGTMADQLLCRIAFHQLNYEGIYTPPSENGTLVFPGNLGIFEWGGISVNQDRQVAVMNFITLPFISKLYLKDPQDSQAIDAGHGEQGLQPMTGTPYSVDIHPFLSPLGLPCKQPPWGLVAGVDLTKNELVWQQRFGTIRDSLPNLVELPPLKIGVPGLGGAISTAGNVMFVAASQDNYIRAFNVTNGKMLWEAQLPAGGQATPMTYSIGGKQYVVIMAGGHGSFGTKMGDSLVAYGLPDNL
>CP029133.1|AWF39529.1|828007_830074_-|phosphate-acetyltransferase
MEQKGVRLSVFKPIAQPRVKGALDQTTAIIRSHSTIQSAEPLNMDYVESLLSSNKKDVLMEEIVARYHENTADAEVVLIEGLVPMRKHPFAQSLNYEIAKTLGAEIVFVTALGNNTAEQLKERIEFARAEFGGVKNQNITGVIVNKLNAPVDDQGRTRPDLSEIFDDSSKAIISNVDLNTIEKNSPLPLLGCIPWNFDLIATRATDMAKHLNATIINKGDIETRRIKSVTFCARSIPHMLEHFRPGSLLVTSADRPDVLVSACLAAMNGVEIGAILLTGGYQIDAPIKQLCERAFETGLPIFMVNSNTWQTSLNLQSFSLEVPADDHERIEKIQNYVAQHINNQWIDSLTANSERPNRLSPPAFRYQLTELARKAKKRIVLPEGDEPRTVKAASICAERGIATCVLLGDPEEIRRVAAAQGVELGTGIELINPKEVREIYVPRLVELRKNKGMTEVVAREQLEDNVVLGTLMLEKGVVDGLVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQLAEIAIQSADSAKAFGIDPRVAMISYSTGNSGAGSDVEKVREATRLAQEKRPDLIIDGPLQYDAAVMADVAKSKAPNSPVAGKATVFIFPDLNTGNTTYKAVQRSADLVSIGPMLQGMRKPVNDLSRGALVDDIVYTVALTAIQASQQENA
>CP029133.1|AWF40440.1|830229_831432_-|acetate-kinase
MSSKLVLVLNCGSSSLKFAIINPENGEEFLSGLAECFNLPEARLKWKMDGQKHEAALGAGAAHSEALNFIVNTILAEKPELSQQIAAIGHRIVHGGEKFTKSVVITDEVIKGIEAAIPFAPLHNPAHLIGIEEARKAFPHLINKMVAVFDTAFHQTMPEEAYLYALPYSLYKDHSIRRYGAHGTSHFFVSREAAKMLNKPVDELNVITCHLGNGGSVSAIVNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIVFHLHDTLGMSVEDINKLLTKESGLLGLTEVTSDCRYVEDNYETKADAKRAMDVYCHRLAKYIGSYCALMEGRLDAIIFTGGIGENAAMVRELSLKKLALLGFEVDHQRNLDARFGKSGTITTDNSRLAVVIPTNEELVIAQDASRLTA
>CP029133.1|AWF39759.1|831577_831694_-|hypothetical-protein
MAIKRYILFAGVIFNPFRRFSGKNFGVNKNRPIDDWQL
>CP029133.1|AWF42312.1|831823_832279_+|hypothetical-protein
MNEPTVTPPGFFKKLRLGNEYLKTWPVEKQLAPVFPENRMIKATRFGIRYMPPIAIFTLTWQIALGGDLGPAITTALFACSLPMQGLWWLGKRAATPLPAVLLNWFYEIREKFEQAGIALAPVEKTPTYLSLAHLLKRAFKQLDRSFLDDV
>CP029133.1|AWF42876.1|832419_832914_+|hypothetical-protein
MEMTHAQRLILSNQYKMMTMMDPDNAERYRRYQTIIERGYGLQLRELDRDFDEMSEETCRTIINIMEMYHALQVSRENLKSPEMPDARRVAFMGFDAATESRYLSYVRFMVNTEGRYTHFDSGSHGFNSQTPMWEKYQRMLAVWLACPRQYHLSSVEIQQILNA
>CP029133.1|AWF41078.1|832948_833611_+|sugar-phosphatase-YfbT
MTITCKGFLFDLDGTLVDSLPVVEYCWALFGERVGVSTQEINNYIHGKPAIESIRHFMPNATQAQIEETFRWLEKLEATQTEGLAPLPGAIELINRLNDLAIPWAIVTSGTVPIASTRQSVTGIPEPKHWVTAECITQGKPNPEPYLLGAKKLGLAPEECVVFEDAAAGIYAGLDAGCQVIAVHAPISLPRRNEIDLIIDSLNDLQIDKENQQVVIKHKC
>CP029133.1|AWF41881.1|833795_835550_+|dctM-like-transporters-family-protein
MDVVALLVIVAFVLSGTLSLNEATVGFSDPNVLLIAALFVIGEGLVRTGVAYQMGDWLVRVAGSSEVKMLVLLMICVASLGAFMSSTGVVAIFIPVVLSVAARMKTSPSRLMMPLGFAGLISGLMTLVATPPNMVVNSELVREGLPSFQFFSITPIGIAVLIAGVLYMLVVRRWLGSSEGGKQKEVYRRTFRDLIRDYQLAGRARRLAIRKGSPLIGHSLDELHLRSRYGANVVGIERWRRFRRVMVSATGGTELRERDVLLVDMSASEVDLREFCREQMLEPMVLRGEYFSEQSRDVGLAEVSMNPDSELLGKSLREIKFRTRYGLNVVAIRREGSALPGKIVDEPLRLGDVLLVIGDWKLIRILSTKPRNFIVLNLAAEIDTVAPASSQAPHALFSLALMVALMVTNEVPNFIAALIACLLMGKFRCIDMESAYRSIHWPSIILIVGMMPFAAALQKTGGIELIVNGLMDVAGNAGPQVMLVCLFVLCATIGLFISNTATAVLMAPIAIAAAHQMNVSPLPFAMVIGVAASAAFMTPVSSPVNTLILEPGGYKFADFIKIGVPFTIIVMLISVFLIPLLFPF
>CP029133.1|AWF40781.1|835611_836193_-|5'-nucleotidase-YfbR
MSYFFAHLSRLKLITRWPLMRNIRQENVSEHSLQVAFVAHALAVIKNRKFDGNVNAERIALQAMYHDASEVITGDMPTPIKYHNPQIAHEYKKIEKYAQQKLIEMLPEELQEDFRPLIDEQLHSEEETFIVKQADSLCAYLKCLEELAAGNSEFNLAKNRLEKTLAERHSPEMDYFMKVFVPGFSLSLDEISE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
CP029133_2	2.1\|812948\|31\|CP029133\|CRT	812948-812978	31	CP029133.1	3406119-3406149	1.0
CP029133_2	2.4\|812949\|31\|CP029133\|PILER-CR	812949-812979	31	CP029133.1	3406119-3406149	1.0
CP029133_2	2.6\|812947\|33\|CP029133\|CRISPRCasFinder	812947-812979	33	CP029133.1	3406118-3406150	1.0

1. spacer 2.1|812948|31|CP029133|CRT matches to position: 3406119-3406149, mismatch: 0, identity: 1.0

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
cttcaacgctcttttcgcgcagctcttttgc	Protospacer
*******************************

2. spacer 2.4|812949|31|CP029133|PILER-CR matches to position: 3406119-3406149, mismatch: 0, identity: 1.0

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
cttcaacgctcttttcgcgcagctcttttgc	Protospacer
*******************************

3. spacer 2.6|812947|33|CP029133|CRISPRCasFinder matches to position: 3406118-3406150, mismatch: 0, identity: 1.0

tcttcaacgctcttttcgcgcagctcttttgct	CRISPR spacer
tcttcaacgctcttttcgcgcagctcttttgct	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP047287	Proteus cibarius strain G11 plasmid p52, complete sequence	15649-15680	2	0.938
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP053373	Proteus cibarius strain G32 plasmid pG32-51, complete sequence	11938-11969	2	0.938
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP047341	Proteus cibarius strain ZF1 plasmid pZF1-cfr, complete sequence	21213-21244	2	0.938
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP045009	Proteus cibarius strain ZF2 plasmid pZF2-cfr, complete sequence	38543-38574	2	0.938
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024317	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp72, complete sequence	64738-64769	6	0.812
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024391	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp72, complete sequence	8781-8812	6	0.812
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024206	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp72, complete sequence	64744-64775	6	0.812
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024334	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp72, complete sequence	8793-8824	6	0.812
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024352	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp72, complete sequence	64754-64785	6	0.812
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP024372	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp72, complete sequence	64732-64763	6	0.812
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NZ_CP032411	Brevibacillus laterosporus strain E7593-50 plasmid pAZOBL1, complete sequence	68697-68728	7	0.781
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP021873	Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence	64299-64330	7	0.781
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	241259-241290	7	0.781
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP017109	Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence	313-344	7	0.781
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	255930-255961	8	0.75
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_011775	Bacillus cereus G9842 plasmid pG9842_209, complete sequence	150360-150391	8	0.75
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_017472	Lactobacillus amylovorus GRL1118 plasmid p2, complete sequence	20775-20806	8	0.75
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NC_017398	Borreliella burgdorferi N40 plasmid N40_cp32-5, complete sequence	3757-3788	8	0.75
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP009356	Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence	85349-85380	8	0.75
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NZ_CP046625	Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence	19764-19795	8	0.75
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MN695335	Synechococcus phage B23, complete genome	59407-59438	8	0.75
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MN695334	Synechococcus phage B3, complete genome	59404-59435	8	0.75
CP029133_2	2.1\|812948\|31\|CP029133\|CRT	812948-812978	31	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	326676-326706	9	0.71
CP029133_2	2.2\|813009\|31\|CP029133\|CRT	813009-813039	31	NC_021772	Salmonella phage FSL SP-058, complete genome	11010-11040	9	0.71
CP029133_2	2.2\|813009\|31\|CP029133\|CRT	813009-813039	31	NC_021782	Salmonella phage FSL SP-076, complete genome	6595-6625	9	0.71
CP029133_2	2.4\|812949\|31\|CP029133\|PILER-CR	812949-812979	31	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	326676-326706	9	0.71
CP029133_2	2.5\|813010\|31\|CP029133\|PILER-CR	813010-813040	31	NC_021772	Salmonella phage FSL SP-058, complete genome	11010-11040	9	0.71
CP029133_2	2.5\|813010\|31\|CP029133\|PILER-CR	813010-813040	31	NC_021782	Salmonella phage FSL SP-076, complete genome	6595-6625	9	0.71
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_012859	Vibrio parahaemolyticus strain A5-5 plasmid pZY5, complete sequence	296-327	9	0.719
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_028997	Enterobacteria phage JenP2, complete genome	57998-58029	9	0.719
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NC_014660	Acinetobacter phage Ac42, complete genome	164709-164740	9	0.719
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MK554696	Fusobacterium phage Fnu1, complete genome	3398-3429	9	0.719
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	MN013077	Klebsiella phage vB_KaeM_KaOmega, complete genome	88020-88051	9	0.719
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NC_019360	Citrobacter freundii plasmid pNDM-CIT, complete sequence	132672-132703	10	0.688
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	KY320277	Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence	245911-245942	10	0.688
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NZ_MG973074	Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence	125509-125540	10	0.688
CP029133_3	3.1\|822037\|32\|CP029133\|PILER-CR,CRISPRCasFinder,CRT	822037-822068	32	NZ_MF788071	Raoultella ornithinolytica strain 23141 plasmid p23141-3, complete sequence	226490-226521	10	0.688
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	JQ691611	Cronobacter phage CR9, complete genome	91093-91124	10	0.688
CP029133_3	3.5\|822281\|32\|CP029133\|CRISPRCasFinder,CRT	822281-822312	32	NC_028838	Clostridium phage phiCD506, complete genome	18539-18570	10	0.688

1. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP047287 (Proteus cibarius strain G11 plasmid p52, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

2. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP053373 (Proteus cibarius strain G32 plasmid pG32-51, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

3. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP047341 (Proteus cibarius strain ZF1 plasmid pZF1-cfr, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

4. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP045009 (Proteus cibarius strain ZF2 plasmid pZF2-cfr, complete sequence) position: , mismatch: 2, identity: 0.938

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
taactttaattccgttttcttttgcatcatta	Protospacer
*.*********************** ******

5. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP024317 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

6. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP024391 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

7. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP024206 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

8. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP024334 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

9. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP024352 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

10. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP024372 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-lp72, complete sequence) position: , mismatch: 6, identity: 0.812

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
agggtataattcctttttcttttgcttcaata	Protospacer
 *. * ******* *************** **

11. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032411 (Brevibacillus laterosporus strain E7593-50 plasmid pAZOBL1, complete sequence) position: , mismatch: 7, identity: 0.781

aatat-agaagagcaagaaaaaatagttaaaaa	CRISPR spacer
-gtatctgtagagcaagaaagaataggtaaaag	Protospacer
 .***  * ***********.***** *****.

12. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP021873 (Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence) position: , mismatch: 7, identity: 0.781

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
ggggtacaattcctttttcttttgcttcaata	Protospacer
 *. * .****** *************** **

13. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 7, identity: 0.781

tgactttaattccgttttcttttgctt-catta	CRISPR spacer
tctatttaattcatttttcttttgcttgtatt-	Protospacer
*   ********  ************* .***

14. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP017109 (Lactobacillus salivarius strain CICC23174 plasmid pLS_2 sequence) position: , mismatch: 7, identity: 0.781

tgactttaattccgttttcttttgctt-catta	CRISPR spacer
tctatttaattcatttttcttttgcttgtatt-	Protospacer
*   ********  ************* .***

15. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
gatatagaagagcaataaaaaataaagagtga	Protospacer
.************** ********.  *. .*

16. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_011775 (Bacillus cereus G9842 plasmid pG9842_209, complete sequence) position: , mismatch: 8, identity: 0.75

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
gatatagaagagcaataaaaaataaagagtga	Protospacer
.************** ********.  *. .*

17. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_017472 (Lactobacillus amylovorus GRL1118 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
aataaaaaagagcaagaaaaaataagggaatt	Protospacer
**** *.*****************.  .**

18. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NC_017398 (Borreliella burgdorferi N40 plasmid N40_cp32-5, complete sequence) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
ttactttaatactgttttcttttgcaactaaa	Protospacer
* ******** *.************  *   *

19. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP009356 (Vibrio tubiashii ATCC 19109 plasmid p251, complete sequence) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
gcacatcgattccatcttcttttgcttcattg	Protospacer
  ** *..*****.*.***************.

20. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NZ_CP046625 (Streptococcus sp. CNU G3 plasmid p1_CUN_G3, complete sequence) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
gtattgtaaatcagttttcttttgcttcaaca	Protospacer
  *.* *** ** **************** .*

21. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to MN695335 (Synechococcus phage B23, complete genome) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
tccggtgatttccgctttcttttggttcatta	Protospacer
*    * * *****.********* *******

22. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to MN695334 (Synechococcus phage B3, complete genome) position: , mismatch: 8, identity: 0.75

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
tccggtgatttccgctttcttttggttcatta	Protospacer
*    * * *****.********* *******

23. spacer 2.1|812948|31|CP029133|CRT matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.71

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
tctccacgcccttttcgcgcagctccggatc	Protospacer
..** ****.***************.    *

24. spacer 2.2|813009|31|CP029133|CRT matches to NC_021772 (Salmonella phage FSL SP-058, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

25. spacer 2.2|813009|31|CP029133|CRT matches to NC_021782 (Salmonella phage FSL SP-076, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

26. spacer 2.4|812949|31|CP029133|PILER-CR matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.71

cttcaacgctcttttcgcgcagctcttttgc	CRISPR spacer
tctccacgcccttttcgcgcagctccggatc	Protospacer
..** ****.***************.    *

27. spacer 2.5|813010|31|CP029133|PILER-CR matches to NC_021772 (Salmonella phage FSL SP-058, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

28. spacer 2.5|813010|31|CP029133|PILER-CR matches to NC_021782 (Salmonella phage FSL SP-076, complete genome) position: , mismatch: 9, identity: 0.71

gtgtaaaccgcatcttgttcagggatttctt	CRISPR spacer
gtgtacaccgcatcttgttcagtagtagtgg	Protospacer
***** **************** ..*  .

29. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_012859 (Vibrio parahaemolyticus strain A5-5 plasmid pZY5, complete sequence) position: , mismatch: 9, identity: 0.719

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
tgaagagatgagcaagaaaaaatagttatccc	Protospacer
 . * *** *******************

30. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_028997 (Enterobacteria phage JenP2, complete genome) position: , mismatch: 9, identity: 0.719

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
aatattgaagagcaagaagaaatgctatagcg	Protospacer
***** ************.****. *  *. .

31. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NC_014660 (Acinetobacter phage Ac42, complete genome) position: , mismatch: 9, identity: 0.719

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
cagtgtaaattgcgtattcttttgcttcattg	Protospacer
.... * **** *** ***************.

32. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to MK554696 (Fusobacterium phage Fnu1, complete genome) position: , mismatch: 9, identity: 0.719

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
tctctttaatttctttttcttttgctaatatc	Protospacer
*  ********.* ************    *

33. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to MN013077 (Klebsiella phage vB_KaeM_KaOmega, complete genome) position: , mismatch: 9, identity: 0.719

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
atcgtgttattacgttttcttttgcttcgttg	Protospacer
    * * *** ****************.**.

34. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NC_019360 (Citrobacter freundii plasmid pNDM-CIT, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
taacccaaagagcaaaaaaaaatagataaatt	Protospacer
 *  . .********.********* ****

35. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to KY320277 (Leclercia adecarboxylata strain Lec-476 plasmid pLec-476, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
taacccaaagagcaaaaaaaaatagataaatt	Protospacer
 *  . .********.********* ****

36. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG973074 (Clostridioides difficile strain HSJD-312 plasmid pHSJD-312, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
ataatagaagaacaaaaaaaaatagtatctgt	Protospacer
*  ********.***.**********    .

37. spacer 3.1|822037|32|CP029133|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF788071 (Raoultella ornithinolytica strain 23141 plasmid p23141-3, complete sequence) position: , mismatch: 10, identity: 0.688

aatatagaagagcaagaaaaaatagttaaaaa	CRISPR spacer
gcggaggacgagcaagaaaaaatagtgaagga	Protospacer
.  . .** ***************** **..*

38. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to JQ691611 (Cronobacter phage CR9, complete genome) position: , mismatch: 10, identity: 0.688

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
atcgtgctattacgttttcttttgcttcgttg	Protospacer
    * . *** ****************.**.

39. spacer 3.5|822281|32|CP029133|CRISPRCasFinder,CRT matches to NC_028838 (Clostridium phage phiCD506, complete genome) position: , mismatch: 10, identity: 0.688

tgactttaattccgttttcttttgcttcatta	CRISPR spacer
cagttaaaattctgttttcttttccttcatct	Protospacer
....*  *****.********** ******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

82346 : 91190

Caulobacter_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF42496.1\|82346_83492_-	hypothetical protein	A0A172Q0Y1	Acinetobacter_phage	1.2e-31	27.2
AWF41911.1\|83884_84469_+	bacterial stress family protein	K4JRX3	Caulobacter_phage	4.2e-17	30.2
AWF42281.1\|84601_85630_+	bacterial stress family protein	NA	NA	NA	NA
AWF40969.1\|85654_86110_+	terB	NA	NA	NA	NA
AWF42488.1\|86144_87170_+	integral membrane, TerC family protein	K7QKE8	Escherichia_phage	1.3e-74	47.9
AWF40912.1\|87237_87816_+	bacterial stress family protein	K4JRX3	Caulobacter_phage	2.4e-33	41.5
AWF42098.1\|87892_88468_+	bacterial stress family protein	K4JRX3	Caulobacter_phage	1.2e-27	40.3
AWF41300.1\|88564_89245_-	HAD phosphoserine phosphatase-like hydrolase, IB family protein	NA	NA	NA	NA
AWF42306.1\|89645_91190_+	methyl-accepting chemotaxis (MCP) signaling domain protein	A0A2H4J162	uncultured_Caudovirales_phage	7.0e-11	33.7

DBSCAN-SWA_2

647579 : 687124

Burkholderia_phage(20.51%)

head,terminase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF40142.1\|647579_648080_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	8.0e-41	56.4
AWF41968.1\|648079_650047_-	putative exonuclease	H9C157	Pectobacterium_phage	7.6e-119	39.8
AWF41216.1\|650061_650346_-	hypothetical protein	NA	NA	NA	NA
AWF42597.1\|650357_650690_-	hypothetical protein	H9C158	Pectobacterium_phage	3.6e-05	38.1
AWF39616.1\|650947_651148_+	hypothetical protein	NA	NA	NA	NA
AWF39635.1\|651144_651537_-	hypothetical protein	NA	NA	NA	NA
AWF40074.1\|651878_652535_-	helix-turn-helix domain protein	H9C160	Pectobacterium_phage	2.2e-30	35.3
AWF39790.1\|652626_652812_+	hypothetical protein	A0A1W6JP24	Morganella_phage	1.9e-08	60.0
AWF41589.1\|652852_653308_+	hypothetical protein	H9C162	Pectobacterium_phage	5.8e-30	55.4
AWF41233.1\|653367_653550_+	hypothetical protein	H9C163	Pectobacterium_phage	2.2e-12	55.9
AWF42493.1\|653551_654418_+	bacterial regulatory, gntR family protein	Q8W642	Enterobacteria_phage	3.1e-32	59.7
AWF41252.1\|654410_655004_+	istB-like ATP binding family protein	K7PLU3	Enterobacteria_phage	1.4e-44	47.6
AWF40132.1\|654996_656370_+	dnaB-like helicase N terminal domain protein	A0A192Y673	Salmonella_phage	4.2e-100	45.4
AWF41766.1\|656797_657601_+	D12 class N6 adenine-specific DNA methyltransferase family protein	A0A0K1LM14	Caulobacter_phage	9.2e-63	46.1
AWF42982.1\|657781_657949_+	hypothetical protein	H9C172	Pectobacterium_phage	9.8e-12	52.7
AWF40111.1\|658026_658620_+	hypothetical protein	K7PKS6	Enterobacteria_phage	4.3e-57	54.7
AWF42478.1\|658631_658943_+	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	5.9e-34	68.8
AWF39450.1\|658930_659464_+	hypothetical protein	Q5TJL7	Enterobacteria_phage	6.1e-39	51.9
AWF42859.1\|659714_660731_+	37-kD nucleoid-associated bacterial family protein	NA	NA	NA	NA
AWF41442.1\|660803_661946_+	hypothetical protein	A0A291AUQ1	Sinorhizobium_phage	5.5e-29	28.1
AWF41351.1\|662156_662420_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	1.8e-15	45.3
AWF41260.1\|662419_662890_+	phage lysozyme family protein	A0A1W6JNW4	Morganella_phage	6.8e-50	59.9
AWF40559.1\|663065_663494_+\|lysis	bacteriophage lysis family protein	A0A1P8DTG0	Proteus_phage	2.7e-45	73.5
AWF42492.1\|663613_663805_+	hypothetical protein	Q8W634	Enterobacteria_phage	3.6e-10	53.4
AWF42504.1\|663874_664873_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	8.2e-37	37.0
AWF43040.1\|664949_665066_-	hypothetical protein	NA	NA	NA	NA
AWF41451.1\|665080_666685_+\|terminase	phage terminase large subunit	A9YWZ6	Burkholderia_phage	1.2e-199	64.1
AWF42336.1\|666836_668192_+	hypothetical protein	A0A2H4P6S9	Pseudomonas_phage	3.9e-98	43.2
AWF40900.1\|668229_668943_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	A0A2H5BG15	Pseudoalteromonas_phage	1.4e-33	35.7
AWF42797.1\|668939_670199_+	hypothetical protein	Q6IWU4	Burkholderia_phage	1.6e-45	51.3
AWF40581.1\|670198_670696_+	hypothetical protein	NA	NA	NA	NA
AWF39628.1\|670722_671763_+	hypothetical protein	A0A088C493	Shewanella_sp._phage	1.1e-52	39.3
AWF42316.1\|671934_672174_+	hypothetical protein	NA	NA	NA	NA
AWF41044.1\|672176_672608_+	hypothetical protein	Q6IWU8	Burkholderia_phage	3.3e-11	32.4
AWF41361.1\|672607_673066_+	hypothetical protein	Q6IWU9	Burkholderia_phage	8.5e-13	39.6
AWF42472.1\|673065_673437_+	hypothetical protein	NA	NA	NA	NA
AWF41568.1\|673423_673939_+	hypothetical protein	NA	NA	NA	NA
AWF41016.1\|673947_675435_+	hypothetical protein	A0A088C3U1	Shewanella_sp._phage	7.9e-84	38.3
AWF42459.1\|675445_675898_+	hypothetical protein	I7ATP4	Escherichia_phage	3.4e-22	38.8
AWF41420.1\|675937_676396_+	hypothetical protein	Q6IWV4	Burkholderia_phage	6.7e-26	48.5
AWF42599.1\|676479_678774_+	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	1.4e-18	27.7
AWF40094.1\|678770_679298_+	hypothetical protein	NA	NA	NA	NA
AWF41738.1\|679297_679615_+	hypothetical protein	Q6IWP9	Burkholderia_phage	7.4e-08	32.3
AWF39875.1\|679583_680396_+	hypothetical protein	A1Z005	Burkholderia_virus	1.8e-10	26.0
AWF39681.1\|680398_681091_+	hypothetical protein	A1Z003	Burkholderia_virus	9.1e-35	39.4
AWF41003.1\|681087_681432_+	hypothetical protein	NA	NA	NA	NA
AWF39979.1\|681424_682612_+	hypothetical protein	Q6IWQ3	Burkholderia_phage	1.1e-69	40.6
AWF42187.1\|682608_683265_+	hypothetical protein	Q6IWQ4	Burkholderia_phage	7.5e-39	40.3
AWF40105.1\|683270_684710_+	carbohydrate binding domain protein	A0A2K9V2I0	Shigella_phage	2.2e-30	42.3
AWF41931.1\|684839_685394_-	short C-terminal domain protein	NA	NA	NA	NA
AWF39886.1\|685497_685773_-	putative phage protein	NA	NA	NA	NA
AWF41148.1\|685797_686043_-	dinI-like family protein	NA	NA	NA	NA
AWF41582.1\|686116_686272_+	hypothetical protein	NA	NA	NA	NA
AWF42368.1\|686593_687124_+	cytidine and deoxycytidylate deaminase zinc-binding region family protein	S4VYT2	Pandoravirus	1.4e-06	31.5

DBSCAN-SWA_3

886941 : 905803

Burkholderia_phage(26.67%)

plate,holin,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF41776.1\|886941_887757_+	antitermination family protein	M9NZB0	Enterobacteria_phage	1.6e-54	43.4
AWF40042.1\|888188_888437_+\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	8.9e-17	53.8
AWF42140.1\|888439_888844_+	hypothetical protein	A0A0E3JJ20	Enterobacteria_phage	1.0e-25	46.6
AWF41364.1\|888873_889290_+\|lysis	bacteriophage lysis family protein	NA	NA	NA	NA
AWF41485.1\|889326_889839_+	hypothetical protein	NA	NA	NA	NA
AWF42146.1\|889847_891335_+	hypothetical protein	A0A088C3U1	Shewanella_sp._phage	1.9e-77	35.7
AWF40992.1\|891345_891798_+	hypothetical protein	NA	NA	NA	NA
AWF40601.1\|891857_892316_+	hypothetical protein	Q6IWV4	Burkholderia_phage	1.9e-25	48.5
AWF41697.1\|892398_894702_+	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	4.4e-17	23.8
AWF41959.1\|894704_895199_+	putative phage protein	NA	NA	NA	NA
AWF42817.1\|895204_895525_+	hypothetical protein	NA	NA	NA	NA
AWF42263.1\|895493_896306_+	hypothetical protein	Q6IWQ0	Burkholderia_phage	9.0e-42	39.2
AWF42122.1\|896308_897001_+\|plate	putative phage baseplate protein	A0A2H4P6V3	Pseudomonas_phage	1.2e-29	35.7
AWF41476.1\|896997_897342_+	hypothetical protein	NA	NA	NA	NA
AWF39889.1\|897334_898522_+	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	1.9e-72	37.7
AWF42081.1\|898518_899175_+	hypothetical protein	Q6IWQ4	Burkholderia_phage	2.3e-35	39.9
AWF41109.1\|899180_900416_+	hypothetical protein	Q6IWQ6	Burkholderia_phage	2.4e-14	34.1
AWF41204.1\|900555_900735_-	hypothetical protein	NA	NA	NA	NA
AWF40311.1\|901303_901846_+	hypothetical protein	A0A1V0SIY0	Klosneuvirus	1.9e-19	34.7
AWF41532.1\|901961_902738_-	DMSO reductase anchor subunit family protein	A0A077SK59	Escherichia_phage	5.1e-42	39.8
AWF42083.1\|902741_903359_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	4.4e-89	68.3
AWF40524.1\|903370_905803_-	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein	A0A077SK27	Escherichia_phage	5.0e-261	54.5

DBSCAN-SWA_4

1265223 : 1393338

174

Proteus_phage(18.48%)

terminase,lysis,protease,portal,head,tail,capsid,tRNA,integrase,transposase

attL 1268344:1268398|attR 1321186:1321240

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF39793.1\|1265223_1266219_-\|integrase	integrase	Q9MCR4	Enterobacteria_phage	9.3e-73	44.9
AWF41613.1\|1266417_1266756_-	hypothetical protein	A0A1P8DTH6	Proteus_phage	5.6e-14	45.0
AWF42699.1\|1266748_1266925_-	putative phage protein	NA	NA	NA	NA
AWF39393.1\|1267314_1267536_+	hypothetical protein	NA	NA	NA	NA
AWF41753.1\|1267689_1268118_-	ASCH domain protein	R9VWB9	Serratia_phage	5.9e-08	43.5
AWF39541.1\|1268186_1268366_-	hypothetical protein	NA	NA	NA	NA
1268344:1268398	attL	NA	NA	NA	NA
AWF41629.1\|1268433_1268862_-	single-stranded DNA-binding protein	A0A1W6JNW8	Morganella_phage	4.7e-50	73.9
AWF41531.1\|1268851_1269550_-	exonuclease	A0A2R2Z325	Escherichia_phage	7.0e-75	57.8
AWF39576.1\|1269546_1270287_-	recombinase, phage RecT family protein	A0A2L1IV84	Escherichia_phage	1.6e-77	61.2
AWF39349.1\|1270427_1270631_-	hypothetical protein	A0A1P8DTG3	Proteus_phage	3.1e-28	97.0
AWF41845.1\|1270806_1270989_-	hypothetical protein	A0A1P8DTH8	Proteus_phage	2.8e-20	85.0
AWF39213.1\|1271337_1271553_+	putative phage protein	NA	NA	NA	NA
AWF42636.1\|1271952_1272087_-	hypothetical protein	NA	NA	NA	NA
AWF40325.1\|1272677_1273646_-	serine dehydrogenase ase family protein	NA	NA	NA	NA
AWF41052.1\|1273783_1274509_-	helix-turn-helix family protein	A0A2I6PIE7	Escherichia_phage	8.9e-41	42.0
AWF41406.1\|1274614_1274842_+	helix-turn-helix family protein	E5AGE7	Erwinia_phage	6.0e-20	67.6
AWF42886.1\|1275053_1275332_+	hypothetical protein	A0A1P8DTF0	Proteus_phage	2.7e-06	39.5
AWF42892.1\|1275428_1275602_+	hypothetical protein	NA	NA	NA	NA
AWF42270.1\|1275613_1276366_+	helix-turn-helix domain protein	A5LH71	Enterobacteria_phage	9.6e-22	50.5
AWF40612.1\|1276365_1277751_+	replicative DNA helicase	Q716D2	Shigella_phage	1.4e-114	47.7
AWF42893.1\|1277772_1278108_+	hypothetical protein	A0A1C9LVV9	Vibrio_phage	2.3e-23	38.7
AWF39834.1\|1278241_1278625_+	putative phage protein	A0A2I7QR39	Vibrio_phage	4.1e-13	36.7
AWF39599.1\|1279029_1279167_+	crossover junction endodeoxyribonuclease RusA superfamily protein	NA	NA	NA	NA
AWF40744.1\|1279183_1279339_+	endodeoxyribonuclease RusA family protein	G8C7V6	Escherichia_phage	1.7e-18	85.7
AWF41179.1\|1279338_1279971_+	phage antitermination Q family protein	I6PDF8	Cronobacter_phage	3.3e-23	34.3
AWF42701.1\|1280474_1280804_+	inner membrane protein YagU	NA	NA	NA	NA
AWF42386.1\|1280962_1281385_+	hypothetical protein	NA	NA	NA	NA
AWF40632.1\|1281438_1281708_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	6.0e-19	53.5
AWF41492.1\|1281707_1282178_+	phage lysozyme family protein	A0A1W6JNW4	Morganella_phage	2.2e-48	61.2
AWF42232.1\|1282159_1282318_+	hypothetical protein	NA	NA	NA	NA
AWF40033.1\|1282320_1282782_+\|lysis	bacteriophage lysis family protein	A0A1P8DTG0	Proteus_phage	5.7e-25	48.3
AWF41958.1\|1283479_1283602_+	hypothetical protein	A0A1W6JNV6	Morganella_phage	3.4e-06	59.0
AWF42681.1\|1283703_1283868_+	hypothetical protein	NA	NA	NA	NA
AWF40190.1\|1283947_1284556_+	putative dNA repair protein RecN	A0A077KBY7	Edwardsiella_phage	8.2e-64	68.0
AWF40437.1\|1284558_1286046_+\|terminase	putative phage terminase large subunit	A0A1W6JNY3	Morganella_phage	2.6e-265	89.3
AWF39822.1\|1286045_1287416_+	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	2.0e-118	48.6
AWF40875.1\|1287436_1288534_+	phage Mu F like family protein	I6PD76	Cronobacter_phage	9.5e-103	51.7
AWF41435.1\|1288645_1289407_+	putative phage protein	A0A1B0VMG1	Pseudomonas_phage	2.0e-67	59.3
AWF40622.1\|1289420_1290374_+\|capsid	putative major capsid protein	A0A1B0VMF8	Pseudomonas_phage	1.4e-126	71.6
AWF39566.1\|1290547_1290661_+	hypothetical protein	NA	NA	NA	NA
AWF42614.1\|1290699_1291179_+	putative phage protein	G8C7P9	Escherichia_phage	2.9e-32	47.7
AWF43003.1\|1291220_1291532_+	hypothetical protein	I6PD77	Cronobacter_phage	5.4e-19	50.6
AWF40223.1\|1291548_1292115_+	putative gp12	G8C7Q1	Escherichia_phage	3.8e-47	51.3
AWF39687.1\|1292111_1292513_+	bacteriophage related domain of unknown function family protein	NA	NA	NA	NA
AWF41976.1\|1292558_1293215_+\|tail	phage tail family protein	G8C7Q3	Escherichia_phage	8.6e-59	57.7
AWF41333.1\|1293266_1293572_+	hypothetical protein	I6PDG2	Cronobacter_phage	6.6e-22	55.4
AWF41535.1\|1293586_1293874_+	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	9.0e-13	49.3
AWF41810.1\|1294291_1294633_+	hypothetical protein	E7C9U7	Salmonella_phage	3.1e-36	65.7
AWF39245.1\|1294646_1294829_-	putative orf59a protein	A0A192Y6A8	Salmonella_phage	3.7e-20	76.3
AWF42178.1\|1295297_1295423_+	hypothetical protein	NA	NA	NA	NA
AWF42746.1\|1295436_1295895_+	hypothetical protein	NA	NA	NA	NA
AWF41901.1\|1296154_1296991_-	putative antirepressor protein	I6S627	Salmonella_phage	1.7e-72	59.6
AWF41538.1\|1297155_1297545_+	helix-turn-helix family protein	NA	NA	NA	NA
AWF41524.1\|1297958_1298099_+	hypothetical protein	NA	NA	NA	NA
AWF41092.1\|1298091_1298484_+	hypothetical protein	NA	NA	NA	NA
AWF40984.1\|1298551_1298785_+	hypothetical protein	NA	NA	NA	NA
AWF41212.1\|1298910_1299732_+	hypothetical protein	I6PDJ9	Cronobacter_phage	2.3e-21	50.9
AWF42153.1\|1299792_1302723_+\|tail	phage tail tape measure protein, lambda family	K7PMB9	Enterobacterial_phage	1.1e-132	35.5
AWF42420.1\|1302869_1303025_+	putative phage protein	NA	NA	NA	NA
AWF40211.1\|1303387_1303729_+\|tail	phage minor tail family protein	I6PBN7	Cronobacter_phage	9.0e-28	50.0
AWF41992.1\|1303725_1304469_+\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	7.1e-86	58.6
AWF41642.1\|1304465_1305176_+	nlpC/P60 family protein	A0A1P8DTI6	Proteus_phage	8.9e-86	62.0
AWF39753.1\|1305172_1305778_+\|tail	bacteriophage lambda tail assembly I family protein	F1C572	Cronobacter_phage	1.9e-52	56.8
AWF43022.1\|1305829_1310023_+	hypothetical protein	F1C571	Cronobacter_phage	2.2e-301	54.4
AWF39815.1\|1310028_1310385_+	hypothetical protein	NA	NA	NA	NA
AWF40100.1\|1310344_1311001_+	putative phage protein	NA	NA	NA	NA
AWF39704.1\|1311050_1311311_+	hypothetical protein	A0A1P8DTJ0	Proteus_phage	1.9e-17	57.4
AWF40289.1\|1311530_1311911_+	hypothetical protein	NA	NA	NA	NA
AWF42918.1\|1312019_1312289_-	helix-turn-helix domain protein	NA	NA	NA	NA
AWF42227.1\|1312425_1313508_-	fimbrial family protein	NA	NA	NA	NA
AWF41507.1\|1313517_1316052_-	papC C-terminal domain protein	NA	NA	NA	NA
AWF40022.1\|1316061_1316742_-	gram-negative pili assembly chaperone, C-terminal domain protein	NA	NA	NA	NA
AWF41144.1\|1316852_1317398_-	fimbrial family protein	NA	NA	NA	NA
AWF40114.1\|1317628_1317781_+	hypothetical protein	NA	NA	NA	NA
AWF41229.1\|1317891_1318032_-	hot	A0A1P8DTI0	Proteus_phage	7.2e-16	93.5
AWF41025.1\|1318306_1319302_-\|integrase	integrase	Q9MCR4	Enterobacteria_phage	5.4e-73	44.9
AWF39304.1\|1319500_1319839_-	hypothetical protein	A0A1P8DTH6	Proteus_phage	1.3e-13	45.0
AWF41238.1\|1319831_1320008_-	putative phage protein	NA	NA	NA	NA
AWF41529.1\|1320165_1320411_-	putative phage protein	NA	NA	NA	NA
AWF42339.1\|1320403_1320673_-	hypothetical protein	A0A1P8DTI8	Proteus_phage	4.1e-15	53.9
AWF41576.1\|1320672_1320852_-	hypothetical protein	NA	NA	NA	NA
AWF40172.1\|1320881_1321010_-	hypothetical protein	NA	NA	NA	NA
AWF40491.1\|1321241_1321427_-	hypothetical protein	NA	NA	NA	NA
1321186:1321240	attR	NA	NA	NA	NA
AWF41100.1\|1321595_1322093_-	single-stranded DNA-binding protein	A0A220NRQ8	Escherichia_phage	5.7e-47	68.4
AWF41630.1\|1322085_1322619_-	hypothetical protein	A0A1W6JP41	Morganella_phage	4.8e-52	58.9
AWF41517.1\|1322675_1323503_-	hypothetical protein	A0A2R2Z323	Escherichia_phage	5.5e-79	56.6
AWF42463.1\|1323568_1323943_-	hypothetical protein	Q8HAA1	Salmonella_phage	7.1e-42	70.6
AWF41634.1\|1324046_1324733_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	2.5e-16	32.5
AWF40909.1\|1325244_1325877_-	repressor protein C2	K7PLZ5	Enterobacterial_phage	3.9e-40	44.8
AWF42300.1\|1325979_1326171_+	hypothetical protein	NA	NA	NA	NA
AWF42055.1\|1326222_1326885_+	hypothetical protein	NA	NA	NA	NA
AWF41365.1\|1326900_1327359_+	hypothetical protein	K7PJS5	Enterobacterial_phage	6.0e-27	50.8
AWF42461.1\|1327645_1327825_+	hypothetical protein	A0A1W6JP38	Morganella_phage	1.1e-11	55.2
AWF41272.1\|1327837_1328899_+	conserved phage family protein	H2DE83	Erwinia_phage	7.9e-30	55.3
AWF40720.1\|1328898_1329285_+	phage N-6-adenine-methyltransferase	K7PGU4	Enterobacteria_phage	2.4e-45	64.0
AWF39203.1\|1329533_1329929_+	hypothetical protein	NA	NA	NA	NA
AWF41733.1\|1330001_1330385_+	endodeoxyribonuclease RusA family protein	A0A1C9IIA0	Salmonella_phage	1.7e-27	53.7
AWF40668.1\|1330403_1331207_+	kilA-N domain protein	A0A1W6JP13	Morganella_phage	4.4e-89	62.7
AWF41014.1\|1331203_1332229_+	hypothetical protein	A0A1W6JP62	Morganella_phage	9.9e-86	47.7
AWF39284.1\|1332256_1332937_+	phage antitermination Q family protein	A0A1W6JP37	Morganella_phage	3.6e-52	50.0
AWF42767.1\|1333095_1333290_+	hypothetical protein	NA	NA	NA	NA
AWF40447.1\|1333363_1334386_+	DNA methylase family protein	A0A1W6JP25	Morganella_phage	5.3e-132	70.1
AWF41544.1\|1334638_1335061_+	putative phage protein	NA	NA	NA	NA
AWF41386.1\|1335217_1335553_+	membrane-bound lysozyme-inhibitor of c-type lysozyme family protein	NA	NA	NA	NA
AWF40302.1\|1335633_1335870_+	hypothetical protein	NA	NA	NA	NA
AWF41520.1\|1335823_1336081_-	hypothetical protein	NA	NA	NA	NA
AWF40387.1\|1336225_1336489_+	putative potassium channel protein	A0A2H4FNF0	Salmonella_phage	2.7e-19	53.5
AWF42385.1\|1336488_1336959_+	phage lysozyme family protein	A0A1W6JNW4	Morganella_phage	6.8e-50	61.2
AWF42237.1\|1337101_1337563_+\|lysis	bacteriophage lysis family protein	A0A2H4JHL8	uncultured_Caudovirales_phage	8.5e-13	34.0
AWF40054.1\|1337794_1337944_+	hypothetical protein	NA	NA	NA	NA
AWF40426.1\|1338211_1338796_+	putative phage protein	H6WRU8	Salmonella_phage	2.4e-20	41.0
AWF40934.1\|1338882_1339002_+	hypothetical protein	NA	NA	NA	NA
AWF40753.1\|1339033_1339342_+	putative sb55	Q8HA83	Salmonella_phage	2.2e-33	68.0
AWF42112.1\|1339374_1339713_+	HNH endonuclease family protein	F1C587	Cronobacter_phage	7.1e-41	67.0
AWF40791.1\|1339715_1339928_+	hypothetical protein	A0A1W6JP16	Morganella_phage	1.4e-07	44.8
AWF40332.1\|1340052_1340520_+\|terminase	phage terminase, small subunit, P27 family	Q9B019	Phage_GMSE-1	5.5e-44	59.7
AWF41413.1\|1340545_1342216_+	phage Terminase family protein	A0A0U2C138	Paracoccus_phage	9.9e-144	46.2
AWF40337.1\|1342216_1343548_+\|portal	phage portal protein, HK97 family	A0A1P8DTI5	Proteus_phage	2.7e-200	76.7
AWF42099.1\|1343544_1344396_+\|protease	clp protease family protein	A0A1P8DTI2	Proteus_phage	5.4e-130	84.6
AWF42025.1\|1344407_1345622_+\|capsid	phage major capsid protein, HK97 family	A0A1P8DTJ7	Proteus_phage	1.9e-200	89.4
AWF42773.1\|1345667_1345886_+	hypothetical protein	A0A1P8DTJ1	Proteus_phage	6.4e-11	81.0
AWF39897.1\|1345885_1346212_+\|head,tail	phage gp6-like head-tail connector family protein	A0A1P8DTJ4	Proteus_phage	5.8e-40	75.0
AWF42829.1\|1346220_1346550_+\|head,tail	phage head-tail joining family protein	B5WZS5	Pseudomonas_phage	1.1e-11	38.7
AWF39901.1\|1346542_1347013_+	hypothetical protein	A0A0R6PHU8	Moraxella_phage	1.3e-11	31.1
AWF39867.1\|1347018_1347360_+	hypothetical protein	NA	NA	NA	NA
AWF39442.1\|1347447_1348035_+	hypothetical protein	NA	NA	NA	NA
AWF42253.1\|1348099_1348516_+	hypothetical protein	NA	NA	NA	NA
AWF42579.1\|1348560_1348791_+	hypothetical protein	NA	NA	NA	NA
AWF40982.1\|1348831_1352119_+\|tail	phage tail tape measure protein, lambda family	Q8W6T6	Burkholderia_virus	9.6e-50	40.2
AWF40975.1\|1352119_1352716_+	hypothetical protein	S4TSP7	Salmonella_phage	3.5e-51	53.3
AWF39522.1\|1352715_1353297_+	hypothetical protein	Q7Y3Z7	Yersinia_phage	3.1e-52	50.0
AWF40955.1\|1353335_1353614_+	hypothetical protein	NA	NA	NA	NA
AWF42558.1\|1353645_1354044_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	9.2e-32	47.7
AWF42604.1\|1354043_1357769_+	hypothetical protein	Q7Y3Z3	Yersinia_phage	3.4e-200	51.8
AWF42745.1\|1358090_1358777_+	hypothetical protein	NA	NA	NA	NA
AWF41969.1\|1358773_1359040_+	hypothetical protein	NA	NA	NA	NA
AWF43054.1\|1359056_1359317_+	hypothetical protein	A0A1P8DTJ0	Proteus_phage	1.9e-17	57.4
AWF39836.1\|1359536_1359926_+	hypothetical protein	NA	NA	NA	NA
AWF41807.1\|1360018_1360324_-	helix-turn-helix domain protein	NA	NA	NA	NA
AWF39592.1\|1360714_1360975_-	hypothetical protein	NA	NA	NA	NA
AWF42798.1\|1360979_1361210_-	hot	A0A1P8DTI0	Proteus_phage	1.2e-31	92.1
AWF41278.1\|1361487_1361826_+	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA
AWF39853.1\|1361977_1362277_-\|transposase	transposase IS200 like family protein	A0A1S5RHE3	Helicobacter_phage	1.1e-29	64.2
AWF40081.1\|1362416_1363625_+\|transposase	transposase, IS605 OrfB family	A0A1B0VCD8	Salmonella_phage	2.4e-187	80.5
AWF40180.1\|1363695_1364334_-	ribonuclease T	NA	NA	NA	NA
AWF42655.1\|1364429_1364819_-	lactoylglutathione lyase	NA	NA	NA	NA
AWF42033.1\|1365140_1365257_+	hypothetical protein	NA	NA	NA	NA
AWF42617.1\|1365719_1366148_+	transcriptional regulator SlyA	NA	NA	NA	NA
AWF42956.1\|1366492_1366960_-	outer membrane lipoprotein SlyB	NA	NA	NA	NA
AWF41518.1\|1367180_1368293_+	hypothetical protein	NA	NA	NA	NA
AWF42548.1\|1368336_1368990_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
AWF39496.1\|1369120_1370395_+\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	3.6e-85	42.8
AWF39823.1\|1370515_1371385_+	pyridoxal kinase	NA	NA	NA	NA
AWF40615.1\|1371463_1372075_-	glutathione S-transferase GST-6.0	NA	NA	NA	NA
AWF40361.1\|1372293_1373082_-	enoyl-[acyl-carrier-protein] reductase [NADH] FabI	NA	NA	NA	NA
AWF40643.1\|1373290_1374100_-	ABC transporter family protein	G9BWD6	Planktothrix_phage	1.0e-13	26.9
AWF39381.1\|1374089_1375052_-	oligopeptide/dipeptide ABC transporter, ATP-binding, C-terminal domain protein	G9BWD6	Planktothrix_phage	5.5e-06	24.1
AWF40769.1\|1375090_1375984_-	peptide transport system permease protein SapC	NA	NA	NA	NA
AWF40128.1\|1375970_1376936_-	peptide transport system permease protein SapB	NA	NA	NA	NA
AWF42416.1\|1376932_1378597_-	bacterial extracellular solute-binding, 5 Middle family protein	NA	NA	NA	NA
AWF39432.1\|1378904_1379909_-	psp operon transcriptional activator	NA	NA	NA	NA
AWF42763.1\|1380125_1380794_+	phage shock protein A	NA	NA	NA	NA
AWF41460.1\|1380869_1381061_+	phage shock protein B	NA	NA	NA	NA
AWF40592.1\|1381066_1381417_+	phage shock protein C	NA	NA	NA	NA
AWF41302.1\|1381739_1383134_+	hypothetical protein	NA	NA	NA	NA
AWF41818.1\|1383130_1384177_+	hypothetical protein	NA	NA	NA	NA
AWF42412.1\|1384640_1385063_+	hypothetical protein	NA	NA	NA	NA
AWF42801.1\|1385199_1386765_+	transcriptional regulatory protein TyrR	NA	NA	NA	NA
AWF41704.1\|1386864_1387368_-	putative thiol peroxidase	NA	NA	NA	NA
AWF42766.1\|1387593_1389213_+	periplasmic murein peptide-binding protein	NA	NA	NA	NA
AWF41735.1\|1389569_1390130_-	outer membrane beta-barrel domain protein	NA	NA	NA	NA
AWF41070.1\|1390422_1390677_-	hypothetical protein	NA	NA	NA	NA
AWF41760.1\|1391119_1392103_+	zinc transport protein ZntB	NA	NA	NA	NA
AWF40317.1\|1392417_1393338_-\|tRNA	tRNA 2-thiocytidine biosynthesis protein TtcA	A0A0U2S5Z2	Escherichia_phage	1.2e-130	89.5

DBSCAN-SWA_5

1782616 : 1801188

Proteus_phage(26.67%)

tail,integrase

attL 1787190:1787206|attR 1800941:1800957

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF39763.1\|1782616_1782754_-	hypothetical protein	A0A1P8DTJ0	Proteus_phage	7.8e-15	81.4
AWF41508.1\|1782832_1782967_+	hypothetical protein	NA	NA	NA	NA
AWF42833.1\|1783148_1783301_-	isocitrate/isopropylmalate dehydrogenase family protein	Q77Z09	Phage_21	6.8e-20	92.0
AWF42239.1\|1783806_1784769_+	reverse transcriptase family protein	NA	NA	NA	NA
AWF42119.1\|1784872_1786339_+	recF/RecN/SMC N terminal domain protein	C7BGE8	Burkholderia_phage	5.0e-14	34.5
AWF40708.1\|1786335_1786965_+	hypothetical protein	NA	NA	NA	NA
1787190:1787206	attL	NA	NA	NA	NA
AWF41090.1\|1787771_1787906_-	hypothetical protein	NA	NA	NA	NA
AWF41863.1\|1787883_1788438_-\|tail	putative tail fiber	A0A1P8DTJ0	Proteus_phage	6.5e-68	81.3
AWF40411.1\|1788462_1789047_-	hypothetical protein	A0A2H4PRH0	Proteus_phage	4.0e-23	70.0
AWF40380.1\|1789047_1789371_-	hypothetical protein	A0A1P8DTJ0	Proteus_phage	1.2e-26	62.3
AWF41615.1\|1789387_1789654_-	hypothetical protein	NA	NA	NA	NA
AWF41402.1\|1789650_1790337_-	hypothetical protein	NA	NA	NA	NA
AWF42953.1\|1790658_1792758_-	hypothetical protein	A0A0P0ZEQ8	Stx2-converting_phage	1.4e-131	50.2
AWF39597.1\|1792873_1793263_-	putative membrane protein	S4TRS4	Salmonella_phage	2.1e-12	35.0
AWF43008.1\|1793654_1794671_-	DNA methylase family protein	A0A1W6JP25	Morganella_phage	3.0e-127	66.2
AWF41823.1\|1794972_1795131_-	hypothetical protein	NA	NA	NA	NA
AWF39367.1\|1795485_1795758_+	winged helix-turn-helix DNA-binding family protein	A0A2I7S995	Vibrio_phage	1.3e-16	67.2
AWF41847.1\|1796175_1796436_-	helix-turn-helix domain protein	NA	NA	NA	NA
AWF42241.1\|1796657_1797056_-	phage antitermination Q family protein	B6SCZ7	Bacteriophage	4.6e-31	55.3
AWF40048.1\|1797068_1798142_-	conserved phage family protein	A0A2H4JEZ8	uncultured_Caudovirales_phage	4.9e-27	36.3
AWF42563.1\|1798460_1799120_+	helix-turn-helix domain protein	H9C160	Pectobacterium_phage	4.9e-46	44.0
AWF39436.1\|1799361_1799619_+	excisionase-like family protein	NA	NA	NA	NA
AWF39511.1\|1799665_1800727_+\|integrase	phage integrase family protein	O21925	Phage_21	2.7e-118	59.3
AWF39312.1\|1801023_1801188_-	isocitrate/isopropylmalate dehydrogenase family protein	Q77Z09	Phage_21	1.4e-18	83.3
1800941:1800957	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2202731 : 2258273

Cronobacter_phage(25.0%)

terminase,lysis,transposase,tail,capsid,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF40575.1\|2202731_2203154_-\|transposase	transposase, IS605 OrfB family	A0A1B0VCD8	Salmonella_phage	1.2e-61	82.7
AWF39926.1\|2203284_2203491_-	hypothetical protein	NA	NA	NA	NA
AWF40584.1\|2203844_2204138_-	plasmid stabilization system family protein	NA	NA	NA	NA
AWF41702.1\|2204130_2204373_-	hypothetical protein	NA	NA	NA	NA
AWF42586.1\|2204529_2205012_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	1.6e-38	51.7
AWF40436.1\|2205168_2206812_-	phosphoglucomutase, alpha-D-glucose phosphate-specific	NA	NA	NA	NA
AWF40598.1\|2206886_2207438_-	negative modulator of initiation of replication	NA	NA	NA	NA
AWF39806.1\|2207902_2208688_+	esterase YbfF	A0A1L5C1K3	Mycobacterium_phage	1.0e-05	36.1
AWF39840.1\|2208886_2209186_+	ribbon-helix-helix, copG family protein	NA	NA	NA	NA
AWF41210.1\|2209344_2209872_+	flavodoxin	NA	NA	NA	NA
AWF41139.1\|2210062_2210509_+	ferric uptake regulation protein	NA	NA	NA	NA
AWF41209.1\|2210664_2210868_-	hypothetical protein	NA	NA	NA	NA
AWF41383.1\|2210960_2212355_-	chitoporin	NA	NA	NA	NA
AWF39289.1\|2212992_2214660_-\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	1.0e-286	85.0
AWF39665.1\|2214902_2215133_+	hot	A0A1P8DTI0	Proteus_phage	1.2e-31	92.1
AWF39906.1\|2215137_2215251_+	hypothetical protein	NA	NA	NA	NA
AWF41641.1\|2215492_2215747_-	colicin-E3 immunity protein	NA	NA	NA	NA
AWF42126.1\|2215757_2215898_-	cytotoxic family protein	NA	NA	NA	NA
AWF40136.1\|2215964_2216222_-	colicin-E8 immunity protein	NA	NA	NA	NA
AWF41001.1\|2216224_2218147_-	colicin-E2	NA	NA	NA	NA
AWF42782.1\|2218519_2219206_-	putative phage protein	NA	NA	NA	NA
AWF42256.1\|2219497_2223691_-	hypothetical protein	F1C571	Cronobacter_phage	2.2e-301	54.4
AWF42211.1\|2223742_2224330_-\|tail	bacteriophage lambda tail assembly I family protein	F1C572	Cronobacter_phage	2.9e-58	60.4
AWF42581.1\|2224326_2225037_-	nlpC/P60 family protein	F1C573	Cronobacter_phage	1.8e-86	66.4
AWF41456.1\|2225033_2225777_-\|tail	phage minor tail protein L	K7PJS0	Enterobacterial_phage	1.4e-86	59.0
AWF43050.1\|2225773_2226115_-\|tail	phage minor tail family protein	I6PBN7	Cronobacter_phage	9.0e-28	50.0
AWF40025.1\|2226336_2226459_+	hypothetical protein	NA	NA	NA	NA
AWF40404.1\|2226478_2226721_-	putative phage protein	NA	NA	NA	NA
AWF42440.1\|2226808_2227021_-	hypothetical protein	NA	NA	NA	NA
AWF41297.1\|2227043_2229983_-\|tail	phage tail tape measure protein, lambda family	A0A2P0WA05	Enterobacter_phage	1.2e-141	35.4
AWF40441.1\|2230042_2230912_-	hypothetical protein	NA	NA	NA	NA
AWF40431.1\|2230949_2231843_-	ftsk gamma domain protein	NA	NA	NA	NA
AWF42008.1\|2231839_2231971_-	putative phage regulatory protein	NA	NA	NA	NA
AWF39415.1\|2232210_2232372_+	hicB family protein	NA	NA	NA	NA
AWF39439.1\|2232525_2233275_+	putative antirepressor protein	G0ZNF0	Cronobacter_phage	4.4e-59	45.2
AWF39861.1\|2233547_2234381_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	1.1e-26	28.9
AWF39679.1\|2234883_2235066_+	putative orf59a protein	A0A192Y6A8	Salmonella_phage	3.7e-20	76.3
AWF39890.1\|2235079_2235421_-	hypothetical protein	E7C9U7	Salmonella_phage	3.1e-36	65.7
AWF42700.1\|2235837_2236125_-	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	6.9e-13	49.3
AWF41797.1\|2236139_2236445_-	hypothetical protein	I6PDG2	Cronobacter_phage	6.6e-22	55.4
AWF42500.1\|2236496_2237153_-\|tail	phage tail family protein	G8C7Q3	Escherichia_phage	8.6e-59	57.7
AWF41452.1\|2237198_2237600_-	bacteriophage related domain of unknown function family protein	NA	NA	NA	NA
AWF42173.1\|2237596_2238163_-	putative gp12	G8C7Q1	Escherichia_phage	8.5e-47	51.3
AWF42569.1\|2238179_2238491_-	hypothetical protein	I6PD77	Cronobacter_phage	3.2e-16	46.9
AWF39776.1\|2238532_2239012_-	putative phage protein	G8C7P9	Escherichia_phage	2.9e-32	47.7
AWF39539.1\|2239051_2239165_-	hypothetical protein	NA	NA	NA	NA
AWF41339.1\|2239338_2240292_-\|capsid	putative major capsid protein	A0A1B0VMF8	Pseudomonas_phage	2.4e-126	71.2
AWF40972.1\|2240305_2241079_-	putative phage protein	A0A1B0VMG1	Pseudomonas_phage	3.5e-67	59.7
AWF41307.1\|2241161_2241749_-	hypothetical protein	NA	NA	NA	NA
AWF39329.1\|2241765_2242845_-	phage Mu F like family protein	I6PD76	Cronobacter_phage	1.5e-100	50.8
AWF42169.1\|2242865_2244236_-	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	2.8e-120	49.4
AWF41597.1\|2244235_2245735_-\|terminase	terminase-like family protein	G8C7P3	Escherichia_phage	3.4e-268	86.6
AWF40383.1\|2245806_2246373_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	1.8e-57	64.1
AWF40364.1\|2246440_2246668_+	hypothetical protein	NA	NA	NA	NA
AWF41587.1\|2246727_2246883_-	hypothetical protein	NA	NA	NA	NA
AWF42848.1\|2246879_2246996_-	hypothetical protein	NA	NA	NA	NA
AWF41869.1\|2247082_2247667_-	BRO family, N-terminal domain protein	Q3LZN7	Bacteriophage	3.3e-22	48.2
AWF41314.1\|2248011_2248437_-\|lysis	bacteriophage lysis family protein	M1FJ79	Enterobacteria_phage	2.6e-08	34.1
AWF39365.1\|2248615_2249086_-	phage lysozyme family protein	A0A1W6JNW4	Morganella_phage	2.6e-49	61.2
AWF40764.1\|2249085_2249349_-	putative potassium channel protein	A0A2H4FNF0	Salmonella_phage	2.7e-19	53.5
AWF39266.1\|2249421_2249844_-	hypothetical protein	NA	NA	NA	NA
AWF42663.1\|2251043_2251244_-	cold shock protein CspA	A0A1W6JNX5	Morganella_phage	6.7e-23	75.8
AWF40547.1\|2251840_2252299_-	hsp20/alpha crystallin family protein	NA	NA	NA	NA
AWF41627.1\|2252538_2253171_-	phage antitermination Q family protein	I6PDF8	Cronobacter_phage	2.1e-22	33.8
AWF39469.1\|2253170_2253326_-	endodeoxyribonuclease RusA family protein	G8C7V6	Escherichia_phage	7.7e-19	87.8
AWF42609.1\|2253892_2254276_-	putative phage protein	A0A2I7QR39	Vibrio_phage	4.1e-13	36.7
AWF39567.1\|2254367_2255753_-	replicative DNA helicase	Q716D2	Shigella_phage	1.0e-114	47.7
AWF43030.1\|2255752_2256505_-	helix-turn-helix domain protein	H9C164	Pectobacterium_phage	1.3e-21	33.5
AWF42931.1\|2256516_2256690_-	hypothetical protein	NA	NA	NA	NA
AWF42572.1\|2256786_2257134_-	hypothetical protein	A0A1P8DTF0	Proteus_phage	3.4e-06	35.4
AWF42071.1\|2257297_2257507_-	helix-turn-helix family protein	A0A1P8DTF8	Proteus_phage	3.3e-33	98.6
AWF39558.1\|2257655_2258273_+	repressor protein CI	A0A1P8DTH0	Proteus_phage	2.9e-117	98.0

DBSCAN-SWA_7

2261725 : 2268440

Salmonella_phage(33.33%)

integrase

attL 2254264:2254277|attR 2276600:2276613

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2254264:2254277	attL	NA	NA	NA	NA
AWF41578.1\|2261725_2262268_+	hypothetical protein	A0A1B1W2E3	Salmonella_phage	1.8e-33	38.5
AWF41450.1\|2262381_2262606_+	hypothetical protein	NA	NA	NA	NA
AWF42911.1\|2262694_2262850_+	putative phage protein	NA	NA	NA	NA
AWF41094.1\|2262914_2263112_+	hypothetical protein	NA	NA	NA	NA
AWF41081.1\|2263579_2264464_+	AAA domain protein	A0A1B1P9H8	Acinetobacter_phage	1.9e-61	52.0
AWF42193.1\|2264453_2264993_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	8.1e-55	59.7
AWF41303.1\|2265032_2265215_+	hypothetical protein	NA	NA	NA	NA
AWF41996.1\|2265283_2265709_+	ASCH domain protein	A0A077SLQ8	Escherichia_phage	1.4e-09	50.0
AWF41227.1\|2265771_2266026_+	hypothetical protein	NA	NA	NA	NA
AWF41469.1\|2266463_2266589_+	putative phage protein	NA	NA	NA	NA
AWF42210.1\|2266901_2267240_+	hypothetical protein	A0A1P8DTH6	Proteus_phage	1.9e-14	45.0
AWF41825.1\|2267438_2268440_+\|integrase	integrase	Q9MCR4	Enterobacteria_phage	9.1e-68	43.1
2276600:2276613	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2304355 : 2316317

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF41318.1\|2304355_2305567_+	D-alanyl-D-alanine carboxypeptidase DacA	B6DZZ7	Stx2-converting_phage	8.6e-105	49.1
AWF42029.1\|2305822_2306029_+	hypothetical protein	NA	NA	NA	NA
AWF42788.1\|2306401_2307031_+	lipoyl(octanoyl) transferase	NA	NA	NA	NA
AWF40242.1\|2307132_2308098_+	lipoyl synthase	NA	NA	NA	NA
AWF41588.1\|2308113_2308488_+	protein CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.7e-25	52.0
AWF40442.1\|2308962_2309082_+	hypothetical protein	NA	NA	NA	NA
AWF39489.1\|2309379_2309520_-	hypothetical protein	NA	NA	NA	NA
AWF42864.1\|2309556_2309766_-	cold shock-like protein CspE	A0A1W6JNX5	Morganella_phage	5.9e-22	74.2
AWF40402.1\|2309963_2310437_-	methylated-DNA-[]-cysteine S-methyltransferase family protein	NA	NA	NA	NA
AWF42912.1\|2310718_2310943_+	glutaredoxin-like NrdH family protein	V5UN81	Mycobacterium_phage	1.4e-13	47.9
AWF41758.1\|2310954_2311359_+	nrdI protein	R4JF54	Bacillus_phage	3.7e-12	38.5
AWF39197.1\|2311432_2313514_+	ribonucleoside-diphosphate reductase, alpha subunit	V9VI16	Lactococcus_phage	4.8e-204	51.6
AWF42484.1\|2313539_2314508_+	ribonucleotide reductase, small chain family protein	R4TBI6	Mycobacterium_phage	3.5e-133	71.0
AWF41051.1\|2315117_2316317_+	glycine betaine/L-proline transport ATP binding subunit	G3M9Y6	Bacillus_virus	3.8e-28	37.6

DBSCAN-SWA_9

3687802 : 3696649

Morganella_phage(50.0%)

integrase

attL 3678052:3678066|attR 3700895:3700909

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3678052:3678066	attL	NA	NA	NA	NA
AWF40689.1\|3687802_3689014_+\|integrase	phage integrase family protein	Q7M297	Enterobacteria_phage	2.3e-158	68.7
AWF41854.1\|3689227_3689887_+	hypothetical protein	NA	NA	NA	NA
AWF41839.1\|3690066_3690285_+	helix-turn-helix domain protein	A0A2H4J8C8	uncultured_Caudovirales_phage	4.3e-07	45.3
AWF41338.1\|3690284_3690677_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.5e-29	58.7
AWF40755.1\|3690989_3691784_+	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	1.7e-24	48.3
AWF41610.1\|3691783_3692422_+	icd-like domain protein	NA	NA	NA	NA
AWF40153.1\|3692577_3692808_+	hypothetical protein	NA	NA	NA	NA
AWF40329.1\|3692800_3692998_+	hypothetical protein	A0A1W6JPF0	Morganella_phage	3.2e-09	66.0
AWF41692.1\|3692985_3693294_+	hypothetical protein	NA	NA	NA	NA
AWF39646.1\|3693293_3693836_+	hypothetical protein	NA	NA	NA	NA
AWF40607.1\|3693931_3696649_+	hypothetical protein	A0A1W6JPG0	Morganella_phage	0.0e+00	67.4
3700895:3700909	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP029129_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029129_1

11328-11440

Orphan

Consensus_repeat	Method
ATATCGGGATTTACACACACAGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029129_1

>merge|CP029129|1|11328-11440|CRISPRCasFinder
TTATCGGGATTCACACACAAATAAATTCATACGATGATCACGAAATATCGGGATTTACACACACAGTAGTTACAATATCAACACAAAAAACATCGGGATTTGCACACAATATA

>CP029129|1|1|11328-11440|CRISPRCasFinder
TTATCGGGATTCACACACAAATA	AATTCATACGATGATCACGAA
ATATCGGGATTTACACACACAGT	AGTTACAATATCAACACAAAAA
ACATCGGGATTTGCACACAATATA

Protein	Signature genes	Signature genes Name	Protein_function
CP029129.1\|AWF39187.1\|5794_6313_-\|colicin-immunity-family-protein	unknown	unknown	gnl\|CDD\|367697
CP029129.1\|AWF39181.1\|9184_9388_+\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39189.1\|10347_11304_-\|replication-initiator-A-family-protein	unknown	unknown	gnl\|CDD\|370826
CP029129.1\|AWF39191.1\|4248_5715_+\|colicin-pore-forming-domain-protein	unknown	unknown	gnl\|CDD\|334348
CP029129.1\|AWF39178.1\|8550_8697_-\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39188.1\|9472_9838_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371282
CP029129.1\|AWF39179.1\|8674_8824_+\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39193.1\|12255_12408_+\|dnaJ-domain-protein	unknown	unknown	gnl\|CDD\|223560
CP029129.1\|AWF39192.1\|6764_7028_-\|prevent-host-death-family-protein	unknown	unknown	gnl\|CDD\|376852
CP029129.1\|AWF39184.1\|9933_10212_-\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39177.1\|7645_8299_+\|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein	unknown	unknown	gnl\|CDD\|349760

Protein	Function_ID	Function_description	E-value
CP029129.1\|AWF39189.1\|10347_11304_-\|replication-initiator-A-family-protein	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	4.86953e-91
CP029129.1\|AWF39191.1\|4248_5715_+\|colicin-pore-forming-domain-protein	gnl\|CDD\|334348	pfam01024, Colicin, Colicin pore forming domain.	2.59688e-83
CP029129.1\|AWF39188.1\|9472_9838_-\|hypothetical-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	3.50794e-09
CP029129.1\|AWF39187.1\|5794_6313_-\|colicin-immunity-family-protein	gnl\|CDD\|367697	pfam03857, Colicin_im, Colicin immunity protein. Colicin immunity proteins are plasmid-encoded proteins necessary for protecting the cell against colicins. Colicins are toxins released by bacteria during times of stress.	2.29694e-07
CP029129.1\|AWF39193.1\|12255_12408_+\|dnaJ-domain-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	1.38179e-10
CP029129.1\|AWF39192.1\|6764_7028_-\|prevent-host-death-family-protein	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.57284e-11
CP029129.1\|AWF39177.1\|7645_8299_+\|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.69774e-21

>CP029129.1|AWF39189.1|10347_11304_-|replication-initiator-A-family-protein
MKTLRPKKYKEEEFFIADEVEISSFRDELASMEHPFFALKGGDDKVREYRNNNISVLVRPATGIGLATVFDKDIWIYAISKLQQAIFEGKPISRTIAFTPYEFFVTTNRDKGGRSYDELKKALERLAGTRIQTNIVYSSEKQETENFGLIDKWRILEEKKGRLDIGMVEVTLPDWLYQGITKNKVLKINSDYFRIRKAIDRRIYEIARKHCGYQKSFSLSIELLHLKSGATSNKREFKRSIKKLSLVNDLPDYEVLLDAENDCVTFTNRHFDESLEKKMNQLAKNKNMIEEVVSNGKLPKKLQKKVATIADKISKEKR
>CP029129.1|AWF39184.1|9933_10212_-|hypothetical-protein
MLFLGIRYFLGVTLDVLLLMVVSIISVFRYLIIPLGIFALILFYYNNEKMWNVEMTVTMALMVSSLINPEVLQDIQPFQTLFGVKSPQSEAK
>CP029129.1|AWF39188.1|9472_9838_-|hypothetical-protein
MSYLRQQFLTEEESKLLVILQENVKENYHVFCKVRLSEFLYSSQKMGTSEFFNEFEIINSINLPFAIYDTLENQLVAAISYINPIEKSNLLENQDIKVIHLTMLKDTLTNGELSMFYSDSV
>CP029129.1|AWF39181.1|9184_9388_+|hypothetical-protein
MKQLTEFELEIIHAVVVLQELHDKPELSASVLKECNLSEIDCNELDDYEKDNLRIINKEYLVNLKGL
>CP029129.1|AWF39179.1|8674_8824_+|hypothetical-protein
MPESAISILDTEAERAGQNKTAILKAAILAYSNLDENSKNLALLESFKL
>CP029129.1|AWF39178.1|8550_8697_-|hypothetical-protein
MLIADSGKRKVDGISLFDVVGRLSPALMNWVVEFLVLVLESVKSKSGF
>CP029129.1|AWF39177.1|7645_8299_+|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein
MILVFASDKGGVGKTTTAINMAVMLKRKNKSVIMLKADRNRDLFVWSDIRAQAGFSAIPIHEAFGNISDEIKRLEKLCDVVVVDCAGHDSSEFRSALTVADVLLTLVKPSSSLEKNTLTNVTKTVRTAQKQHGNSDLKAHVLMTRIKSHKLQDAVSLENELKSDEIWLQPLKNRISELDIFENAVNAGVGVHEVEKASSLGVAKAQIELIAKEIGLI
>CP029129.1|AWF39192.1|6764_7028_-|prevent-host-death-family-protein
MEIIPAQLAKNQFGDLLMKAQREPVQISKHGKRVAVVISPDEYDQFTQLKLQNLKSILAESIEQAERGELHHIDDVFAPLTSNEIEG
>CP029129.1|AWF39187.1|5794_6313_-|colicin-immunity-family-protein
MDNKNHPNDHLLIKWGSIFIFISAIPIFIIFYFNDIDILFAVYEKINNIPSTYSSTYPIISKLSFFYCKLSPLIVLLFFIFCYKKLTLVKPIPINKLIINVIFPCLVITIISLYVLYFYNTDISDSGWSILKTISSNKHLLFGYYIAIFLGYYVWLFLFFISFIYLPFKSIR
>CP029129.1|AWF39191.1|4248_5715_+|colicin-pore-forming-domain-protein
MSKNNHSAETDHLSVTADRPSKGDLGSGPVGKGDGGDRNIISLSDPNASFSYTTSTIEGLEGLNFTVTVHGARIINPQNGHTTNNIEVDGKGNSVDYKKNNVQNNQLELPIPYNNKLARDRDLGRLTSRIRKDYFDLKNNKARVSIYNGHYIHTVTFDDAGNVQNISEEYIEKTYNRYSKGIPNEKKDRLEEVKRFAILGYKTEPSNILDYNVKIKEYEFIFTLNKLGFIEKFSKKIIKASQYESRQLNAFYKDLNIEQDEKKENLAKLMVVNAYQSYPQNKKFIQDAEKEALMGAADIITNTGEKISKHLGEKYKTIANEIASDLRNFQGKKLRSLSDALKMMEKINRNPNIKIKQADRVVLANAVRHVDTKILSENFQRLGKSFGVLGKVLSVEKLREKAAIGFETGNWKPLMLEVEAMIISGYATGIAISIAISFISSIASFLAIGALPTTLAIIATIMLISYLASLIDDKVVDKINNLLIPEAH
>CP029129.1|AWF39193.1|12255_12408_+|dnaJ-domain-protein
MNVQEALNIFGLSGELTEQDIKTAYKKAALKYHPDRNPLGAELMKAINAV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029129_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029129_2

11519-11639

Orphan

Consensus_repeat	Method
ATATCGGGATTTACACACACAGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029129_2

>merge|CP029129|2|11519-11639|CRISPRCasFinder
TTATCGGGATTTACACACAAAAAACGAAATAATTACTGTACAAATTTCAAACAGCGATTCGGGATTTACACACACCTCATTCGGGATTTACACACACTGACACGGGATTTACACACACGGA

>CP029129|2|2|11519-11639|CRISPRCasFinder
TTATCGGGATTTACACACAAAAA	ACGAAATAATTACTGTACAAATTTCAAACAGC
GATTCGGGATTTACACACACCTC	ATTCGGGATTTACACACACT
GACACGGGATTTACACACACGGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029129.1\|AWF39187.1\|5794_6313_-\|colicin-immunity-family-protein	unknown	unknown	gnl\|CDD\|367697
CP029129.1\|AWF39181.1\|9184_9388_+\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39189.1\|10347_11304_-\|replication-initiator-A-family-protein	unknown	unknown	gnl\|CDD\|370826
CP029129.1\|AWF39191.1\|4248_5715_+\|colicin-pore-forming-domain-protein	unknown	unknown	gnl\|CDD\|334348
CP029129.1\|AWF39178.1\|8550_8697_-\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39188.1\|9472_9838_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371282
CP029129.1\|AWF39179.1\|8674_8824_+\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39193.1\|12255_12408_+\|dnaJ-domain-protein	unknown	unknown	gnl\|CDD\|223560
CP029129.1\|AWF39192.1\|6764_7028_-\|prevent-host-death-family-protein	unknown	unknown	gnl\|CDD\|376852
CP029129.1\|AWF39184.1\|9933_10212_-\|hypothetical-protein	unknown	unknown	unknown
CP029129.1\|AWF39177.1\|7645_8299_+\|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein	unknown	unknown	gnl\|CDD\|349760

Protein	Function_ID	Function_description	E-value
CP029129.1\|AWF39189.1\|10347_11304_-\|replication-initiator-A-family-protein	gnl\|CDD\|370826	pfam10134, RPA, Replication initiator protein A. Members of this family of bacterial proteins are single-stranded DNA binding proteins that are involved in DNA replication, repair and recombination.	4.86953e-91
CP029129.1\|AWF39191.1\|4248_5715_+\|colicin-pore-forming-domain-protein	gnl\|CDD\|334348	pfam01024, Colicin, Colicin pore forming domain.	2.59688e-83
CP029129.1\|AWF39188.1\|9472_9838_-\|hypothetical-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	3.50794e-09
CP029129.1\|AWF39187.1\|5794_6313_-\|colicin-immunity-family-protein	gnl\|CDD\|367697	pfam03857, Colicin_im, Colicin immunity protein. Colicin immunity proteins are plasmid-encoded proteins necessary for protecting the cell against colicins. Colicins are toxins released by bacteria during times of stress.	2.29694e-07
CP029129.1\|AWF39193.1\|12255_12408_+\|dnaJ-domain-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	1.38179e-10
CP029129.1\|AWF39192.1\|6764_7028_-\|prevent-host-death-family-protein	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	2.57284e-11
CP029129.1\|AWF39177.1\|7645_8299_+\|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.69774e-21

>CP029129.1|AWF39189.1|10347_11304_-|replication-initiator-A-family-protein
MKTLRPKKYKEEEFFIADEVEISSFRDELASMEHPFFALKGGDDKVREYRNNNISVLVRPATGIGLATVFDKDIWIYAISKLQQAIFEGKPISRTIAFTPYEFFVTTNRDKGGRSYDELKKALERLAGTRIQTNIVYSSEKQETENFGLIDKWRILEEKKGRLDIGMVEVTLPDWLYQGITKNKVLKINSDYFRIRKAIDRRIYEIARKHCGYQKSFSLSIELLHLKSGATSNKREFKRSIKKLSLVNDLPDYEVLLDAENDCVTFTNRHFDESLEKKMNQLAKNKNMIEEVVSNGKLPKKLQKKVATIADKISKEKR
>CP029129.1|AWF39184.1|9933_10212_-|hypothetical-protein
MLFLGIRYFLGVTLDVLLLMVVSIISVFRYLIIPLGIFALILFYYNNEKMWNVEMTVTMALMVSSLINPEVLQDIQPFQTLFGVKSPQSEAK
>CP029129.1|AWF39188.1|9472_9838_-|hypothetical-protein
MSYLRQQFLTEEESKLLVILQENVKENYHVFCKVRLSEFLYSSQKMGTSEFFNEFEIINSINLPFAIYDTLENQLVAAISYINPIEKSNLLENQDIKVIHLTMLKDTLTNGELSMFYSDSV
>CP029129.1|AWF39181.1|9184_9388_+|hypothetical-protein
MKQLTEFELEIIHAVVVLQELHDKPELSASVLKECNLSEIDCNELDDYEKDNLRIINKEYLVNLKGL
>CP029129.1|AWF39179.1|8674_8824_+|hypothetical-protein
MPESAISILDTEAERAGQNKTAILKAAILAYSNLDENSKNLALLESFKL
>CP029129.1|AWF39178.1|8550_8697_-|hypothetical-protein
MLIADSGKRKVDGISLFDVVGRLSPALMNWVVEFLVLVLESVKSKSGF
>CP029129.1|AWF39177.1|7645_8299_+|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein
MILVFASDKGGVGKTTTAINMAVMLKRKNKSVIMLKADRNRDLFVWSDIRAQAGFSAIPIHEAFGNISDEIKRLEKLCDVVVVDCAGHDSSEFRSALTVADVLLTLVKPSSSLEKNTLTNVTKTVRTAQKQHGNSDLKAHVLMTRIKSHKLQDAVSLENELKSDEIWLQPLKNRISELDIFENAVNAGVGVHEVEKASSLGVAKAQIELIAKEIGLI
>CP029129.1|AWF39192.1|6764_7028_-|prevent-host-death-family-protein
MEIIPAQLAKNQFGDLLMKAQREPVQISKHGKRVAVVISPDEYDQFTQLKLQNLKSILAESIEQAERGELHHIDDVFAPLTSNEIEG
>CP029129.1|AWF39187.1|5794_6313_-|colicin-immunity-family-protein
MDNKNHPNDHLLIKWGSIFIFISAIPIFIIFYFNDIDILFAVYEKINNIPSTYSSTYPIISKLSFFYCKLSPLIVLLFFIFCYKKLTLVKPIPINKLIINVIFPCLVITIISLYVLYFYNTDISDSGWSILKTISSNKHLLFGYYIAIFLGYYVWLFLFFISFIYLPFKSIR
>CP029129.1|AWF39191.1|4248_5715_+|colicin-pore-forming-domain-protein
MSKNNHSAETDHLSVTADRPSKGDLGSGPVGKGDGGDRNIISLSDPNASFSYTTSTIEGLEGLNFTVTVHGARIINPQNGHTTNNIEVDGKGNSVDYKKNNVQNNQLELPIPYNNKLARDRDLGRLTSRIRKDYFDLKNNKARVSIYNGHYIHTVTFDDAGNVQNISEEYIEKTYNRYSKGIPNEKKDRLEEVKRFAILGYKTEPSNILDYNVKIKEYEFIFTLNKLGFIEKFSKKIIKASQYESRQLNAFYKDLNIEQDEKKENLAKLMVVNAYQSYPQNKKFIQDAEKEALMGAADIITNTGEKISKHLGEKYKTIANEIASDLRNFQGKKLRSLSDALKMMEKINRNPNIKIKQADRVVLANAVRHVDTKILSENFQRLGKSFGVLGKVLSVEKLREKAAIGFETGNWKPLMLEVEAMIISGYATGIAISIAISFISSIASFLAIGALPTTLAIIATIMLISYLASLIDDKVVDKINNLLIPEAH
>CP029129.1|AWF39193.1|12255_12408_+|dnaJ-domain-protein
MNVQEALNIFGLSGELTEQDIKTAYKKAALKYHPDRNPLGAELMKAINAV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029129_1	1.1\|11351\|21\|CP029129\|CRISPRCasFinder	11351-11371	21	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11351-11371	0	1.0
CP029129_1	1.1\|11351\|21\|CP029129\|CRISPRCasFinder	11351-11371	21	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7079-7099	0	1.0
CP029129_1	1.1\|11351\|21\|CP029129\|CRISPRCasFinder	11351-11371	21	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	43125-43145	0	1.0
CP029129_1	1.1\|11351\|21\|CP029129\|CRISPRCasFinder	11351-11371	21	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2594-2614	0	1.0
CP029129_1	1.1\|11351\|21\|CP029129\|CRISPRCasFinder	11351-11371	21	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12749-12769	0	1.0
CP029129_1	1.1\|11351\|21\|CP029129\|CRISPRCasFinder	11351-11371	21	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	157-177	0	1.0
CP029129_1	1.2\|11395\|22\|CP029129\|CRISPRCasFinder	11395-11416	22	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	43080-43101	0	1.0
CP029129_1	1.2\|11395\|22\|CP029129\|CRISPRCasFinder	11395-11416	22	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2549-2570	0	1.0
CP029129_1	1.2\|11395\|22\|CP029129\|CRISPRCasFinder	11395-11416	22	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12704-12725	0	1.0
CP029129_1	1.2\|11395\|22\|CP029129\|CRISPRCasFinder	11395-11416	22	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	112-133	0	1.0
CP029129_1	1.2\|11395\|22\|CP029129\|CRISPRCasFinder	11395-11416	22	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11395-11416	0	1.0
CP029129_1	1.2\|11395\|22\|CP029129\|CRISPRCasFinder	11395-11416	22	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7123-7144	0	1.0
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	42923-42954	0	1.0
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2392-2423	0	1.0
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11542-11573	0	1.0
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12547-12578	0	1.0
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	36014-36045	0	1.0
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	42880-42899	0	1.0
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2349-2368	0	1.0
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11597-11616	0	1.0
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7325-7344	0	1.0
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12504-12523	0	1.0
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	35971-35990	0	1.0
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7270-7301	1	0.969
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_KX832926	Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence	42902-42921	1	0.95
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP026061	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence	2371-2390	1	0.95
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	11575-11594	1	0.95
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_CP021855	Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence	7303-7322	1	0.95
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MK941846	Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence	12526-12545	1	0.95
CP029129_2	2.2\|11597\|20\|CP029129\|CRISPRCasFinder	11597-11616	20	NZ_MF150117	Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence	35993-36012	1	0.95
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP043616	Lactobacillus buchneri strain MGB0786 plasmid unnamed2, complete sequence	9537-9568	6	0.812
CP029129_2	2.1\|11542\|32\|CP029129\|CRISPRCasFinder	11542-11573	32	NZ_CP039728	Bacillus sp. S3 plasmid unnamed, complete sequence	184320-184351	9	0.719

1. spacer 1.1|11351|21|CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

2. spacer 1.1|11351|21|CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

3. spacer 1.1|11351|21|CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

4. spacer 1.1|11351|21|CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

5. spacer 1.1|11351|21|CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

6. spacer 1.1|11351|21|CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

aattcatacgatgatcacgaa	CRISPR spacer
aattcatacgatgatcacgaa	Protospacer
*********************

7. spacer 1.2|11395|22|CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

8. spacer 1.2|11395|22|CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

9. spacer 1.2|11395|22|CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

10. spacer 1.2|11395|22|CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

11. spacer 1.2|11395|22|CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

12. spacer 1.2|11395|22|CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

agttacaatatcaacacaaaaa	CRISPR spacer
agttacaatatcaacacaaaaa	Protospacer
**********************

13. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

14. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

15. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

16. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

17. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatttcaaacagc	Protospacer
********************************

18. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

19. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

20. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

21. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

22. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

23. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 0, identity: 1.0

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacact	Protospacer
********************

24. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 1, identity: 0.969

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
acgaaataattactgtacaaatatcaaacagc	Protospacer
********************** *********

25. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_KX832926 (Providencia rettgeri strain 16pre36 plasmid p16Pre36-1, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

26. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_CP026061 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

27. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_CP029129 (Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

28. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_CP021855 (Proteus mirabilis strain AR_0156 plasmid unitig_3, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

29. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_MK941846 (Proteus mirabilis strain PM1157 plasmid pOXA-23, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

30. spacer 2.2|11597|20|CP029129|CRISPRCasFinder matches to NZ_MF150117 (Proteus mirabilis strain A64421 plasmid pPM64421b, complete sequence) position: , mismatch: 1, identity: 0.95

attcgggatttacacacact	CRISPR spacer
attcgggatttacacacacc	Protospacer
*******************.

31. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_CP043616 (Lactobacillus buchneri strain MGB0786 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

acgaaataattactgtacaaatttcaaacagc-	CRISPR spacer
accaaataatttctgtacaaattt-gattagcg	Protospacer
** ******** ************ .* .***

32. spacer 2.1|11542|32|CP029129|CRISPRCasFinder matches to NZ_CP039728 (Bacillus sp. S3 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

acgaaataattactgtacaaatttcaaacagc	CRISPR spacer
tccgatcaattactttacaaaattcaaacaca	Protospacer
 * .* .******* ****** ********

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029133

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection