CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029128	Klebsiella oxytoca strain AR380 chromosome, complete genome	2 crisprs	cas3,DinG,WYL,DEDDh,csa3	0	7	7	0
CP029127	Klebsiella oxytoca strain AR380 plasmid unnamed1, complete sequence	0 crisprs	RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029128_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029128_1

1017005-1017512

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

8 spacers

The CRISPR arrays of CP029128_1

>merge|CP029128|1|1017005-1017512|CRISPRCasFinder,CRT,PILER-CR
TTACTGAACTGCCGGAACGGCAGTGAACCAATTCAAAAATGCCGATGCGATCGGTCATCCTTTCTAAGCTGCCTGTACGGCAGTGAACTGTACCGAATGGGTTACTCTGGTTAACCTGCATTTCTAAGCTGCCTGTACGGCAGTGAACTACTGAACTGCTGGAAATGGTTCTCGCGTTTCTTTCTAAGCTGCCTGTACGGCAGTGAACATTTCGTTAACAGTGGCGGAAAAAAACTCACTTTTCTAAGCTGCCTGTACGGCAGTGAACGCATTACCGCACTTCATATAATTTTCGAGGAATTTCTAAGCTGCCTGTACGGCAGTGAACTATTGCCTTCCACAGCGGCGTCCCGGGCCGTTTTTCTAAGCTGCCTGTACGGCAGTGAACTTTCTTTGACTACAAACTCCCGTTCTCTCTTTTTTCTAAGCTGCCTGTACGGCAGTGAACGATCTGAAAATCTCGTTCAAGTCGCCGACTCATTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP029128|1|1|1017005-1017512|CRISPRCasFinder
TTACTGAACTGCCGGAACGGCAGTGAAC	CAATTCAAAAATGCCGATGCGATCGGTCATCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTACCGAATGGGTTACTCTGGTTAACCTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACTGAACTGCTGGAAATGGTTCTCGCGTTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCGTTAACAGTGGCGGAAAAAAACTCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCATTACCGCACTTCATATAATTTTCGAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTGCCTTCCACAGCGGCGTCCCGGGCCGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCTTTGACTACAAACTCCCGTTCTCTCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCTGAAAATCTCGTTCAAGTCGCCGACTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP029128|1|1|1017005-1017512|CRT
TTACTGAACTGCCGGAACGGCAGTGAAC	CAATTCAAAAATGCCGATGCGATCGGTCATCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTACCGAATGGGTTACTCTGGTTAACCTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACTGAACTGCTGGAAATGGTTCTCGCGTTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCGTTAACAGTGGCGGAAAAAAACTCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCATTACCGCACTTCATATAATTTTCGAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTGCCTTCCACAGCGGCGTCCCGGGCCGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCTTTGACTACAAACTCCCGTTCTCTCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCTGAAAATCTCGTTCAAGTCGCCGACTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP029128|1|1|1017065-1017512|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTACCGAATGGGTTACTCTGGTTAACCTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TACTGAACTGCTGGAAATGGTTCTCGCGTTTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTCGTTAACAGTGGCGGAAAAAAACTCACT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCATTACCGCACTTCATATAATTTTCGAGGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTGCCTTCCACAGCGGCGTCCCGGGCCGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCTTTGACTACAAACTCCCGTTCTCTCTTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GATCTGAAAATCTCGTTCAAGTCGCCGACTCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029128.1\|AWF38487.1\|1007190_1009137_-\|macrolide-export-ATP-binding/permease-protein-MacB	unknown	unknown	gnl\|CDD\|182528
CP029128.1\|AWF38297.1\|1016021_1016957_+\|NADH-oxidoreductase-hcr	unknown	unknown	gnl\|CDD\|236735
CP029128.1\|AWF34045.1\|1009133_1010249_-\|macrolide-specific-efflux-protein-MacA	unknown	unknown	gnl\|CDD\|183211
CP029128.1\|AWF33992.1\|1012463_1013159_+\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
CP029128.1\|AWF34766.1\|1013282_1014182_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225287
CP029128.1\|AWF33509.1\|1021184_1022618_+\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|187556
CP029128.1\|AWF35328.1\|1014325_1015978_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP029128.1\|AWF35859.1\|1006249_1006453_-\|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein	unknown	unknown	gnl\|CDD\|225038
CP029128.1\|AWF36144.1\|1023724_1024555_-\|N-acetylmuramoyl-L-alanine-amidase-AmiD	unknown	unknown	gnl\|CDD\|225567
CP029128.1\|AWF38190.1\|1006891_1007122_+\|cold-shock-domain-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP029128.1\|AWF34829.1\|1022714_1023728_+\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223528
CP029128.1\|AWF33585.1\|1024551_1024875_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179490
CP029128.1\|AWF35460.1\|1018299_1020018_+\|pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
CP029128.1\|AWF39017.1\|1010423_1012082_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226121
CP029128.1\|AWF38616.1\|1020172_1021174_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
CP029128.1\|AWF38574.1\|1024992_1025508_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182526
CP029128.1\|AWF38420.1\|1010334_1010451_-\|hypothetical-protein	unknown	unknown	unknown
CP029128.1\|AWF35347.1\|1026580_1027312_+\|lysine-arginine-ornithine-binding-periplasmic-family-protein	unknown	unknown	gnl\|CDD\|184969
CP029128.1\|AWF33833.1\|1025832_1026561_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|182980
CP029128.1\|AWF37701.1\|1017712_1018147_-\|doxX-family-protein	unknown	unknown	gnl\|CDD\|311556

Protein	Function_ID	Function_description	E-value
CP029128.1\|AWF38487.1\|1007190_1009137_-\|macrolide-export-ATP-binding/permease-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP029128.1\|AWF38297.1\|1016021_1016957_+\|NADH-oxidoreductase-hcr	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
CP029128.1\|AWF34045.1\|1009133_1010249_-\|macrolide-specific-efflux-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP029128.1\|AWF33992.1\|1012463_1013159_+\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.16082e-144
CP029128.1\|AWF34766.1\|1013282_1014182_+\|hypothetical-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.13535e-115
CP029128.1\|AWF33509.1\|1021184_1022618_+\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.16362e-130
CP029128.1\|AWF35328.1\|1014325_1015978_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP029128.1\|AWF35859.1\|1006249_1006453_-\|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	1.775e-31
CP029128.1\|AWF36144.1\|1023724_1024555_-\|N-acetylmuramoyl-L-alanine-amidase-AmiD	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	1.08202e-104
CP029128.1\|AWF38190.1\|1006891_1007122_+\|cold-shock-domain-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.34932e-46
CP029128.1\|AWF34829.1\|1022714_1023728_+\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	6.06704e-55
CP029128.1\|AWF33585.1\|1024551_1024875_-\|hypothetical-protein	gnl\|CDD\|179490	PRK02877, PRK02877, hypothetical protein; Provisional.	6.50282e-67
CP029128.1\|AWF35460.1\|1018299_1020018_+\|pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
CP029128.1\|AWF39017.1\|1010423_1012082_-\|hypothetical-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP029128.1\|AWF38616.1\|1020172_1021174_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
CP029128.1\|AWF38574.1\|1024992_1025508_+\|hypothetical-protein	gnl\|CDD\|182526	PRK10533, PRK10533, putative lipoprotein; Provisional.	1.07215e-114
CP029128.1\|AWF33833.1\|1025832_1026561_+\|ABC-transporter-family-protein	gnl\|CDD\|182980	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional.	0
CP029128.1\|AWF35347.1\|1026580_1027312_+\|lysine-arginine-ornithine-binding-periplasmic-family-protein	gnl\|CDD\|184969	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein.	2.82316e-174
CP029128.1\|AWF37701.1\|1017712_1018147_-\|doxX-family-protein	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	1.15049e-11

>CP029128.1|AWF38297.1|1016021_1016957_+|NADH-oxidoreductase-hcr
MQVHHIHQETPDVWTISLLCHDYYPYRAGQYALVSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGAGSQWLTRDVKRGDYIWLSDAMGDFTCDDKADDKFLMLAAGCGVTPIMSMRRWLAKYRPQADVQVIFNVRSPQDVIFAEEWRQYPVTLVAENNATHGFVAGRLTTELLQSVPDLASRTVMTCGPAPYMDLVEQEVKALGATRFFKEQFFTPVAVAATSGLKFTKLQPAKTFYAPVGTTLLEALESNKVPVTVACRAGVCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCQPLGDLVLA
>CP029128.1|AWF35328.1|1014325_1015978_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIASLQGLSAWALKAREYGIIDHDVDSFAPRAFFSTLTNVNFDSPRIVGYARQAIAMREALKAQCLNIDAHATVNNPMAAVQLASDDLGDLQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVNHLEGEDFAPVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLDFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFFTPDLLAVLNEKFGLRSVTTVEEDMKQLLSA
>CP029128.1|AWF34766.1|1013282_1014182_+|hypothetical-protein
MFSGLLIILLPLIAGYLIPLHRPSALKLIARLLSWIVYVILFFMGISLAFLDNLASNLLSILHYAAVSVVIILLCNIAALMWLEQKMPWQNHHRQEKLPSRLAMALESLQLCGVVLIGFLIGLSGLPFLQHATEASEYTLIFLLFLIGIQLRNNGMTLRQIVLNRRGMMVAVVVMVSSLLGGIINAFILDLPLKTGLAMASGFGWYSLSGILLTESYGPVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIVPAAIVHGFILSLLVPILMAFFSA
>CP029128.1|AWF33992.1|1012463_1013159_+|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKEVIGYIIAQVVGGIIAAAILYIVASGKAGFDAAASGFASNGYGEHSPGGFSMLSAIVIEIVLTCGFLLVIHGATDKNAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALQQLWLFWVMPIIGGILGGVLYRTLLEKRS
>CP029128.1|AWF39017.1|1010423_1012082_-|hypothetical-protein
MHLERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPEFDLYHFVREDFWFPPGDVQGRERHLHIILTFRENEPGRHRVRRYRPLSNCWVPCDDGYQRVFYRLEGELADDDSVMTLRSFINGEGEALEVENIDELARHLVRLMPVLRLRDARFMRRIHNGTVPHSPQIEITARQLDFLSRELVHHPQNLTDGQIRQGLSAMVQLLEHYFAEQSSAQSRHRLMRRHSHDEQRSWRYLDIINRMIDKPGGRSHRVILLGLFSTLLQAKGTVRLDRDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEHVCRLVRESSRVSAWRLGPGGMNAEDSRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGVKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNDDKMLERDHLTALPAMDMEHFMYRQGFDDVYHRVAQLPMNIPMNMRRVITKAIHRSSKPDLAIEVAMEAGRRGVDAIPTLLKKMFSRVLWLARGRAD
>CP029128.1|AWF38420.1|1010334_1010451_-|hypothetical-protein
MAGARAGGLAATNVYLFVPGAIPARLHLHVTQPQLNKN
>CP029128.1|AWF34045.1|1009133_1010249_-|macrolide-specific-efflux-protein-MacA
MKLNGKRRKIWWLLAIVVLALAIWGWRILNAPLPQYQTLVVRKGDLQQSVLATGKLDALKKVDVGAQVSGQLKTLRVEIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQLNQARAERKLSAATLARQQQLAQRQLVSRQDLDTAATDLAVKEAQIGTIEAQVKRNQATLDTAKTNLDYTKILAPMSGEVTQITTLQGQTVIAAQQAPNILTLADLSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGTLKDILPTPEKVNDAIFYYARFEVPNPQGILRLEMTAQVHIQLSEVKNVITIPLSALGEAIGDNRYHVRLLRTGEVKEREIVIGARNDTDVAVVKGLEEGDEVIIGEGAAGAAK
>CP029128.1|AWF38487.1|1007190_1009137_-|macrolide-export-ATP-binding/permease-protein-MacB
MTALLELRDIRRSYPSGDGNVEVLKGITLSIAAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVARLNGDELARLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGAERKARLARAHELLVRLGLGDRAEYQPSQLSGGQQQRVSIARALMNGGEVILADEPTGALDSRSGEEVMGILHQLKAQGHTVIIVTHDPQVAAQAERVIEIHDGEIVRNPPALSSAQGGALRQRTAAEPSAWRQFSSGFREALVMAWRAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAIGTNTIDVYPGKDFGDDDPRYQQSLKYDDLLAIQKQPWVSSATPAVSKSLRLRADNIDVAASAEGVGAQYFNVYGMTFSEGNTFNELQLNSRAQVVVLDSNARRQLFPHKARVVGEVILVGNMPATVIGVADEKQSMFGSSKILRVWLPYTTMAGRVMGQSWLNSITVRVNEGYDSALAEQQLLRLLELRHGKKDVFTWNMDSILKTAERTTHTLQLFLTLVAVIALVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGVTLSLLIAFVLQLFLPGWEIGFSPLALLTAFLCSTLTGVLFGWLPARNAARLDPVDALARE
>CP029128.1|AWF38190.1|1006891_1007122_+|cold-shock-domain-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQAVRFDVHQGPKGNHASVIVPVEAEETETAA
>CP029128.1|AWF35859.1|1006249_1006453_-|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein
MEFVIDVLQKFFSYDVERATQLMLTVHYQGKAICGVFTAEVAETKVSMVNQYARENEHPLLCTLEKA
>CP029128.1|AWF37701.1|1017712_1018147_-|doxX-family-protein
MVKSLLNGVNKLLSHDDFGKLLLRLAVGGLMLFHGLHKLFDGVGGISSMLVAKGLPGFIAYGVLAGEVVAPCLLIVGILTRPAALVLAFTMVVAWLMVGTGKTFALDAVGAWAIESLVYFFVGALAIAFLGAGRYSIGGTSAWR
>CP029128.1|AWF35460.1|1018299_1020018_+|pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNRMGTIDWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVINRGVSVVVLPGDVALKPAPESASSHWYHAPLPQVTPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAAKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLSALLPHLEEKTDRKFLDKALEHYRDARKGLDDLAKPSDKTLHPQYLAQRISHFADDDAIFTCDVGTPTVWAARYLQMNGKRRLIGSFNHGSMANAMPQAIGAKATAPDRQVVAMCGDGGFSMLMGDFLSLAQMKLPVKIVIFNNSVLGFVAMEMKAGGYLTDGTELHATNFARIAEACGIKGIRVEKAADVDQALQTAFSTDGPVLVDVVVASEELAMPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>CP029128.1|AWF38616.1|1020172_1021174_+|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMREAMMAAPVGDDVYGDDPTVNELQRFAADLAGKEAAIFLPTGTQANLVALLSHCQRGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAADGSLPLDKVAAKIKPDDIHFAPTRLLSLENTHNGKVLPREYLKDAWEFTRQRGLGLHVDGARIFNAVVEYGCALREITRYCDSFTICLSKGLGAPVGSLLVGSEAYIRRAIRWRKMVGGGMRQAGILAAAGLYALQNNVERLKEDHDNAAWMAEQLRAAGAEVMRHDTNMLFVRVGEARAAALGEYLRERGVLINASPIVRLVTHIDVNRQQLAEVVSHWQTFLNR
>CP029128.1|AWF33509.1|1021184_1022618_+|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein
MSQRILVLGASGYIGQHLVTRLSEQGFTVLAAARQIDRLKKQHLPGVECYSLDLNQPDALPALLAQVDTVYYLVHGMGEGGDFIRHERQVALNVRDALRKTPVNEVIFLSSLQVAEEEQSDHLRARQITGDLLRESGIPVAEVRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLYYLLQLLNHPAAEHRIFEAAGPEILSYQQQFIRFMAVSGKRRPLIPIPFPTRWISVWFLNIITSVPSTTARALIQGLKHDLIADDRALRALIPQPLIAFDEAVRRTLKEEEQLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVNTSASLAALWKVVNQIGGKEGYFFGNALWKTRGAMDLLVGHRLAKGRPENEYLQTGDAVDSWKVIIVEPEKQLTLLFGMKAPGLGRLSFTLRDKGDHRELDVRAWWHPHGMPGLCYWLLMIPAHLFIFRGMARRIAHLAEQITIK
>CP029128.1|AWF34829.1|1022714_1023728_+|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein
MKVLVTGATSGLGRNAVEYLRNRGISVRATGRNEAMGKLLSKMGAEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFVHISSPSLYFDYHHHRDVQEDFRPQRFANEFARSKAASEDVIHLLAQANPNTRFTILRPQSLFGPHDKVFIPRLAQMMQHYGSVLLPRGGSALVDMTYYENAVHAMWLASQPQCDLLPSARAYNITNGEPQTLHSIVLKLIDELGIKCRIRSVPYPMLDIIARSMERFGNKSAKEPAFTHYGVSKLNFDFTLDISRAQQELGYQPVVNMDEGIIRTAAWLKDHGKLHY
>CP029128.1|AWF36144.1|1023724_1024555_-|N-acetylmuramoyl-L-alanine-amidase-AmiD
MKRCRAGVLLALLLAGCASEKGIIDRDGYQLDTRHPAQAAYPRIKVLVIHYTADDFDVSLATLTDNQVSSHYLIPEKPPLHGGKPRIWQLVPEEDLAWHAGVSFWRGSTRINDTSIGIELENRGWQKTAGVKSFTPFNPAQIDALIPLAKDIIARYQILPQNVVAHADIAPQRKDDPGPLFPWHRLAEQGIGAWPDARRVAFYLQGRPSYEPVDTAELLDVLARYGYQVTPEMTPAQQKRVIMAFQMHFRPARWDGVADAQTLAMAEALLEKYGRG
>CP029128.1|AWF33585.1|1024551_1024875_-|hypothetical-protein
MQFSTTPTLEGQPIIEYCGVVTGEAILGANVFRDFFASIRDIVGGRSGAYEKELRKAREIAFEELSEQAKALGANAVVGIDIDYETVGKDSSMLMVSVSGTAVKTRR
>CP029128.1|AWF38574.1|1024992_1025508_+|hypothetical-protein
MRYKVLALVLPCALALSACTTVTPAYKDNGTRSGPCIEGGPDDVAQKFYDYQLQNRNSDLTALRPYLSDGLAKLLNDARQDPSNNALLQSNLFSSSSTPADSAEVASASTIPNRDARNIPLRVELKQGTQSWKDEVLMIQEGQCWAVDDVRYLGNNGHAPAGTLRQSLEKR
>CP029128.1|AWF33833.1|1025832_1026561_+|ABC-transporter-family-protein
MSIKLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLHIAGNHFDFTKAPSDKAIRELRQNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAGCFAHPQTDAFKNYLSH
>CP029128.1|AWF35347.1|1026580_1027312_+|lysine-arginine-ornithine-binding-periplasmic-family-protein
MKKVLIAALLAGMSLSATAAQTIRFATEASYPPFESIDANNKIVGFDVDLANALCKEIDATCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTTPYYENSALFVGQQGKFTSIDQLKGKKVGVQNGTTHQKFITDKHPEITTVPYDSYQNAKLDLQNGRIDAVFGDTAVVTEWLKSNPKLGAVGDKVTDKDYFGTGLGIALRQGNTELQQKFNAALEKVKSDGTYQSIYNKWFQK

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Crispr_ID: CP029128_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029128_3

5041155-5041242

Orphan

I-E

Consensus_repeat	Method
AGAGAGTTCCCCGCGCGAGCGGGGATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029128_3

>merge|CP029128|3|5041155-5041242|CRISPRCasFinder
AGAGAGTTCCCCGCGCGAGCGGGGATAAACCGGGCGCGCCAGGCCCTGGAAAATCTCAGACAGAGAGTTCCCCGCGCGAGCGGGGATA

>CP029128|3|3|5041155-5041242|CRISPRCasFinder
AGAGAGTTCCCCGCGCGAGCGGGGATA	AACCGGGCGCGCCAGGCCCTGGAAAATCTCAGAC
AGAGAGTTCCCCGCGCGAGCGGGGATA

Protein	Signature genes	Signature genes Name	Protein_function
CP029128.1\|AWF34337.1\|5034807_5035137_+\|hypothetical-protein	unknown	unknown	unknown
CP029128.1\|AWF38891.1\|5036778_5038122_-\|permease-family-protein	unknown	unknown	gnl\|CDD\|225161
CP029128.1\|AWF36246.1\|5042242_5043043_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
CP029128.1\|AWF35106.1\|5047058_5048078_+\|helix-turn-helix-family-protein	unknown	unknown	gnl\|CDD\|380498
CP029128.1\|AWF34047.1\|5038124_5039936_-\|adenine-deaminase-2	unknown	unknown	gnl\|CDD\|223933
CP029128.1\|AWF33816.1\|5043059_5043176_-\|hypothetical-protein	unknown	unknown	unknown
CP029128.1\|AWF36286.1\|5027287_5031025_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379270
CP029128.1\|AWF37094.1\|5043191_5044244_+\|fructose-bisphosphate-aldolase-class-1	unknown	unknown	gnl\|CDD\|236431
CP029128.1\|AWF34462.1\|5040059_5040983_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|223656
CP029128.1\|AWF35508.1\|5033346_5034456_+\|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein	unknown	unknown	gnl\|CDD\|183270
CP029128.1\|AWF38207.1\|5046067_5046796_-\|ribitol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|226674
CP029128.1\|AWF34785.1\|5035196_5035496_-\|nickel/cobalt-homeostasis-protein-RcnB	unknown	unknown	gnl\|CDD\|227742
CP029128.1\|AWF34902.1\|5048100_5049042_-\|putative-sugar-binding-domain-protein	unknown	unknown	gnl\|CDD\|367868
CP029128.1\|AWF37672.1\|5035683_5036604_+\|lysR-substrate-binding-domain-protein	unknown	unknown	gnl\|CDD\|176114
CP029128.1\|AWF36646.1\|5023516_5027275_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379270
CP029128.1\|AWF37042.1\|5049248_5050616_+\|mannitol-dehydrogenase-Rossmann-domain-protein	unknown	unknown	gnl\|CDD\|223324
CP029128.1\|AWF34652.1\|5044429_5046037_-\|FGGY-pentulose-kinase-family-protein	unknown	unknown	gnl\|CDD\|212663
CP029128.1\|AWF36816.1\|5041472_5042246_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
CP029128.1\|AWF33842.1\|5050625_5052089_+\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
CP029128.1\|AWF38272.1\|5031161_5033120_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655

Protein	Function_ID	Function_description	E-value
CP029128.1\|AWF38207.1\|5046067_5046796_-\|ribitol-2-dehydrogenase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	1.85661e-76
CP029128.1\|AWF38891.1\|5036778_5038122_-\|permease-family-protein	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	3.16844e-115
CP029128.1\|AWF36246.1\|5042242_5043043_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.64176e-160
CP029128.1\|AWF35106.1\|5047058_5048078_+\|helix-turn-helix-family-protein	gnl\|CDD\|380498	cd06274, PBP1_FruR, ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type 1 periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	4.07566e-106
CP029128.1\|AWF34047.1\|5038124_5039936_-\|adenine-deaminase-2	gnl\|CDD\|223933	COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism].	0
CP029128.1\|AWF36286.1\|5027287_5031025_-\|hypothetical-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	8.27693e-60
CP029128.1\|AWF37094.1\|5043191_5044244_+\|fructose-bisphosphate-aldolase-class-1	gnl\|CDD\|236431	PRK09250, PRK09250, class I fructose-bisphosphate aldolase.	0
CP029128.1\|AWF34462.1\|5040059_5040983_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.84641e-38
CP029128.1\|AWF35508.1\|5033346_5034456_+\|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein	gnl\|CDD\|183270	PRK11670, PRK11670, iron-sulfur cluster carrier protein ApbC.	0
CP029128.1\|AWF34785.1\|5035196_5035496_-\|nickel/cobalt-homeostasis-protein-RcnB	gnl\|CDD\|227742	COG5455, COG5455, Predicted integral membrane protein [Function unknown].	1.88929e-21
CP029128.1\|AWF34902.1\|5048100_5049042_-\|putative-sugar-binding-domain-protein	gnl\|CDD\|367868	pfam04198, Sugar-bind, Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.	1.24536e-86
CP029128.1\|AWF37672.1\|5035683_5036604_+\|lysR-substrate-binding-domain-protein	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.3122e-64
CP029128.1\|AWF36646.1\|5023516_5027275_-\|hypothetical-protein	gnl\|CDD\|379270	pfam13569, DUF4132, Domain of unknown function (DUF4132). This domain might be involved in the biosynthesis of the molybdopterin cofactor in E.coli.	1.48306e-58
CP029128.1\|AWF37042.1\|5049248_5050616_+\|mannitol-dehydrogenase-Rossmann-domain-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	3.05617e-135
CP029128.1\|AWF34652.1\|5044429_5046037_-\|FGGY-pentulose-kinase-family-protein	gnl\|CDD\|212663	cd07782, FGGY_YpCarbK_like, Yersinia Pseudotuberculosis carbohydrate kinase-like subgroup; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of the uncharacterized Yersinia Pseudotuberculosis carbohydrate kinase that has been named glyerol/xylulose kinase and similar uncharacterized proteins from bacteria and eukaryota. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
CP029128.1\|AWF36816.1\|5041472_5042246_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	3.24588e-123
CP029128.1\|AWF33842.1\|5050625_5052089_+\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
CP029128.1\|AWF38272.1\|5031161_5033120_-\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0

>CP029128.1|AWF34462.1|5040059_5040983_+|lysR-substrate-binding-domain-protein
MTEPWQRLPALSLKQIQYFVTLAQLRHFTDTANRLAISQPALSSALRQIETVLGGKLVNRTASAVTLTELGAAILPHARRVLSVAQLAFQDMQQIVEAGGDGTVRIGLVPSVSSLLFPLLPQTLAQAFPRLRVEFHDQTNDALFCELQSGKIDFAVGAIDSSLPPELQVYPLREDPFVAVLHGGDPLAGQPHLPWKLLAGRDIAVFSKGNIQRLVGALAESHRLTLNTRYQVDYIETLYGLVRSRLAVAILPELYTTHLQDPALKVAQLQQPALTRTVALMRGPQPLPPLIEECFALLLSSLREVNL
>CP029128.1|AWF34047.1|5038124_5039936_-|adenine-deaminase-2
MSSSAETRRRAVQAARGESPFDLLLTDAQIVDMATGEIREADVGIVGETIASVHPRGSRSDALERRSLAGCFLSPGLMDTHVHLESSHLPPERYAEIVLAQGTTAVFWDPHELANVLGVEGVRYAVAASRHLPLQVMVAAPSSVPSTPGLEMSGADFAGAEMETMLAWPEVCGVAEVMDMHGVLHDSERMQEIVQAGLNSGKLIEGHARGLSGADLQAYLAAGVTSDHELTSADDALEKLRAGLTIEIRGSHPYLLPDIVNALKTLPHLSSQITVCTDDVPPDMLLEKGGIIALLNLLIEHGLPATDVLRFATLNAAIRLQRNDLGLIAAGRRADLVVFDSLSRLNAQEVYVAGKLIARDGALLQPIPSAAGVTPPRDTLQMPPLSPDDFILRVGAIRHGVARLRHIRGARFTQWGEVEVQVRDGRVQIPEGFSLIWVKHRHGRHQATPQIALLEGWGELRGAIATSYSHDSHNLVVLGRDADEMALAANRLIESGGGMALSQQGKILAHVAMPIAGMLSDLPAPELARQFRQLRDLSAEVADWEPPYRVFKAIEGTCLACNAGPHLTDLGLTDGSTRQIVEPLIDCREIPEHTEHNNKHQGA
>CP029128.1|AWF38891.1|5036778_5038122_-|permease-family-protein
MADNTLNSSAQGSWLERRFALYSRGSTLRTECLAGITGFLAAAYLLVVIPGLLAVGGMDKGAATTGTILVFVGGTLLMAFYANLPFIVGPGIGGSVLVGVTLAGSEGIGWQIGLGIACWSGILFFLLTKFGLREVVTRSVPQSIKLGLTASIGLFVAVLGFRNAGLVLANAKTNALMLGDFLSPGALVALCGLFLAIALQARKIPGSILWAILFATLVGIPMGVTRLPSSFIDMPHSLTPVLGQIDMLGALNIAFLPFLFVFFASEFFSTMGTTLAVGGEAGLLDEEGNMPHINRPFMVDSIAAAIGPWLGIPAATALIESSAAAEAGGKTGLTALSAAVMFLLMLLFTPVALMIPKEATAPALILIGLNMFSGLRKVDLANFTDGLPVLMMVMITLIANSFGTGIAGGLLFYVVIKTIAGKWREIPIGLWILAIPLVYYFATLVKH
>CP029128.1|AWF37672.1|5035683_5036604_+|lysR-substrate-binding-domain-protein
MLRLEDLALFVRAAALSSFSDAAREAGLQPAQVSAAIKRLETTLNIRLFARSTRSLRLTPEGEAWLPYATQMLDTLHAGLQKIRTPDDEVRGTLQIAVPSDLGRNLLLRVFRGFRQRHPALRLRILFSDHRTDVFKDPVDVAFRYGDNDDASFISLPVAPDNRRVLVASPGWIAENGEPQTLEELARHNALTYVLRGRAFDRWPLSREGKVHHVQVSGTIVSDDAEVIRRLAIAGEGIAYKSELDVGDDIRAGRLQVLLPHYQGDVVPLNMICPHRKQLSPAVRLLYEAVKEACEAVNSSALSAGR
>CP029128.1|AWF34785.1|5035196_5035496_-|nickel/cobalt-homeostasis-protein-RcnB
MLLGVLLACTSGAWAATGDGIQKYELDGVTADFKQFHIGDTVPPLYLTPEYNIKQWQQRNLPAPDAGTRWTYMGGSYVLITETEGKILKIYDGEIFYHR
>CP029128.1|AWF34337.1|5034807_5035137_+|hypothetical-protein
MNNIALIVKLRELLVIFMHSRTLPEKAADALRYCQENIPLADLPIGAYGEYCEIYEQIVFLSDDKSRTAPDDLLRSGGDLILSILMLYEQVAAYIAVEEFMHKQNRFNE
>CP029128.1|AWF35508.1|5033346_5034456_+|cobQ/CobB/MinD/ParA-nucleotide-binding-domain-protein
MSSQSQAKSPERLRAMVAGTLANFQHPTLKHNLTTLKALHHVAWLDETVHIEIQMPFVWNSAFEALKEQCSAELLRITGAKAIDWKLTHSIATLQRVKNQPGINGVKNIIAISSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMKFGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAQKLAEKYHTQLLGQLPLHITLREDLDKGTPTVVARPESEFTETYRQLADRVAAQLYWQGEVIPGEIAFRAV
>CP029128.1|AWF38272.1|5031161_5033120_-|methionine--tRNA-ligase
MLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFDISYDNYHSTHSDENRELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRESEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDAASFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGMLSAELADPALYKTFTDAAASIGEAWDSREFGKAIREIMALADVANRYVDEQAPWVVAKQEGRDADLQAICTMGLNMFRVLMTWLKPVLPQLAARAEAFLNSELSWEAIQQPLLGHKVNAFKALYNRIEMKQVEALVEASKEEVKALSAPVTGPLADDPIQDTITFDDFAKVDMRIALIENAEFVDGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQALIGRLTVMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDSGAQPGQQVK
>CP029128.1|AWF36286.1|5027287_5031025_-|hypothetical-protein
MKSFIYQDEKSHKFWAVKQQDNELHLSWGKVGTSGQSQIKTFADSATAAKAKQKLIGEKTRKGYAENTAAEKSPPQAVASQSNNRPWLADDAHIPLTEEIGWFAFPHRNRSRPFNTTPDGNQIWQRITRNDKAEFRPSDYHFTSPAWEQAYAELHQRIKHNQSTGSLLSEAALLGKMGYYSGDLIDLFVTQYGLETTVEIACHTLQVACKYDDDLKKIVVCSDLPVNKTEYLPDWLPRLCHHLSLAPEEEWLRCVKKLIAAIPELSPAMQPFVALMLPERPDIANEIALRFAAEEIPAMAWLKMVVDAPSALITLEKYPLPPLYSHFLPYVATLIANQGMIGVSQLVNDLDEKEASTQLPELEATDYFTKWLAKTNHPDALKILILGAGNKNKRLGYLSKASQKYPHAAIAAYASLLTSYEDPIWRKALTVLISAEPARVEQVLPWIDAHAAETLTATRPHSDSSAEYASPETLPEILVSPPWLKQNQKSTSPVFKLSILPVTSTLSLTPAITEELTGYDYSDYHCQFSYADLPPFESYHWEKVTEPFTPEQNFLWRLGFEKWQQLTPGTSQKVPIPQSAVTALQCADYATLINEFHQYTGKQYSQWKLYLLAWMPREQALALLDALADEPHKGEEGILPIFGIDALPIFVRYLKHDRQSLWPFTPYCGTTDLALPMAQNFSRKKTLREDARSWLLEYPEHAIAGLLPAALGKACKDRDDAQQALRLLAENNHRSLITQIAQRYQQPEIIAALGAFLDAGDFHDFPTKIQPLPEFYQFALWRRPQLKSSGLPLPDNAMRYLGDMLNFPREVKLYTGLNTVKSICTPTSLANFAWDLFNAWIEAGGPSKANWAFTTLAFFGNDDTARALTPLIRAWPGESQHQRAALGLDILAEIGSDIALMLLNGIAKKIKFAALQENAQNKIKQIAEQRELTIAELEDRLAPDLGLDDNGTLVLDFGPRRFTVSFDEALKPFVRDESGRRLKDLPKPNKSDDETLAAAAVNRYKSLKKDARTVATQQIMRLETAMCLRRRWTAEQFRLFLVDHPLVRHLTRRLIWGVYSQENVLLACFRVAEDNSYSDAEDNLFSLPEGQIGLPHVLEISAEDAAAFGQLYADYELLPPFRQLDRNHYRLTESENWATELTRWRGRQSQAGRIVGLERKGWQRIEDGGSICGMYKPAASGDIVLEVEPFSLLYGETGYDELIPLDNVKIVPAGDIYFGKPAFAFSTLDAIAASELINDIESLFD
>CP029128.1|AWF36646.1|5023516_5027275_-|hypothetical-protein
MKTFIYHDDKSHKFWAIEQQDNELHLSWGKVGTSGQKQIKTFADAAAASKAGQKLINEKAKKGYVENSAAEASMPAPQQTAASAGSPPWLKDDEPIILDPDYETNAYSNRRFTDEPLKPVNEDCTLWEMLKESEHWTPFFLTCLQHFDASACRREWQQALQEAMRRIKQQQSEGSLLSDTILTLARFVLHYPIRIDVWLDGIVQQRGVEYAVDLVIALQQVQMTDQTNSDPVTNKAIEDGYERLLMILRNGQSAQTSPLFAITLSHNITDLRFEHGFSKIDLHLRKHLSQADATTWQRCADKLIAALPSIAPRRRPLVAFLLPEKPEIANRLALELAPDNDFPELEWLNIVATDPQAVQQLARFRQLNLFTHYRTSERCIETLLREQSLAGLSRLTPLIHEYRIKRALVEVNHPQAMTLLMMDKNASDADHLDSFAKKHPEAALYALTQGLVNGKNAIHLRLLEQIVLGNPQALESAGPWLTAEQQQLLFNHFPQLVATEEIASPDDQPPVLRSPPWLAKKKKTAAVALTLQVLPLESMGPEPEPLQEEEVPTTAEVLRYLGFESFYFDRDNPAPERFDCKWGVSKTAISLLEKEDYESLLNTRQKYDYESYITLHMSILARLPEEKALSIWNAMTHLHLTGIDEVVHRFGLPTLPGLLRYARIAPKEAVPLAAMFAASEAAPLMARAFCQLKSLRDIAERWLLTYPEHAITGLLPAALGKSSKEQGDARMTLRFLVSSGHLPLMEQVARRYDQPEVMTALGEMLAADPLDNYPLKIAKLPEWCTPEVWHRPILHNGKALSDDAIRHLCTMLAFPREETLYPGIVQVQEVCTPRSLADFAWDLFQSWEIVSGSAKDNWGFTALGIFGNDDTVRRLTPLIRAWPGESQHKRATVGLDILAAIDSDIALMQLNGIALKIKFKALQEAAREKIKQIADKRELTIAELEDRLAPDLGLDDSGTLTLDFGPRRFTLGFDEALKPFVRDESGRRLKDLPKPGKSDDEPRAAEAVSRYRQLKKDVRTVASQQIMRLESAMCLRRRWTAEQFRLFLVDHPLVRHLTRRLVWGVYSQENVLLACFRVAEDNSYSDAQDNPICLPEGQIGLPHVLEIAAEDAAAFGQLFADYELLPPFRQLDRNAYRFSQAESETFDLQRWTGRKALSGRVVGLVSKGWQRGEVRDAGGVYTFYKPVDGGYVELEVFPGFTVGLSVDMVSKTQGISHIRLYKAGQRKMIYPFSSLDKIAASELINDIESLFD
>CP029128.1|AWF36816.1|5041472_5042246_+|hydroxyethylthiazole-kinase
MSDLLNPAHIAHLRHLFHRHSPLVHCMTNDVVQTFTANVLLAIGASPAMVIDPDEASQFAAIADALLINVGTLTVERAEAMRAAARSATQAGKPWTLDPVAVGALTLRTEFCRELLALQPAAVRGNASEIMALAGMTGGGRGVDTTDTAAAALPAAQALARQLNTVVAVTGEVDYVTDGQRIRMVTGGDPLMTRVVGTGCALSAVVAAAAAMPGDRLENVAAACGLMKLAGGKAAQQGGPGSFTPAFLDALYAGGDL
>CP029128.1|AWF36246.1|5042242_5043043_+|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQNTLGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLARYQIKNVVLDTVMLAKSGDPLLSASAVETLRQRLLPQVSLITPNLPEAAALLDAPHARTEQEMLEQGRALLGMGCGAVLMKGGHLDDAESPDWLFTREEERRFTAPRVQTKNTHGTGCTLSAALAALRPRYEDWGRTVAEAKGWLSAALAQADSLEVGHGIGPVHHFHAWW
>CP029128.1|AWF33816.1|5043059_5043176_-|hypothetical-protein
MPVETGMRFPNPIILGRLSLVPTQQIFQPGAYFFSIVC
>CP029128.1|AWF37094.1|5043191_5044244_+|fructose-bisphosphate-aldolase-class-1
MTDITQLLGKDADTLLQHRCMTIPADQLYLPGADYVDRVMVDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTEYDQTLYASVEQAFNMGAVAVGATIYFGSEQSRRQIEEISAAFERAHELGLVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAVNFGYTDDRVYSKLTSDNPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDGKVTIA
>CP029128.1|AWF34652.1|5044429_5046037_-|FGGY-pentulose-kinase-family-protein
MQSDTQHIIGVDVGSGSVRAGVFDLRGELLAHATREITLFRSAGSVVEQSSREIWQAVCYCIKTAVASAGVAPSSIAGIGFDATCSLVVIGDNDVPLAVGPSEDADRNIIVWMDHRATGQAEKINATGHAVLQYVGGKISPEMETPKILWLKENRPHIYQQARHFFDLADYLTWRSTGDLARSVCTVTCKWTYLAHEQRWDASYFRQIGLEELADEDFVRIGQRIVDPGTPCGDGLCATAAEEMGLPIGTPVAVGMIDAHAGGIGTVGVLNGAVNNMAYVFGTSSCTMTTTQEAVFVPGVWGPYYSAMVPGFWLSEGGQSAAGAAIDQLLSFHPAAAEAKSLAKARGVPLPVYLADSVLAKVDNPSAAVKLADGLHVVPEFLGNRAPLADPQAKAIIAGLGMERDLDNLMALYVAGLCGIGYGLRQIIDAQKACGIRSENIVISGGAGQHPLVRQLLADACGVSVVSTESSEPVLLGSAILGAVAGHIAPSLPEAMKQFTRVDKTYRCVEQFSADHQRRYEAYKMLQHTARLIRE
>CP029128.1|AWF38207.1|5046067_5046796_-|ribitol-2-dehydrogenase
MNTSLSGKVAAITGAASGIGLECARTLLGAGAKVVLIDREGEKLNKLVAELGENAFALQVDLMQADQVDNLLQGILQLTGRLDIFHANAGAYIGGPVAEGDPDVWDRVLHLNTNAAFRCVRSVLPHLIAQKSGDIIFTSSIAGVVPVIWEPIYTASKFAVQAFVHTTRRQVSQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPIEVAESVLFMVTRSKNVTVRDIVILPNSVDL
>CP029128.1|AWF35106.1|5047058_5048078_+|helix-turn-helix-family-protein
MTQVGKMKKITIYDLAELSGVSASAVSAILNGNWKKRRISAKLAEKVTRIAEEQGYAINRQASMLRSKKSRVIGMIIPKYDNRYFGSVAERFEEMARERGLLPIITCTRRSPELELEAVKAMLSWQVDWVVATGATNPDKISALCQHAGVPTVNLDLPGTIAPSVISDNYGGAKALTHKILANSARRRGEMAPLTFIGGRSSDHNTSERLRGFHDAHREQGLSVPQANILAPGYSKGKVEACLQERFGTAKVPLQGIFVNSTISLEGVVRWLSQAGLTGSEQPPMGCFDWDPFVYLLGHDIDMVQQDVPAMLEAVFTIIDSGDAGQQRIEIPPLLMSSS
>CP029128.1|AWF34902.1|5048100_5049042_-|putative-sugar-binding-domain-protein
MSKEDDIRLDQKVRAAWMYYIAGQNQSEIASQLGTSRPVVQRLIAAAKEEGIVSIGLHHPVANCLDYALLLQEKYRLIECNIVPAFSEESTLDSVSFGCYQLMARYLQDDKEKIIGLGSGLTLKKALQRIDFDSQNTRCVALISAMDADGQCNYYDDVPLLLTSKIKAKYYQWPAPRYAQTQEEYDMWCTSRLFRSVSAVARQADVIFVGIGPLGTQSPIFKDGFINQAQMDEVTAQGGIGEIMGRFIDAEGGVVDSEINRMITSYDIRQNQCPRIAVACGEYKRPAILAALKGGWINGLVTDEHTARWLLTR
>CP029128.1|AWF37042.1|5049248_5050616_+|mannitol-dehydrogenase-Rossmann-domain-protein
MNNQFTWLHIGLGSFHRAHQAWYLHRLIASGDKRWHIAAGNIRNDAEQVVQALAAQGGRYVLETVSPEGEREYEEITSIQKLLPWQAGLKPLINEGANPQTKVIAFTVTEGGYYLNTRHKLETSNPDLQADLAGECKTIYGTIARILEKRMADNAGPLTLLNCDNVRHNGERFHDGMVEFLQLTGKQAVIDWMAANTTCPNTMVDRITPRPAADLPARVKAQTGIDDSAPVMGETFIQWVVENHFRDERPNLEAVGVEMVASVIPYEEAKIRILNSSHSCIAWAGTLIGQQYIHESTLTDFIYAIADRYVTEDVIPCLGDNGIDLPTYRDVVLKRFTNPYIQDTNQRVAADGFSKIPAMIAPTLQECYQRGARPEATAMLPALFFVFMEQWHKGSLPYEYQDGILDAQAVHQMFEASDPLALYARDKALFGELAENADFLALMREKVAAVYTLIN
>CP029128.1|AWF33842.1|5050625_5052089_+|xylulokinase
MYLGIDLGTSEVKALVIDENNEVIASHSAPLSIQRPHPHWSEQSPQSWWEATEYLMTTLREKCAQHWPAIKAIGLSGQMHGAVLLDVGGEVIRPAILWNDTRCAAECAELEEMAPELHQVAGNLAMPGFTAPKLLWVRRHEPEHFQRTATVLLPKDYLRYRMTGKKVSDMSDAAGTLWLDVAKRDWSDSLLDKCGLSRSQMPTLVEGCEVSATLDPQVAERWGLNASVAVAGGGGDNAVSAIGVGAVSPGDAFISLGTSGVLFVVTDAYRPAPQSAVHAFCHVLPNLWHQMSVMLSAASCLQWFCRLAGTTEVALLEEIAELSEEEKAHAPFFLPYLSGERTPHNDPDARGMFWGMTHSSLRAQLGYAVLEGVSFGINDGLQVLKESGTQIEQCSLVGGGARSPFWAQLLADILDMPVVTHKGGETGGALGAARLACLAAGKPITAVCEKPEIWQTWRADPVRHQTLMRRYAQFKALYLNDLNYRQH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029128_2	2.1\|1067439\|46\|CP029128\|CRISPRCasFinder	1067439-1067484	46	MK416007	Klebsiella phage ST405-OXA48phi1.2, complete genome	6624-6669	2	0.957
CP029128_1	1.5\|1017273\|32\|CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017273-1017304	32	NC_029094	Pseudoalteromonas phage H101, complete genome	24076-24107	7	0.781
CP029128_3	3.1\|5041182\|34\|CP029128\|CRISPRCasFinder	5041182-5041215	34	NC_022437	Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence	33921-33954	7	0.794
CP029128_1	1.3\|1017153\|32\|CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017153-1017184	32	NZ_CP049813	Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence	30958-30989	8	0.75
CP029128_1	1.4\|1017213\|32\|CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017213-1017244	32	AP018320	Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome	114499-114530	8	0.75
CP029128_1	1.8\|1017453\|32\|CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017453-1017484	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	2049016-2049047	9	0.719
CP029128_1	1.6\|1017333\|32\|CP029128\|CRISPRCasFinder,CRT,PILER-CR	1017333-1017364	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1755665-1755696	11	0.656

1. spacer 2.1|1067439|46|CP029128|CRISPRCasFinder matches to MK416007 (Klebsiella phage ST405-OXA48phi1.2, complete genome) position: , mismatch: 2, identity: 0.957

ggattcggctcttgggccgtttccattcggctcttgggacgaatgc	CRISPR spacer
ggattcggctcatgagccgtttccattcggctcttgggacgaatgc	Protospacer
*********** **.*******************************

2. spacer 1.5|1017273|32|CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NC_029094 (Pseudoalteromonas phage H101, complete genome) position: , mismatch: 7, identity: 0.781

gcattaccgcacttcatataattttcgaggaa	CRISPR spacer
ccattaccgcacttgatataattttataaata	Protospacer
 ************* **********  *.. *

3. spacer 3.1|5041182|34|CP029128|CRISPRCasFinder matches to NC_022437 (Pseudomonas fluorescens R124 plasmid pMP-R124, complete sequence) position: , mismatch: 7, identity: 0.794

aaccgggcgcgccaggccctggaaaatctcagac	CRISPR spacer
aacgctgcgcgcaaggcgctggaaaatctcaggg	Protospacer
***   ****** **** **************.

4. spacer 1.3|1017153|32|CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049813 (Monaibacterium sp. ALG8 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tactga--actgctggaaatggttctcgcgtttc	CRISPR spacer
--atgaccgctgctggaaatgggtcgcgcgttat	Protospacer
   ***  .************* ** ****** .

5. spacer 1.4|1017213|32|CP029128|CRISPRCasFinder,CRT,PILER-CR matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 8, identity: 0.75

atttcgttaacagtggcggaaaaaaactcact	CRISPR spacer
acactgttaacagtggtggaacaaaactatct	Protospacer
*. ..***********.**** ******  **

6. spacer 1.8|1017453|32|CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.719

gatctgaaaatctcgttcaagtcgccgactca	CRISPR spacer
aattccaaactttcgttcaagtcgccgacggg	Protospacer
.**.. *** *.*****************  .

7. spacer 1.6|1017333|32|CP029128|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

tattgccttccacagcggcgtcccgggccgtt	CRISPR spacer
gggccgcttccacagcggcgttcagggccagg	Protospacer
 . .  ***************.* *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

388074 : 406514

Klebsiella_phage(28.57%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF34434.1\|388074_391446_-	hypothetical protein	Q6UAW1	Klebsiella_phage	4.0e-136	48.0
AWF34023.1\|391660_395203_-\|tail	phage tail family protein	Q6UAW1	Klebsiella_phage	0.0e+00	64.0
AWF34082.1\|395212_395668_-	putative gp20	K7P6V1	Enterobacteria_phage	4.1e-44	63.6
AWF38672.1\|395692_395878_+	hypothetical protein	NA	NA	NA	NA
AWF36503.1\|395942_396656_-	nlpC/P60 family protein	Q6UAW4	Klebsiella_phage	6.6e-105	70.3
AWF35821.1\|396667_397420_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.0e-99	67.1
AWF35547.1\|397416_397764_-\|tail	phage minor tail family protein	K7PJT2	Enterobacteria_phage	1.0e-34	61.7
AWF36741.1\|397768_398005_-	hypothetical protein	K7P7A9	Enterobacteria_phage	5.7e-05	41.8
AWF35581.1\|399532_399991_-	hypothetical protein	H9C175	Pectobacterium_phage	7.9e-35	51.1
AWF38790.1\|400134_400308_-	hypothetical protein	A0A2I7R8F9	Vibrio_phage	2.8e-09	71.8
AWF38499.1\|400757_400871_+	hypothetical protein	NA	NA	NA	NA
AWF38747.1\|401754_402018_-	hypothetical protein	A0A2P0P958	Salmonella_phage	9.1e-28	69.0
AWF35176.1\|402180_402306_-	hypothetical protein	NA	NA	NA	NA
AWF38295.1\|402338_403127_-	hypothetical protein	C7BGF1	Burkholderia_phage	5.6e-65	53.7
AWF34393.1\|403119_403335_-	hypothetical protein	NA	NA	NA	NA
AWF37293.1\|403331_403934_-	hypothetical protein	NA	NA	NA	NA
AWF36449.1\|404020_404719_-	hypothetical protein	S5FM81	Shigella_phage	1.7e-28	41.8
AWF34548.1\|404821_404935_+	hypothetical protein	NA	NA	NA	NA
AWF37162.1\|405006_405123_-	hypothetical protein	NA	NA	NA	NA
AWF35589.1\|405275_405689_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	3.7e-44	70.5
AWF38268.1\|406118_406514_+	helix-turn-helix family protein	Q7Y5W5	Haemophilus_phage	5.8e-10	47.9

DBSCAN-SWA_2

435297 : 440852

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF36909.1\|435297_436287_+	D-lactate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	1.9e-70	45.7
AWF33964.1\|436412_436853_+	heat shock protein HslJ	NA	NA	NA	NA
AWF36800.1\|436849_437122_-	hypothetical protein	NA	NA	NA	NA
AWF37431.1\|437449_437815_-	hypothetical protein	NA	NA	NA	NA
AWF36516.1\|438045_438588_-	putative Peptidoglycan domain protein	A0A0U2I1S0	Escherichia_phage	2.4e-67	64.0
AWF38182.1\|438595_438868_-	hypothetical protein	A0A0U2SHD1	Escherichia_phage	4.0e-10	40.9
AWF33895.1\|438857_439250_-	putative membrane protein	K7PHB9	Enterobacterial_phage	2.2e-25	53.7
AWF34617.1\|439326_439515_-	putative n-like protein	A0A0P0ZBT9	Stx2-converting_phage	8.0e-10	47.5
AWF34998.1\|440150_440852_-	peptidase S24-like family protein	K7PKK1	Enterobacteria_phage	5.1e-33	40.0

DBSCAN-SWA_3

1049169 : 1071394

Salmonella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF37618.1\|1049169_1049928_+	deoxyribose operon repressor	A0A077SK06	Escherichia_phage	1.6e-11	27.2
AWF34905.1\|1049958_1051161_-	D-alanyl-D-alanine carboxypeptidase DacC	B6DZZ7	Stx2-converting_phage	4.2e-96	48.2
AWF34253.1\|1051947_1052724_-	hypothetical protein	NA	NA	NA	NA
AWF34662.1\|1052726_1054571_-	GDSL-like Lipase/Acylhydrolase family protein	A0A286S1P0	Klebsiella_phage	2.7e-25	55.0
AWF34067.1\|1054586_1055528_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	2.3e-20	62.4
AWF34344.1\|1055527_1056301_-	hypothetical protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.7e-67	52.1
AWF37308.1\|1056297_1057491_-	putative bacteriophage protein	A0A0M4RD32	Salmonella_phage	8.6e-158	74.7
AWF37082.1\|1057496_1057850_-	putative bacteriophage protein	A0A2H4J629	uncultured_Caudovirales_phage	5.6e-49	77.8
AWF38472.1\|1057851_1058871_-	hypothetical protein	A0A2H4JCJ1	uncultured_Caudovirales_phage	2.3e-71	76.9
AWF37323.1\|1058888_1059383_-	putative bacteriophage protein	A0A2H4JHM9	uncultured_Caudovirales_phage	6.1e-49	63.1
AWF36118.1\|1059394_1060594_-	hypothetical protein	A0A0M4R5A6	Salmonella_phage	2.2e-105	55.3
AWF33537.1\|1060592_1060727_+	hypothetical protein	NA	NA	NA	NA
AWF35996.1\|1060855_1061389_-	phage Mu F like family protein	A0A0M4REK0	Salmonella_phage	9.4e-48	54.6
AWF38897.1\|1061459_1062911_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.2e-190	68.1
AWF37751.1\|1063350_1064445_-	hypothetical protein	A0A077KAW0	Edwardsiella_phage	2.5e-140	66.7
AWF33667.1\|1064781_1065051_-	hypothetical protein	G8C7W1	Escherichia_phage	3.2e-12	48.3
AWF35880.1\|1065058_1065685_-	chitinase class I family protein	F1C591	Cronobacter_phage	2.2e-88	76.3
AWF34044.1\|1065700_1066390_-	hypothetical protein	A4JX52	Burkholderia_virus	2.3e-46	50.3
AWF33697.1\|1066382_1066595_-	hypothetical protein	NA	NA	NA	NA
AWF37291.1\|1066591_1066885_-	faeA-like family protein	NA	NA	NA	NA
AWF37861.1\|1066897_1067974_-	hypothetical protein	K7PLZ7	Enterobacterial_phage	4.3e-31	43.2
AWF34012.1\|1067970_1068087_-	hypothetical protein	NA	NA	NA	NA
AWF36044.1\|1068238_1068664_-	hypothetical protein	NA	NA	NA	NA
AWF35708.1\|1069891_1070185_+	bacteriophage lambda Kil family protein	NA	NA	NA	NA
AWF35065.1\|1070707_1071394_+	putative upf86.8	M1F3E2	Salmonella_phage	1.5e-69	61.2

DBSCAN-SWA_4

4515799 : 4582338

Erwinia_phage(31.91%)

tRNA,lysis,integrase,capsid,terminase,head,plate,portal,tail

attL 4516940:4516968|attR 4548622:4548650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF36594.1\|4515799_4516567_+\|tRNA	tRNA (guanine(37)-N(1))-methyltransferase	NA	NA	NA	NA
AWF34802.1\|4516606_4516954_+	ribosomal protein L19	NA	NA	NA	NA
4516940:4516968	attL	NA	NA	NA	NA
AWF38943.1\|4517042_4517183_+	hypothetical protein	NA	NA	NA	NA
AWF33492.1\|4517393_4518563_-	phage late control D family protein	A0A218M4J7	Erwinia_phage	4.6e-204	97.7
AWF38492.1\|4518559_4519045_-	phage P2 GpU family protein	S4TUC3	Salmonella_phage	1.5e-81	95.0
AWF33639.1\|4519056_4521498_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A0M3UL85	Salmonella_phage	0.0e+00	89.1
AWF37681.1\|4521490_4521610_-	phage P2 GpE family protein	O80316	Escherichia_phage	1.4e-15	100.0
AWF36538.1\|4521642_4521978_-	mu-like prophage FluMu gp41 family protein	A0A218M4J8	Erwinia_phage	6.8e-52	98.2
AWF36942.1\|4522041_4522560_-\|tail	phage major tail tube protein	Q37845	Escherichia_phage	5.0e-94	100.0
AWF33737.1\|4522575_4523754_-\|tail	phage tail sheath family protein	Q37844	Escherichia_phage	1.4e-213	95.7
AWF37289.1\|4523864_4524815_-\|tail	phage tail-collar fiber family protein	A0A248SL44	Klebsiella_phage	4.6e-21	33.0
AWF35278.1\|4524953_4525715_-	hypothetical protein	NA	NA	NA	NA
AWF37215.1\|4525716_4527402_-	GDSL-like Lipase/Acylhydrolase family protein	NA	NA	NA	NA
AWF39037.1\|4527404_4527974_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.1e-49	51.3
AWF34985.1\|4527999_4528908_-\|plate	baseplate J-like family protein	F1BUP3	Erwinia_phage	1.1e-112	70.9
AWF36245.1\|4528912_4529260_-	lysozyme family protein	Q7Y4D7	Escherichia_virus	5.4e-44	74.8
AWF38301.1\|4529256_4529898_-\|plate	baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	4.4e-100	85.9
AWF35341.1\|4529966_4530416_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.5e-70	96.0
AWF35607.1\|4530408_4530876_-\|tail	P2 phage tail completion R family protein	O80312	Escherichia_phage	5.1e-82	97.4
AWF36396.1\|4530838_4531012_-	putative protein lysB	Q6K1H9	Salmonella_virus	2.3e-24	96.5
AWF37744.1\|4530983_4531391_-\|lysis	phage lysis regulatory, LysB family protein	A0A218M4K2	Erwinia_phage	4.1e-35	60.4
AWF36535.1\|4531393_4531825_-	putative protein lysA	A0A218M4L6	Erwinia_phage	1.6e-61	81.8
AWF38125.1\|4531821_4532298_-	phage lysozyme family protein	A0A218M4K3	Erwinia_phage	1.1e-84	96.8
AWF35507.1\|4532317_4532539_-	putative membrane protein	A0A218M4L5	Erwinia_phage	3.2e-34	97.3
AWF36335.1\|4532529_4532718_-	phage Tail Protein X family protein	A0A218M4L8	Erwinia_phage	7.2e-27	95.2
AWF36405.1\|4532732_4533242_-\|head	phage head completion family protein	A0A218M4L7	Erwinia_phage	2.5e-90	98.8
AWF37140.1\|4533335_4534058_-\|terminase	phage small terminase subunit	S4TRV8	Salmonella_phage	5.4e-115	92.1
AWF36023.1\|4534089_4535157_-\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	9.6e-193	96.6
AWF34460.1\|4535232_4536087_-\|capsid	phage capsid scaffolding (GPO) serine peptidase family protein	A0A218M4L9	Erwinia_phage	1.4e-130	83.5
AWF33832.1\|4536252_4538022_+\|terminase	ATPase subunit of terminase family protein	A0A218M4M1	Erwinia_phage	0.0e+00	99.2
AWF35325.1\|4538021_4538768_+\|terminase	terminase-like family protein	O80303	Escherichia_phage	8.1e-138	94.8
AWF36694.1\|4538764_4539787_+\|portal	phage portal protein, PBSX family	A0A2I8TV74	Erwinia_phage	4.7e-197	99.1
AWF37997.1\|4540264_4540498_-	dinI-like family protein	A0A0M4S6H1	Salmonella_phage	8.0e-36	98.7
AWF36336.1\|4540501_4540684_-	putative tumA	A0A0M5M1G5	Salmonella_phage	4.1e-27	100.0
AWF36352.1\|4540803_4542873_-	bacteriophage replication protein A	A0A218M4H2	Erwinia_phage	0.0e+00	92.3
AWF33933.1\|4543294_4543567_-	hypothetical protein	A0A218M4I8	Erwinia_phage	6.3e-32	73.3
AWF34792.1\|4543563_4544145_-	exonuclease family protein	A0A1S6L012	Salmonella_phage	6.8e-84	78.2
AWF33591.1\|4544141_4544369_-	phage/conjugal plasmid C-4 type zinc finger, TraR family protein	A0A0M4S5Q7	Salmonella_phage	5.6e-26	80.6
AWF36265.1\|4544368_4544596_-	hypothetical protein	A0A0M3UL87	Salmonella_phage	2.2e-30	97.3
AWF35863.1\|4544663_4545002_-	putative prophage protein	A0A218M4I7	Erwinia_phage	2.1e-53	93.8
AWF33486.1\|4544965_4545166_-	hypothetical protein	Q6K1F7	Salmonella_virus	1.2e-32	100.0
AWF35793.1\|4545173_4545683_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	4.3e-90	99.4
AWF39040.1\|4545715_4546087_-	hypothetical protein	A0A0M4R4X7	Salmonella_phage	1.4e-61	99.2
AWF37719.1\|4547056_4547461_+	putative exported protein	NA	NA	NA	NA
AWF38544.1\|4547490_4548540_+\|integrase	phage integrase family protein	A0A0M4S6G4	Salmonella_phage	1.8e-188	90.3
AWF38152.1\|4548756_4549194_+	hypothetical protein	NA	NA	NA	NA
4548622:4548650	attR	NA	NA	NA	NA
AWF35750.1\|4549247_4550618_+	pepSY-associated TM helix family protein	NA	NA	NA	NA
AWF36244.1\|4550622_4551105_-	ompA family protein	NA	NA	NA	NA
AWF33772.1\|4551116_4552256_-	putative diguanylate cyclase YfiN	NA	NA	NA	NA
AWF35061.1\|4552332_4552734_-	hypothetical protein	NA	NA	NA	NA
AWF37346.1\|4552841_4553015_-	hypothetical protein	NA	NA	NA	NA
AWF36032.1\|4553185_4554256_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	8.1e-91	51.8
AWF38055.1\|4554265_4555387_+	T-protein	NA	NA	NA	NA
AWF33741.1\|4555456_4556329_+	SMP-30/Gluconolaconase/LRE-like region family protein	NA	NA	NA	NA
AWF35281.1\|4556325_4557486_-	P-protein	NA	NA	NA	NA
AWF38425.1\|4557747_4558083_-	ribosome-associated inhibitor A	NA	NA	NA	NA
AWF36298.1\|4558354_4559014_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AWF34923.1\|4559302_4560205_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AWF38061.1\|4560360_4560933_+	multi-copper polyphenol oxidoreductase laccase family protein	NA	NA	NA	NA
AWF35034.1\|4561060_4563634_+	ATP-dependent chaperone protein ClpB	H6X3M6	Enterobacteria_phage	1.8e-128	35.6
AWF36828.1\|4569249_4569363_-	hypothetical protein	NA	NA	NA	NA
AWF33900.1\|4569568_4570024_+	hypothetical protein	E3SMI8	Prochlorococcus_phage	3.3e-33	46.7
AWF37334.1\|4570297_4571596_+	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.2e-43	30.5
AWF33524.1\|4571598_4571871_-	hypothetical protein	NA	NA	NA	NA
AWF38172.1\|4571965_4573321_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AWF36415.1\|4573414_4576093_-	succinyl-CoA ligase like flavodoxin domain protein	NA	NA	NA	NA
AWF38209.1\|4576128_4576827_-	DTW domain protein	NA	NA	NA	NA
AWF34258.1\|4576896_4577322_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.6e-13	41.0
AWF34760.1\|4577525_4578599_+	RNA 2'-O ribose methyltransferase substrate binding family protein	NA	NA	NA	NA
AWF37459.1\|4578704_4579394_-	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	2.7e-55	52.1
AWF37953.1\|4579705_4580089_+	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	3.1e-32	69.9
AWF37781.1\|4580134_4581466_-	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	1.1e-44	30.8
AWF37365.1\|4581597_4582338_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_5

5120033 : 5133706

Enterobacteria_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF34764.1\|5120033_5120951_+	capsular polysaccharide synthesis family protein	A0A0N7KVT5	Yellowstone_lake_phycodnavirus	7.1e-27	36.2
AWF33540.1\|5120985_5121945_+	acyltransferase family protein	NA	NA	NA	NA
AWF35105.1\|5122250_5123657_+	6-phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	7.3e-39	28.7
AWF37260.1\|5123869_5125285_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.6e-55	30.5
AWF38640.1\|5125307_5126678_+	phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein	A0A127AWJ1	Bacillus_phage	7.1e-31	26.4
AWF38569.1\|5126772_5127837_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.9e-104	55.0
AWF36115.1\|5127848_5128718_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.5e-103	65.3
AWF36677.1\|5128749_5129640_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.9e-27	32.1
AWF36992.1\|5129654_5130209_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.6e-50	56.7
AWF34759.1\|5130382_5131549_+	nucleotide sugar dehydrogenase family protein	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.0
AWF37084.1\|5131928_5132093_+	hypothetical protein	NA	NA	NA	NA
AWF35676.1\|5132111_5132234_-	putative membrane protein	NA	NA	NA	NA
AWF38589.1\|5132701_5133706_-	3-beta hydroxysteroid dehydrogenase/isomerase family protein	E3T4Y8	Cafeteria_roenbergensis_virus	6.8e-31	28.6

DBSCAN-SWA_6

5299846 : 5321160

Pectobacterium_phage(31.25%)

tail,integrase,lysis

attL 5299659:5299718|attR 5321414:5321481

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5299659:5299718	attL	NA	NA	NA	NA
AWF36702.1\|5299846_5300863_-\|integrase	phage integrase family protein	H9C152	Pectobacterium_phage	2.8e-125	64.5
AWF36982.1\|5300846_5301092_-	hypothetical protein	H9C153	Pectobacterium_phage	2.8e-07	41.4
AWF37172.1\|5301301_5301487_-	hypothetical protein	NA	NA	NA	NA
AWF36482.1\|5301488_5302055_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	7.9e-53	63.0
AWF34192.1\|5302054_5304208_-	hypothetical protein	H9C157	Pectobacterium_phage	6.9e-97	34.1
AWF37453.1\|5304285_5304456_+	hypothetical protein	NA	NA	NA	NA
AWF38363.1\|5305789_5306236_+	hypothetical protein	H9C162	Pectobacterium_phage	1.0e-26	51.4
AWF37664.1\|5306319_5306478_+	hypothetical protein	NA	NA	NA	NA
AWF37738.1\|5306480_5307473_+	putative replication protein	A0A067ZIA1	Vibrio_phage	9.1e-28	52.3
AWF35036.1\|5307469_5308393_+	acetyltransferase family protein	A0A2H4J9Z5	uncultured_Caudovirales_phage	2.5e-16	40.7
AWF37645.1\|5308455_5308884_+	hypothetical protein	A0A2H4J679	uncultured_Caudovirales_phage	1.3e-10	47.0
AWF35809.1\|5308889_5311604_+	putative lytic transglycosylase	G9L6D3	Escherichia_phage	1.8e-288	58.5
AWF37028.1\|5311678_5314498_+	hypothetical protein	G9L6D4	Escherichia_phage	0.0e+00	72.3
AWF35549.1\|5315065_5315407_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	2.0e-19	48.2
AWF36533.1\|5315403_5317014_+	hypothetical protein	A0A2H4JCA3	uncultured_Caudovirales_phage	1.2e-226	70.8
AWF36688.1\|5317031_5319683_+\|tail	phage T7 tail fiber family protein	A0A0F6TJC8	Escherichia_coli_O157_typing_phage	1.5e-45	40.9
AWF36501.1\|5319691_5319970_+	hypothetical protein	NA	NA	NA	NA
AWF37659.1\|5320059_5320284_+\|lysis	lysis S family protein	A0A0P0ZFW5	Escherichia_phage	1.6e-20	70.1
AWF35349.1\|5320267_5320804_+	phage lysozyme family protein	K7PM52	Enterobacteria_phage	6.1e-79	78.0
AWF36123.1\|5320800_5321160_+	hypothetical protein	R9TPM9	Aeromonas_phage	1.3e-16	44.0
5321414:5321481	attR	NA	NA	NA	NA

DBSCAN-SWA_7

5341969 : 5384012

Escherichia_phage(43.24%)

tRNA,lysis,integrase,terminase

attL 5344611:5344625|attR 5365633:5365647

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF35755.1\|5341969_5343703_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.3e-85	33.6
AWF38692.1\|5343932_5344502_+	protein YecM	NA	NA	NA	NA
AWF38774.1\|5344578_5345322_+	copper homeostasis protein CutC	NA	NA	NA	NA
5344611:5344625	attL	NA	NA	NA	NA
AWF36683.1\|5345620_5346643_-\|tRNA	tRNA (mo5U34)-methyltransferase	NA	NA	NA	NA
AWF38632.1\|5346639_5347383_-\|tRNA	tRNA (cmo5U34)-methyltransferase	F5B419	Synechococcus_phage	1.5e-22	29.1
AWF36185.1\|5347422_5347818_-	inner membrane protein YecN	NA	NA	NA	NA
AWF34464.1\|5347871_5348597_-	hypothetical protein	Q859D1	Escherichia_coli_phage	1.9e-59	83.5
AWF35989.1\|5348647_5349907_-\|integrase	phage integrase family protein	A0A286S1S8	Klebsiella_phage	4.3e-224	89.7
AWF33424.1\|5349949_5350141_-	hypothetical protein	A0A286S2A4	Klebsiella_phage	5.2e-25	91.4
AWF37023.1\|5350354_5350570_-	prokaryotic dksA/traR C4-type zinc finger family protein	A0A0N7C211	Escherichia_phage	5.2e-13	50.0
AWF33620.1\|5350786_5352811_-	phage N-6-adenine-methyltransferase	A0A1B0V7P0	Salmonella_phage	3.8e-113	46.1
AWF34751.1\|5352962_5353643_-	exonuclease	A0A0M3ULE0	Salmonella_phage	1.8e-123	92.9
AWF38873.1\|5353639_5354470_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.9e-67	59.8
AWF34299.1\|5354500_5354785_-	hypothetical protein	G8C7T1	Escherichia_phage	4.7e-38	77.7
AWF38808.1\|5354792_5355764_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	5.6e-38	75.7
AWF36453.1\|5355852_5356011_-	hypothetical protein	NA	NA	NA	NA
AWF34310.1\|5356039_5356228_-	hypothetical protein	NA	NA	NA	NA
AWF35336.1\|5356226_5356364_+	hypothetical protein	NA	NA	NA	NA
AWF33980.1\|5357921_5358068_+	hypothetical protein	NA	NA	NA	NA
AWF35984.1\|5358060_5358960_+	hypothetical protein	F1C5C3	Cronobacter_phage	9.2e-88	54.5
AWF34603.1\|5358949_5360380_+	replicative DNA helicase	Q9MCT4	Escherichia_phage	4.0e-186	67.2
AWF35978.1\|5360379_5360682_+	hypothetical protein	NA	NA	NA	NA
AWF35181.1\|5360678_5361104_+	hypothetical protein	E7C9P6	Salmonella_phage	1.3e-20	65.9
AWF33932.1\|5361943_5362435_+	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	1.9e-26	70.7
AWF36988.1\|5362434_5362950_+	hypothetical protein	G9L6B3	Escherichia_phage	2.9e-70	73.3
AWF35388.1\|5362946_5363645_+	hypothetical protein	C6ZR26	Salmonella_phage	8.4e-12	57.1
AWF35526.1\|5364358_5364616_+	hot	G8C7V1	Escherichia_phage	6.0e-24	71.4
AWF36008.1\|5364806_5365256_+	protein ninB	Q8VNP6	Enterobacteria_phage	9.7e-38	52.4
AWF33848.1\|5365272_5365419_+	putative NinE-like protein from lambdoid prophage DLP12	G8C7V4	Escherichia_phage	3.5e-13	76.6
AWF35621.1\|5365411_5365702_+	hypothetical protein	K7PGZ6	Enterobacteria_phage	1.2e-44	89.6
5365633:5365647	attR	NA	NA	NA	NA
AWF33828.1\|5365698_5366061_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	5.6e-52	83.1
AWF34853.1\|5366057_5366198_+	hypothetical protein	NA	NA	NA	NA
AWF37048.1\|5366194_5366695_+	hypothetical protein	G8C7V7	Escherichia_phage	6.7e-88	92.7
AWF35583.1\|5367194_5367338_+	hypothetical protein	I6R0S9	Salmonella_phage	7.9e-18	88.4
AWF34765.1\|5367315_5367813_+	lysozyme RrrD	A0A1V0E5Q7	Salmonella_phage	3.9e-80	86.1
AWF35417.1\|5367809_5368271_+\|lysis	bacteriophage lysis family protein	M9NYX9	Enterobacteria_phage	1.0e-45	64.7
AWF38855.1\|5368509_5368635_+	putative membrane protein	NA	NA	NA	NA
AWF36090.1\|5368721_5369462_+	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	1.9e-14	29.9
AWF36932.1\|5369465_5370797_+\|terminase	terminase-like family protein	A0A0U2JTW9	Escherichia_phage	3.5e-152	59.7
AWF34387.1\|5370808_5372227_+	hypothetical protein	A0A0U2S5X9	Escherichia_phage	3.6e-86	36.5
AWF34665.1\|5372223_5373045_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	2.0e-52	40.8
AWF35200.1\|5373081_5374671_+	hypothetical protein	NA	NA	NA	NA
AWF36980.1\|5374686_5375547_+	hypothetical protein	NA	NA	NA	NA
AWF36522.1\|5375560_5376592_+	hypothetical protein	A0A0U2QQI2	Escherichia_phage	3.3e-73	45.8
AWF35869.1\|5376663_5377146_+	hypothetical protein	NA	NA	NA	NA
AWF35941.1\|5377142_5377571_+	hypothetical protein	A0A0U2S646	Escherichia_phage	1.4e-22	39.1
AWF33574.1\|5377567_5378002_+	hypothetical protein	NA	NA	NA	NA
AWF36842.1\|5377985_5378924_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	8.5e-52	37.9
AWF36179.1\|5378928_5380323_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	2.5e-68	35.5
AWF38011.1\|5380326_5380764_+	hypothetical protein	A0A0U2S616	Escherichia_phage	6.4e-26	38.9
AWF38872.1\|5380767_5381340_+	hypothetical protein	NA	NA	NA	NA
AWF37106.1\|5381463_5383284_+	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	3.7e-19	38.2
AWF37857.1\|5383286_5384012_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	7.1e-30	37.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029127

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

87 : 55747

Macacine_betaherpesvirus(15.0%)

integrase,transposase

attL 8585:8600|attR 56989:57004

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF33362.1\|87_300_-\|transposase	transposase family protein	U5P429	Shigella_phage	3.9e-05	54.5
AWF33373.1\|554_839_-\|transposase	transposase family protein	U5P4I9	Shigella_phage	2.0e-12	43.7
AWF33337.1\|1027_1996_+\|transposase	transposase family protein	Q75QL1	Wolbachia_phage	7.5e-27	33.8
AWF33390.1\|2717_3752_+	biotin synthase	NA	NA	NA	NA
AWF33358.1\|4164_4440_+	homeo-like domain protein	NA	NA	NA	NA
AWF33378.1\|4482_4749_+\|transposase	transposase family protein	NA	NA	NA	NA
AWF33368.1\|4844_5594_+	HTH-like domain protein	S5WIU1	Leptospira_phage	1.5e-46	40.3
AWF33376.1\|5953_6139_+	hypothetical protein	NA	NA	NA	NA
AWF33380.1\|6819_7005_+	hypothetical protein	NA	NA	NA	NA
AWF33393.1\|7113_7881_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	9.2e-28	57.1
AWF33370.1\|8532_9285_-	replication initiation protein	I3WF20	Macacine_betaherpesvirus	3.1e-121	86.6
8585:8600	attL	NA	NA	NA	NA
AWF33328.1\|9853_10036_-	hypothetical protein	NA	NA	NA	NA
AWF33345.1\|10008_10428_-\|transposase	putative transposase	NA	NA	NA	NA
AWF33400.1\|10515_10746_+	hypothetical protein	NA	NA	NA	NA
AWF33397.1\|11318_12452_+	chaperone of endosialidase family protein	A0A1Z1LZI1	Serratia_phage	9.7e-18	26.7
AWF33354.1\|12532_14650_+	colicin-D	NA	NA	NA	NA
AWF33402.1\|14796_14913_+	bacterial self-protective colicin-like immunity family protein	NA	NA	NA	NA
AWF33360.1\|15629_15773_+	hypothetical protein	NA	NA	NA	NA
AWF33401.1\|15832_16441_+	hypothetical protein	NA	NA	NA	NA
AWF33344.1\|16562_17288_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.5e-51	90.3
AWF33327.1\|17432_18302_-	hypothetical protein	Q2A0A7	Sodalis_phage	3.0e-67	56.2
AWF33336.1\|18418_18553_-	hypothetical protein	NA	NA	NA	NA
AWF33349.1\|19771_19963_-	putative lexA DNA-binding domain protein	A0A222YXS3	Escherichia_phage	6.4e-07	45.0
AWF33374.1\|20629_21901_-	hypothetical protein	F1C5A5	Cronobacter_phage	9.2e-158	64.0
AWF33391.1\|21900_22290_-	peptidase S24-like family protein	A0A1W6JNS2	Morganella_phage	5.8e-31	55.1
AWF33366.1\|22288_22432_+	hypothetical protein	NA	NA	NA	NA
AWF33346.1\|22620_22764_+	hypothetical protein	NA	NA	NA	NA
AWF33399.1\|23272_24562_+	DNA methylase family protein	A0A2K9VH43	Faecalibacterium_phage	1.5e-19	35.0
AWF33363.1\|24590_24839_+	proQ/FINO family protein	NA	NA	NA	NA
AWF33364.1\|25186_25357_+	hypothetical protein	NA	NA	NA	NA
AWF33352.1\|25517_26141_+	hypothetical protein	NA	NA	NA	NA
AWF33389.1\|26146_26797_+	hypothetical protein	NA	NA	NA	NA
AWF33387.1\|26793_27102_+	hypothetical protein	NA	NA	NA	NA
AWF33383.1\|27199_27757_+	endonuclease	A0A1B2LRT6	Wolbachia_phage	5.3e-17	33.8
AWF33388.1\|27956_28610_-	FCD domain protein	NA	NA	NA	NA
AWF33372.1\|28756_30043_-	major Facilitator Superfamily protein	NA	NA	NA	NA
AWF33329.1\|30098_30866_-	putative hexonate dehydrogenase	A0A0N9R355	Chrysochromulina_ericina_virus	6.4e-21	27.6
AWF33342.1\|31203_32457_+	putative dehydratase	Q6A202	Oenococcus_phage	3.9e-44	29.7
AWF33394.1\|32554_33196_-	resolvase, N terminal domain protein	NA	NA	NA	NA
AWF33343.1\|33363_36351_+	hypothetical protein	A0A1B0V7H9	Salmonella_phage	2.1e-293	53.2
AWF33341.1\|36856_37030_+	hypothetical protein	NA	NA	NA	NA
AWF33379.1\|37046_38210_+	ycaO-like family protein	NA	NA	NA	NA
AWF33381.1\|38219_38945_+	putative membrane protein	NA	NA	NA	NA
AWF33367.1\|38941_39670_+	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-09	24.9
AWF33405.1\|40575_41580_-\|transposase	transposase family protein	NA	NA	NA	NA
AWF33353.1\|42495_43359_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AWF33404.1\|44579_45296_+	HNH endonuclease family protein	NA	NA	NA	NA
AWF33335.1\|45448_45826_-	lysE type translocator family protein	NA	NA	NA	NA
AWF33333.1\|46087_47038_-	hypothetical protein	NA	NA	NA	NA
AWF33396.1\|47348_47480_-	hypothetical protein	NA	NA	NA	NA
AWF33403.1\|47877_48030_-	hypothetical protein	NA	NA	NA	NA
AWF33338.1\|48006_48711_+\|transposase	transposase IS66 family protein	A0A077SL39	Escherichia_phage	2.0e-130	94.0
AWF33334.1\|50375_50507_-	hypothetical protein	NA	NA	NA	NA
AWF33347.1\|50708_51311_+	fimbrial family protein	NA	NA	NA	NA
AWF33375.1\|51387_52089_+	gram-negative pili assembly chaperone, C-terminal domain protein	NA	NA	NA	NA
AWF33331.1\|52211_54791_+	papC C-terminal domain protein	NA	NA	NA	NA
AWF33356.1\|54885_55452_+	fimbrial family protein	NA	NA	NA	NA
AWF33348.1\|55531_55747_+\|transposase	transposase, Mutator family protein	A0A220NQR7	Corynebacterium_phage	3.5e-09	51.9
56989:57004	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029128

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029127

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection