CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP029125	Enterobacter hormaechei strain AR432 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
CP029124	Enterobacter hormaechei strain AR432 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0
CP029126	Enterobacter hormaechei strain AR432 chromosome, complete genome	3 crisprs	DEDDh,cas3,DinG,PD-DExK,RT,cas14j,WYL,csa3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	18	9

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029126_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029126_1

4830477-4830565

Unclear

I-F

Consensus_repeat	Method
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029126_1

>merge|CP029126|1|4830477-4830565|CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAATGAAGACCGTAAGCGGAGCGGCAATATCCTGGGTTCACTGCCGTGCAGGCAGCTTAGAAAT

>CP029126|1|1|4830477-4830565|CRISPRCasFinder
GTTCACTGCCGGGCAGGCAGCTTAGAAAT	GAAGACCGTAAGCGGAGCGGCAATATCCTGG
GTTCACTGCCGTGCAGGCAGCTTAGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP029126.1\|AWF32867.1\|4830708_4831644_-\|NADH-oxidoreductase-hcr	unknown	unknown	gnl\|CDD\|236735
CP029126.1\|AWF31327.1\|4828478_4830197_-\|pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
CP029126.1\|AWF33071.1\|4837204_4838161_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377343
CP029126.1\|AWF31303.1\|4818504_4819302_+\|bacterial-Peptidase-A24-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|224900
CP029126.1\|AWF32943.1\|4841443_4841665_-\|cold-shock-domain-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP029126.1\|AWF30768.1\|4839432_4841373_+\|macrolide-export-ATP-binding/permease-protein-MacB	unknown	unknown	gnl\|CDD\|182528
CP029126.1\|AWF33019.1\|4834563_4835259_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
CP029126.1\|AWF33136.1\|4825991_4827428_-\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|187556
CP029126.1\|AWF31295.1\|4824885_4825899_-\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223528
CP029126.1\|AWF31362.1\|4833484_4834384_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225287
CP029126.1\|AWF32615.1\|4818022_4818508_+\|type-II-secretion-system-(T2SS),-M-family-protein	unknown	unknown	gnl\|CDD\|377391
CP029126.1\|AWF29145.1\|4816892_4818026_+\|type-II-secretion-system-(T2SS),-L-family-protein	unknown	unknown	gnl\|CDD\|273768
CP029126.1\|AWF32381.1\|4831687_4833340_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP029126.1\|AWF28796.1\|4827438_4828440_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
CP029126.1\|AWF30864.1\|4841932_4842253_+\|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein	unknown	unknown	gnl\|CDD\|178809
CP029126.1\|AWF33070.1\|4823358_4824747_+\|PKD-domain-protein	unknown	unknown	gnl\|CDD\|381595
CP029126.1\|AWF31194.1\|4822361_4822802_+\|transglycosylase-SLT-domain-protein	unknown	unknown	gnl\|CDD\|185228
CP029126.1\|AWF33164.1\|4819556_4822259_+\|chitinase-A-domain-protein	unknown	unknown	gnl\|CDD\|119365
CP029126.1\|AWF30404.1\|4835564_4837208_+\|P-loop-containing-region-of-AAA-domain-protein	unknown	unknown	gnl\|CDD\|226121
CP029126.1\|AWF30823.1\|4838320_4839436_+\|macrolide-specific-efflux-protein-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
CP029126.1\|AWF32867.1\|4830708_4831644_-\|NADH-oxidoreductase-hcr	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
CP029126.1\|AWF31327.1\|4828478_4830197_-\|pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
CP029126.1\|AWF33071.1\|4837204_4838161_-\|hypothetical-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	5.04551e-128
CP029126.1\|AWF31303.1\|4818504_4819302_+\|bacterial-Peptidase-A24-N-terminal-domain-protein	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.87481e-40
CP029126.1\|AWF32943.1\|4841443_4841665_-\|cold-shock-domain-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
CP029126.1\|AWF30768.1\|4839432_4841373_+\|macrolide-export-ATP-binding/permease-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP029126.1\|AWF33019.1\|4834563_4835259_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
CP029126.1\|AWF33136.1\|4825991_4827428_-\|NADH(P)-binding-family-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.59891e-139
CP029126.1\|AWF31295.1\|4824885_4825899_-\|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.05058e-52
CP029126.1\|AWF31362.1\|4833484_4834384_-\|hypothetical-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117
CP029126.1\|AWF32615.1\|4818022_4818508_+\|type-II-secretion-system-(T2SS),-M-family-protein	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.13746e-29
CP029126.1\|AWF29145.1\|4816892_4818026_+\|type-II-secretion-system-(T2SS),-L-family-protein	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	6.87481e-40
CP029126.1\|AWF32381.1\|4831687_4833340_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP029126.1\|AWF28796.1\|4827438_4828440_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
CP029126.1\|AWF30864.1\|4841932_4842253_+\|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
CP029126.1\|AWF33070.1\|4823358_4824747_+\|PKD-domain-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	6.67082e-57
CP029126.1\|AWF31194.1\|4822361_4822802_+\|transglycosylase-SLT-domain-protein	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	6.11016e-87
CP029126.1\|AWF33164.1\|4819556_4822259_+\|chitinase-A-domain-protein	gnl\|CDD\|119365	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.	1.3015e-124
CP029126.1\|AWF30404.1\|4835564_4837208_+\|P-loop-containing-region-of-AAA-domain-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP029126.1\|AWF30823.1\|4838320_4839436_+\|macrolide-specific-efflux-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>CP029126.1|AWF31327.1|4828478_4830197_-|pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPAEEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAGKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKPTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDDALQRAFAIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>CP029126.1|AWF28796.1|4827438_4828440_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAVLFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGSLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKAITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGDFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>CP029126.1|AWF33136.1|4825991_4827428_-|NADH(P)-binding-family-protein
MPQRILVLGASGYIGQHLTTALSQQGHQVLAAARNTERLLKLHLPGVTCHNVDLSWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDALLQTPVKQVIFLSSLQAPEHEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSHTTPIALENLLHYLVALLDHPAEQHRVLEAAGPEVLSYQAQFEHFMRVSGRHRWLIPIPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRALRALIPQELIRFDDAVRNTLKKEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLAALWEVVNQIGGKERYFFGNILWQTRGALDLLVGHRLAKGRPAHPWLKVGDTVDSWKVIIVEPEKQLALLFVMKAPGLGRLCFTLKDNGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEQKRENN
>CP029126.1|AWF31295.1|4824885_4825899_-|3-beta-hydroxysteroid-dehydrogenase/isomerase-family-protein
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIVSLDEGIVRTAAWLRDHGKLHR
>CP029126.1|AWF33070.1|4823358_4824747_+|PKD-domain-protein
MFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKLYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKDGDYSKCVQHFFNVKIVNDEGSSETPDETPVTPTPTPSDDETPAPTPTPDETPVVVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDPDGNTLTYTWRSQDGQTVTGQDKAVVTFTAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNNAPTYYEPGAGLAWAEAWTAL
>CP029126.1|AWF31194.1|4822361_4822802_+|transglycosylase-SLT-domain-protein
MKKLILLLLIISQSALANCWNKAAHYYHVDPYLLYAIANVESGMNPYAVGQNRDGTRDVGLMQINSSHFTALESRGINEYRLITEPCTSIMVGASILAGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARY
>CP029126.1|AWF33164.1|4819556_4822259_+|chitinase-A-domain-protein
MKFMKPKYLALFIAAATSSAFAAAPGAPTIGYGNDKFALVEVDQAAQDYNNLVKVHNDGVDVKVEWNVWSGDAPTSAKVLLDGQTVWTGAAGATGSATFKVKKGGRYQEQVEVCNASGCAKSASKLIIVADTDGSHLLPLNTSLKENNKAFAKHTDKVVAAYFPEWGVYDRNFPVDKIPAANLNHILYGFIPICGGDGINDGLKTIEGGNSFRVLQNDCKGRPDYTVAIHDPWAALQKPQAGVSGWDDPYKGNFGQLMALKKAHPDLKVLPSIGGWTLSDPFFHMGDPAIRARFVSSVKEFLQTWKFFDGVDIDWEFPGGGGVSENLGNPQQDKATYTALMHDLRTMLNELSAQTGRTYELTSAIGAGRDKIEDVDYTAAQQYLDHIFLMSYDFYGGWSNTVLGHQAALRAPAWRPDTDYTTENGVNALLSQGVQPGKIVVGAGMYGRGWTGVHGYTGNNPFTGTATGMVKGTWEPGVVDYRQIVNEYKGKPGWEYGYDADAEAPYVFNKTTGDLITYEDARSTTAKGKYVLANKLGGLFAWSIDSDTGDILNAMNESLLGGDATPVDPEVTNHAPIASSADQNVSGPVTVTLDGSASSDPDGDAITYKWTQVSGPSVTITNSTKAKATFNVAAATSDQTMVFRLTVTDAKGLSNAIDIQVVNKAPKANQAPVLNPMEAITLESGETYALHAQAADPDGDALTYAWSVPADMHATGSDSANVNITAPEVSSTSTYTLSVVVSDGKTSVQSNVQVTVNPKAAPAPVPDDEDTNPADDVTPPADDVTPPSDKGSCDAPVDANASKYAAWESSKIYNGGDTVSFDHLVWKAKYWTQGNQPGFGVDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>CP029126.1|AWF31303.1|4818504_4819302_+|bacterial-Peptidase-A24-N-terminal-domain-protein
MNTFSLMRDAFPVGFPIMSAILGGIVGSFLGVVAERVPGMVMDEEGSGNLLFPASNCPVCQHALAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELISALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAFDHTLPLRDALFGAVAGYLSLWLLYWAFRLITGREGLGYGDFKLLAALGAWCGWQVLPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFAGIVVFMSQQFAFTF
>CP029126.1|AWF32615.1|4818022_4818508_+|type-II-secretion-system-(T2SS),-M-family-protein
MKERIAQLKSRYQNYSTREKIILKICAVAIVGAVVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQIVKTNNPRTVVENSAHEINLSLTDMRQEGQTLSFVLNRVNVYELRSWLREINQTSGVRLQKINLTPVDHLSDVKAQVQLTWSKNA
>CP029126.1|AWF29145.1|4816892_4818026_+|type-II-secretion-system-(T2SS),-L-family-protein
MKQVLFVRPDSREGGKIMWCESGSERVEVVDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLHKKGADVDAVAIDADRLRAALTRCQEAGLNVIQALPDAWLLPVTTGGSTLVAQDDSYWLRLSPHVAGEMEATLLPLLMQKAGVGEVWCYGDAPAKVHVDVQHAWQHPLALIQPQWQTCRVNLLHGEFSLKAGNGRAAKSMKAAMVAAGVLSVALLLGPRIAMAWMLVQQENRVQEEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLDELENARQSVPAMEIELLEYDAQQNTLTLSVSAQNQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>CP029126.1|AWF32867.1|4830708_4831644_-|NADH-oxidoreductase-hcr
MQVHHIHQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSEWLTRDVKRGDYIWLSDAQGEFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAENNATHGFVAGRLSRELLQSVPDIANRTVMTCGPAPYMEIVEKEVKALGVTRFFKEQFFTPVAEAATSGMKFTKLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>CP029126.1|AWF32381.1|4831687_4833340_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGIVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNAIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>CP029126.1|AWF31362.1|4833484_4834384_-|hypothetical-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>CP029126.1|AWF33019.1|4834563_4835259_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>CP029126.1|AWF30404.1|4835564_4837208_+|P-loop-containing-region-of-AAA-domain-protein
MEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>CP029126.1|AWF33071.1|4837204_4838161_-|hypothetical-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPSSLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>CP029126.1|AWF30823.1|4838320_4839436_+|macrolide-specific-efflux-protein-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>CP029126.1|AWF30768.1|4839432_4841373_+|macrolide-export-ATP-binding/permease-protein-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP029126.1|AWF32943.1|4841443_4841665_-|cold-shock-domain-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>CP029126.1|AWF30864.1|4841932_4842253_+|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA

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Crispr_ID: CP029126_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029126_2

4845648-4847115

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTGCAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CRT

24 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of CP029126_2

>merge|CP029126|2|4845648-4847115|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTGCAGGCAGCTTAGAAAGTGTTAACTCGCGATGGTGGTGGCCATGTTGGGTTCACTGCCGTGCAGGCAGCTTAGAAATCCATCTCGATGTAGACAAGGGTTTTCCCGTCGTTCACTGCCGTGCAGGCAGCTTAGAAAAGAGATTGTTGACGACATCAGGATGATGGGGTGTTCACTGCCGTGCAGGCAGCTTAGAAAAATCAGCAGCTGATCCATACAAGGGTTCTTTTGTTCACTGCCGTGCAGGCAGCTTAGAAACGTAGACACAGCGGCAACAAAGCGATCGTAAAGTTCACTGCCGTGCAGGCAGCTTAGAAATGACGACGGCACGACTGTCGCGATGTTTTTATGTTCACTGCCGTGCAGGCAGCTTAGAAATCGCACGGACGGTGATCCGTTGGGCATGAATCGTTCACTGCCGTGCAGGCAGCTTAGAAAGTCCAGGTCTGCGGTGAGCGCTTTTAGTTGCTGTTCACTGCCGTGCAGGCAGCTTAGAAAATTACCATCCGGGCCTTTACCGTTTACTGTTTGTTCACTGCCGTGCAGGCAGCTTAGAAAATGCGTCTCGGTCGATGCAAAGTACGTCCCGGGTTCACTGCCGTGCAGGCAGCTTAGAAAACAGAGTCAGAGACCAGGCCGCCACCGAACCCGTTCACTGCCGTGCAGGCAGCTTAGAAAAGCAGGTAGACGACGCGCGCCACAGACTGTGTGTTCACTGCCGTGCAGGCAGCTTAGAAACTTCCCGCGTCGGTCACGCAATCGGACATGACGTTCACTGCCGTGCAGGCAGCTTAGAAAGCGATATCGACGTAGCTGAAAAAGAGACAAAAGTTCACTGCCGTGCAGGCAGCTTAGAAAAGTTCAAGGCTGGCATCTTTGAGCAGTATTACGTTCACTGCCGTGCAGGCAGCTTAGAAAGTGGAGTTCGCCCGTTTCTGGGTCGAAGACCAGTTCACTGCCGTGCAGGCAGCTTAGAAAGCATTTTGAGGCCCATCGTTTTGATGGTCTTCGTTCACTGCCGTGCAGGCAGCTTAGAAAATCGCATCCTTGACGGGCTTCGCCAGCGCAAGGTTCACTGCCGTGCAGGCAGCTTAGAAATTTGAAGCCGGTATAAGTATCTGCACCAAATGGTTCACTGCCGTGCAGGCAGCTTAGAAACATAACGACACCTTTCAAAATCGTTAATTAACGTTCACTGCCGTGCAGGCAGCTTAGAAATGATTGAGCATTAACAGGGGCAGACTGTAGACGTTCACTGCCGTGCAGGCAGCTTAGAAACTGACGGGTCCCGATTTTGCGCTGGGCGTGAAGTTCACTGCCGTGCAGGCAGCTTAGAAACTGCTCTTCGCGAAGACCAGTTAAAACATAACGTTCACTGCCGTGCAGGCAGCTTAGAAAGTAGACCCCGCGATGAATATTCCATACTTAGAGTTCACTGCCGTGCAGGCATCATACCCC

>CP029126|2|1|4845648-4847055|PILER-CR
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTGTTAACTCGCGATGGTGGTGGCCATGTTGG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCCATCTCGATGTAGACAAGGGTTTTCCCGTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGAGATTGTTGACGACATCAGGATGATGGGGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AATCAGCAGCTGATCCATACAAGGGTTCTTTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CGTAGACACAGCGGCAACAAAGCGATCGTAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGACGACGGCACGACTGTCGCGATGTTTTTAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCGCACGGACGGTGATCCGTTGGGCATGAATC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTCCAGGTCTGCGGTGAGCGCTTTTAGTTGCT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATTACCATCCGGGCCTTTACCGTTTACTGTTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATGCGTCTCGGTCGATGCAAAGTACGTCCCGG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ACAGAGTCAGAGACCAGGCCGCCACCGAACCC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGCAGGTAGACGACGCGCGCCACAGACTGTGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTTCCCGCGTCGGTCACGCAATCGGACATGAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCGATATCGACGTAGCTGAAAAAGAGACAAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGTTCAAGGCTGGCATCTTTGAGCAGTATTAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTGGAGTTCGCCCGTTTCTGGGTCGAAGACCA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCATTTTGAGGCCCATCGTTTTGATGGTCTTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATCGCATCCTTGACGGGCTTCGCCAGCGCAAG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTTGAAGCCGGTATAAGTATCTGCACCAAATG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATAACGACACCTTTCAAAATCGTTAATTAAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGATTGAGCATTAACAGGGGCAGACTGTAGAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTGACGGGTCCCGATTTTGCGCTGGGCGTGAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTGCTCTTCGCGAAGACCAGTTAAAACATAAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA

>CP029126|2|2|4845648-4847115|CRISPRCasFinder
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTGTTAACTCGCGATGGTGGTGGCCATGTTGG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCCATCTCGATGTAGACAAGGGTTTTCCCGTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGAGATTGTTGACGACATCAGGATGATGGGGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AATCAGCAGCTGATCCATACAAGGGTTCTTTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CGTAGACACAGCGGCAACAAAGCGATCGTAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGACGACGGCACGACTGTCGCGATGTTTTTAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCGCACGGACGGTGATCCGTTGGGCATGAATC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTCCAGGTCTGCGGTGAGCGCTTTTAGTTGCT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATTACCATCCGGGCCTTTACCGTTTACTGTTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATGCGTCTCGGTCGATGCAAAGTACGTCCCGG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ACAGAGTCAGAGACCAGGCCGCCACCGAACCC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGCAGGTAGACGACGCGCGCCACAGACTGTGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTTCCCGCGTCGGTCACGCAATCGGACATGAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCGATATCGACGTAGCTGAAAAAGAGACAAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGTTCAAGGCTGGCATCTTTGAGCAGTATTAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTGGAGTTCGCCCGTTTCTGGGTCGAAGACCA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCATTTTGAGGCCCATCGTTTTGATGGTCTTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATCGCATCCTTGACGGGCTTCGCCAGCGCAAG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTTGAAGCCGGTATAAGTATCTGCACCAAATG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATAACGACACCTTTCAAAATCGTTAATTAAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGATTGAGCATTAACAGGGGCAGACTGTAGAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTGACGGGTCCCGATTTTGCGCTGGGCGTGAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTGCTCTTCGCGAAGACCAGTTAAAACATAAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTAGACCCCGCGATGAATATTCCATACTTAGA
GTTCACTGCCGTGCAGGCATCATACCCC

>CP029126|2|1|4845648-4847115|CRT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTGTTAACTCGCGATGGTGGTGGCCATGTTGG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCCATCTCGATGTAGACAAGGGTTTTCCCGTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGAGATTGTTGACGACATCAGGATGATGGGGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AATCAGCAGCTGATCCATACAAGGGTTCTTTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CGTAGACACAGCGGCAACAAAGCGATCGTAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGACGACGGCACGACTGTCGCGATGTTTTTAT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TCGCACGGACGGTGATCCGTTGGGCATGAATC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTCCAGGTCTGCGGTGAGCGCTTTTAGTTGCT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATTACCATCCGGGCCTTTACCGTTTACTGTTT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATGCGTCTCGGTCGATGCAAAGTACGTCCCGG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ACAGAGTCAGAGACCAGGCCGCCACCGAACCC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGCAGGTAGACGACGCGCGCCACAGACTGTGT
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTTCCCGCGTCGGTCACGCAATCGGACATGAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCGATATCGACGTAGCTGAAAAAGAGACAAAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	AGTTCAAGGCTGGCATCTTTGAGCAGTATTAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTGGAGTTCGCCCGTTTCTGGGTCGAAGACCA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GCATTTTGAGGCCCATCGTTTTGATGGTCTTC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	ATCGCATCCTTGACGGGCTTCGCCAGCGCAAG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TTTGAAGCCGGTATAAGTATCTGCACCAAATG
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CATAACGACACCTTTCAAAATCGTTAATTAAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	TGATTGAGCATTAACAGGGGCAGACTGTAGAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTGACGGGTCCCGATTTTGCGCTGGGCGTGAA
GTTCACTGCCGTGCAGGCAGCTTAGAAA	CTGCTCTTCGCGAAGACCAGTTAAAACATAAC
GTTCACTGCCGTGCAGGCAGCTTAGAAA	GTAGACCCCGCGATGAATATTCCATACTTAGA
GTTCACTGCCGTGCAGGCATCATACCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029126.1\|AWF33071.1\|4837204_4838161_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377343
CP029126.1\|AWF33019.1\|4834563_4835259_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
CP029126.1\|AWF30823.1\|4838320_4839436_+\|macrolide-specific-efflux-protein-MacA	unknown	unknown	gnl\|CDD\|183211
CP029126.1\|AWF32741.1\|4855907_4856273_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131346
CP029126.1\|AWF32943.1\|4841443_4841665_-\|cold-shock-domain-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP029126.1\|AWF30768.1\|4839432_4841373_+\|macrolide-export-ATP-binding/permease-protein-MacB	unknown	unknown	gnl\|CDD\|182528
CP029126.1\|AWF28989.1\|4857569_4857788_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP029126.1\|AWF28958.1\|4855437_4855911_-\|RES-domain-protein	unknown	unknown	gnl\|CDD\|227941
CP029126.1\|AWF30111.1\|4847378_4848362_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP029126.1\|AWF29561.1\|4858072_4858777_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP029126.1\|AWF31362.1\|4833484_4834384_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225287
CP029126.1\|AWF32237.1\|4851596_4852907_+\|CRISPR-associated-family-protein	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
CP029126.1\|AWF29080.1\|4852903_4853839_+\|CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
CP029126.1\|AWF31172.1\|4853852_4854851_+\|CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP029126.1\|AWF30515.1\|4845221_4845470_+\|hypothetical-protein	unknown	unknown	unknown
CP029126.1\|AWF32784.1\|4842313_4844560_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP029126.1\|AWF30864.1\|4841932_4842253_+\|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein	unknown	unknown	gnl\|CDD\|178809
CP029126.1\|AWF30798.1\|4848358_4851580_+\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP029126.1\|AWF31588.1\|4854860_4855415_+\|CRISPR-associated-endonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
CP029126.1\|AWF30404.1\|4835564_4837208_+\|P-loop-containing-region-of-AAA-domain-protein	unknown	unknown	gnl\|CDD\|226121

Protein	Function_ID	Function_description	E-value
CP029126.1\|AWF33071.1\|4837204_4838161_-\|hypothetical-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	5.04551e-128
CP029126.1\|AWF33019.1\|4834563_4835259_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
CP029126.1\|AWF30823.1\|4838320_4839436_+\|macrolide-specific-efflux-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP029126.1\|AWF32741.1\|4855907_4856273_-\|hypothetical-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	4.08533e-43
CP029126.1\|AWF32943.1\|4841443_4841665_-\|cold-shock-domain-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	9.14248e-48
CP029126.1\|AWF30768.1\|4839432_4841373_+\|macrolide-export-ATP-binding/permease-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP029126.1\|AWF28989.1\|4857569_4857788_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
CP029126.1\|AWF30111.1\|4847378_4848362_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
CP029126.1\|AWF29561.1\|4858072_4858777_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.58101e-138
CP029126.1\|AWF31362.1\|4833484_4834384_-\|hypothetical-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.69399e-117
CP029126.1\|AWF32237.1\|4851596_4852907_+\|CRISPR-associated-family-protein	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	6.56643e-165
CP029126.1\|AWF29080.1\|4852903_4853839_+\|CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.83262e-132
CP029126.1\|AWF31172.1\|4853852_4854851_+\|CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP029126.1\|AWF31588.1\|4854860_4855415_+\|CRISPR-associated-endonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	3.60571e-93
CP029126.1\|AWF32784.1\|4842313_4844560_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP029126.1\|AWF30864.1\|4841932_4842253_+\|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
CP029126.1\|AWF30798.1\|4848358_4851580_+\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP029126.1\|AWF28958.1\|4855437_4855911_-\|RES-domain-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	1.86389e-27
CP029126.1\|AWF30404.1\|4835564_4837208_+\|P-loop-containing-region-of-AAA-domain-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0

>CP029126.1|AWF30515.1|4845221_4845470_+|hypothetical-protein
MCDFRVVEFDDEAERPKEKEWLLEDTETKCDYCRALNHALLVSYFDREMLPHLTGLLHDITYSMAADVAAPECGKPVIHIIN
>CP029126.1|AWF32784.1|4842313_4844560_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDPSGQINSNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVDETVQIINGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVGLDQAKNELTYDFQSAAKHKPEAAH
>CP029126.1|AWF30864.1|4841932_4842253_+|ATP-dependent-Clp-protease-adaptor-ClpS-family-protein
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA
>CP029126.1|AWF32943.1|4841443_4841665_-|cold-shock-domain-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAETVA
>CP029126.1|AWF30768.1|4839432_4841373_+|macrolide-export-ATP-binding/permease-protein-MacB
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAPKEALPASTGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTRVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTISGRIMGQSWLNSITVRVKEGYDSALAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP029126.1|AWF30823.1|4838320_4839436_+|macrolide-specific-efflux-protein-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLTRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSETLPGAAQ
>CP029126.1|AWF33071.1|4837204_4838161_-|hypothetical-protein
MSSIVDTPYSTLPQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQTTLDALNDHYEMMSRHLPSSLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCTYQGKPTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQDNGNFALPLTMPRKPMEEIASKKRSEYRRRYALLDSLIQQVSQATAR
>CP029126.1|AWF30404.1|4835564_4837208_+|P-loop-containing-region-of-AAA-domain-protein
MEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPGGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTALPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>CP029126.1|AWF33019.1|4834563_4835259_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>CP029126.1|AWF31362.1|4833484_4834384_-|hypothetical-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSLAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>CP029126.1|AWF30111.1|4847378_4848362_+|CRISPR-associated-endonuclease-Cas1
MPANSITPSDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLCPQSEYRPTEYLQNWVSFWFNEEKRLQAAKHFQFIRLQQIEKQWSGLRMQREMAFQPDKDALNTLLERARQGMEKAQDHTSLMLQEAQLTKSLYKLTSQTTGYGNFTRAKRGGGADMANRFLDQGNYLAYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALVMPQAFIAAMEGEDNQQFRQRCINAFQQADALDVMITTLQETSQSLAGSTK
>CP029126.1|AWF30798.1|4848358_4851580_+|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGAITLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLLKESKHRFQPYRHEWISVRLFQAFVGQQTDAQWLASLEHLKATDEKAMLKALTMDTPEKSGSPLGNLPPLARVVAWLMLSHHRLPQSHSAEPQLLYCDGWLERQLNADWNSLNHRSEKPKWTGRDLKNVWKFPHGTPLRSKTWREKARQIGKRIRNTPALLDFGSLDNLFTLHLSRLSLMLADHFYSSQPAYSGWQDDVVQIWANSNPEPNQKLDEHNVGVAHHALLMGRSLPTLRRALPAIARHKTFRERAKDPRFHWQNKAWDVASSLRDKSAEQGFFGINMASTGCGKTFANARIMYALADEQEGCRFSVALGLRTLTLQTGHALQSRLGLDDDTLAVVTGAAAVKELYQGNDTEDTSSASGEAFFASHHYVHYEGAISSGIAQQWLAKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDIDDLHALCRLVNWAGMLGSRVLLSSATLPPALTEALFEAYREGRKAWQAACGRSDRPMNICCAWFDEYCAQSQDVADDAHFHRAHGDFVRQRIKRLPDQPRLRLGKLAAVEPQSSSKTDVVSALAQTLRQQMIALHGLHHSTHNAGKTVSFGLVRMANINPLVAVAQTLMALPSPDNYSIHYCVYHSQHPLAVRAAIERRLDCAFTRHEPERIWQLPEVKQALASQEKHHLFVVLGSPILETGRDLDADWGIIEPSSMRSLIQFAGRIQRHRQIVPDNENLVILERNVHALRGEKVAYCLPGFETGQHLLPHHDLHALIDEEGYRTLNAIPRIAEDVPGNALAALEHTRLRAALLEGGDKSDAVAALWWRLPLTWNGELQKRTPFRHASAQASFFLSMEEEGDEPEFCLMQEDGVLKPAGRFCVQPLSMADGVKPWIAIDYAEVLQALADEKQMELEAVSRRYGEITLRVTREEETEQWLYHPVLGVFREYL
>CP029126.1|AWF32237.1|4851596_4852907_+|CRISPR-associated-family-protein
MSVEALSAFIAEYIAGRRQTKLEAFDKEAAKRSDTDSATLAAERRELELRYEPKAWLTDAAKRAGQINLVTHAAKFTHGDSKSCSIYSEAVAQEGYLSTAALSGLDTDAVGNAAALDVAKLLQTRVDGGDSLLASLKRGDHAALAAFADDENQLREWIAGFSRALTPGEPASHKLAKQGYFPVEEGYHLLSPLFATSLVHAMHQKMIAFRFGDEVKAIWKARREKTWHPTPLTLFPDAAEIHFGGTKPQNISYLNSVRGGRCWLLSCQPPQGKRAEKAPTNLRSVFASGGQFDRRARSQIQLLVSLLTKTGSYTSFRIREARDGYINMLIDLLFEIASELQREAWQNWTLNCPNLKPHQQLWLDPWRTKTDEAFRLEREKDDWQGAMAEDFSLWLNARLRKAMPDLGAVEKREWETRERLRSNLREMEKIIQEALK
>CP029126.1|AWF29080.1|4852903_4853839_+|CRISPR-associated-protein-Csy2
MSSLILLRRIRVENANAIAGLTYGFPAITHFLGFSHALSRKLTKTHGLQIDGCAVVSHEHQIHAHTSGRDYQFALTRNPLTRDTKTASFNEEGRMHMTVSLLLECHGEIPNGEYGQRDLAEHLSQVCPTLRLAGGIIVDIQAITVMAMPSDSRDLCRLQWQLMPGFALRDRSSWLGEHYQTLLESDPNTSLLDAWLDFAAMKFQAETPEEGDIREGEPANWHYVPKPNPGYLVPLMTGYQRISALYSPGMVSNARDAETPFAFTEAVYGVGEWCGLHRIHSLNEIFWRFHTTETGYYCQGAGAPVTSAHSK
>CP029126.1|AWF31172.1|4853852_4854851_+|CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATSDAVMYSGSWQGETWQPICIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFFWRNRVGAEKIIVRVTGSKTWTFDAYCYALRDFSASDKDLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEIFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDAEQQHYVMAVLIRGGVFGEKGE
>CP029126.1|AWF31588.1|4854860_4855415_+|CRISPR-associated-endonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSEEMLMAALMAKLHRALGQRGKGDIGVSFPAHGIKPGAVLRLHGEHLALSELESLAWRKGLSDYCLCSAIKAVPEVHHWRCVSRVQVKSSAPRLMRRSVKKGWITEEEAQQRIRTMEEARTDLPWLNLRSLSTGQSFRLFIRHGELLSAPVVGMFSTYGLSATATVPWF
>CP029126.1|AWF28958.1|4855437_4855911_-|RES-domain-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSIDIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFHKALNSVELMPFNFDTRLAEKTAP
>CP029126.1|AWF32741.1|4855907_4856273_-|hypothetical-protein
MRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>CP029126.1|AWF28989.1|4857569_4857788_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP029126.1|AWF29561.1|4858072_4858777_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPGQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRHEGTWITRDIIIAYHQLHELGYAHSIEVWSGDDLVGGMYGVAQGTLFCGESMFSRATNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEISRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA

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Crispr_ID: CP029126_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029126_3

4856592-4857459

TypeI-F

I-F

Consensus_repeat	Method
GTGCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRT

14 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of CP029126_3

>merge|CP029126|3|4856592-4857459|PILER-CR,CRISPRCasFinder,CRT
GTGCACTGCCGTACAGGCAGCTTAGAAATCCTCCAGTGCCGCGCCTTCGATCGCTTCACCGTGCACTGCCGTACAGGCAGCTTAGAAAAGCACGAATACAAAAGCAGTAGTCATCAACTTGTGCACTGCCGTACAGGCAGCTTAGAAACTCAGCTGTAATGCGCTCCACGCTGTTGATACGTGCACTGCCGTACAGGCAGCTTAGAAATCCATCGCTACGGCCTGGTTGATTACCATTTTGTGCACTGCCGTACAGGCAGCTTAGAAAGGTGAGCGCAGCAGCATGACGGCGCTGAAGAAGTGCACTGCCGTACAGGCAGCTTAGAAAATTGCACTGAAACTATCCAGCGCACGGAAAAAGTGCACTGCCGTACAGGCAGCTTAGAAAGTTATGGATTTCGACGCCAGTAGGGAATGACAGTGCACTGCCATACAGGCAGCTTAGAAATGACTGCCCAGGGTGATTTTGTACCGCCGAAAGTGCACTGCCGTACAGGCAGCTTAGAAAAGTCGAATTGTTGCCAGTCGGCTTTATCCATAGTGCACTGCCGTACAGGCAGCTTAGAAATGGAGCCTGAAAGGTGATGCGCCAGCTCCGGCGTGCACTGCCGTACAGGCAGCTTAGAAAGACAACATCAACAATCGTCATTGCTGCCATCAGTGCACTGCCGTACAGGCAGCTTAGAAAGATGGGGAGCGGCAAAACACAGGCGCTGCTTCGTGCACTGCCGTACAGGCAGCTTAGAAAGCTACGGCTGCGGGTATGAATCCGGTTTTATCGTGCACTGCCGTACAGGCAGCTTAGAAATCATCGAGTGTAAGGCTGTGTGATTTTATTGTGTGCACCACCGTACAACCAACACAAAAC

>CP029126|3|2|4856592-4857399|PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCTCCAGTGCCGCGCCTTCGATCGCTTCACC
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGCACGAATACAAAAGCAGTAGTCATCAACTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTCAGCTGTAATGCGCTCCACGCTGTTGATAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCATCGCTACGGCCTGGTTGATTACCATTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGTGAGCGCAGCAGCATGACGGCGCTGAAGAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATTGCACTGAAACTATCCAGCGCACGGAAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTTATGGATTTCGACGCCAGTAGGGAATGACA
GTGCACTGCCATACAGGCAGCTTAGAAA	TGACTGCCCAGGGTGATTTTGTACCGCCGAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGTCGAATTGTTGCCAGTCGGCTTTATCCATA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGAGCCTGAAAGGTGATGCGCCAGCTCCGGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GACAACATCAACAATCGTCATTGCTGCCATCA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATGGGGAGCGGCAAAACACAGGCGCTGCTTC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GCTACGGCTGCGGGTATGAATCCGGTTTTATC
GTGCACTGCCGTACAGGCAGCTTAGAAA

>CP029126|3|3|4856592-4857459|CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCTCCAGTGCCGCGCCTTCGATCGCTTCACC
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGCACGAATACAAAAGCAGTAGTCATCAACTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTCAGCTGTAATGCGCTCCACGCTGTTGATAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCATCGCTACGGCCTGGTTGATTACCATTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGTGAGCGCAGCAGCATGACGGCGCTGAAGAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATTGCACTGAAACTATCCAGCGCACGGAAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTTATGGATTTCGACGCCAGTAGGGAATGACA
GTGCACTGCCATACAGGCAGCTTAGAAA	TGACTGCCCAGGGTGATTTTGTACCGCCGAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGTCGAATTGTTGCCAGTCGGCTTTATCCATA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGAGCCTGAAAGGTGATGCGCCAGCTCCGGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GACAACATCAACAATCGTCATTGCTGCCATCA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATGGGGAGCGGCAAAACACAGGCGCTGCTTC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GCTACGGCTGCGGGTATGAATCCGGTTTTATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCATCGAGTGTAAGGCTGTGTGATTTTATTGT
GTGCACCACCGTACAACCAACACAAAAC

>CP029126|3|2|4856592-4857399|CRT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCTCCAGTGCCGCGCCTTCGATCGCTTCACC
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGCACGAATACAAAAGCAGTAGTCATCAACTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	CTCAGCTGTAATGCGCTCCACGCTGTTGATAC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TCCATCGCTACGGCCTGGTTGATTACCATTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	GGTGAGCGCAGCAGCATGACGGCGCTGAAGAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATTGCACTGAAACTATCCAGCGCACGGAAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GTTATGGATTTCGACGCCAGTAGGGAATGACA
GTGCACTGCCATACAGGCAGCTTAGAAA	TGACTGCCCAGGGTGATTTTGTACCGCCGAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGTCGAATTGTTGCCAGTCGGCTTTATCCATA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGAGCCTGAAAGGTGATGCGCCAGCTCCGGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GACAACATCAACAATCGTCATTGCTGCCATCA
GTGCACTGCCGTACAGGCAGCTTAGAAA	GATGGGGAGCGGCAAAACACAGGCGCTGCTTC
GTGCACTGCCGTACAGGCAGCTTAGAAA	GCTACGGCTGCGGGTATGAATCCGGTTTTATC
GTGCACTGCCGTACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029126.1\|AWF29675.1\|4869031_4870375_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP029126.1\|AWF33294.1\|4863936_4864431_+\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP029126.1\|AWF29561.1\|4858072_4858777_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP029126.1\|AWF32741.1\|4855907_4856273_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131346
CP029126.1\|AWF28989.1\|4857569_4857788_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP029126.1\|AWF30764.1\|4864566_4868280_+\|AAA-like-domain-protein	unknown	unknown	gnl\|CDD\|236669
CP029126.1\|AWF30111.1\|4847378_4848362_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP029126.1\|AWF31578.1\|4860543_4862310_-\|thiol-reductant-ABC-exporter,-CydD-subunit	unknown	unknown	gnl\|CDD\|236870
CP029126.1\|AWF32237.1\|4851596_4852907_+\|CRISPR-associated-family-protein	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
CP029126.1\|AWF29080.1\|4852903_4853839_+\|CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|187867
CP029126.1\|AWF31172.1\|4853852_4854851_+\|CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP029126.1\|AWF30515.1\|4845221_4845470_+\|hypothetical-protein	unknown	unknown	unknown
CP029126.1\|AWF32784.1\|4842313_4844560_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP029126.1\|AWF31354.1\|4868407_4869022_+\|outer-membrane-lipocarrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP029126.1\|AWF28998.1\|4858822_4860544_-\|thiol-reductant-ABC-exporter,-CydC-subunit	unknown	unknown	gnl\|CDD\|236865
CP029126.1\|AWF30798.1\|4848358_4851580_+\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP029126.1\|AWF28958.1\|4855437_4855911_-\|RES-domain-protein	unknown	unknown	gnl\|CDD\|227941
CP029126.1\|AWF29264.1\|4870467_4871760_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP029126.1\|AWF31588.1\|4854860_4855415_+\|CRISPR-associated-endonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
CP029126.1\|AWF33008.1\|4862424_4863393_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343

Protein	Function_ID	Function_description	E-value
CP029126.1\|AWF29675.1\|4869031_4870375_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP029126.1\|AWF33294.1\|4863936_4864431_+\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
CP029126.1\|AWF29561.1\|4858072_4858777_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.58101e-138
CP029126.1\|AWF32741.1\|4855907_4856273_-\|hypothetical-protein	gnl\|CDD\|131346	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family. Proteins in this family are found almost exclusively in the Proteobacteria, but also in Gloeobacter violaceus PCC 7421, a cyanobacterium. This family was proposed by Makarova, et al. (2009) to be the antitoxin component of a new class of type 2 toxin-antitoxin system, or addiction module. [Cellular processes, Other].	4.08533e-43
CP029126.1\|AWF28989.1\|4857569_4857788_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	2.9822e-48
CP029126.1\|AWF30764.1\|4864566_4868280_+\|AAA-like-domain-protein	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP029126.1\|AWF30111.1\|4847378_4848362_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
CP029126.1\|AWF31578.1\|4860543_4862310_-\|thiol-reductant-ABC-exporter,-CydD-subunit	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP029126.1\|AWF32237.1\|4851596_4852907_+\|CRISPR-associated-family-protein	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	6.56643e-165
CP029126.1\|AWF29080.1\|4852903_4853839_+\|CRISPR-associated-protein-Csy2	gnl\|CDD\|187867	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.83262e-132
CP029126.1\|AWF31172.1\|4853852_4854851_+\|CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP029126.1\|AWF32784.1\|4842313_4844560_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP029126.1\|AWF31354.1\|4868407_4869022_+\|outer-membrane-lipocarrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	8.10736e-117
CP029126.1\|AWF28998.1\|4858822_4860544_-\|thiol-reductant-ABC-exporter,-CydC-subunit	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP029126.1\|AWF30798.1\|4848358_4851580_+\|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP029126.1\|AWF28958.1\|4855437_4855911_-\|RES-domain-protein	gnl\|CDD\|227941	COG5654, COG5654, Uncharacterized conserved protein [Function unknown].	1.86389e-27
CP029126.1\|AWF29264.1\|4870467_4871760_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP029126.1\|AWF31588.1\|4854860_4855415_+\|CRISPR-associated-endonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	3.60571e-93
CP029126.1\|AWF33008.1\|4862424_4863393_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0

>CP029126.1|AWF32741.1|4855907_4856273_-|hypothetical-protein
MRLIEYLNQGLPVSVLDNIHEWTDMSKAEILRVTGINERNVARRKSTGRTLTPDESERVARFVRVLDAAVDYFGSKEEAWNWLQLPVRGLGNVAPVDLIATETGALEVTDLIGRLEHGVFA
>CP029126.1|AWF28958.1|4855437_4855911_-|RES-domain-protein
MIFYRLVTGRFASEAWSGSGANQYGGRWNHKGHPAVYVSTSISLASLEILVHVRKDTVLNQYQLFSIDIPDDQIDYLDKAWLPEDWQENPAPVSTMDLGTGWLQANSALALILPSCIIPYENNAILNPLHPAFHKALNSVELMPFNFDTRLAEKTAP
>CP029126.1|AWF31588.1|4854860_4855415_+|CRISPR-associated-endonuclease-Cas6/Csy4
MDHYIEIRVLPDPEFSEEMLMAALMAKLHRALGQRGKGDIGVSFPAHGIKPGAVLRLHGEHLALSELESLAWRKGLSDYCLCSAIKAVPEVHHWRCVSRVQVKSSAPRLMRRSVKKGWITEEEAQQRIRTMEEARTDLPWLNLRSLSTGQSFRLFIRHGELLSAPVVGMFSTYGLSATATVPWF
>CP029126.1|AWF31172.1|4853852_4854851_+|CRISPR-associated-protein-Csy3
MAKAPTAVKTASVLAFERKLATSDAVMYSGSWQGETWQPICIQEKAVRGTISNRLKNALTNDPAKLDAEIQKANLQRVDVAALPADADTLQVKFTLRVLGNLSTPSVCNDRAYQDALQQVIDGYISEHGFAELARRYATNLANGRFFWRNRVGAEKIIVRVTGSKTWTFDAYCYALRDFSASDKDLEALAQEIEKGLSGEGFVLLNVEAQVLLGAGQEIFPSQELVLDSNSSKSRLLYQVDNVAGMHSQKIGNAIRTIDTWHPKVDELGAIAVEPYGSVTSRGVACRQPKEKMDFYTLLDNWVTKGQKPDAEQQHYVMAVLIRGGVFGEKGE
>CP029126.1|AWF29080.1|4852903_4853839_+|CRISPR-associated-protein-Csy2
MSSLILLRRIRVENANAIAGLTYGFPAITHFLGFSHALSRKLTKTHGLQIDGCAVVSHEHQIHAHTSGRDYQFALTRNPLTRDTKTASFNEEGRMHMTVSLLLECHGEIPNGEYGQRDLAEHLSQVCPTLRLAGGIIVDIQAITVMAMPSDSRDLCRLQWQLMPGFALRDRSSWLGEHYQTLLESDPNTSLLDAWLDFAAMKFQAETPEEGDIREGEPANWHYVPKPNPGYLVPLMTGYQRISALYSPGMVSNARDAETPFAFTEAVYGVGEWCGLHRIHSLNEIFWRFHTTETGYYCQGAGAPVTSAHSK
>CP029126.1|AWF32237.1|4851596_4852907_+|CRISPR-associated-family-protein
MSVEALSAFIAEYIAGRRQTKLEAFDKEAAKRSDTDSATLAAERRELELRYEPKAWLTDAAKRAGQINLVTHAAKFTHGDSKSCSIYSEAVAQEGYLSTAALSGLDTDAVGNAAALDVAKLLQTRVDGGDSLLASLKRGDHAALAAFADDENQLREWIAGFSRALTPGEPASHKLAKQGYFPVEEGYHLLSPLFATSLVHAMHQKMIAFRFGDEVKAIWKARREKTWHPTPLTLFPDAAEIHFGGTKPQNISYLNSVRGGRCWLLSCQPPQGKRAEKAPTNLRSVFASGGQFDRRARSQIQLLVSLLTKTGSYTSFRIREARDGYINMLIDLLFEIASELQREAWQNWTLNCPNLKPHQQLWLDPWRTKTDEAFRLEREKDDWQGAMAEDFSLWLNARLRKAMPDLGAVEKREWETRERLRSNLREMEKIIQEALK
>CP029126.1|AWF30798.1|4848358_4851580_+|CRISPR-associated-helicase-Cas3,-subtype-I-F/YPEST
MNVLIISRCTKRAREQSCQIIDQFAERTGDAAWQTTITMEGAITLRKLLRKTARRNTAVACHWLKKNGQTELLWIVGNLRRFNAQGRVPTNRTTLQIIRNDSEHRWQSAESIALLAAIAGLFHDFGKAGMCFQQTLLKESKHRFQPYRHEWISVRLFQAFVGQQTDAQWLASLEHLKATDEKAMLKALTMDTPEKSGSPLGNLPPLARVVAWLMLSHHRLPQSHSAEPQLLYCDGWLERQLNADWNSLNHRSEKPKWTGRDLKNVWKFPHGTPLRSKTWREKARQIGKRIRNTPALLDFGSLDNLFTLHLSRLSLMLADHFYSSQPAYSGWQDDVVQIWANSNPEPNQKLDEHNVGVAHHALLMGRSLPTLRRALPAIARHKTFRERAKDPRFHWQNKAWDVASSLRDKSAEQGFFGINMASTGCGKTFANARIMYALADEQEGCRFSVALGLRTLTLQTGHALQSRLGLDDDTLAVVTGAAAVKELYQGNDTEDTSSASGEAFFASHHYVHYEGAISSGIAQQWLAKEPALNRLVSAPVLVTTIDHLMPATEGVRGGRQIPAMLRLLTSDLVLDEPDDFDIDDLHALCRLVNWAGMLGSRVLLSSATLPPALTEALFEAYREGRKAWQAACGRSDRPMNICCAWFDEYCAQSQDVADDAHFHRAHGDFVRQRIKRLPDQPRLRLGKLAAVEPQSSSKTDVVSALAQTLRQQMIALHGLHHSTHNAGKTVSFGLVRMANINPLVAVAQTLMALPSPDNYSIHYCVYHSQHPLAVRAAIERRLDCAFTRHEPERIWQLPEVKQALASQEKHHLFVVLGSPILETGRDLDADWGIIEPSSMRSLIQFAGRIQRHRQIVPDNENLVILERNVHALRGEKVAYCLPGFETGQHLLPHHDLHALIDEEGYRTLNAIPRIAEDVPGNALAALEHTRLRAALLEGGDKSDAVAALWWRLPLTWNGELQKRTPFRHASAQASFFLSMEEEGDEPEFCLMQEDGVLKPAGRFCVQPLSMADGVKPWIAIDYAEVLQALADEKQMELEAVSRRYGEITLRVTREEETEQWLYHPVLGVFREYL
>CP029126.1|AWF30111.1|4847378_4848362_+|CRISPR-associated-endonuclease-Cas1
MPANSITPSDLKTILHSKRANIYYLEKCRIQVNGGRVEYVTQEGKESFYWNIPIANTTAVMLGMGTSVTQMAMREFARAGVMVGFCGTDGTPLYSANEVDIDVSWLCPQSEYRPTEYLQNWVSFWFNEEKRLQAAKHFQFIRLQQIEKQWSGLRMQREMAFQPDKDALNTLLERARQGMEKAQDHTSLMLQEAQLTKSLYKLTSQTTGYGNFTRAKRGGGADMANRFLDQGNYLAYGLAAVAAWVTGIPHGLAVMHGKTRRGGLVFDIADLIKDALVMPQAFIAAMEGEDNQQFRQRCINAFQQADALDVMITTLQETSQSLAGSTK
>CP029126.1|AWF30515.1|4845221_4845470_+|hypothetical-protein
MCDFRVVEFDDEAERPKEKEWLLEDTETKCDYCRALNHALLVSYFDREMLPHLTGLLHDITYSMAADVAAPECGKPVIHIIN
>CP029126.1|AWF32784.1|4842313_4844560_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPNQASDPSGQINSNEEQAGGEDRMENFTTNLNQLARVGGIDPLIGRDKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVIADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVMGSTTYQEFSNIFEKDRALARRFQKIDVTEPSVDETVQIINGLKTKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPASKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLRTLGNRLKMLVFGQDKAIEALTEAIKMARAGLGHDHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVGLDQAKNELTYDFQSAAKHKPEAAH
>CP029126.1|AWF28989.1|4857569_4857788_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLDTLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP029126.1|AWF29561.1|4858072_4858777_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHNIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPGQFHLSRSMKRFHAKSPFRVTLNHAFGQVIEGCAEDRHEGTWITRDIIIAYHQLHELGYAHSIEVWSGDDLVGGMYGVAQGTLFCGESMFSRATNASKTALLVFSQEFARRGGQLMDCQVLNEHTASLGAVEISRRHYIEHLEQCRKETLPRDFWVPRTLFIPNA
>CP029126.1|AWF28998.1|4858822_4860544_-|thiol-reductant-ABC-exporter,-CydC-subunit
MRALLPYLALYKRHKWMLTLGIVLAIVTLLASIGLLTLSGWFLSASAAAGFAGLYSFNYMLPAAGVRGTAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARFRQGELLNRVVADVDTLDHLYLRVISPMVGAFVVIVVVTLGLSFLDVPIALTLGGIMLMTLIILPPLFYRAGKTTGENLTRLRGEYRQQLTAWLQGQAELTLFGASKRYRARMENTELNWHEAQRRQSELTAFSQALMMLIGGIAVIAMLWMASGGVGGNAQPGPLIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITDIAEQEPEVKFSAGQTAVPEQVALTLSNVTFAYDKQAQNALEDITLSVDAGQRIAILGRTGCGKSTLLQLLTRAWDPQQGEIRFNDVPLSGFSEAALRKTVSVVPQRVHLFSATLRDNLLLAAPDASDDTLRAMLEQVGLHKLLEDDGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQILDLLANVMKGKTVLMVTHRLRGLVNFDQIIVMDNGHIIEQGSHAELLAKQGRYYQFKQRL
>CP029126.1|AWF31578.1|4860543_4862310_-|thiol-reductant-ABC-exporter,-CydD-subunit
MEKTRQQELTRWLKQQSVLSRRWLMISRVLGFISGLLIVAQAWLLARILNHMIMENIPREALLLPFIVLVLVFVLRAWVVWLRERVGFHAGQHIRYEIRRKVLDRLSEAGPAWIQGKPAGSWATLILEQIDDMHDYYARYLPQMALAVFVPLMIVIAIFPVNWVAALILLGTAPLIPLFMAMVGMGAADANRRNFLALGRLSGHFLDRLRGMETLRIFGRGEAETENIRLASQDFRQRTMEVLRMAFLSSGVLEFFTSLSIALVAVYFGFSYLGALDFGHYGTAVTLSAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLANPERGEVTLNTNDPVTIEAQDFSVLSPEGKVLAGPLNFTLPAGQRVVLVGTSGSGKSSLLNALSGFMAYTGSLRINKTELRELDPDAWRKQLSWVGQNPQLPAPTLRENVLLARPDAREDELQSVLDRAWVSEFLPLLAQGVDTVIGDQSAGLSVGQAQRVAVARALLNPSSLMLLDEPAASLDAHSEQRVMDALNAASRQQTTLMVTHQLEGIADWDQIWVMENGHIVEQGDYAALVAAQGPFATLLANRQEDI
>CP029126.1|AWF33008.1|4862424_4863393_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEILFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIASEVHLIHRRDTFRAEKILIKRLMDKVASGNIVLHTNRTLEEVTGDQMGVAGLRIRDTQNTDNVETLEVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSVPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLAEQGK
>CP029126.1|AWF33294.1|4863936_4864431_+|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP029126.1|AWF30764.1|4864566_4868280_+|AAA-like-domain-protein
MSQEYTEDKEVTLSKLSSGRRLLEALLIVIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGVPGAWLADTLFFIFGVMAYTLPVIIIGGCWFAWRHRQNDDYIDYFAVSLRLIGALALILTSCGLAAINADDIWYFASGGVIGSLLSSALQPMLHSSGGTLALLCIWAAGLTLFTGWSWVSIAEKIGSFILTLLTFASNRTRRDDTWVDEDEYEDEYEEEDEAPVQRRESRRARILRGALARRQRVAEKFANPLGRKTDAALFSGKRMDEEEQIEYRGAAVDPDDVLFSGHRATPGEYDEYDPLLHGHSVTEPVAAAAAATTAAQAHVAPVEAVMPSSPVPAPESAIQQPQVDWQTAPGVHTPEPTIAPEPESYIPVQQEQWQQPYQPPEPASEPQQPYQPPEPASEPQQPYQAYTPEPAEPEQPYVAPVSEPEVVEEAKPSRPPLYYFEEVEERRAREREQLAAWYQPVPEPVQEPVVKAPSASVAPVDPAPAVASRAETVKQATAAAAAAASAPLFSPATDGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRMAEEKARESDYEDDADELHQDELARQFAAQQTQRYGNEYQHDVHSQQDEDDAAEAELARQFAATQQQRYSGEQPSGANPFSLSDFEFSPMKDLVDDGPSEPLFTPSVMPEAEPVRQAPAPQVNAQPQQPAPQAYAQPHTPPAQPPQPQFQQPAPQPQESLIHPLLMRNGDSRPLQRPSTPLPSLDLLTPPPAEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNTKFRDNPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTSPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGGGGFDGGEELDPLFDQAVNFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP029126.1|AWF31354.1|4868407_4869022_+|outer-membrane-lipocarrier-protein-LolA
MKKIAIACALLSSFVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGNAVQEGQGDLWVKRPNLFNWHMTQPDESVLVSDGKTLWFYNPFVEQATATWLKDATSNTPFMLIARNQSSDWQQYNIKQNGDEFVLTPKGSNGNLKQFTINVSSNGTINQFGAVEQDDQRSSYQLKSQQNGAVDASKFTFTPPQGVTVDDQRNK
>CP029126.1|AWF29675.1|4869031_4870375_+|replication-associated-recombination-protein-A
MSNLSLDFSDNAFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTIFFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEKVLTQAMEDKARGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMMADMAEVDDAGKRVLKQELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAAMSDARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEEYFPQEMAQTRYYHPTNRGLEGKIGEKLAWLAGQDQNSPIKRYR
>CP029126.1|AWF29264.1|4870467_4871760_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVQTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDQAKAELDVLQAEIRDIALAIPNIPDDSVPVGKDENDNVEVKRWGTPREFDFEVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIAHLHRALAQFMLDLHTEQHGYSETYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLDEEADSSNYALIPTAEVPLTNLVRDEIIDEDDLPIKLTAHSPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEESMDALEEMTGHAEKVLELLGLPYRRMALCTGDMGFGACKTFDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVLENYQQADGRIEIPEVLRPYMKGQQFIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029126_2	2.18\|4846696\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846696-4846727	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	262867-262898	4	0.875
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	844230-844261	5	0.844
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	JF974339	Enterobacteria phage IME10, complete genome	39217-39248	5	0.844
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	KJ832078	Enterobacteria phage Sf101, complete genome	19811-19842	5	0.844
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	BK000583	TPA_inf: Enterobacteria phage P22 wild type, complete genome	22715-22746	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	AY121862	Enterobacteria phage P22 section D, partial genomic sequence	4506-4537	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	MN161573	UNVERIFIED: Salmonella virus P22 isolate HT105/1 int-201, complete genome	22715-22746	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	AB426868	Enterobacteria phage P22 DNA, complete genome, strain: ATCC 19585-B1	22652-22683	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	MW013502	Salmonella virus L cI-40 13-am43, complete genome	21280-21311	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	KR296686	Salmonella phage 22, complete genome	24930-24961	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	MT774487	Salmonella phage MG40, complete genome	20089-20120	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	L06296	Bacteriophage P22 eaA - eaI genes, complete cds	1404-1435	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	NC_002371	Enterobacteria phage P22 virus, complete genome	22715-22746	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	KR296688	Salmonella phage 34, complete genome	35121-35152	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	X04052	Lambdoid bacteriophage P22 int-xis region (integrase-excisionase region)	1405-1436	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	NC_004348	Enterobacteria phage ST64T, complete genome	4466-4497	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	MW013503	Salmonella virus L cII-101, complete genome	21280-21311	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	AF217253	Bacteriophage P22 complete genome	4466-4497	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	KR296687	Salmonella phage 25, complete genome	35129-35160	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	AB362338	Enterobacteria phage P22 DNA, complete sequence, strain: MSU	22652-22683	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	GQ422451	Enterobacteria phage Phi75, partial genome	3916-3947	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	GQ422450	Enterobacteria phage UAB_Phi20, complete genome	32075-32106	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	4466-4497	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	AF527608	Bacteriophage P22-pbi, complete sequence	22715-22746	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	MF188997	Salmonella phage vB_SalP_PM43, complete genome	4466-4497	6	0.812
CP029126_3	3.14\|4857400\|32\|CP029126\|CRISPRCasFinder	4857400-4857431	32	MT932212	Salmonella phage VSe13, complete genome	21521-21552	6	0.812
CP029126_2	2.8\|4846096\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846096-4846127	32	MG592572	Vibrio phage 1.201.B._10N.286.55.F1, partial genome	2672-2703	7	0.781
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1308885-1308916	7	0.781
CP029126_2	2.17\|4846636\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846636-4846667	32	MK882925	Dinoroseobacter phage vB_DshS-R4C, complete genome	34347-34378	7	0.781
CP029126_3	3.1\|4856620\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856620-4856651	32	MN694731	Marine virus AFVG_250M1191, complete genome	221-252	7	0.781
CP029126_3	3.1\|4856620\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856620-4856651	32	MN693724	Marine virus AFVG_250M1190, complete genome	203-234	7	0.781
CP029126_3	3.1\|4856620\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856620-4856651	32	MN693724	Marine virus AFVG_250M1190, complete genome	60491-60522	7	0.781
CP029126_3	3.4\|4856800\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856800-4856831	32	NC_021805	Cellulophaga phage phi12a:1, complete genome	2770-2801	7	0.781
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	188479-188510	7	0.781
CP029126_2	2.3\|4845796\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845796-4845827	32	NZ_CP010683	Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence	65875-65906	8	0.75
CP029126_2	2.3\|4845796\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845796-4845827	32	NZ_CP010718	Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence	65875-65906	8	0.75
CP029126_2	2.7\|4846036\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846036-4846067	32	MT939492	Xanthomonas phage Xoo-sp14, complete genome	146795-146826	8	0.75
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP019603	Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence	362407-362438	8	0.75
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	527108-527139	8	0.75
CP029126_2	2.13\|4846396\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846396-4846427	32	NZ_CP045326	Mycobacterium sp. THAF192 plasmid pTHAF192_a, complete sequence	52030-52061	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NC_009928	Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence	184310-184341	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	MG099950	Arthrobacter phage Waltz, complete genome	34411-34442	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NZ_LT853881	Xanthomonas fragariae strain NBC2815 plasmid pNBC2815-21, complete sequence	8941-8972	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NC_029106	Achromobacter phage phiAxp-2, complete genome	49495-49526	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NZ_CP042264	Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence	130348-130379	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NZ_LR723680	Arsenite-oxidising bacterium NT-25 plasmid 4	67139-67170	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NZ_FO082821	Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence	28097-28128	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	FN436268	Acaryochloris phage A-HIS1, complete genome	12924-12955	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	KU160664	Arthrobacter phage Salgado, complete genome	35984-36015	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	MH617239	Microviridae sp. isolate ctch204, complete genome	3921-3952	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	MF140418	Arthrobacter phage LiSara, complete genome	36330-36361	8	0.75
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	KU160654	Arthrobacter phage Laroye, complete genome	36168-36199	8	0.75
CP029126_3	3.1\|4856620\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856620-4856651	32	MK284521	Gordonia phage Kiko, complete genome	8271-8302	8	0.75
CP029126_3	3.2\|4856680\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856680-4856711	32	NZ_CP053689	Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence	116296-116327	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NZ_CP016593	Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence	174731-174762	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NC_017386	Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence	109931-109962	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NC_014621	Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence	76633-76664	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NZ_CP012909	Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence	174739-174770	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NC_012849	Ralstonia pickettii 12D plasmid pRp12D02, complete sequence	169175-169206	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3823321-3823352	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	MK415401	Phage apr34_1789, complete genome	18077-18108	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	MK415401	Phage apr34_1789, complete genome	45320-45351	8	0.75
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	MK415401	Phage apr34_1789, complete genome	72448-72479	8	0.75
CP029126_2	2.1\|4845676\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845676-4845707	32	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	165669-165700	9	0.719
CP029126_2	2.1\|4845676\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845676-4845707	32	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	89024-89055	9	0.719
CP029126_2	2.1\|4845676\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845676-4845707	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	308944-308975	9	0.719
CP029126_2	2.3\|4845796\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845796-4845827	32	MT080592	UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome	25322-25353	9	0.719
CP029126_2	2.3\|4845796\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845796-4845827	32	MT080603	UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome	23687-23718	9	0.719
CP029126_2	2.3\|4845796\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845796-4845827	32	MT080597	UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome	114657-114688	9	0.719
CP029126_2	2.3\|4845796\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845796-4845827	32	MT080598	UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome	27347-27378	9	0.719
CP029126_2	2.3\|4845796\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845796-4845827	32	MT080599	UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome	23716-23747	9	0.719
CP029126_2	2.6\|4845976\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845976-4846007	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1285636-1285667	9	0.719
CP029126_2	2.6\|4845976\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845976-4846007	32	MT889367	Gordonia phage Orla, complete genome	21897-21928	9	0.719
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP013634	Rhizobium sp. N324 plasmid pRspN324d, complete sequence	470768-470799	9	0.719
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	434920-434951	9	0.719
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	651570-651601	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NC_002703	Lactococcus phage Tuc2009, complete genome	4341-4372	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	AF323669	Bacteriophage bIL286, complete genome	4851-4882	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	AJ245616	Lactococcus lactis phage BK5-T complete genome	30984-31015	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	AF109874	Bacteriophage Tuc2009, complete genome	4341-4372	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	AF176025	Lactococcus phage BK5-T, complete genome	30984-31015	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	MK448908	Streptococcus phage Javan326, complete genome	10829-10860	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NC_002667	Lactococcus prophage bIL286, complete genome	4851-4882	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	MF285618	Serratia phage 2050HW, complete genome	207565-207596	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	MH617641	Microviridae sp. isolate ctji855, complete genome	3799-3830	9	0.719
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NC_048792	Serratia phage Moabite, complete genome	272276-272307	9	0.719
CP029126_3	3.1\|4856620\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856620-4856651	32	NZ_CP021331	Maritalea myrionectae strain HL2708#5 plasmid pHL2708X3, complete sequence	131868-131899	9	0.719
CP029126_3	3.3\|4856740\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856740-4856771	32	KY421186	Flavobacterium phage FL-1, complete genome	50873-50904	9	0.719
CP029126_3	3.5\|4856860\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856860-4856891	32	NZ_CP015043	Rhodovulum sp. P5 plasmid pRGUI04, complete sequence	32912-32943	9	0.719
CP029126_2	2.1\|4845676\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4845676-4845707	32	NC_020910	Octadecabacter arcticus 238 plasmid pOA238_160, complete sequence	136525-136556	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1127495-1127526	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	801896-801927	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	851719-851750	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1127616-1127647	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	851722-851753	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	623876-623907	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1270564-1270595	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	851726-851757	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1127260-1127291	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1127206-1127237	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	860185-860216	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	615849-615880	10	0.688
CP029126_2	2.12\|4846336\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846336-4846367	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	823423-823454	10	0.688
CP029126_2	2.16\|4846576\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846576-4846607	32	NZ_CP034911	Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence	48587-48618	10	0.688
CP029126_2	2.17\|4846636\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846636-4846667	32	NC_015184	Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence	426204-426235	10	0.688
CP029126_2	2.18\|4846696\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846696-4846727	32	NZ_LR134465	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence	255367-255398	10	0.688
CP029126_3	3.4\|4856800\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856800-4856831	32	KC821631	Cellulophaga phage phi48:1, complete genome	2770-2801	10	0.688
CP029126_3	3.4\|4856800\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4856800-4856831	32	KC821628	Cellulophaga phage phi18:4, complete genome	2770-2801	10	0.688
CP029126_2	2.22\|4846936\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4846936-4846967	32	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	191135-191166	11	0.656
CP029126_3	3.10\|4857160\|32\|CP029126\|PILER-CR,CRISPRCasFinder,CRT	4857160-4857191	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	583620-583651	11	0.656

1. spacer 2.18|4846696|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.875

atcgcatccttgacgggcttcgcc-agcgcaag	CRISPR spacer
atcgcatcctggacggacttcgccaagcgcca-	Protospacer
********** *****.******* ***** *

2. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 5, identity: 0.844

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
gccgagttcgcccgtttctgcgttgaagaccg	Protospacer
*. ***************** **.*******.

3. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to JF974339 (Enterobacteria phage IME10, complete genome) position: , mismatch: 5, identity: 0.844

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgaggcggtgtgatttctttat	Protospacer
***********.**** *********. **.*

4. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to KJ832078 (Enterobacteria phage Sf101, complete genome) position: , mismatch: 5, identity: 0.844

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgaggcggtgtgatttctttat	Protospacer
***********.**** *********. **.*

5. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to BK000583 (TPA_inf: Enterobacteria phage P22 wild type, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

6. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to AY121862 (Enterobacteria phage P22 section D, partial genomic sequence) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

7. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to MN161573 (UNVERIFIED: Salmonella virus P22 isolate HT105/1 int-201, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

8. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to AB426868 (Enterobacteria phage P22 DNA, complete genome, strain: ATCC 19585-B1) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

9. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgagactgtgtgattccatgat	Protospacer
***********.**.**********..** .*

10. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to KR296686 (Salmonella phage 22, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

11. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgagactgtgtgattccatgat	Protospacer
***********.**.**********..** .*

12. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to L06296 (Bacteriophage P22 eaA - eaI genes, complete cds) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

13. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to NC_002371 (Enterobacteria phage P22 virus, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

14. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to KR296688 (Salmonella phage 34, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

15. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to X04052 (Lambdoid bacteriophage P22 int-xis region (integrase-excisionase region)) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

16. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgagactgtgtgattccatgat	Protospacer
***********.**.**********..** .*

17. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgagactgtgtgattccatgat	Protospacer
***********.**.**********..** .*

18. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to AF217253 (Bacteriophage P22 complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

19. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to KR296687 (Salmonella phage 25, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

20. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to AB362338 (Enterobacteria phage P22 DNA, complete sequence, strain: MSU) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

21. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to GQ422451 (Enterobacteria phage Phi75, partial genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

22. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to GQ422450 (Enterobacteria phage UAB_Phi20, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

23. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgagactgtgtgattccatgat	Protospacer
***********.**.**********..** .*

24. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to AF527608 (Bacteriophage P22-pbi, complete sequence) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

25. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcgagtgtgagactgtgtgattccatgat	Protospacer
***********.**.**********..** .*

26. spacer 3.14|4857400|32|CP029126|CRISPRCasFinder matches to MT932212 (Salmonella phage VSe13, complete genome) position: , mismatch: 6, identity: 0.812

tcatcgagtgtaaggctgtgtgattttattgt	CRISPR spacer
tcatcaagtgtgaggctgtgtgattccatgtt	Protospacer
*****.*****.*************..**  *

27. spacer 2.8|4846096|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MG592572 (Vibrio phage 1.201.B._10N.286.55.F1, partial genome) position: , mismatch: 7, identity: 0.781

gtccag-gtctgcggtgagcgcttttagttgct	CRISPR spacer
-cctagtttctgcggtgagctcttttagttgga	Protospacer
 .*.**  ************ **********

28. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 7, identity: 0.781

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
ggcgagttcgcccctttccgggtcgaaatcaa	Protospacer
*  ********** ****.********. * *

29. spacer 2.17|4846636|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MK882925 (Dinoroseobacter phage vB_DshS-R4C, complete genome) position: , mismatch: 7, identity: 0.781

-gcattttgaggcccatcgttttgatggtcttc	CRISPR spacer
agcacgac-aggcccatcgttttgatggtgttg	Protospacer
 ***.  . ******************** **

30. spacer 3.1|4856620|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MN694731 (Marine virus AFVG_250M1191, complete genome) position: , mismatch: 7, identity: 0.781

tcctccagtgccgcgccttcgatcgcttcacc	CRISPR spacer
ccttcgatcgctgcgccttcgatcgcttcccc	Protospacer
.*.** * .**.***************** **

31. spacer 3.1|4856620|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MN693724 (Marine virus AFVG_250M1190, complete genome) position: , mismatch: 7, identity: 0.781

tcctccagtgccgcgccttcgatcgcttcacc	CRISPR spacer
ccttcgatcgctgcgccttcgatcgcttcccc	Protospacer
.*.** * .**.***************** **

32. spacer 3.1|4856620|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MN693724 (Marine virus AFVG_250M1190, complete genome) position: , mismatch: 7, identity: 0.781

tcctccagtgccgcgccttcgatcgcttcacc	CRISPR spacer
ccttcgatcgctgcgccttcgatcgcttcccc	Protospacer
.*.** * .**.***************** **

33. spacer 3.4|4856800|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_021805 (Cellulophaga phage phi12a:1, complete genome) position: , mismatch: 7, identity: 0.781

tccatcgc---tacggcctggttgattaccatttt	CRISPR spacer
---gtagcgtgtaccgcctgattgattaccatttt	Protospacer
   .* **   *** *****.**************

34. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 7, identity: 0.781

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
gccgagcgcagcagcgtgacgacgctgagcag	Protospacer
* .************.*****.******. *.

35. spacer 2.3|4845796|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010683 (Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence) position: , mismatch: 8, identity: 0.75

agagattgttgacgacatcaggatgatggggt	CRISPR spacer
agcgcgtgttgacgccatcatgatgatggatc	Protospacer
** *  ******** ***** ********. .

36. spacer 2.3|4845796|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010718 (Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence) position: , mismatch: 8, identity: 0.75

agagattgttgacgacatcaggatgatggggt	CRISPR spacer
agcgcgtgttgacgccatcatgatgatggatc	Protospacer
** *  ******** ***** ********. .

37. spacer 2.7|4846036|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 8, identity: 0.75

tcgcacggacggtgatccgttgggcatgaatc-	CRISPR spacer
acgcactgacggtgttccgttggg-acgatcgg	Protospacer
 ***** ******* ********* *.** .

38. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019603 (Croceicoccus marinus strain E4A9 plasmid pCME4A9I, complete sequence) position: , mismatch: 8, identity: 0.75

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agcaggttgacgacgcccgccaccgcgtcgga	Protospacer
******* ******** ****** *  *  *

39. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.75

agcaggtagacgacgcgcgccac---agactgtgt	CRISPR spacer
agctggtagacgaagcgcgccacctgaggata---	Protospacer
*** ********* *********   **. *.

40. spacer 2.13|4846396|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045326 (Mycobacterium sp. THAF192 plasmid pTHAF192_a, complete sequence) position: , mismatch: 8, identity: 0.75

cttcccgcgtcggtcacgcaatcggacatgac	CRISPR spacer
gggatcgcgtcggtcatgcaatcgggcatgat	Protospacer
    .***********.********.*****.

41. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_009928 (Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
aactagttcgcccgtttctgggtcaaaaatta	Protospacer
.   ********************.**.*..*

42. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MG099950 (Arthrobacter phage Waltz, complete genome) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
gacacgttcgcccgtttccgggtcgaaggcgg	Protospacer
*  . *************.*********.* .

43. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT853881 (Xanthomonas fragariae strain NBC2815 plasmid pNBC2815-21, complete sequence) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
cacgcgctcgcccgtttctgggtcgatcacct	Protospacer
   * *.*******************  ***

44. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_029106 (Achromobacter phage phiAxp-2, complete genome) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
gccgagttcgcccgtctcggggtcgaacgtct	Protospacer
*. ************.** ******** ..*

45. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042264 (Litoreibacter sp. LN3S51 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

----gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
ggtcacgga----gcccgtttcagggtcgcagacca	Protospacer
    ..***    ********* ****** ******

46. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723680 (Arsenite-oxidising bacterium NT-25 plasmid 4) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
ctgctggccgcccttttcagggtcgaagaccg	Protospacer
 **  * .***** **** ************.

47. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_FO082821 (Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
ctgctggccgcccttttcagggtcgaagaccg	Protospacer
 **  * .***** **** ************.

48. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to FN436268 (Acaryochloris phage A-HIS1, complete genome) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
atcgagtccgcccgtttctgtgtcgattccta	Protospacer
.* ****.************ *****   *.*

49. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to KU160664 (Arthrobacter phage Salgado, complete genome) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
gacgcgctcgcccgtttccgggtcgaacacgg	Protospacer
*  * *.***********.******** ** .

50. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MH617239 (Microviridae sp. isolate ctch204, complete genome) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
ctcgagctcgcctgtttctgggtcgagctgca	Protospacer
 * ***.*****.*************.   **

51. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MF140418 (Arthrobacter phage LiSara, complete genome) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
gacgcgctcgcccgtttccgggtcgaacacgg	Protospacer
*  * *.***********.******** ** .

52. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to KU160654 (Arthrobacter phage Laroye, complete genome) position: , mismatch: 8, identity: 0.75

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
gacgcgctcgcccgtttccgggtcgaacacgg	Protospacer
*  * *.***********.******** ** .

53. spacer 3.1|4856620|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MK284521 (Gordonia phage Kiko, complete genome) position: , mismatch: 8, identity: 0.75

tcctccagtgccgcgccttcgatcgcttcacc	CRISPR spacer
ggttcgaacgccgagccttcgatcgctgcacc	Protospacer
  .** *..**** ************* ****

54. spacer 3.2|4856680|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053689 (Arthrobacter citreus strain NEB 577 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agcacgaatacaaaagcagtagtcatcaactt--	CRISPR spacer
ataacgaatacaaaaccagtaatcat--attgga	Protospacer
*  ************ *****.****  *.*

55. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016593 (Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
tatgatcgcagcagcatgatggcgctgacatt	Protospacer
 .*** *************.******** .

56. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_017386 (Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
tatgatcgcagcagcatgatggcgctgacatt	Protospacer
 .*** *************.******** .

57. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_014621 (Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
tatgatcgcagcagcatgatggcgctgacatt	Protospacer
 .*** *************.******** .

58. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012909 (Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
tatgatcgcagcagcatgatggcgctgacatt	Protospacer
 .*** *************.******** .

59. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
gaggagcgcagcagcacgacggcgatgatcgc	Protospacer
*. *************.******* ***  .

60. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
cggtagcgcagcaccatgaccgcgctgcacac	Protospacer
 *  ********* ****** ****** * *

61. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MK415401 (Phage apr34_1789, complete genome) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
ggcatcagcaacaccatgacggcgctgaagca	Protospacer
**..   ***.** **************** *

62. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MK415401 (Phage apr34_1789, complete genome) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
ggcatcagcaacaccatgacggcgctgaagca	Protospacer
**..   ***.** **************** *

63. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MK415401 (Phage apr34_1789, complete genome) position: , mismatch: 8, identity: 0.75

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
ggcatcagcaacaccatgacggcgctgaagca	Protospacer
**..   ***.** **************** *

64. spacer 2.1|4845676|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 9, identity: 0.719

gtgttaactcgcgatggtggtggccatgttgg	CRISPR spacer
gaacaccgtcgcgatggtggtggccaggtagg	Protospacer
* ..    ****************** ** **

65. spacer 2.1|4845676|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 9, identity: 0.719

gtgttaactcgcgatggtggtggccatgttgg	CRISPR spacer
gaacaccgtcgcgatggtggtggccaggtagg	Protospacer
* ..    ****************** ** **

66. spacer 2.1|4845676|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 9, identity: 0.719

gtgttaactcgcgatggtggtggccatgttgg	CRISPR spacer
tcgccaactggcgatggtggtggccgtggatg	Protospacer
 .*..**** ***************.**   *

67. spacer 2.3|4845796|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MT080592 (UNVERIFIED: Staphylococcus phage vB_SauM_EW3, complete genome) position: , mismatch: 9, identity: 0.719

agagattgttgacgacatcaggatgatggggt	CRISPR spacer
agagattgtagacgatatcaggaaagatgaat	Protospacer
********* *****.******* ..  *..*

68. spacer 2.3|4845796|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MT080603 (UNVERIFIED: Staphylococcus phage vB_SauM_EW9, complete genome) position: , mismatch: 9, identity: 0.719

agagattgttgacgacatcaggatgatggggt	CRISPR spacer
agagattgtagacgatatcaggaaagatgaat	Protospacer
********* *****.******* ..  *..*

69. spacer 2.3|4845796|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MT080597 (UNVERIFIED: Staphylococcus phage vB_SauM_EW5, complete genome) position: , mismatch: 9, identity: 0.719

agagattgttgacgacatcaggatgatggggt	CRISPR spacer
agagattgtagacgatatcaggaaagatgaat	Protospacer
********* *****.******* ..  *..*

70. spacer 2.3|4845796|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MT080598 (UNVERIFIED: Staphylococcus phage vB_SauM_EW6, complete genome) position: , mismatch: 9, identity: 0.719

agagattgttgacgacatcaggatgatggggt	CRISPR spacer
agagattgtagacgatatcaggaaagatgaat	Protospacer
********* *****.******* ..  *..*

71. spacer 2.3|4845796|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MT080599 (UNVERIFIED: Staphylococcus phage vB_SauM_EW7, complete genome) position: , mismatch: 9, identity: 0.719

agagattgttgacgacatcaggatgatggggt	CRISPR spacer
agagattgtagacgatatcaggaaagatgaat	Protospacer
********* *****.******* ..  *..*

72. spacer 2.6|4845976|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgacggcacgactgtcgcgatgtttttat	CRISPR spacer
ggacgacggcactcctgtcgcgatgcatgacc	Protospacer
 ***********  ***********. *   .

73. spacer 2.6|4845976|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MT889367 (Gordonia phage Orla, complete genome) position: , mismatch: 9, identity: 0.719

tgacgacggcacgactgtcgcgatgtttttat	CRISPR spacer
gcccgacggcacgacagtcacgatgtcgttcc	Protospacer
   ************ ***.******. ** .

74. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013634 (Rhizobium sp. N324 plasmid pRspN324d, complete sequence) position: , mismatch: 9, identity: 0.719

agcaggtagacgacgcgcgcca---cagactgtgt	CRISPR spacer
agctggtagacgaagcgcgccacctcgggata---	Protospacer
*** ********* ********   *.*. *.

75. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

agcaggtagacgacgcgcgcca---cagactgtgt	CRISPR spacer
agctggtagacgaagcgcgccacctcgggata---	Protospacer
*** ********* ********   *.*. *.

76. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 9, identity: 0.719

agcaggtagacgacgcgcgccac---agactgtgt	CRISPR spacer
agctggtagacgaagcgcgccaccttgggata---	Protospacer
*** ********* *********   .*. *.

77. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_002703 (Lactococcus phage Tuc2009, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggatttcgcccgtttctgggttgactatgt	Protospacer
  *** *****************.**  *.

78. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to AF323669 (Bacteriophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggatttcgcccgtttctgggttgactatgt	Protospacer
  *** *****************.**  *.

79. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to AJ245616 (Lactococcus lactis phage BK5-T complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggatttcgcccgtttctgggttgactatgt	Protospacer
  *** *****************.**  *.

80. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to AF109874 (Bacteriophage Tuc2009, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggatttcgcccgtttctgggttgactatgt	Protospacer
  *** *****************.**  *.

81. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to AF176025 (Lactococcus phage BK5-T, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggatttcgcccgtttctgggttgactatgt	Protospacer
  *** *****************.**  *.

82. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MK448908 (Streptococcus phage Javan326, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
taagatttcgcccgtttctgggtcaaattctt	Protospacer
  .** ******************.**  *.

83. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_002667 (Lactococcus prophage bIL286, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggatttcgcccgtttctgggttgactatgt	Protospacer
  *** *****************.**  *.

84. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MF285618 (Serratia phage 2050HW, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggtaatcgcccgtttctgggtcaaatactt	Protospacer
  ** . *****************.** **.

85. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to MH617641 (Microviridae sp. isolate ctji855, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
aatgatttcgcccgtttccgggtcgaccgcct	Protospacer
.  ** ************.*******  .**

86. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_048792 (Serratia phage Moabite, complete genome) position: , mismatch: 9, identity: 0.719

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
caggtaatcgcccgtttctgggtcaaatactt	Protospacer
  ** . *****************.** **.

87. spacer 3.1|4856620|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021331 (Maritalea myrionectae strain HL2708#5 plasmid pHL2708X3, complete sequence) position: , mismatch: 9, identity: 0.719

tcctccagtgccgcgccttcgatcgcttcacc	CRISPR spacer
cgtgtcaacgccgcgccattgatcgcttcacc	Protospacer
. . .**..******** *.************

88. spacer 3.3|4856740|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to KY421186 (Flavobacterium phage FL-1, complete genome) position: , mismatch: 9, identity: 0.719

ctcagctgtaatgcgctccacgctgttgatac	CRISPR spacer
taacgctgtaaagcgctccaccctgttaaaat	Protospacer
.   ******* ********* *****.* *.

89. spacer 3.5|4856860|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015043 (Rhodovulum sp. P5 plasmid pRGUI04, complete sequence) position: , mismatch: 9, identity: 0.719

ggtgagcgcagcagcatgacggcgctgaagaa	CRISPR spacer
atcgggtagagcagcacgaccgcgctgaagaa	Protospacer
. .*.*.. *******.*** ***********

90. spacer 2.1|4845676|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_020910 (Octadecabacter arcticus 238 plasmid pOA238_160, complete sequence) position: , mismatch: 10, identity: 0.688

gtgttaactcgcgatggtggtggccatgttgg	CRISPR spacer
caaacatctctcgatggtggcggccatgttcc	Protospacer
  . .* *** *********.*********

91. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

92. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

93. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

94. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

95. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

96. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

97. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

98. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

99. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

100. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

101. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

102. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

103. spacer 2.12|4846336|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agcaggtagacgacgcgcgccacagactgtgt	CRISPR spacer
agccggtagacggcgcgcgccaccaggctcgc	Protospacer
*** ********.********** .. . .*.

104. spacer 2.16|4846576|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gtggagttcgcccgtttctgggtcgaagacca	CRISPR spacer
tccggcgatgcccatttctggctcgaagacca	Protospacer
 . *.   .****.******* **********

105. spacer 2.17|4846636|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NC_015184 (Agrobacterium sp. H13-3 plasmid pAspH13-3a, complete sequence) position: , mismatch: 10, identity: 0.688

gcattttgaggcccatcgttttgatggtcttc	CRISPR spacer
atgccgtgaggcccatctttttcatggtcgac	Protospacer
..... *********** **** ******  *

106. spacer 2.18|4846696|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134465 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 23, complete sequence) position: , mismatch: 10, identity: 0.688

atcgcatccttgacgggcttcgccagcgcaag	CRISPR spacer
aggaactcctcgacgggcttcggcagcgccgc	Protospacer
*  .  ****.*********** ****** .

107. spacer 3.4|4856800|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to KC821631 (Cellulophaga phage phi48:1, complete genome) position: , mismatch: 10, identity: 0.688

tccatcgctacggcctggttgattaccatttt	CRISPR spacer
gtagcgagtaccgcctgattgattaccatttt	Protospacer
 . .. . *** *****.**************

108. spacer 3.4|4856800|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to KC821628 (Cellulophaga phage phi18:4, complete genome) position: , mismatch: 10, identity: 0.688

tccatcgctacggcctggttgattaccatttt	CRISPR spacer
gtagcgagtaccgcctgattgattaccatttt	Protospacer
 . .. . *** *****.**************

109. spacer 2.22|4846936|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ctgacgggtcccgattttgcgctgggcgtgaa	CRISPR spacer
gatctgggtcgcgattttgcgccgggcgcagt	Protospacer
    .***** ***********.*****...

110. spacer 3.10|4857160|32|CP029126|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 11, identity: 0.656

tggagcctgaaaggtgatgcgccagctccggc	CRISPR spacer
actctcctgaacggtgatgcgccggctcgtcg	Protospacer
     ****** ***********.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

448423 : 511925

Salmonella_phage(32.26%)

portal,integrase,coat,terminase,tail

attL 450458:450475|attR 510079:510096

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF29715.1\|448423_449101_+	chloramphenicol acetyltransferase	G3CFL0	Escherichia_phage	2.1e-76	62.6
AWF32968.1\|449139_449454_+	putative nitroreductase	NA	NA	NA	NA
AWF31047.1\|449568_449880_-	yebG family protein	NA	NA	NA	NA
AWF29913.1\|449989_450604_-	tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.9e-28	34.7
450458:450475	attL	NA	NA	NA	NA
AWF31956.1\|450648_451503_-	DMSO reductase anchor subunit family protein	A0A077SK59	Escherichia_phage	2.0e-23	35.7
AWF31513.1\|451504_452122_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	1.0e-74	59.1
AWF29659.1\|452132_453791_-	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein	A0A077SK27	Escherichia_phage	1.4e-158	50.8
AWF30931.1\|453787_454570_-	molybdopterin oxidoreductase Fe4S4 domain protein	A0A077SK27	Escherichia_phage	1.6e-48	46.5
AWF31669.1\|454700_455006_-	hypothetical protein	NA	NA	NA	NA
AWF30048.1\|455108_455963_-	glycosyltransferase 17 family protein	M1I711	Paramecium_bursaria_Chlorella_virus	8.1e-25	33.2
AWF30688.1\|456155_456866_+	hypothetical protein	NA	NA	NA	NA
AWF30837.1\|456883_457444_-	spermidine N(1)-acetyltransferase	NA	NA	NA	NA
AWF29559.1\|457443_457782_-	hypothetical protein	NA	NA	NA	NA
AWF29620.1\|457932_458259_+	hypothetical protein	A0A218MNG8	uncultured_virus	7.1e-22	54.5
AWF29825.1\|458370_459585_+	mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein	Q6A202	Oenococcus_phage	2.5e-48	30.0
AWF32617.1\|459599_460619_+	zinc-binding dehydrogenase family protein	NA	NA	NA	NA
AWF29259.1\|460823_462104_-\|integrase	phage integrase family protein	B6DZ48	Enterobacteria_phage	1.6e-154	60.9
AWF29467.1\|462136_462385_-	hypothetical protein	S4TND0	Salmonella_phage	4.0e-17	54.3
AWF31382.1\|462859_463081_+	hypothetical protein	NA	NA	NA	NA
AWF32251.1\|463043_463664_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	4.2e-47	44.9
AWF28968.1\|464481_464664_-	hypothetical protein	NA	NA	NA	NA
AWF32052.1\|464678_464951_-	putative gp45	K7P7M4	Enterobacteria_phage	3.6e-19	57.1
AWF30977.1\|465162_465933_-	hypothetical protein	D5LH17	Escherichia_phage	1.8e-63	52.4
AWF32735.1\|465929_467060_-	methyltransferase domain protein	A0A060D598	Salmonella_phage	5.8e-87	48.1
AWF30706.1\|467205_467559_-	hypothetical protein	M9NYX4	Enterobacteria_phage	6.2e-56	94.0
AWF30834.1\|467630_468155_-	exonuclease	M9NZE1	Enterobacteria_phage	4.7e-100	99.4
AWF31322.1\|468307_469225_-	recombinase, phage RecT family protein	M9NZA6	Enterobacteria_phage	7.8e-159	90.8
AWF30309.1\|469234_469516_-	hypothetical protein	M9NZI3	Enterobacteria_phage	1.6e-46	95.7
AWF31070.1\|469523_470492_-	hypothetical protein	A0A077KCC0	Edwardsiella_phage	3.2e-38	74.6
AWF31790.1\|470568_470715_-	hypothetical protein	G8C7T2	Escherichia_phage	1.9e-19	97.9
AWF29140.1\|470771_470930_-	hypothetical protein	M9NZI5	Enterobacteria_phage	2.4e-20	94.1
AWF30119.1\|472072_472315_+	hypothetical protein	K7P7I0	Enterobacteria_phage	1.5e-29	94.1
AWF30574.1\|473130_473820_-	helix-turn-helix domain protein	G8C7U1	Escherichia_phage	2.7e-95	79.7
AWF31703.1\|473925_474159_+	helix-turn-helix family protein	A0A2H4FNF3	Salmonella_phage	1.1e-21	67.6
AWF29136.1\|474237_474732_+	hypothetical protein	M9NZI6	Enterobacteria_phage	1.6e-78	91.5
AWF30884.1\|475384_475594_+	DNA-binding helix-turn-helix domain protein	NA	NA	NA	NA
AWF31842.1\|475590_476370_+	replication P family protein	A0A193GYX1	Enterobacter_phage	1.8e-95	64.6
AWF32029.1\|476366_476666_+	putative protein ren	M1FPD5	Enterobacteria_phage	4.8e-17	52.6
AWF31395.1\|476907_477204_+	hypothetical protein	A0A222YYT7	Escherichia_phage	7.1e-29	63.0
AWF30909.1\|477997_478447_+	hypothetical protein	K7PGV7	Enterobacterial_phage	2.0e-46	77.2
AWF32287.1\|478875_479043_+	hypothetical protein	NA	NA	NA	NA
AWF28908.1\|479834_480143_+	putative phage protein	K7P7B8	Enterobacteria_phage	1.6e-55	99.0
AWF32596.1\|480142_480313_+	putative NinE-like protein from lambdoid prophage DLP12	K7P7K0	Enterobacteria_phage	7.7e-20	92.5
AWF31446.1\|481223_481415_+	bacteriophage Lambda NinG family protein	H6WRY9	Salmonella_phage	1.2e-21	88.9
AWF33027.1\|481554_482151_+	hypothetical protein	F1C5D0	Cronobacter_phage	8.6e-82	73.2
AWF32169.1\|482804_483110_+	putative membrane protein	NA	NA	NA	NA
AWF29981.1\|483160_483382_+	hypothetical protein	S4TNV9	Salmonella_phage	1.3e-06	40.6
AWF30607.1\|483384_483927_+	putative Peptidoglycan domain protein	A0A0U2S643	Escherichia_phage	2.1e-74	70.4
AWF31228.1\|483923_484202_+	hypothetical protein	NA	NA	NA	NA
AWF32277.1\|484170_484332_+	hypothetical protein	K7PM01	Enterobacterial_phage	9.8e-17	88.6
AWF31915.1\|484689_484833_+	hypothetical protein	NA	NA	NA	NA
AWF29297.1\|484836_485475_+	hypothetical protein	I6S676	Salmonella_phage	2.2e-115	93.4
AWF30584.1\|485505_485961_+	hypothetical protein	I6S1P9	Salmonella_phage	4.0e-63	81.3
AWF31759.1\|485957_487205_+\|terminase	phage terminase large subunit	I6RSK1	Salmonella_phage	2.7e-218	98.9
AWF31977.1\|487219_488572_+\|portal	putative phage portal protein	H6WRT0	Salmonella_phage	5.4e-209	78.7
AWF31863.1\|488630_489455_+	phage Mu F like family protein	H6WRT1	Salmonella_phage	3.0e-117	79.9
AWF33032.1\|489458_490724_+\|coat	putative phage coat protein	H6WRT2	Salmonella_phage	4.6e-226	94.5
AWF32810.1\|490736_491198_+	putative decoration protein	G0ZND8	Cronobacter_phage	4.5e-62	80.4
AWF28839.1\|491210_492308_+\|coat	putative phage coat protein	G0ZND9	Cronobacter_phage	5.6e-180	84.1
AWF31163.1\|492318_492603_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	1.7e-32	75.3
AWF32077.1\|493066_493246_+	hypothetical protein	Q5G8X7	Enterobacteria_phage	1.2e-26	91.5
AWF31612.1\|493238_493601_+	hypothetical protein	A0A1V0E5P3	Salmonella_phage	3.9e-61	90.8
AWF29118.1\|493608_494007_+	putative gp14	Q5G8X5	Enterobacteria_phage	1.3e-62	90.9
AWF31278.1\|494003_494390_+	putative gp15	A0A1V0E5P4	Salmonella_phage	2.1e-65	94.5
AWF33266.1\|494407_495142_+\|tail	phage major tail 2 family protein	H6WRU1	Salmonella_phage	2.1e-114	86.0
AWF33014.1\|495178_495832_+	putative gp17	I6R0Q2	Salmonella_phage	1.3e-112	92.2
AWF29837.1\|496553_496811_-	putative regulator protein	NA	NA	NA	NA
AWF29521.1\|497176_497893_+	BRO family, N-terminal domain protein	H6WRU8	Salmonella_phage	1.3e-47	52.1
AWF33180.1\|498002_498698_+	phage regulatory Rha family protein	A0A2I7RX10	Vibrio_phage	1.2e-13	42.9
AWF29095.1\|499014_499128_-	hypothetical protein	NA	NA	NA	NA
AWF31741.1\|499658_502004_+	putative gp21	F1C5E9	Cronobacter_phage	4.7e-107	39.4
AWF33074.1\|502047_502260_+	hypothetical protein	NA	NA	NA	NA
AWF29865.1\|502418_502664_+\|tail	phage minor tail family protein	H6WRV8	Salmonella_phage	3.7e-39	93.8
AWF32678.1\|503203_503887_+\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	2.7e-132	99.1
AWF33137.1\|504231_504465_-	hypothetical protein	NA	NA	NA	NA
AWF31986.1\|505421_508877_+	hypothetical protein	A0A1V0E5M1	Salmonella_phage	0.0e+00	57.7
AWF30079.1\|508923_509844_+	hypothetical protein	G1CSU0	Cronobacter_virus	1.4e-51	38.9
AWF33103.1\|509903_511286_+\|tail	putative tail fiber	K7P6I4	Enterobacteria_phage	2.1e-123	57.0
510079:510096	attR	NA	NA	NA	NA
AWF29042.1\|511368_511608_+	hypothetical protein	K7P7E2	Enterobacteria_phage	1.6e-23	62.8
AWF28836.1\|511607_511925_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.5e-21	51.0

DBSCAN-SWA_2

683842 : 744342

Escherichia_phage(50.0%)

transposase,integrase

attL 677180:677194|attR 745308:745322

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
677180:677194	attL	NA	NA	NA	NA
AWF29920.1\|683842_685366_+\|integrase	putative phage integrase	NA	NA	NA	NA
AWF30743.1\|685328_686999_+\|integrase	putative phage integrase	NA	NA	NA	NA
AWF31910.1\|686995_689533_+	hypothetical protein	NA	NA	NA	NA
AWF30296.1\|689525_690029_+	hypothetical protein	NA	NA	NA	NA
AWF31620.1\|690842_691190_+	hypothetical protein	NA	NA	NA	NA
AWF31245.1\|692065_692257_+	hypothetical protein	NA	NA	NA	NA
AWF32669.1\|692986_693106_+	dinI-like family protein	NA	NA	NA	NA
AWF33235.1\|693499_693943_+	hypothetical protein	NA	NA	NA	NA
AWF32513.1\|693929_697430_+	DEAD/DEAH box helicase family protein	M1IHE6	Paramecium_bursaria_Chlorella_virus	5.3e-14	24.9
AWF32364.1\|698252_699170_+\|transposase	transposase DDE domain protein	A0A1V0E8E1	Vibrio_phage	4.4e-101	59.8
AWF30810.1\|699215_702068_-	hypothetical protein	NA	NA	NA	NA
AWF29274.1\|702585_703503_+	hypothetical protein	NA	NA	NA	NA
AWF31127.1\|703547_703697_+	hypothetical protein	NA	NA	NA	NA
AWF33224.1\|704006_706688_-	AAA domain protein	NA	NA	NA	NA
AWF31492.1\|706740_707286_-	hypothetical protein	NA	NA	NA	NA
AWF32739.1\|707278_709666_-	restriction endonuclease family protein	NA	NA	NA	NA
AWF31738.1\|710279_710657_-\|transposase	putative transposase	Q71TF0	Escherichia_phage	1.3e-67	100.0
AWF31525.1\|710701_710929_-	insA N-terminal domain protein	Q71TE9	Escherichia_phage	1.1e-37	98.7
AWF32524.1\|711176_711749_+	bacterial regulatory, luxR family protein	NA	NA	NA	NA
AWF30363.1\|711892_712609_+	EAL domain protein	NA	NA	NA	NA
AWF30608.1\|712643_713279_-	fimbrial family protein	NA	NA	NA	NA
AWF30782.1\|713292_714288_-	fimbria adhesin protein	NA	NA	NA	NA
AWF32167.1\|714278_716765_-	papC C-terminal domain protein	NA	NA	NA	NA
AWF32180.1\|716776_717478_-	gram-negative pili assembly chaperone, C-terminal domain protein	NA	NA	NA	NA
AWF32269.1\|717573_718182_-	fimbrial family protein	NA	NA	NA	NA
AWF29247.1\|718511_718637_+	insA N-terminal domain protein	Q71TE9	Escherichia_phage	4.4e-17	97.5
AWF30603.1\|718658_719162_+\|transposase	putative transposase	Q71TF0	Escherichia_phage	5.7e-95	99.4
AWF29609.1\|719172_720135_-	putative sugar kinase domain protein	NA	NA	NA	NA
AWF28766.1\|720560_720950_-	hypothetical protein	NA	NA	NA	NA
AWF33238.1\|721095_721521_-	hypothetical protein	NA	NA	NA	NA
AWF30421.1\|722453_723419_+	hypothetical protein	NA	NA	NA	NA
AWF33020.1\|723434_724004_+	hypothetical protein	NA	NA	NA	NA
AWF28854.1\|724054_724468_-	acetyltransferase domain protein	NA	NA	NA	NA
AWF31531.1\|724527_724794_-	hypothetical protein	NA	NA	NA	NA
AWF31706.1\|724857_725787_-	lysR substrate binding domain protein	NA	NA	NA	NA
AWF29755.1\|725916_727305_+	sugar (and other) transporter family protein	NA	NA	NA	NA
AWF31496.1\|727326_728322_-	hypothetical protein	NA	NA	NA	NA
AWF31606.1\|728331_729318_-	hypothetical protein	NA	NA	NA	NA
AWF28911.1\|729314_729998_-	hypothetical protein	NA	NA	NA	NA
AWF31229.1\|730261_730810_+	winged helix DNA-binding domain protein	NA	NA	NA	NA
AWF32629.1\|730806_732807_-	glycogen debranching enzyme GlgX	NA	NA	NA	NA
AWF29966.1\|732897_735366_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA
AWF30397.1\|735362_737150_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
AWF29152.1\|737281_737809_+	acetyltransferase domain protein	NA	NA	NA	NA
AWF29423.1\|738007_738805_+	KR domain protein	Q06VL0	Trichoplusia_ni_ascovirus	3.6e-75	57.3
AWF31197.1\|738912_739890_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
AWF31982.1\|740005_740545_-	snoaL-like domain protein	NA	NA	NA	NA
AWF30464.1\|740699_741581_+	lysR substrate binding domain protein	NA	NA	NA	NA
AWF31795.1\|741627_742521_+	lysR substrate binding domain protein	NA	NA	NA	NA
AWF30044.1\|742511_743366_-	lysR substrate binding domain protein	NA	NA	NA	NA
AWF32935.1\|743424_744342_-\|transposase	transposase DDE domain protein	A0A1V0E8E1	Vibrio_phage	4.4e-101	59.8
745308:745322	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1084078 : 1164129

Enterobacteria_phage(26.0%)

capsid,portal,tRNA,protease,head,integrase,terminase,tail

attL 1104167:1104195|attR 1165104:1165132

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF31088.1\|1084078_1084960_-\|protease	protease HtpX	NA	NA	NA	NA
AWF33177.1\|1085153_1087202_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	7.8e-82	32.6
AWF31030.1\|1087221_1087908_-	proP effector	NA	NA	NA	NA
AWF31634.1\|1088004_1088502_-	free methionine-R-sulfoxide reductase	NA	NA	NA	NA
AWF29462.1\|1088748_1089918_+	inner membrane protein YebS	NA	NA	NA	NA
AWF29645.1\|1089886_1092520_+	mce related family protein	NA	NA	NA	NA
AWF32630.1\|1092642_1094040_+	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA
AWF31215.1\|1094146_1094386_+	hypothetical protein	NA	NA	NA	NA
AWF32815.1\|1094420_1095065_-	serine/threonine-protein phosphatase 1	Q8HA16	Enterobacteria_phage	1.3e-54	48.1
AWF31266.1\|1095232_1096213_+	hypothetical protein	NA	NA	NA	NA
AWF31576.1\|1096581_1096920_-	hypothetical protein	NA	NA	NA	NA
AWF29887.1\|1096936_1097806_-	inner membrane protein YebZ	NA	NA	NA	NA
AWF29984.1\|1097807_1098179_-	protein YobA	NA	NA	NA	NA
AWF30365.1\|1098316_1098547_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	7.0e-16	61.8
AWF32926.1\|1098889_1099309_+	putative yobB	NA	NA	NA	NA
AWF28861.1\|1099333_1099996_+	exodeoxyribonuclease 10	NA	NA	NA	NA
AWF29657.1\|1099977_1102053_-	prolyl oligopeptidase, N-terminal beta-propeller domain protein	NA	NA	NA	NA
AWF31404.1\|1102128_1102779_-	inner membrane protein YebE	NA	NA	NA	NA
AWF30712.1\|1102950_1104129_+	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
1104167:1104195	attL	NA	NA	NA	NA
AWF32660.1\|1104203_1104845_-	KHG/KDPG aldolase	NA	NA	NA	NA
AWF31583.1\|1104884_1106696_-	phosphogluconate dehydratase	NA	NA	NA	NA
AWF29558.1\|1106929_1108405_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	6.0e-76	36.2
AWF32865.1\|1108465_1108630_+	hypothetical protein	NA	NA	NA	NA
AWF33039.1\|1108761_1109631_+	SIS domain protein	NA	NA	NA	NA
AWF32205.1\|1109745_1111188_+	pyruvate kinase	NA	NA	NA	NA
AWF32993.1\|1111231_1112203_-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	NA	NA	NA	NA
AWF29029.1\|1112320_1113577_-	opacity-associated A LysM-like domain protein	A8ATH6	Listeria_phage	1.1e-14	40.9
AWF29952.1\|1113655_1114600_-	ABC superfamily high affinity Zn transport protein	NA	NA	NA	NA
AWF29397.1\|1114677_1115433_+	zinc import ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	3.0e-15	30.2
AWF29008.1\|1115429_1116215_+	high-affinity zinc uptake system membrane protein ZnuB	NA	NA	NA	NA
AWF31761.1\|1116267_1117278_-	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	2.4e-07	29.9
AWF30771.1\|1117286_1117901_-	holliday junction DNA helicase RuvA	NA	NA	NA	NA
AWF32595.1\|1117981_1118503_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AWF30251.1\|1118537_1119278_-	DNA-binding regulatory, YebC/PmpR family protein	NA	NA	NA	NA
AWF32117.1\|1119305_1119749_-	dihydroneopterin triphosphate pyrophosphatase	NA	NA	NA	NA
AWF32623.1\|1119750_1121523_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AWF33018.1\|1121785_1122352_+	isochorismatase family protein	NA	NA	NA	NA
AWF31666.1\|1122705_1122945_+	dinI-like family protein	K7PKR6	Enterobacteria_phage	7.4e-37	100.0
AWF30920.1\|1123030_1123441_-	hemerythrin HHE cation binding domain protein	NA	NA	NA	NA
AWF33089.1\|1123916_1124195_+	hypothetical protein	NA	NA	NA	NA
AWF29307.1\|1124289_1125537_-\|tail	putative tail fiber	G8C7K5	Escherichia_phage	9.5e-91	48.8
AWF29086.1\|1125601_1126570_-	hypothetical protein	G1CSU0	Cronobacter_virus	4.2e-54	40.2
AWF31511.1\|1126573_1129372_-	hypothetical protein	S4TTF5	Salmonella_phage	0.0e+00	73.4
AWF29942.1\|1129371_1129653_-	putative phage protein	S4TR39	Salmonella_phage	5.5e-39	79.6
AWF32053.1\|1129776_1130334_-	hypothetical protein	S4TND4	Salmonella_phage	1.3e-87	83.2
AWF29889.1\|1130360_1130954_-	hypothetical protein	S4TSP7	Salmonella_phage	1.3e-93	82.7
AWF32950.1\|1131018_1131888_+	hypothetical protein	NA	NA	NA	NA
AWF31406.1\|1132238_1134650_-\|tail	phage tail tape measure protein, lambda family	K7PM62	Enterobacteria_phage	2.3e-189	51.4
AWF31248.1\|1134762_1135158_-	hypothetical protein	NA	NA	NA	NA
AWF30127.1\|1135274_1135451_-	hypothetical protein	A0A286S1P2	Klebsiella_phage	8.0e-12	60.3
AWF33126.1\|1135561_1135942_-	hypothetical protein	K7PJU9	Enterobacteria_phage	4.8e-46	78.2
AWF30144.1\|1135995_1136436_-	structural protein 3	A0A286S1Q8	Klebsiella_phage	3.5e-56	71.3
AWF30715.1\|1136485_1136854_+	hypothetical protein	NA	NA	NA	NA
AWF28775.1\|1136904_1137444_-	hypothetical protein	Q9MCV1	Escherichia_phage	1.9e-80	84.9
AWF29242.1\|1137436_1137553_-\|head,tail	putative head-tail adaptor	K7PH08	Enterobacteria_phage	1.6e-13	89.2
AWF29842.1\|1137770_1137983_-	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.6e-11	66.7
AWF30459.1\|1138046_1138373_-\|head,tail	phage gp6-like head-tail connector family protein	K7PKT4	Enterobacteria_phage	2.8e-50	87.0
AWF31866.1\|1138415_1139627_-\|capsid	phage major capsid protein, HK97 family	K7PM57	Enterobacteria_phage	8.9e-195	87.2
AWF28955.1\|1139636_1140485_-\|protease	clp protease family protein	K7PH05	Enterobacteria_phage	2.4e-138	92.1
AWF31035.1\|1140498_1141803_-\|portal	phage portal protein, HK97 family	K7PJU5	Enterobacteria_phage	8.1e-234	93.5
AWF29805.1\|1141802_1143539_-	phage Terminase family protein	K7PKT2	Enterobacteria_phage	0.0e+00	100.0
AWF29598.1\|1143538_1143859_-\|terminase	phage terminase, small subunit, P27 family	K7PHI2	Enterobacteria_phage	5.8e-53	98.1
AWF32962.1\|1144327_1144456_+	putative membrane protein	NA	NA	NA	NA
AWF32637.1\|1144523_1144646_-	hypothetical protein	NA	NA	NA	NA
AWF29577.1\|1145090_1146548_-	putative glycosyl transferase	K7PKP3	Enterobacterial_phage	1.1e-271	90.7
AWF28910.1\|1146565_1146793_-	hypothetical protein	NA	NA	NA	NA
AWF32564.1\|1146803_1147481_-	hypothetical protein	G8C7Q4	Escherichia_phage	7.3e-37	55.6
AWF32104.1\|1147622_1147868_-	hypothetical protein	NA	NA	NA	NA
AWF30587.1\|1148758_1149016_-	hypothetical protein	G8C7W3	Escherichia_phage	5.1e-15	52.7
AWF32194.1\|1149082_1149217_-	hypothetical protein	K7PM01	Enterobacterial_phage	2.0e-15	83.7
AWF32592.1\|1149221_1149491_-	hypothetical protein	G8C7W1	Escherichia_phage	3.1e-31	83.1
AWF31449.1\|1149498_1150128_-	chitinase class I family protein	G8C7W0	Escherichia_phage	1.0e-101	87.6
AWF32580.1\|1150395_1150782_-	putative membrane protein	A0A192Y8P2	Salmonella_phage	3.3e-58	95.3
AWF28817.1\|1150889_1151012_-	hypothetical protein	A0A0A0YRI9	Escherichia_phage	4.1e-07	81.1
AWF30927.1\|1151041_1151467_-	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	3.6e-58	82.3
AWF28932.1\|1151740_1152523_-	antitermination family protein	F1C595	Cronobacter_phage	3.0e-111	77.9
AWF33301.1\|1152519_1153497_-	zinc-binding domain of primase-helicase family protein	F1C597	Cronobacter_phage	2.3e-169	87.7
AWF33096.1\|1153493_1155104_-	helicase domain protein	F1C598	Cronobacter_phage	8.9e-275	85.3
AWF28773.1\|1156208_1156853_+	helix-turn-helix family protein	F1C5C2	Cronobacter_phage	4.3e-79	67.1
AWF28990.1\|1157412_1157544_+	hypothetical protein	NA	NA	NA	NA
AWF31689.1\|1157723_1157948_+	hypothetical protein	NA	NA	NA	NA
AWF29437.1\|1157948_1158329_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	3.9e-40	71.8
AWF32005.1\|1158306_1158549_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	2.2e-20	68.1
AWF32972.1\|1158616_1158739_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.7e-10	78.4
AWF31477.1\|1158735_1159242_+	hypothetical protein	F1C5A2	Cronobacter_phage	1.4e-53	56.0
AWF33163.1\|1159254_1160115_+	hypothetical protein	F1C5A3	Cronobacter_phage	3.4e-132	80.2
AWF30401.1\|1160116_1160539_+	hypothetical protein	NA	NA	NA	NA
AWF31333.1\|1160531_1160777_+	hypothetical protein	Q8W657	Enterobacteria_phage	1.9e-35	86.8
AWF31305.1\|1160832_1162146_+\|integrase	phage integrase family protein	Q8W658	Enterobacteria_phage	2.6e-224	86.9
AWF29092.1\|1162172_1162898_+	hypothetical protein	Q859D1	Escherichia_coli_phage	2.1e-58	81.1
AWF32211.1\|1162949_1163345_+	inner membrane protein YecN	NA	NA	NA	NA
AWF33178.1\|1163385_1164129_+\|tRNA	tRNA (cmo5U34)-methyltransferase	A0A1S6L2V9	Erwinia_phage	6.1e-29	30.2
1165104:1165132	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1325934 : 1333679

Bodo_saltans_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF30815.1\|1325934_1326546_+	phosphoribosyl-ATP diphosphatase	A0A2H4UVM0	Bodo_saltans_virus	1.6e-14	29.3
AWF31983.1\|1326584_1327565_-	chain length determinant protein	NA	NA	NA	NA
AWF30152.1\|1327756_1328761_+	3-beta hydroxysteroid dehydrogenase/isomerase family protein	A0A2K9L0I7	Tupanvirus	1.1e-33	29.0
AWF29344.1\|1328809_1329976_-	nucleotide sugar dehydrogenase family protein	A0A1J0FA55	Only_Syngen_Nebraska_virus	4.1e-112	54.0
AWF31241.1\|1330215_1331034_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.8e-94	60.8
AWF30940.1\|1331097_1331991_-	dTDP-glucose 4,6-dehydratase	A0A291LAD7	Escherichia_phage	2.3e-86	55.9
AWF29648.1\|1332015_1332174_+	hypothetical protein	NA	NA	NA	NA
AWF28898.1\|1332272_1333679_-	6-phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	6.8e-37	28.3

DBSCAN-SWA_5

1823817 : 1841458

Enterobacteria_phage(35.29%)

integrase,tail

attL 1832312:1832326|attR 1849339:1849353

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF29385.1\|1823817_1824435_+	hypothetical protein	A0A220NRP2	Escherichia_phage	6.0e-62	71.9
AWF30979.1\|1824400_1824979_-\|tail	putative tail fiber	K7PM99	Enterobacterial_phage	1.5e-51	75.8
AWF31515.1\|1825042_1825537_-	host specificity J domain protein	Q9MCR7	Enterobacteria_phage	1.6e-17	94.3
AWF33093.1\|1826123_1826405_-	hypothetical protein	NA	NA	NA	NA
AWF32657.1\|1827034_1827754_-	nlpC/P60 family protein	K7PLS6	Enterobacteria_phage	4.0e-142	97.0
AWF30647.1\|1828245_1828368_-	hypothetical protein	NA	NA	NA	NA
AWF32554.1\|1829571_1829841_-	hypothetical protein	G8C7W1	Escherichia_phage	1.5e-30	83.1
AWF32434.1\|1829848_1830478_-	chitinase class I family protein	G8C7W0	Escherichia_phage	5.1e-101	87.6
AWF30605.1\|1830477_1830693_-	hypothetical protein	K7PKN9	Enterobacterial_phage	1.5e-12	46.5
AWF31714.1\|1830745_1830982_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	1.4e-27	84.2
AWF29898.1\|1831310_1832282_-	P63C domain protein	A9YX09	Burkholderia_phage	2.2e-71	47.6
1832312:1832326	attL	NA	NA	NA	NA
AWF31319.1\|1832923_1833166_-	antitermination family protein	M9NZB0	Enterobacteria_phage	3.0e-25	69.6
AWF32080.1\|1833734_1834835_+	putative exonuclease VIII	K7PJT5	Enterobacteria_phage	7.5e-140	83.7
AWF32000.1\|1834844_1835930_+	recT family protein	K7PKR8	Enterobacteria_phage	1.5e-105	53.5
AWF29220.1\|1835964_1836576_+	putative upf86.8	A0A077SLQ8	Escherichia_phage	6.1e-43	50.5
AWF31966.1\|1836556_1836805_+	hypothetical protein	K7PHF4	Enterobacteria_phage	8.0e-34	93.6
AWF29910.1\|1836992_1837136_+	putative excisionase-like protein	H6WRW8	Salmonella_phage	5.4e-19	95.7
AWF30990.1\|1837113_1838343_-\|integrase	phage integrase family protein	H6WRW7	Salmonella_phage	1.9e-240	98.3
AWF29231.1\|1838774_1839137_-	sigma-E factor regulatory protein RseC	NA	NA	NA	NA
AWF29860.1\|1839247_1840171_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AWF31921.1\|1840200_1840851_-	anti sigma-E RseA, N-terminal domain protein	NA	NA	NA	NA
AWF33031.1\|1840882_1841458_-	RNA polymerase sigma factor RpoE	A0A0F6TH34	Sinorhizobium_phage	8.2e-05	28.1
1849339:1849353	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1888699 : 1898390

Enterobacteria_phage(83.33%)

capsid,integrase

attL 1888627:1888650|attR 1899331:1899354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1888627:1888650	attL	NA	NA	NA	NA
AWF29591.1\|1888699_1889941_+\|integrase	prophage CP4-57 integrase	A0A1B5FPC6	Escherichia_phage	4.2e-107	49.9
AWF32135.1\|1890022_1891285_+	hypothetical protein	NA	NA	NA	NA
AWF29321.1\|1891287_1892328_+	hypothetical protein	NA	NA	NA	NA
AWF32470.1\|1892443_1892587_+	hypothetical protein	NA	NA	NA	NA
AWF31024.1\|1892592_1893156_-	polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.5e-61	66.3
AWF29245.1\|1893184_1893403_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.9e-15	62.1
AWF32613.1\|1893405_1894149_-\|capsid	putative phage capsid protein	NA	NA	NA	NA
AWF33252.1\|1894178_1894367_+	hypothetical protein	NA	NA	NA	NA
AWF30150.1\|1894734_1894953_+	helix-turn-helix domain protein	Q7M299	Enterobacteria_phage	1.5e-23	72.2
AWF31339.1\|1895168_1895501_+	ash family protein	Q7M2A7	Enterobacteria_phage	3.2e-30	64.8
AWF31109.1\|1895497_1895725_+	hypothetical protein	NA	NA	NA	NA
AWF31867.1\|1895721_1896042_+	putative p4 phage protein	NA	NA	NA	NA
AWF29155.1\|1896056_1898390_+	putative P4-specific DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.2
1899331:1899354	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2283107 : 2306628

uncultured_Caudovirales_phage(38.46%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF31357.1\|2283107_2284031_-\|transposase	transposase DDE domain protein	Q9MCT5	Escherichia_phage	1.5e-173	97.4
AWF30721.1\|2284229_2285555_+	pyridine nucleotide-disulfide oxidoreductase family protein	A0A2K5B2C5	Erysipelothrix_phage	6.5e-114	48.1
AWF32243.1\|2285780_2286008_+	insA N-terminal domain protein	Q71TE9	Escherichia_phage	5.4e-37	97.3
AWF30480.1\|2286161_2286428_+\|transposase	putative transposase	U5P0U6	Shigella_phage	5.9e-43	97.7
AWF28763.1\|2286867_2287320_+	putative RNA polymerase sigma factor FecI	NA	NA	NA	NA
AWF29830.1\|2287316_2288270_+	fecR family protein	NA	NA	NA	NA
AWF29164.1\|2288356_2290681_+	fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
AWF32122.1\|2290725_2291628_+	periplasmic binding family protein	NA	NA	NA	NA
AWF29249.1\|2291624_2292623_+	ABC 3 transport family protein	NA	NA	NA	NA
AWF30427.1\|2292619_2293576_+	fe(3+) dicitrate transport system permease protein FecD	A0A2H4IY97	uncultured_Caudovirales_phage	5.3e-17	26.1
AWF31097.1\|2293576_2294344_+	ABC transporter family protein	G3M9Y6	Bacillus_virus	9.8e-14	25.2
AWF31900.1\|2294442_2294736_+\|transposase	putative transposase	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
AWF31884.1\|2294783_2294903_-	hypothetical protein	NA	NA	NA	NA
AWF31815.1\|2295066_2295345_-	EAL domain protein	NA	NA	NA	NA
AWF28860.1\|2295618_2296641_-\|transposase	transposase family protein	NA	NA	NA	NA
AWF31031.1\|2296821_2297247_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-51	71.4
AWF29671.1\|2297259_2298549_-	arsenite/antimonite efflux pump membrane family protein	A0A2H4J144	uncultured_Caudovirales_phage	4.4e-168	71.1
AWF32186.1\|2298593_2298770_-	putative arsenical resistance operon repressor	A0A2H4J145	uncultured_Caudovirales_phage	8.5e-06	37.9
AWF30410.1\|2298999_2299698_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	7.7e-90	69.4
AWF33313.1\|2299826_2300132_-	transcriptional regulator PadR-like family protein	NA	NA	NA	NA
AWF30840.1\|2300142_2301348_-	chromate transporter, chromate ion transporter family protein	NA	NA	NA	NA
AWF29265.1\|2301523_2301925_-	putative DNA-invertase from lambdoid prophage Rac	A0A286S1P7	Klebsiella_phage	1.1e-13	34.6
AWF29411.1\|2301982_2302099_+	hypothetical protein	NA	NA	NA	NA
AWF29552.1\|2302239_2302362_-	hypothetical protein	NA	NA	NA	NA
AWF31502.1\|2302506_2304048_+	hypothetical protein	A0A1B0V7H9	Salmonella_phage	9.5e-125	46.7
AWF30178.1\|2304266_2305271_-\|transposase	transposase family protein	NA	NA	NA	NA
AWF31139.1\|2305605_2306628_-\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_8

3634654 : 3649878

Shigella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF31124.1\|3634654_3635659_-\|transposase	transposase family protein	NA	NA	NA	NA
AWF31276.1\|3635993_3637016_-\|transposase	transposase family protein	NA	NA	NA	NA
AWF29967.1\|3637608_3638691_+	periplasmic binding and sugar binding domain of LacI family protein	C6ZCU4	Enterobacteria_phage	5.5e-188	97.5
AWF32275.1\|3638804_3641858_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	95.2
AWF30665.1\|3641909_3643163_+	lactose permease	NA	NA	NA	NA
AWF29639.1\|3643219_3643390_+	maltose acetyltransferase family protein	NA	NA	NA	NA
AWF30644.1\|3643383_3643650_-\|transposase	putative transposase	U5P0U6	Shigella_phage	3.5e-43	98.9
AWF28753.1\|3643657_3643885_-\|transposase	putative transposase	U5P0U6	Shigella_phage	4.6e-36	93.2
AWF33213.1\|3644267_3644528_-	hypothetical protein	NA	NA	NA	NA
AWF31517.1\|3644584_3646648_-	tonB-dependent copper receptor	NA	NA	NA	NA
AWF31763.1\|3646730_3647051_-	hypothetical protein	NA	NA	NA	NA
AWF32704.1\|3647268_3647382_-	hypothetical protein	NA	NA	NA	NA
AWF28866.1\|3647516_3648539_+\|transposase	transposase family protein	NA	NA	NA	NA
AWF31277.1\|3648873_3649878_+\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_9

3653974 : 3678374

Shigella_phage(33.33%)

transposase,integrase

attL 3656547:3656560|attR 3679993:3680006

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWF33013.1\|3653974_3654874_+\|integrase	integrase family protein	NA	NA	NA	NA
AWF29508.1\|3654977_3655130_+	hypothetical protein	NA	NA	NA	NA
AWF32372.1\|3655383_3655590_-	hypothetical protein	NA	NA	NA	NA
AWF32998.1\|3655883_3656966_+	periplasmic binding and sugar binding domain of LacI family protein	C6ZCU4	Enterobacteria_phage	4.0e-186	96.4
3656547:3656560	attL	NA	NA	NA	NA
AWF29335.1\|3657093_3660159_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
AWF33260.1\|3660210_3661464_+	lactose permease	NA	NA	NA	NA
AWF31372.1\|3661520_3661691_+	maltose acetyltransferase family protein	NA	NA	NA	NA
AWF32320.1\|3661684_3661951_-\|transposase	putative transposase	U5P0U6	Shigella_phage	3.5e-43	98.9
AWF30223.1\|3661958_3662186_-\|transposase	putative transposase	U5P0U6	Shigella_phage	4.6e-36	93.2
AWF30617.1\|3662458_3662683_-\|transposase	putative transposase	U5P0U6	Shigella_phage	5.5e-34	98.6
AWF33140.1\|3662664_3662865_-\|transposase	putative transposase	Q71TF0	Escherichia_phage	5.3e-28	86.4
AWF30835.1\|3662891_3663119_-	insA N-terminal domain protein	Q71TE9	Escherichia_phage	2.1e-36	94.7
AWF31622.1\|3663195_3663504_-	hypothetical protein	NA	NA	NA	NA
AWF32346.1\|3663901_3664270_+	hypothetical protein	NA	NA	NA	NA
AWF28851.1\|3664715_3665081_+	hypothetical protein	NA	NA	NA	NA
AWF33212.1\|3665165_3665813_+	hypothetical protein	NA	NA	NA	NA
AWF32713.1\|3665888_3666491_+	hypothetical protein	NA	NA	NA	NA
AWF31930.1\|3666558_3666906_+	hypothetical protein	NA	NA	NA	NA
AWF29115.1\|3666987_3667974_+	hypothetical protein	A0A1V0EEV1	Caulobacter_phage	3.8e-50	40.7
AWF30455.1\|3668079_3669012_+	hypothetical protein	NA	NA	NA	NA
AWF31828.1\|3669350_3671909_+	ATPase associated with various cellular activities family protein	NA	NA	NA	NA
AWF30047.1\|3671920_3673777_+	hypothetical protein	NA	NA	NA	NA
AWF31146.1\|3674087_3675596_+	description family protein	A0A075DXT4	Acinetobacter_phage	8.3e-49	31.5
AWF29075.1\|3675662_3677282_+	integrating conjugative element relaxase, PFGI-1 class	NA	NA	NA	NA
AWF32144.1\|3677342_3678374_+\|integrase	phage integrase, N-terminal SAM-like domain protein	NA	NA	NA	NA
3679993:3680006	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029126

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection