CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029043	Streptomyces nigra strain 452 chromosome, complete genome	6 crisprs	csa3,DEDDh,WYL,cas4,Cas9_archaeal,cas3,DinG	1	3	0	0

Cas Category Instructions

Results visualization

1. CP029043

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CRISPR-Cas detection and classification

Crispr_ID: CP029043_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029043_2

2299155-2299241

Orphan

Consensus_repeat	Method
TGGCTCTGCTCACGGCGGTCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029043_2

>merge|CP029043|2|2299155-2299241|CRISPRCasFinder
TGGCTCTGCTCACGGCGGTCGGCGGCGCGTAGGCGCGTTCACGCGCTCTTCGCAGGGACCCCGTTGGCTCTGCTCAAGGCGGTCGGC

>CP029043|2|2|2299155-2299241|CRISPRCasFinder
TGGCTCTGCTCACGGCGGTCGGC	GGCGCGTAGGCGCGTTCACGCGCTCTTCGCAGGGACCCCGT
TGGCTCTGCTCAAGGCGGTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029043.1\|AWE50146.1\|2309710_2310757_+\|chitinase	unknown	unknown	gnl\|CDD\|119350
CP029043.1\|AWE54542.1\|2308540_2309548_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381302
CP029043.1\|AWE50137.1\|2295806_2297249_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236653
CP029043.1\|AWE50129.1\|2284355_2286968_+\|nitrite-reductase-(NAD(P)H)	unknown	unknown	gnl\|CDD\|184951
CP029043.1\|AWE50130.1\|2286964_2287315_+\|nitrite-reductase-(NAD(P)H)-small-subunit	unknown	unknown	gnl\|CDD\|379380
CP029043.1\|AWE50128.1\|2283144_2284356_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
CP029043.1\|AWE50144.1\|2307271_2307895_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029043.1\|AWE50131.1\|2287389_2288358_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|235737
CP029043.1\|AWE50140.1\|2301173_2302316_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
CP029043.1\|AWE50135.1\|2291316_2294037_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
CP029043.1\|AWE50134.1\|2290752_2291046_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369439
CP029043.1\|AWE50133.1\|2289274_2290432_+\|translocation-protein-TolB	unknown	unknown	gnl\|CDD\|253386
CP029043.1\|AWE50143.1\|2307059_2307275_+\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE50141.1\|2302405_2303851_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP029043.1\|AWE50145.1\|2307899_2308499_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380062
CP029043.1\|AWE54541.1\|2303993_2304701_+\|macrolide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
CP029043.1\|AWE50139.1\|2299392_2301159_+\|CDP-alcohol-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|293739
CP029043.1\|AWE50132.1\|2288434_2288884_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377566
CP029043.1\|AWE50142.1\|2304697_2306965_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225669
CP029043.1\|AWE50136.1\|2294488_2295685_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
CP029043.1\|AWE50146.1\|2309710_2310757_+\|chitinase	gnl\|CDD\|119350	cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.	9.39536e-111
CP029043.1\|AWE54542.1\|2308540_2309548_-\|aldo/keto-reductase	gnl\|CDD\|381302	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR). Schizosaccharomyces pombe aldo-keto reductase YakC is a founding member of aldo-keto reductase family 13 member A1 (AKR13A1). It catalyzes the reversible reduction of ketones to the respective alcohols using NADP(+) as a hydride donor. Rauvolfia serpentina PR is a founding member of aldo-keto reductase family 13 member D1 (AKR13D1). It catalyzes the NADPH-dependent reduction of the aldehyde perakine to yield the alcohol raucaffrinoline in the biosynthetic pathway of ajmaline in Rauvolfia, a key step in indole alkaloid biosynthesis. This family also includes Arabidopsis thaliana aldo-keto reductases, ALKR1-6.	2.62479e-144
CP029043.1\|AWE50137.1\|2295806_2297249_+\|hypothetical-protein	gnl\|CDD\|236653	PRK10137, PRK10137, alpha-glucosidase; Provisional.	3.24602e-06
CP029043.1\|AWE50129.1\|2284355_2286968_+\|nitrite-reductase-(NAD(P)H)	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
CP029043.1\|AWE50130.1\|2286964_2287315_+\|nitrite-reductase-(NAD(P)H)-small-subunit	gnl\|CDD\|379380	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.	2.18971e-45
CP029043.1\|AWE50128.1\|2283144_2284356_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	1.8295e-109
CP029043.1\|AWE50144.1\|2307271_2307895_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.10192e-11
CP029043.1\|AWE50131.1\|2287389_2288358_-\|short-chain-dehydrogenase	gnl\|CDD\|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	3.49314e-107
CP029043.1\|AWE50140.1\|2301173_2302316_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	6.87803e-131
CP029043.1\|AWE50135.1\|2291316_2294037_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
CP029043.1\|AWE50134.1\|2290752_2291046_-\|hypothetical-protein	gnl\|CDD\|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	3.99261e-10
CP029043.1\|AWE50133.1\|2289274_2290432_+\|translocation-protein-TolB	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	5.23748e-29
CP029043.1\|AWE50141.1\|2302405_2303851_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.42979e-75
CP029043.1\|AWE50145.1\|2307899_2308499_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|380062	pfam17935, TetR_C_27, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain present in putative TetR transcriptional regulators.	3.89903e-41
CP029043.1\|AWE54541.1\|2303993_2304701_+\|macrolide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.34542e-87
CP029043.1\|AWE50139.1\|2299392_2301159_+\|CDP-alcohol-phosphatidyltransferase	gnl\|CDD\|293739	cd16015, LTA_synthase, Lipoteichoic acid synthase like. Lipoteichoic acid (LTA) is an important cell wall polymer found in Gram-positive bacteria. It may contain long chains of ribitol or glycerol phosphate. LTA synthase catalyzes the reaction to extend the polymer by the repeated addition of glycerolphosphate (GroP) subunits to the end of the growing chain.	2.85307e-14
CP029043.1\|AWE50132.1\|2288434_2288884_-\|hypothetical-protein	gnl\|CDD\|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	1.227e-09
CP029043.1\|AWE50142.1\|2304697_2306965_+\|ABC-transporter-permease	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0.000870577
CP029043.1\|AWE50136.1\|2294488_2295685_-\|sugar-kinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	5.5988e-50

>CP029043.1|AWE50137.1|2295806_2297249_+|hypothetical-protein
MDRTAQLTALRAAPDIAYDPPPDAASAHVRAARVLADNWTGGSTVPARSLYPHQWSWDSAFIAIGLRHVSPLRAQTELETLLGAQWGDGRIPHIVFNPSVPLDAYFPSPDFWRSSTAGRAAGAPRTVQTSGIVQPPVHALAAWLVHRADPGLSRARGFLTRVYPRLAAWHRYLLHRRDLGGGGLASVVHPWEQGMDNSPAWDAPLARVTPAPSRTFRRADLDHGSPEDRPTDLDYGRYVRLAADYRDGGYADGGGEFAVEDPAFNALLIASEQALARIARELGATGSARQARAERLTAALIERTWDPARGIFLCRDVRGGELIPERCVSGLIPLLLPTLPRDIAGRLVRTAHGPHFGLGGTTRLAPSYDLLGEAFDPHRYWRGPAWFNTGWLLERGLRVHGEHQRAGALRAALLELAVASDFAEYVDPYTGAACGATGFGWTAALTLDLLHDDTPPAGDVAVGEAGDIEEFKGVKGGDRG
>CP029043.1|AWE50136.1|2294488_2295685_-|sugar-kinase
MSARGQVSAGELLQLVRSGRAVTRGALQQATGLSRATVGQRLDRLFRAGWLREGAGGPVGSPLGGRPSITLEFDDSHAVVLAADLETRHARAAVLSLTGEILAEHSGTLVVEDGPDAVLGDLGHWFGELLEKAGHRAEEVCGIGLAVPGPVDTVSGRVVQPPIMPGWDGYDIRGRLARAFTEATGAPPVPVLVDNDANLMAYGEQRTGFPDCSAFVLVKVSTGIGAGVVVDGSLFRGIDGGAGDIGHIRVGAEALCRCGSYGCLAAVASGGAVARRLAEDGVPAASGSDVRDLLAAGHPAASALAREAGRQVGDVLATVVTLLNPGVLMIAGDLAGTAFLTGVRELLYQRALPRSTAHLHVVTSRLGERAGLVGAGALVVEHLYAPERVEERLVALGV
>CP029043.1|AWE50135.1|2291316_2294037_-|pyruvate,-phosphate-dikinase
MSENKDPHVTKFVYDFTEGNKDLKDLLGGKGANLAEMTNLGLPVPPGFTITTEACKVYLDSGEEPAALRDEVSAHLDALEQKMGKRLGQADDPLLVSVRSGAKFSMPGMMDTVLNIGLSDKSVQGLAKQAGDDRFAWDSYRRLIQMFGKTVLGVDGDLFEEALEKAKEVKKVTVDTDLEAADLKKLVTAFKKIVKKEAGRDFPQDPREQMDLAIKAVFDSWNGDRAKLYRRQERIPHDLGTAVNVCSMVFGNLGPDSGTGVAFTRDPASGHQGVYGDYLQNAQGEDVVAGIRNTVPLAELETIDKKSYDQLMQIMETLENHYKDLCDIEFTIERGQLWMLQTRVGKRTAGAAFRIATQLVDQGLIDEAEALQRVNGAQLAQLMFPRFDETAKVEQVGRGIAASPGAAVGKAVFDSYTAVKWSRSGEKVILVRRETNPDDLDGMIAAEGILTSRGGKTSHAAVVARGMGKTCVCGAEELEVDTKRRRMTVPGGHVVEEGDVISIDGSSGKVYLGEVPVVPSPVVEYFEGRMHAGADDADELVQAVHRIMAFADRKRSLRVRANADNAEDALRARRFGAQGIGLCRTEHMFLGDRRELVERLILADTQEDREAALAELLPLQKKDFVELFSAMDGLPVTVRLLDPPLHEFLPDITELSVRVALAESRQEPHENELRLLQAVHRLHEQNPMLGLRGVRLGLVIPGLFTMQVRAIAEAAAERKNAKGDPRAEIMIPLVGTVQELEIVREEADQVIAEVEAATGTKLKLSIGTMIELPRAALTAGQIAEAAEFFSFGTNDLTQTVWGFSRDDVEASFFTAYLEKGIFGVSPFETIDKDGVGSLVAAAAKAGRATRPDLKLGVCGEHGGDPESVHFFHEVGLDYVSCSPFRIPVARLEAGRAATQSEGSDHR
>CP029043.1|AWE50134.1|2290752_2291046_-|hypothetical-protein
MWLASAASSFVPGAVRLFAERDRSLLARAVIVGGTTTRGPPRLLITADAGGANGYRTRAWRSELGARICHLPPGSRPSVYGPRVRPLCCARSELSYG
>CP029043.1|AWE50133.1|2289274_2290432_+|translocation-protein-TolB
MERRSLLRAAVLGGSTAAFGGSLWRGAAHAAPAQPGTGPYGSLGAPDTNGIRLPAGFTSRVIARSGQTVPGTSYTWHNAPDGGACYADGSGWIYVSNSEINPSGGASAVRFSATGSITAAYRILSSTRQNCAGGKTPWNTWLSCEEVSLGYVYETDPWGTKAAVRRAAMGRFKHEAAAADPVRRVIYLTEDETNGRFYRFVPTAWGDLSAGTLQVMVAGTGTSGSFTWADVPDPDGSPTVTRSQVSGSKSFNGGEGCHYADDKVWFTTKGDNRVWQLNLLSSTYELAYDDSLVSGTAPLTGVDNITGSASGDLFVAEDGGTMEICVITPDDVVAPFLRVDGQSSSEITGPAFSPDGTRLYFSSQRGTTGSSSGGITYEVRGPFRA
>CP029043.1|AWE50132.1|2288434_2288884_-|hypothetical-protein
MNPLRTPGALVAALAVAALPATAVAHDGNHPFTNCAEAYASGYSDIPRGDRHYGSHLDRDGDGLGCDSPPAGFVPAADDKTDEKASDDTASDDKETGVGAAADDTGQSDTDLAETGGSDSTPYIAAGGLVAVLAGGTVMLAVQRRRANR
>CP029043.1|AWE50131.1|2287389_2288358_-|short-chain-dehydrogenase
MARTPRLPSTPRLPGTSGWSTRDIPALDGRTAVVTGANGGIGLATARELAAHGARVVLACRSEARGAAAKDRLSGEVPGARLEVRRLDLADLGSVREFAATLPYDRLDLLVNNAGVMALPYGTTADGFETQFGVNHLGHFALTGLLLPALLAAPGARVVALSSPAHLMGNVDLRDLNSERRYRKWTAYARSKSANLLFVHELVRRLAARDADVVAAAAHPGYADTGLQAAGPRMAGSRTGERLAHLANRVFAQPATAGALPVLYAATAPGVRPDSFTGPALLNWRGAPAPAWRAPWTLDDRASALLWDASARLTGVPYEALR
>CP029043.1|AWE50130.1|2286964_2287315_+|nitrite-reductase-(NAD(P)H)-small-subunit
MTLAPEITDVKVHVRVGGHWLPVCDLARLLPGRGVAALLPDGGQVALFRDRAGRLYAIDNRDPFGGAAVLSRGLTGTHRGRPFVGSPLLKQRFDLETGQCLDDEEVRVGTYEVRAG
>CP029043.1|AWE50129.1|2284355_2286968_+|nitrite-reductase-(NAD(P)H)
MTATPGATPTIVLVGHGMVGQRFLEALAERGLTATHRVVVLCEEPRPAYDRVALTSYFSGRTPEDLSMTDMEFIETHGIELYVGDPAVAVDREARKVTARSGEVFGYDTLVLATGSYPFVPPVPNKDADGCFVYRTIEDLLAIEEYAKSRATVGAVVGGGLLGLEAAGALKGLGVQAHIVEFAPRLMPVQVDEGGGAALLRTIEDMGLSVHTGVGTQEIVVDAAGAVTGMKLSDGSELAADMVVFSAGVRPRDQLARDCGLTVGERGGIAVDEQCRTVSDPHVFAIGECALASDGRVYGLVAPGYEQAETAAATIAEDEASFTGADLSTKLKLLGVDVASFGDAHGTAEDCLDVVYSDSRAGLYKKLVVGRDGTLLGGILVGDAEAYGTLRAFTGSVPPVSPESLVLPAGAGAPAQLGPSALPDDAVICSCHNVTKGTIRGAVTEHSCTTVPEVKKCTKAGTGCGSCVKVLGQLVTAELEASGVEVDKGLCGCFGQTREELYEIVLALRITTHQDLLDRYGRDGARGGDGCEICKPTVASIIASLAPTIGASGYVLDGEQAALQDSNDHFLANLQKNGSYSVVPRIPGGEITPEGLIVIGEIARDFGLYTKITGGQRIDMFGARVEQLPLVWARLVDAGFESGHAYGKSLRTVKSCVGQTWCRYGVQDSVRMAIDLELRYRGLRSPHKLKSAVSGCQRECAEAQSKDFGVIATANGWNLYVGGNGGATPRHADLLAQDLSDGELIRLIDRFLMFYIRTADRLERTSVWLERIPGGLDHVRDVVVEDSLGICEELESLMAAHVSHYRDEWAETINDPEKLARFVSFVNAPDTPDPVVGFVPERDQIKPDLPLLSIGLRPRAEDVLEGSAQR
>CP029043.1|AWE50128.1|2283144_2284356_+|FAD-dependent-oxidoreductase
MTSNTRVVVIGAGLAGVRLARRLGELGTDVTLVGDEEHRPYNRVLLAEVLAGRYSPDVIALPEPAGLVRGRVTGVDRAARTVHLADGQSIGYGTLVLATGSNPVLPPLRGLFTPDHELPEGVHAFRTLDDCLGLSKAVRPGVRAVVIGGGLLGVSAARALALRGAQVVLAQQSERLMERQLDPAASALVRRHLTGLGVEVHTELRVRDVRCVGGAVRSVEMADGYALDADLVVLACGVHPRVGLAKAAGLEVRKGVVVDDELRTSDPHIRAVGDCAQHAGTVYGLAAPALEQADVLAEALAGDGTARYLGTRALTRLTLAGEGFFDLAAFGETEPLPGDDVVQLTDATRGTYRKVVVRDDRLVGGVLVGELGTVGALARAWEGAEPLPGDAPLLHLLTNDGGS
>CP029043.1|AWE50139.1|2299392_2301159_+|CDP-alcohol-phosphatidyltransferase
MPVFIRRGRPHRPDDETEPVGAAGEDAPGAVSRLARLGAWRTRYPLAAQGLSRSLTALAALLVIGALLLPNTLPGLRPDRFVRIPAEAILGVAVLVLLPRRPRLVAAVVYGVGLAVVTLLNLLDMGFNEYLGRGFNAALDWDLLPDAKAYVADTLGSGVATGAAVGTAVLALLLMAVLSAATVRLANLLARHRVRAGRGALVAGAVWVLCTALGLQLAGLPVASDRAAGALKVHTMRTVQSLRDEAAFAETAKADTFGNTPPDQLLPALRGKDVVFAFVESYGRSALEDPAMAPGVGRTLDKRAEALAAAGYRARSGWLTSATYGGSSWLGHSTTMSGLWIDNQRRYRTVTAGDHLTLTRAFQKSGAWDTVGVMPGVQKGWPEAEWYGLDRVYDAFDLGYRGPKFSWSTMPDQYALEAFERKVHGRPHDRPLMSFVILTSSHQPWAPIPRMVDWEDVGDGSVFGPIEKAGRRPADILTNTTESRKEYGRSIQYSVTSLTQWLERYGTKDTVLVFLGDHQPIARVSGERASRDVPISVVAKDPEVLEKIDGWRWTEGLKPAKDAPVWRMDAFRDRFLTAFGSTPHPSKG
>CP029043.1|AWE50140.1|2301173_2302316_-|tRNA-dihydrouridine-synthase-DusB
MPTTAPPVQIGPHTVQPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERNEKTMQLIHFDESEKPRSIQLYGVDPATVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVSGAGDLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIARLKEHVPEIPVLGNGDIWSAEDALRMVRETGCDGVVVGRGCLGRPWLFADLVAAFEGRTEDIARPSLREVADVMVRHATLLGEWIGEESRGVIDFRKHVAWYLKGFAVGSEMRKRLAITSSLAELRAGLDELDLDQPWPTGADGPRGRTSGNNRVVLPDGWLKDPYDCAGVGEDAELDTSGG
>CP029043.1|AWE50141.1|2302405_2303851_+|MFS-transporter
MPEPSHRRRLLILAICCMSLLIVSLDNTALNVALPALQSDLHASTSGLQWTIDAYTLVLASLLMLAGSTADRIGRKRVFMAGLVVFTIGSALCSLAPGLNSLIVFRMVQAVGGSMLNPVAMSIITNTFTNPRERARAIGVWGAVVGISMAAGPLIGGLLVETVGWRAIFWVNLPVGLAALLLTLRFVPESRAAKARRADPVGQVLVMLLFGSLTYAIIEAPTAPAAEVLVFGGLALAALVGLLVHEPRRAEPLIDLRFFRSAPFSGATVIAVSAFAALGGFLFLSTLYLQNVRGLDALHAGLWMLPMAALCFVCAPLAGRVVGNRGPRLPLLMAGASMTASGVLFAAFEAETSNVTLVLGYILFGLGFGFVNAPITNTAVSGMPRAQAGVAAAVASTSRQLGQALGVAVIGAVLASGIGTAAYRTAFVTAARPAWWIVAACGALVLLVGLLTTGTWARTTAARTADSLETPETRESARAEA
>CP029043.1|AWE54541.1|2303993_2304701_+|macrolide-ABC-transporter-ATP-binding-protein
MNSHAPNSTPRSAPVLHARDIALAYGSTPAVREADLALARGEVAAITGASGSGKSSLLYCLAGVLPVDRGTISFEGRSFAELDDDGISALRRERFGFVFQYGELLPELTIEENTALPLRLAGRRKRPALQAAVEVLDRLGIADLRERRPSQVSGGQNQRVAVARALVHRPAVVFADEPTGALDSANAGTVLEEFLQLARSQGTAVLLVTHDASVAARADSRYVMTDGVLAPEGSA
>CP029043.1|AWE50142.1|2304697_2306965_+|ABC-transporter-permease
MREFLLGLRLLLGSGRGNRVRFALMTLGGSLGVCCLALVLTIPAILDAHDGRAAARSPRLHIGKPEPGRTWVREFRDPHGSRPFGRVFVAIGGADTPEPPPGLDRLPRPGEVYVSPALHEQLRREPGLSGLVPGTEKGLIGAAGLTDPDELYAYVGATRHQLGAEARALKGFGKGYPPSRVVDPSTLEALRFTLATLVLLPLAVFLSVCAKLSAASRNRRLAALRLLGLSTKGTQRVNAAETVVAALLGAALGLGEFWLLNQIVARTGLPGLKWYAADGAVSAGTAALCLLGCPALAWFVGRASARAAARAPLATRRTAVPRAPRARWGLLFVTGLGVTAGYAATGLREHPARSDGLNALLMPAGILMTGLGLVLALPLLSYLPARRLARSGNLALSLAMRRNEVEPGSALRVVSGLVLLVFSASLAQGVLVELNQVSRTTSPTQEYGLPTAQLSGDQQRRLRETPGVDTSAVVMAFDDDLDSDSDDDQADALVATCAQLTALTRRVEGCVDGEVMRLSDPNTGDEPFGTSTFALRKDGRPLSLRVPVPEDTVRYTGPGVTHVSNAALLVPPGKLPPGAVPVSATLVLASSSDPSTVRAVLDAIGGIAPTAEVDPAGVNIEALQQLTVIKTLLVAGMVMGLVIGVAAFLVSVTDRAVERRSQVTALALLGARPRVLRTVQCLQVVLPLTVGLVLALVAGKLAETAYLVTGGGEVLWDGAGVPVLVVSALGVLVAAAVGTLPLTGRRIDPEAIRRD
>CP029043.1|AWE50143.1|2307059_2307275_+|hypothetical-protein
MLEINTSKVSRWDQHGRVHVVHVVRKGPQRTLRCETCGWRRAAQFLPWLKAEEHLAEAHQATVDPTETQHG
>CP029043.1|AWE50144.1|2307271_2307895_+|GNAT-family-N-acetyltransferase
MTSHVRLYQPGDRAAVEDICVRTAHVGGDSRPYYEDPGVFPAAFALPYVVLEPELAFVVDDGRGRAVGYVVGTADTARFVKEYRAAWLPRIAGRYPDPVEPRTPDEEIARLLHTPERMLVPEVAGYPAHLHIDLLPGWQGKGYGRVLMHTLFRALRERGVPAVHLCMVTANTAARAFYDRLGFHEIPVPDAGPVTYLGRTTETTGAV
>CP029043.1|AWE50145.1|2307899_2308499_-|TetR-family-transcriptional-regulator
MPSTSPTLTAERILEATEEVLRRHGPAKATVVDVARALGVSHGSVYRHFRTKAALREAVTKRWLDRTTGLLADIAGAPGRDAEVRLREWLAALFAAKRRKAFDDPELFATYSVLTTETAETVVSEHIADLTGQLTAIVRDGVESGVFTAADPAVAAVAVFRATDRFHDPHYAREWEQPGVQDDFDALVGLLLRGLRARD
>CP029043.1|AWE54542.1|2308540_2309548_-|aldo/keto-reductase
MTMRTRPLGTTGPQVSALGLGCMGMSALYGDADRTESIATIHAALDAGVTLLDTGDFYGMGHNELLIGEALRTAPAQLREKAQVSVKFGALRGPDGEWSGFDGRPAAVKNFAAYSLQRLGVDHIDVYRISRLDPEVPIEETVGAIAELIEKGHVRHVGLSEVGAETIRRAAATAPVTDLQIEYSLISRGIEKEILPTTRELGISITAYGVLSRGLISGHFTRDRQLAAQDFRAHSPRFQGDNLRHNLDLVDALRKIAERKGVSVAQIAIAWVLSRGEDIVPLVGARTRERLTESLGALDVTLDEADLTAIEEAVPPGAAAGDRYPAPQMAHLGTE
>CP029043.1|AWE50146.1|2309710_2310757_+|chitinase
MLRRALRVLAAALTTAALAQLPVAAPASAADTCAVKPKPAGKVLQGYWENWDGAANGVHPPFGWTPITDSRIARHGYNVINAAFPVIRSDGTALWEDGMDSGVKVATPAEMCAAKAAGATILMSIGGATAGIDLNSTAVADRFVDTIGPILKRYNFDGIDIDIETGLTGSGNIGQLSASQANLIRIIDGILARMPSGFGLTMAPETAYVTGGSVVYGSIWGAYLPIIKKYADNGRLWWLNMQYYNGSMYGCSGDSYQAGTVQGFVAQTDCLDKGLVVQGTTIRVPYDKQVPGLPAQPGAGGGHMSPSQVGEAWRHYGGALKGLMTWSLNWDGSKNWTFGDNVKALQGR

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Crispr_ID: CP029043_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029043_3

2724328-2724395

Orphan

Consensus_repeat	Method
TCGGATCCGGCGGTCTCAGATCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029043_3

>merge|CP029043|3|2724328-2724395|CRISPRCasFinder
TCGGATCCGGCGGTCTCAGATCCGGCGGTTCGGGATCCGGCTTCTCAGATCCGGCGGTCTCAGATCCC

>CP029043|3|3|2724328-2724395|CRISPRCasFinder
TCGGATCCGGCGGTCTCAGATCCG	GCGGTTCGGGATCCGGCTTC
TCAGATCCGGCGGTCTCAGATCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029043.1\|AWE50478.1\|2732987_2734409_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP029043.1\|AWE50475.1\|2730115_2730973_-\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	unknown	unknown	gnl\|CDD\|223257
CP029043.1\|AWE50471.1\|2726371_2727196_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE50469.1\|2723659_2724223_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE50467.1\|2721879_2722911_-\|endoglucanase	unknown	unknown	gnl\|CDD\|376532
CP029043.1\|AWE50466.1\|2719872_2721810_+\|galactose-oxidase	unknown	unknown	gnl\|CDD\|199882
CP029043.1\|AWE50473.1\|2728492_2729566_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
CP029043.1\|AWE50464.1\|2715726_2717154_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366659
CP029043.1\|AWE50470.1\|2724416_2725196_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
CP029043.1\|AWE54577.1\|2732391_2732919_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP029043.1\|AWE50462.1\|2713777_2714383_-\|chitin-binding-protein	unknown	unknown	gnl\|CDD\|376983
CP029043.1\|AWE50465.1\|2717875_2719876_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133043
CP029043.1\|AWE50472.1\|2727325_2728444_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224851
CP029043.1\|AWE50468.1\|2722988_2723657_-\|class-F-sortase	unknown	unknown	gnl\|CDD\|320678
CP029043.1\|AWE50477.1\|2731975_2732287_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE50463.1\|2714502_2715633_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259800
CP029043.1\|AWE50474.1\|2729562_2730069_+\|heme-degrading-domain-containing-protein	unknown	unknown	gnl\|CDD\|179430
CP029043.1\|AWE50461.1\|2713178_2713682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237674
CP029043.1\|AWE50476.1\|2731133_2731856_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376730
CP029043.1\|AWE50460.1\|2712020_2712779_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332

Protein	Function_ID	Function_description	E-value
CP029043.1\|AWE50475.1\|2730115_2730973_-\|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.97847e-93
CP029043.1\|AWE50478.1\|2732987_2734409_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.67118e-26
CP029043.1\|AWE50467.1\|2721879_2722911_-\|endoglucanase	gnl\|CDD\|376532	pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.	1.92702e-91
CP029043.1\|AWE50466.1\|2719872_2721810_+\|galactose-oxidase	gnl\|CDD\|199882	cd02851, E_set_GO_C, C-terminal Early set domain associated with the catalytic domain of galactose oxidase. E or "early" set domains are associated with the catalytic domain of galactose oxidase at the C-terminal end. Galactose oxidase is an extracellular monomeric enzyme which catalyzes the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalyzing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminal domain of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others.	1.73661e-31
CP029043.1\|AWE50473.1\|2728492_2729566_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	5.32091e-105
CP029043.1\|AWE50464.1\|2715726_2717154_-\|hypothetical-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.3052e-05
CP029043.1\|AWE50470.1\|2724416_2725196_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.01847e-133
CP029043.1\|AWE54577.1\|2732391_2732919_-\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	3.24473e-25
CP029043.1\|AWE50462.1\|2713777_2714383_-\|chitin-binding-protein	gnl\|CDD\|376983	pfam03067, LPMO_10, Lytic polysaccharide mono-oxygenase, cellulose-degrading. This domain is found associated with a wide variety of cellulose binding domains. This is a family of two very closely related proteins that together act as both a C1- and a C4-oxidising lytic polysaccharide mono-oxygenase, degrading cellulose. This domain is also found in baculoviral spheroidins and spindolins, protein of unknown function.	7.58387e-73
CP029043.1\|AWE50465.1\|2717875_2719876_+\|glycosyl-transferase	gnl\|CDD\|133043	cd06421, CESA_CelA_like, CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.	8.28823e-80
CP029043.1\|AWE50472.1\|2727325_2728444_-\|hypothetical-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.05337e-44
CP029043.1\|AWE50468.1\|2722988_2723657_-\|class-F-sortase	gnl\|CDD\|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	1.02695e-47
CP029043.1\|AWE50463.1\|2714502_2715633_-\|hypothetical-protein	gnl\|CDD\|259800	cd03402, SPFH_like_u2, Uncharacterized family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes an uncharacterized family of proteins similar to stomatin, prohibitin, flotillin, HflK/C (SPFH) and podocin. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Many superfamily members are associated with lipid rafts. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease, and in cancer invasion and metastasis. Mutations in the podocin gene give rise to autosomal recessive steroid resistant nephritic syndrome.	1.70356e-76
CP029043.1\|AWE50474.1\|2729562_2730069_+\|heme-degrading-domain-containing-protein	gnl\|CDD\|179430	PRK02487, PRK02487, heme-degrading domain-containing protein.	7.8968e-87
CP029043.1\|AWE50461.1\|2713178_2713682_-\|hypothetical-protein	gnl\|CDD\|237674	PRK14326, PRK14326, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0.000924188
CP029043.1\|AWE50476.1\|2731133_2731856_-\|hypothetical-protein	gnl\|CDD\|376730	pfam02096, 60KD_IMP, 60Kd inner membrane protein.	5.99783e-35
CP029043.1\|AWE50460.1\|2712020_2712779_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.23553e-22

>CP029043.1|AWE50469.1|2723659_2724223_-|hypothetical-protein
MGSLRVTLSAVAVLGAVSAVPAAHAADGGVSVGPSTAAPGDDVALRVSGCPGRTATAVSKAFVADARLTVGEDGALRGESRVRSTLKDGRYGVRVGCGDTTRTGSVSVARRAARPSTAQRHGALPSPAAAGPTAPVRAGGGGATRLAMIDAREDGPGTAHTVTGLVLAGVAATAVALRSARRSRRPR
>CP029043.1|AWE50468.1|2722988_2723657_-|class-F-sortase
MTAQHGRTGLGGRVLTGTVWAALLLGLWLWGWEVTDVRPRPSAPPTAGTLIPAGPPPHVRLPPAARPLGDAVPQRIEIPSLGVRAPVVARGLDAHGAIDPPPYRQAAAVGWYAAGTAPGAAGPALMVGHADTETRPAVFHRLAALRPGARVRVLRADGEVAEFTVDDVRVVERDRFDARQAYGPHHPGRPELRLLSCAGVFDRATRTYAANVVVSAYLTGRG
>CP029043.1|AWE50467.1|2721879_2722911_-|endoglucanase
MYQKRGAWGVARARTSAVLLGAALLIAGCSSGDDGDTPDGENAAGISQQPKEKNPFWVNPDGNAAQQVAAYEKDGKKEDAEQIRKIAEQPTGEWIGPEKPEDEARGYTTAAAKADRTALLVLYNIPHRDCGQYSQGGAADGDTYREWIDGVAKGIGDRGATVVLEPDAVLHLVDGCTPDEFHEERYDLLKGAIAKLKSLKNTKVYLDAGNAGWGHPDQIFEPLKWAGIDQADGFAVNVSNFYTTKDSIAYGKELSARVGDKPFVVDTSRNGNGPYTGGDPNERWCNPPGRALGEAPTTKTPDPLVDAFVWVKRPGESDGECKGGPKAGEWWAKYALTLAKASK
>CP029043.1|AWE50466.1|2719872_2721810_+|galactose-oxidase
MNDRAGRRRARRLAIGTAVVLALAGMNGPWLYRVGTEKYHQYQINRPEYKAENGKWEIVEFPEEYRQNTIHAALLHTGKVLLIAGSGNNQDNFDAKQYDTRIWDPVKGTIKKVPTPNDLFCTGHTQLANGNLLIAGGTKRYEKLKGDVTKAGGLMIVHNENPDKPITLPAGTKFTGKANGKTFVSKDPVLVPRAKKVFDKATGEFLRNDPGLGRIYVEAQKSGAKYETGTQDNYRIQGLSGADARNTYGIAQKLALDKKDFQGIRDAYEFDPVAEKYIKVDPMHEARWYPTLTTLSDGKILSVSGLDDIGQLVPGKNEVYDPKTKKWTYLDKLRQFPTYPALFPMLNGKIFYSGSNAGYGPDDVGRDPGIWDVETNKFTKLPGLSDAKLMETSGTVLLPPAQDEKYMVVGGGGVGESKESSEKTRLIDLKDDSPRFVDGPSLEKGTRYPQTSVLPDDSVLVSGGSEDYRGRGDSDILQAHLYRPGANELDRVADPLVGRNYHSGSILLPDGRVMFFGSDSLYADKANTKPGKFEQRIEIYTPPYLYRDAQPTLSGGPQTIKRGGKGTFTSQHAAAVKNVRLIRPSASTHVTDVDQRSVKLDFQASGDKLTVTVPTNRNLVPSGWYMLFVTDDQGTPSKAQWVRVP
>CP029043.1|AWE50465.1|2717875_2719876_+|glycosyl-transferase
MTSTPTGARRDFDPSQTTQLRVPTHRTGAFRRIKKTLPKYDYEHYSRLAGPLTQPDPNKPYRVQYRSLISQEPHRIRVALMLAAAPVLSLVLLFWLLQPEHWTERDYPAFDWLPALDIVMLVSIGLIEFFRCMNVLSNAHATLVARDPIPVVPETGTRVAFLTSFVPGKEPLEMVTKTLEAAVKLRHRGLMHVWLLDEGDDPEVKEVCARLGVRHFSRKGIAKWNQAKGPHRAKTKHGNYNAWLDAHGDDYDFFASVDTDHVPLPNYLERMLGFFRDPDVGFVIGPQVYGNYDNFVTKAAESQQFLFHALIQRAGNKYGSPMFVGTSNAVRIKALKQIGGLYDSITEDMATGFEIHRHKNPATGRKWRSVYTPDVLAVGEGPSAWTDFFTQQMRWSRGTYETILKQYWKGWYSLPPSKLFNYTMMIIFYPMSALNWILAALSCALFLGLGASGVNIDPTIWLMLYGNASALQIGLYVWNRRHNVSPHEPEGSGGVAGMVMSALSAPLYAKALIDSMLRKKSKFVVTPKGDSASPDRWFGTFRYHWYFIAIFGASITAGFVYGHSHPAMIIWATFAMLITATPIFAWRYMLRQEKKKPAAHAAPPGGQQDAAPAAGPAVPYQPQPLPAHATPHAPHGQQKPTWAASGSGGNDQTMQIALGGLGGRKE
>CP029043.1|AWE50464.1|2715726_2717154_-|hypothetical-protein
METRTPVFEEFDPASDCDCPGCVHWRRVLPYSTTGRHPAAYRALVLAAAASTTLAAGHAAAAAAPQAPDRPGVPAGDEPGTPQGQKAPLHGPGGTPAAPTSAAETPSTTRKEIIDRAKKWVAAKVPYSMYKFWSDGYRQDCSGFVSMAWSLPGNEWTGSLAQYGVRITKKDLQPGDILLFHNPADPQKGSHVVLFGGWADDTHSSYVAYESAPPHARRQTTPYAYWNHSDRYLAYRYKGLVKGATGTKADTKADTAGPEPDKSVEPAKPVEPVEPDGPAKPEGPEKAQPPRAAGSAGGAAYPGRAYFEPGANNKHVTRLGRMLLERGAGPYHTSGPGSRWTDADRRATRAFQQAQGWRGQDADGLPGPATWKLLVTGTGKDVRAGAGGPERPASHGVPGYPGRAAFRPGADNEYVTRLGERLVRKGFGRYYTSGPGPRWGEADRRAVEAFQRAQGWRGGAADGYPGPETWRRLFA
>CP029043.1|AWE50463.1|2714502_2715633_-|hypothetical-protein
MTTTTSHTPEPDGLEGPAEAPVRPARLIQNEVTTEIPVHLLFRDEPDPVAVPLRPTVVARRQGTGEQPRVRRPVQTKPRPELRVDPELVERPARVLPGAVGLIAGMCAAAGALVTSWWAGVLPPAAAHALGFPAVAGAGLGPAQWAAYTGAGALGLFGFGGLARGRTGGAWVLGMFGRYRGTVRRTGLLWVNPLLLRRRVDVRLRHWRSEPMQAADGSGVALRAVVLVVWRVRDTARATLAVDDHESYLRECVEAALARVPVETPGASRGAVEASGDALTRLVLRDAGAVGLEVFSVRPLRVEYAPEVAAAMNRRRIAVLDAQNRATVLTSVVDSVEDTVTRLTTRGLVDLDDYERKALVKDLTVAFCSGRGDTAG
>CP029043.1|AWE50462.1|2713777_2714383_-|chitin-binding-protein
MRRRTKLYAAALGLTTAGALALSTQGASGHGYTDLPISRQKLCQNGSVANCGSIQWEPQSVEGPKGFPGGGPADGQICNAGLGQFSQLSAPKTPSGAAWPTTRVTGGQNYTFRWQFTAMHATTDFRYYVTKQGWNENHNLSRSDLNLTPFFTVPYNGQRPPSTLSHSGRLPTGLSGHHVILAVWTIADTGNAFYACSDVTF
>CP029043.1|AWE50461.1|2713178_2713682_-|hypothetical-protein
MDALFYVVPCLILAGVLFVGYRVTRRSGEIRAAWNSGLTAEGRCLRTFTTTHGGGNDTSVHTTLHHVYEFTARDGRVVRFEEEGGQATTVEGDIVTVHYTEGARIVATARRPSRAGLAASTVGVLAILGVVAAICVGFMITYHDMSSEFPFGDDTTDTGESVIIEGS
>CP029043.1|AWE50460.1|2712020_2712779_+|IclR-family-transcriptional-regulator
MALQHEPTTPYHSAQDALRVLETVVRHGTGVTGTELARQTGIEQERLTGLLRMLRREGYVEQVTDGAYVAGEALARLGSAESRERALRENLQRTLDRLRDSVGAAVYVSRYVDGEIRIDQFAAGPATPVVNEWVDFRYSAHATAIGKSLLGQLDHNGRRDHLSRHKMARLTSRTITSDKVLLSRLESQPPTVPHLDLQEYAVGTVCAAVPITAGSSVGCLALSLPVRHAHRLRQAADALNRNAAPVLLSLAI
>CP029043.1|AWE50470.1|2724416_2725196_-|TIGR01457-family-HAD-type-hydrolase
MADRKPIESWLTDMDGVLIHEGVPIPGADAFITKLRDSGRPFLVLTNNSIYTPRDLHARLNRMGLNVPLENIWTSALATAQFLDDQRPGGSAYVIGEAGLTTALHDIGYILTDHEPDYVVLGETRTYSFEAMTKAVRLINAGARFICTNPDETGPSAEGPLPATGAVAALITKATGKQPYFAGKPNPLMMRTGLNAIGAHSETSAMIGDRMDTDVLAGMEAGMQTFLVLTGLTRPEQVEHFPYRPSQVVDSIADLVERI
>CP029043.1|AWE50471.1|2726371_2727196_-|hypothetical-protein
MFMRLHTPVPLCLAAAAVLAVAPPVRAEPVAPGCAGDGRSFPLATRLHGGPESYTAGGGFGTWYLDLENRTGRTCTGIHPVVVLVDAGRSLTPSQPRLEFYPGGRDDRPRPVRFETTDQDELVGAFDGFPGFTVGPRKTVSVKVRLALTSDAAPNEVTANAAVVQRHDGDGDWVGQSNDYRFKVEAAPTDGDDPSAAPDRDGTDDPTGPAEQDASAPPADPDASPSPSEPPQERLTLADELARTGLTSPPGVTFTTTVALLLAGATLLIARRRR
>CP029043.1|AWE50472.1|2727325_2728444_-|hypothetical-protein
MGGVNRTESGAGGVNLGALRSHNTALVLDLLRTAGPDGISRLELAERTGLTPQAVSKITARLREDGLAAEAGRRASTGGKPRTVLRLVPDAGHAVGVHLDRDELTVVLCDLTGAVVARRAAPLDLGADADSVVDRLVAEVNGLVSGAARPGPVLGVGVALPGPLDHRRGVLHRVTGFPEWNGFPLRSVLLRRLSLPVVVDKDTNAAALALAVGPPETAGTSFAYLHFGAGLGGGLVIGGTVHRGTRTGAGEFGHQVVQLDGPPCGCGNRGCVEALCLAAVARGDTAEAARVLGTAAGNLVALLDVDLVLLGGRTVAAAPDTFVDGVTAVLDARAARAGEEAIPVRLAPTAADAVAEGAAQLLLAPLFGRAEG
>CP029043.1|AWE50473.1|2728492_2729566_+|oxidoreductase
MSATPLRVGLVGYGLAGSVFHAPLIATTEGLTLDTVVTSNPERQRQARAEHPDVRVAASPDELLARAGDLDLLVVASPNKTHVPLATAALKAGLPVVVDKPLAGTAAEARELAALAEERGLLLSVFQNRRWDNDFLTLRRLLEDGELGDVWRFESRFERWRPQTKGGWRESGDPAEIGGLLYDLGSHVVDQALVLFGPVTQVYAEADVRRPGAETDDDTFLALTHAGGVRSHLYVSATTAQLGPRFRVLGSKAGYVKHGLDPQEAALREGRRPGDGADWGTEPEELYGRLGAGESPVTGGGSPVPTVPGDYPAYYAAVAAALRDGGPNPVTALEAAAALDVLEAARRSARDGVTVTL
>CP029043.1|AWE50474.1|2729562_2730069_+|heme-degrading-domain-containing-protein
MTHTSGPTPKFQPELTPSLEELEAQERRLVFPRFTYEDAWALGSLLVELARERQAPVAVDIHRAGQQLFHAALPGSTPDNDAWIARKRRVVERYGASSYLVGARCRAKGTTFEDSSRLDPDVYAAHGGSFPITVEGVGVVGAVTVSGLPQLADHRMVVEALETFLAKQ
>CP029043.1|AWE50475.1|2730115_2730973_-|2-hydroxyhepta-2,4-diene-1,7-dioate-isomerase
MKLLRVGTAGSERPALLDAEGILRDLSGLVPDIDGPLLADPAALGRVRAAAGTGELPALDPEGLRIGPPLARIGKIVCIGLNYHDHARETGAEPPSEPVVFFKAPDTVVGPDDTVLVPRGSAKTDWEVELAVVIGRTARYLESAEEGLAHVAGYAVAHDVSEREFQIERGGTWDKGKNCETFNPLGPWLVTADEVPDPQDLALRLWVNGELKQDGTTAEQIFPVGEVVRYVSHFMTLYPGDVINTGTPAGVALGRPEPKPYLRAGDVVELEIEGLGRQRQEFEQA
>CP029043.1|AWE50476.1|2731133_2731856_-|hypothetical-protein
MSVFADLVQRLADLLTPLFGATAAAAAIVLFTALVRLLVHPLSRAAARGQKARTELQPKIAELRKRHGKNPERLQRAIVELHTKEKVSPLAGCLPGLFQLPAFFLLYHLFSNTTIGGHANELLSHALFAAPLGDRWADALGAGGALGPAGLVYLALFLLVAVVAVFNYRRTKRMMAANPVAPVADGQAVPGMGAMGAMTKVMPFMSFLTLFTVAVVPLAAALYVVTSTTWSAIERAALYR
>CP029043.1|AWE50477.1|2731975_2732287_-|hypothetical-protein
MIRIAARLRPAALLVVLFLEITLLDTGSLSATVALAATAAASSAFAACSLLASRAAPAVPPTRVRTAIRDRARRTAFLPQRDPDASGRPRPRAPGHALPATTA
>CP029043.1|AWE54577.1|2732391_2732919_-|transcriptional-regulator
MALGKDYATQDCSIARALEVVGERWTLLVVRDALYGVRRYNDFLVHLGIPRAVLAARLQTLTTEGVLAKRRYQESPPRDEYVLTDRGVALWPTLRALGMWGREHFGDRPLRVFRHAPCGTGLGAYGECPACGIVVPAADVEMLPGPGLDPEPADPVSRALLRPKRLLEPLELEPA
>CP029043.1|AWE50478.1|2732987_2734409_+|MFS-transporter
MPKFTERTDVAAAPGPTAVATSPPAEEASPRSGRATLALTSAATAVALMTYTAPMVTLPETAADLHTPLSAQAWLLNGTPLGLAAVLLVAGSLADDYGRRRIFVAGTLALGVTTALGALTSSTWLFTLARVAQGGASAALLASSLGLIVHAFPSPRGRLHATGVWGAFVSGGIAVGPLVAGAMPDWRVTYAVLGAAALVVAGLSRRALTESRAPRGGRPDLAGAVTFGLALVSLVAALTLGRDGWLRAPVALLLLATVLLLGLFAVVERRTATPMIDLGLLRRPGFLASSTGGLFTGFAVIGLFSLLPTLLQQTLGLSAMDTAWLFLLWSGLSFAVALQARRLAGRMAPRLQLALGFALHAAGALALLGALGSGTWTRLLPGLIVAGVGSGLLNAALPLLSVESVPPQRAAMGSGAQQTFRYIGSCAGVALTIAVVTSTKGGLAHGGDIALVVSAVLALVAAAAVAALRERTA

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Crispr_ID: CP029043_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029043_6

4395062-4395146

Orphan

Consensus_repeat	Method
GTCCCCGCACCCCACCACGTGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029043_6

>merge|CP029043|6|4395062-4395146|CRISPRCasFinder
GTCCCCGCACCCCACCACGTGAGCTCCTGAGCTCCTGAGGCGAACCCGCCCCACCGTCGCCGTCCCCGCACCCCACCACCTGAGC

>CP029043|6|5|4395062-4395146|CRISPRCasFinder
GTCCCCGCACCCCACCACGTGAGC	TCCTGAGCTCCTGAGGCGAACCCGCCCCACCGTCGCC
GTCCCCGCACCCCACCACCTGAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029043.1\|AWE51838.1\|4403229_4403535_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340853
CP029043.1\|AWE51828.1\|4393925_4394321_+\|YccF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236975
CP029043.1\|AWE51830.1\|4395213_4396479_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
CP029043.1\|AWE51833.1\|4398022_4399393_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP029043.1\|AWE51822.1\|4386058_4386622_+\|NADH-quinone-oxidoreductase-subunit-I	unknown	unknown	gnl\|CDD\|235637
CP029043.1\|AWE51820.1\|4383023_4383680_+\|NADH-quinone-oxidoreductase-subunit-B	unknown	unknown	gnl\|CDD\|235797
CP029043.1\|AWE51831.1\|4396627_4396894_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
CP029043.1\|AWE51837.1\|4402396_4403140_-\|DNA-methylase	unknown	unknown	gnl\|CDD\|223348
CP029043.1\|AWE51821.1\|4385087_4386056_+\|NADH-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl\|CDD\|376297
CP029043.1\|AWE51835.1\|4400094_4401570_-\|ATP-binding-protein	unknown	unknown	unknown
CP029043.1\|AWE51826.1\|4391304_4392828_+\|NADH-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|235603
CP029043.1\|AWE51825.1\|4389733_4391308_+\|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl\|CDD\|273903
CP029043.1\|AWE51839.1\|4403777_4404029_+\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE54708.1\|4386654_4387356_+\|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl\|CDD\|376343
CP029043.1\|AWE51824.1\|4387732_4389727_+\|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl\|CDD\|235836
CP029043.1\|AWE51834.1\|4399452_4399641_-\|excisionase	unknown	unknown	gnl\|CDD\|225848
CP029043.1\|AWE51823.1\|4387355_4387736_+\|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl\|CDD\|180218
CP029043.1\|AWE51836.1\|4401572_4402400_-\|DNA-primase	unknown	unknown	gnl\|CDD\|214927
CP029043.1\|AWE51827.1\|4393068_4393929_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235102
CP029043.1\|AWE51832.1\|4397051_4397540_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|213038

Protein	Function_ID	Function_description	E-value
CP029043.1\|AWE51838.1\|4403229_4403535_-\|hypothetical-protein	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0.00558103
CP029043.1\|AWE51828.1\|4393925_4394321_+\|YccF-domain-containing-protein	gnl\|CDD\|236975	PRK11770, PRK11770, YccF domain-containing protein.	2.17785e-57
CP029043.1\|AWE51830.1\|4395213_4396479_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.55233e-51
CP029043.1\|AWE51833.1\|4398022_4399393_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.4666e-15
CP029043.1\|AWE51822.1\|4386058_4386622_+\|NADH-quinone-oxidoreductase-subunit-I	gnl\|CDD\|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	1.90284e-39
CP029043.1\|AWE51820.1\|4383023_4383680_+\|NADH-quinone-oxidoreductase-subunit-B	gnl\|CDD\|235797	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB.	8.44995e-88
CP029043.1\|AWE51831.1\|4396627_4396894_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	4.6057e-12
CP029043.1\|AWE51837.1\|4402396_4403140_-\|DNA-methylase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	4.87019e-05
CP029043.1\|AWE51821.1\|4385087_4386056_+\|NADH-quinone-oxidoreductase-subunit-H	gnl\|CDD\|376297	pfam00146, NADHdh, NADH dehydrogenase.	5.43518e-110
CP029043.1\|AWE51836.1\|4401572_4402400_-\|DNA-primase	gnl\|CDD\|214927	smart00943, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	8.85669e-18
CP029043.1\|AWE51826.1\|4391304_4392828_+\|NADH-quinone-oxidoreductase-subunit-N	gnl\|CDD\|235603	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN.	6.19972e-103
CP029043.1\|AWE51825.1\|4389733_4391308_+\|NADH-quinone-oxidoreductase-subunit-M	gnl\|CDD\|273903	TIGR01972, NADH-quinone_oxidoreductase_subunit_M, proton-translocating NADH-quinone oxidoreductase, chain M. This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport].	6.0912e-168
CP029043.1\|AWE54708.1\|4386654_4387356_+\|NADH-quinone-oxidoreductase-subunit-J	gnl\|CDD\|376343	pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone oxidoreductase chain 6.	8.68514e-38
CP029043.1\|AWE51824.1\|4387732_4389727_+\|NADH-quinone-oxidoreductase-subunit-L	gnl\|CDD\|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	3.19028e-154
CP029043.1\|AWE51834.1\|4399452_4399641_-\|excisionase	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	6.62913e-09
CP029043.1\|AWE51823.1\|4387355_4387736_+\|NADH-quinone-oxidoreductase-subunit-NuoK	gnl\|CDD\|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	1.36642e-34
CP029043.1\|AWE51827.1\|4393068_4393929_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235102	PRK03072, PRK03072, heat shock protein HtpX; Provisional.	0
CP029043.1\|AWE51832.1\|4397051_4397540_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|213038	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ. In Pseudomonas syringae, YajQ functions as a host protein involved in the temporal control of bacteriophage Phi6 gene transcription. It has been shown to bind to the phage's major structural core protein P1, most likely activating transcription by acting indirectly on the RNA polymerase. YajQ may remain bound to the phage particles throughout the infection period. Earlier, YajQ was characterized as a putative nucleic acid-binding protein based on the similarity of its (ferredoxin-like) three-dimensional topology with that of RNP-like RNA-binding domains.	4.12395e-84

>CP029043.1|AWE51828.1|4393925_4394321_+|YccF-domain-containing-protein
MKTILNVIWLVLSGFWLFLAYMVAGLVLCITIIGIPFGIAAFRIGVYALWPFGYTTVERHDAGAPSCVGNVLWLVLAGWWLAIGHIVTGLALCVTIIGIPFGIANFKLIPVSLFPLGREIVPTDRPFAATW
>CP029043.1|AWE51827.1|4393068_4393929_+|zinc-metalloprotease-HtpX
MHRRHNGLRTAVLLGGLSALIIVIGSFFGRTGLVIAVVVALGTNAYAYWNSDKLALRAMRARPVSEFEAPGLYRMVRELSTQARQPMPRLYISPTEAPNAFATGRNPRNAAVCCTEGILRLLDERELRGVIGHELSHVYNRDILISSVAGALASVIMFLVNFAWLIPIGRSDDDDGPGILGLLLIMILGPLAASLIQLAISRSREYEADASGAQLTGDPLALASALRKLEMGTKQLPLPPEPRIETASHMMIANPFRPGQGFAKMFSTHPPMAERIARLEKMAGHQ
>CP029043.1|AWE51826.1|4391304_4392828_+|NADH-quinone-oxidoreductase-subunit-N
MSSPAHTLAESLVQSVDWLAIAPPTVVAAVALAVLVADLFVPETRKALLGWASVAGLAVSALLLLPLLDGDRSTFCLTGAPDVCSYTADRFTLVIQFLVLGGALLAALLSVTALKDARKDLAEGEYWFLLLSSAAGAALLPAARDLATLVVALEVASLPAFALVGLRRGDRRSSEAALKFFLSSVTATAVSLMGISFVYAATGTLHLTRLAERIQDVDGQLQTLTQTGVVLTLVGFAFKTAAVPFHFWVPDTYIGAPLPVAAYLSVVGKAVGFTGLILVTVVALPSYADVWGPALAALAALTMTVGNVGALRQQATRAYSAVRLLAWSSVGQAGYLLVPIAAAAYSGDAERSIGSTVAYALMYGAVNLGAFAVAALVGRTKTLNRVSDYRGLYARNPVSALVLAFFLLCLAGLPPGIIGLFAKVTVFSAAVDAGLGWLAVVMAVNVVIALFYYLQWTALLFRAPEGEPVRHLPPAPVTAAIALTGVIAVALSGAPQLVLRFADTGLF
>CP029043.1|AWE51825.1|4389733_4391308_+|NADH-quinone-oxidoreductase-subunit-M
MIDINESVMQFLLAFVVVGPLLGAAAALLPAPPGLKGKSPDQAVLRHGVTVTGAVLIAAIVLALGFDHDQPSKMQAGTDISWIPALDVRIHLGVDGISLPLLVLTALLTFLCALYSYFKMPSGPTPKAFVALLLLLEGGTLATFAVLDLLLFFLAFETVLIPMYFLIARWGGDGRAAAAWKFILYTLLGSVVMLLGLLLIGLEAGTFDMVALATDNGRSLTASVQVIAVLAIGLGLAVKTPMWPLHSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRILLPIAPDGFADFAPYLAAFAVVGIIYGSLACLALAKQGAKGDLKRLIAYSSVGHMGFVLLGIATMTPTGVNGALFANIAHGLITGLLFFLVGALKDRTGTTDLDTLAEETGAALYGKAPRLGGLLAFAAVASLGLPGLAGFWGEMLALFGAFDPAAGLSRPAFLTFMAIGAFGTLLTAAYLLVVVRRVCMGAVPQEAPRLADVHGYEFAAWTPLVALTVVAGLWPKTLLGLTDPAVQQLLAGGTR
>CP029043.1|AWE51824.1|4387732_4389727_+|NADH-quinone-oxidoreductase-subunit-L
MTTTTLAVLVPLLPFLGAAAGLLLGRTAPGFVRPLAVLPTLASVVLAAVVAVRQGGNRVIDAATELTPTGSVPIELALYIDGFAALVAVLVGVVATCVQIYSTGYLREDPRYPSYAALVSLFTSAMLLVVYSGDLMVLLVGWEIMGICSYFLVGHYWETPEARAASLKAFLVTKLGDVPFLIGLFALATDAGSFRITEILGTVADGGLDHPTLVALLLLAGVAGKSAQFPLHTWLPDAMAGPTPVSALIHAATMVAAGVYFVARLLPVFEASQAAMVVLAVMAAVTMVGSGLAALAQDDIKRVLAYSTIGQLGYMTGALAVADRGAAVFHLLSHGAFKALLFLAAGVIIHAAGTNSLAVMSRMSGLPDRVPDAFWTMTVALLALAAIPPFSGFFSKESVLGAAEHVATGHTEHAPGAAGWTVLIAGVITALLTAAYATRLWLLTFRGHGVAAPDHGRQPATMTVVLWVLAVPSLAVGAFAYRVLPDWFDGNDLAPTLTTSVLGTGVALIGGIVTYAAWRHTTSLAADVPIGAVVAHPEGDAGQVEAEAIASHAPVYGGVAYAPDPADPGRLLLGPLHRHAAVGFHLDAVYQALFVLPVRGGAALVRFLDREVVDTYVRGAGALPRWLGVAVRRAQTGNVQTYVSALLAGTVVLAVAAVLVATGA
>CP029043.1|AWE51823.1|4387355_4387736_+|NADH-quinone-oxidoreductase-subunit-NuoK
MHLAYPAVLSALLFCTGLYGVLARRNAILVLMSVELMLNAVNLNLVAFDVWLSRAAEDTLHSGQALTLFTITIAAAEIGIGLAIVLAVHRNRGTSDIDRLRDTAEGRDPDHDSPAAGQAEKAEATA
>CP029043.1|AWE54708.1|4386654_4387356_+|NADH-quinone-oxidoreductase-subunit-J
MTTNALTTHAAPSNGTHGFLSPTGVEITFLLVGLVTFGAALVTVTTRQLVHAALWLVVALGGLAVEYLLLTAEFIAWVQVLIYVGSVVVLLLFGLMLTRAPIGRSPDADSGNRWAALAVAVVSAVTLVWVVVDAFRTTWIDLDGPAAGSTKATGESLFQNWVLPFEGLSVLLLAALVGAIVLSRKEKDEPGSPPVNSRAATGSSPSVPDSRNHPIGRNGASEGTQSADQEGAR
>CP029043.1|AWE51822.1|4386058_4386622_+|NADH-quinone-oxidoreductase-subunit-I
MAPVPGSGLAKGLAVTLRTMTRKSVTAQYPDTQPALPPRSRGVIGLFEENCTVCMLCARECPDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEFEYAETDIRDLTHERDKLREWMWTVPAPPALDPGAEEPKEIAAARKTAEKLTAAQAESRQDAQEGES
>CP029043.1|AWE51821.1|4385087_4386056_+|NADH-quinone-oxidoreductase-subunit-H
MNDALDVTLRLLIVFVVFLTFPLLVGQTEHKVMAHMQGRLGPMYAGGFHGWAQLVADGVKFAQKEDVVPAGADRRIFQLAPAVALLPYLLVLLAIPIGPGEGAVGEVVDAGIFFVLAVMGVGVLGSLMAGWASANKFSLLGGLRTAAQLLAYELPMLLTAASVAMAAGTVSLVGILDAFEWWWLPWQIVGAIVFFVAGLAELQRPPFDMPVADSEIIFGAYTEYTGRRFALFLLAEYAGIVVLCGLTTVLFLGGWHGPAGADGLGWVWTLLKTAVLAFIVIWLRVTYPRLREDQLQKLSWTLLVPLSLAQIALTGIVKVVIQ
>CP029043.1|AWE51820.1|4383023_4383680_+|NADH-quinone-oxidoreductase-subunit-B
MDVTPDTNEQPVLLPEPKRLGALARLAPEPMKVILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAQESLADRYATSRPSTAALQSGLVRGPQTPGTRAADGDAGTDAGPDAREARR
>CP029043.1|AWE51830.1|4395213_4396479_-|amino-acid-permease
MTRSPSASPGLRRSLGVGDAVVIGLGSMIGAGIFAALGPAARAAGSGLLLGLAVAAVVAYCNAMSSARLAARYPASGGTYVYGRERLGEFWGYLAGWAFVVGKTASCAAMALTVGAYVWPGQAHAVAVAAVVALTAVNYGGIQKSAWLTRAIVVVVLAVLAGVVVACLSSGRSDPGHLWTGASGGVGGVLQAAGLLFFAFAGYARIATLGEEVRDPSRTIPRAIPLALGVTLVVYAWVAVAVLSVLGAEGLGAAAAPLTDAVRAAGVPGLVPVVRVGAAVAALGSLLALILGVSRTTLAMARDRHLPGALAAVHPRFQVPHRAELAVGAVVAVLAATVDVRGAIGFSSFGVLAYYAVANASAWTLDRARRARVVPVVGLVGCAVLAFSLPVVSVVVGAGVLAVGGALYGVRWWVGRRSSRA
>CP029043.1|AWE51831.1|4396627_4396894_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MTIISWIFLGLLAGAIAKFLLPGRDPGGFIGTTLIGIAGAFIGGWISARWLDHPISKDFYDGATWVSAIGGSLVLLVAYRIFFGHSRD
>CP029043.1|AWE51832.1|4397051_4397540_-|YajQ-family-cyclic-di-GMP-binding-protein
MADSSFDIVSKVERQEVDNALNQTAKEISQRYDFKGVGASISWSGEKILMEANSEDRVKAVLDVFQSKLIKRGISLKALDAGEPQLSGKEYKIFASIEEGISQENAKKVAKIIRDEGPKGVKAQVQGDELRVSSKSRDDLQAVIALLKGKDFDFALQFVNYR
>CP029043.1|AWE51833.1|4398022_4399393_-|site-specific-integrase
MPFTYDVRVYSIETRRDRPKPYRVRWLVGPQKHSKSYTVKAQADGRRSELMTALRKGEQFDVESGLPASELRALNGSVTWYEHTRAYVDGRWDRLPAKSRRNDADALATITPVLVKTTAGRPAPRVLRRALYGWAYNKSRWGQEPPAEVADALRWVEKNSVAISALEDPATLRTALDALSTLLNGSPAAGRTARRKRACLSDVLGLAVERRYFTIPVNPLTTVKWTAPKSTEEVDPASVANPRQVRELLEAVRAQGERGAHLEAFFGCLYYAAMRPAEAVGLKASQCHLPKRGWGHLTLRGGIVHAGHNWTDDDRAHQERHLKARAVRDSRVVPIPPHFVAMLRWHIERYGAAPDGRLFRTSRGGVIQDTGYGEVWAEARSAALSPFEVASPLARRPYDLRCAGVSLWLFSGVDPMEVARRAGHSVAVLLRVYAKVLAQAQDRANRQIEAGLREWH
>CP029043.1|AWE51834.1|4399452_4399641_-|excisionase
MARPQMLKLPEVLEEIGMSRTAFYRMRARGQAPKLRKLPNGQVRVSRADLDAWWESCTEHAA
>CP029043.1|AWE51835.1|4400094_4401570_-|ATP-binding-protein
MEDDDKNPARKVIADYAKERFRYFRTADGTVYAQRKGHPVARPIRSQGTTGSHRQELMVGLFKDGLGTFNGTAMKEALDLIEALALTEQVQPVHIRVAPGLDGATWLDLGRNDGQSVRIHPTGWDIRTPDPAEVCWRRTQLTGELPLPAKDTNGKGIDALFRLCNFANAETECLAMAWLIGCLEPSVPVPAPFLTGPQGAGKSTGGRMLIRLIEGMTGDLRRAPKDEDNLIAAVAAGWVTALDNLSHMSPDLSDAMCCIVTGAESVKRALFTDGDVFRARYRRPLLLTGIDVGVIRPDLAERLLPLRLERPKVRRTEAELWAEYAEALPVMLGSLLDLTVKVRAATAETPTDLRMADFAHLCAQLDAAMGLGALAAYRAGLDDLNDDVIEGDLLAQTVLQYAAGMEPGAQEKMSSAEWLHLLTRLYSGEECRPLPKGWPTTGKVLSDRLKRLQPTLAARGLLVDWGRTKTARYIELTEPAPAPQPQQETAF
>CP029043.1|AWE51836.1|4401572_4402400_-|DNA-primase
MSSHLRTALRLAAEGLPVLPLRKGKVPFANCPGCLYTSCGGRPHMKTPGPCTCPAPCHGWAAATTDTSVIASLAWASAWQGAAAIAYHPGGAGLTVVDCDNADAIAWARKTLPATRTVPTTRGEHWLYLGTMPSANGVRPGVDIKSTMSYARWLGPGTGTMTKLPDVVCVLTAAKPATPVAVRVPTPAGGGECRHRTPAYLERGIAMAEQRITEARCAIHATVYRTFLAVLSTHGRCGCLTEDHIARLFTAAQAKGETPRHCTDAWTNARTTLGL
>CP029043.1|AWE51837.1|4402396_4403140_-|DNA-methylase
MTQPTDIRRVHAALAPPEPFRVLDGCCCIGGATEGLRRAFGPNVHITGIDIEPQPDYPGDVFHRGDVVEFIRDCGREFDFIHVSPPCQGEGAPTKGTNAARNAAIGRTYPRLIRPVRAALEATGRPYVMENVAGSEVRKDIRLCGEQFGLAVLMHRYFELGGWAATQPAHPKHRGYVRGWRHGEYREGPYVAAYGKGGGKATVEEIRAAKGIDWSTDHLRLREALPPAYMEWIGRAFLASGTLGVAA
>CP029043.1|AWE51838.1|4403229_4403535_-|hypothetical-protein
MDHRTPPGDIAPHIPADTYHRAQATGQPVVIVLNDTHPTGIPWHRVLIPFAIAGAVVAGGWGLVACLCLLLDAAAHTATVIAGAAGPIGIGGITLKVFSKK
>CP029043.1|AWE51839.1|4403777_4404029_+|hypothetical-protein
MTDDASGPLDLDSHIDVSLWAPDVVVLFHWLMELDFDQLPVNHKAEKQALNDLLAQLDEWALGTTERDLERAREIVARNMGWE

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Crispr_ID: CP029043_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029043_7

4507192-4507268

Orphan

Consensus_repeat	Method
GACCTGTGCCGTCCGCCTGAAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029043_7

>merge|CP029043|7|4507192-4507268|CRISPRCasFinder
GACCTGTGCCGTCCGCCTGAAGCGTCCGGGGCGGGGCCGGCCGTCCAGCCGTCGACCTGTGCCGTCCGCCTGAAGCG

>CP029043|7|6|4507192-4507268|CRISPRCasFinder
GACCTGTGCCGTCCGCCTGAAGCG	TCCGGGGCGGGGCCGGCCGTCCAGCCGTC
GACCTGTGCCGTCCGCCTGAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029043.1\|AWE51927.1\|4500793_4501177_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029043.1\|AWE54721.1\|4508960_4509458_+\|ribosomal-protein-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
CP029043.1\|AWE54722.1\|4514071_4515298_+\|RNA-polymerase-subunit-sigma-24	unknown	unknown	gnl\|CDD\|227277
CP029043.1\|AWE51937.1\|4510973_4512032_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380519
CP029043.1\|AWE51936.1\|4510547_4510826_+\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE51924.1\|4496784_4497723_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129372
CP029043.1\|AWE51928.1\|4501203_4502640_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
CP029043.1\|AWE51938.1\|4512145_4513198_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|273029
CP029043.1\|AWE51925.1\|4497739_4498729_-\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466
CP029043.1\|AWE51939.1\|4513307_4513664_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|226318
CP029043.1\|AWE51930.1\|4505435_4506680_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029043.1\|AWE54720.1\|4503178_4504027_+\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
CP029043.1\|AWE51926.1\|4498894_4500742_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
CP029043.1\|AWE51929.1\|4504088_4505255_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
CP029043.1\|AWE51934.1\|4508253_4508910_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
CP029043.1\|AWE51931.1\|4506645_4507158_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|376771
CP029043.1\|AWE54719.1\|4502682_4503054_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
CP029043.1\|AWE51932.1\|4507398_4507581_+\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE51933.1\|4507590_4508151_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE51935.1\|4509450_4510551_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585

Protein	Function_ID	Function_description	E-value
CP029043.1\|AWE51927.1\|4500793_4501177_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.45314e-12
CP029043.1\|AWE54721.1\|4508960_4509458_+\|ribosomal-protein-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	4.6961e-31
CP029043.1\|AWE54722.1\|4514071_4515298_+\|RNA-polymerase-subunit-sigma-24	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	1.01137e-143
CP029043.1\|AWE51937.1\|4510973_4512032_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380519	cd06296, PBP1_CatR-like, ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	6.88778e-114
CP029043.1\|AWE51924.1\|4496784_4497723_-\|hypothetical-protein	gnl\|CDD\|129372	TIGR00271, Uncharacterized_protein_MJ0678, uncharacterized hydrophobic domain. This domain is in a family of archaeal proteins that includes AF0785 of Archaeoglobus fulgidus and in several eubacterial proteins, including the much longer protein sll1151 from Synechocystis PCC6803.	2.17619e-57
CP029043.1\|AWE51928.1\|4501203_4502640_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	5.93306e-63
CP029043.1\|AWE51938.1\|4512145_4513198_+\|transcriptional-regulator	gnl\|CDD\|273029	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain. This model describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is proteins psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. Besides the region of strong similarily represented by this model, these proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor. [Regulatory functions, Other].	2.95904e-67
CP029043.1\|AWE51925.1\|4497739_4498729_-\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0
CP029043.1\|AWE51930.1\|4505435_4506680_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.95493e-24
CP029043.1\|AWE54720.1\|4503178_4504027_+\|L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	2.77819e-21
CP029043.1\|AWE51926.1\|4498894_4500742_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029043.1\|AWE51929.1\|4504088_4505255_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	3.26499e-159
CP029043.1\|AWE51934.1\|4508253_4508910_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	5.88024e-64
CP029043.1\|AWE51931.1\|4506645_4507158_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	5.3636e-47
CP029043.1\|AWE54719.1\|4502682_4503054_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	2.43706e-46
CP029043.1\|AWE51939.1\|4513307_4513664_+\|transcriptional-regulator	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	1.09201e-20
CP029043.1\|AWE51935.1\|4509450_4510551_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0

>CP029043.1|AWE51931.1|4506645_4507158_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MEAPAAPHDAGDLQLTVTSPEQMRELGRRLAKLLRAGDLLMLSGELGAGKTTLTRGLGEGLGVRGAVTSPTFVIARVHPSLGDGPPLVHVDAYRLSGGLDEMEDLDLDVSLPESVVVVEWGEGKVEELTEERLQVVIHRAVGDTTDEVRQVTVTGLGERWGAVDLSVLAA
>CP029043.1|AWE51930.1|4505435_4506680_+|alpha/beta-hydrolase
MSESSAEAAVAAVASASEAAAGWRRATGLAGAAIGVIAAGAAAGVAIERMTVGRGMRQKARLALDSAGPYGSLRGTPGKAYADDGTELYYEVDDVDPESAPALSPRRRRLFGRKAPAPVTVVFSHGYCLNQDSWHFQRAALRGVVRTVHWDQRSHGRSARGVAQTQEGRHVDIEQLGRDLKAVIDAAAPEGPLVLVGHSMGGMTVMALADEYPELIRERVVATALVGTSSGRLGEVNFGLPVAGVNAVRRVLPGVLKALGQRAELVEKGRRATADLFAGIIKRYSFSSRDVDPAIARFAERMIEGTPIDVVAEFYPAFADHDKTEALPLFTDMPVLVLAGVGDLVTPSEHSEAIADLLPEAELVLVPDAGHLVMLEHPEVVTDRLADLLTRAGAVPAGATVSGYGSTSSTARRG
>CP029043.1|AWE51929.1|4504088_4505255_+|alanine-racemase
MRETAPQRTAPARARAEIDLAALRANVRTLRGRAPGAALMAVVKADAYGHGALPCARAALEAGATWLGTATPQEALALRAAGIQGVRIMCWLWTPGGPWQEAIEADLDVSVSGMWALREVTEAARRVGTPARVQLKADTGLGRGGCQPGDDWAELVREALRAEADGLIRITGLWSHFACADEPGHPSIAAQLDSFREMTAYAEERGARPEVRHIANSPATLTLPESHFDLVRTGIALYGVSPSPELGSPADLGLRPVMTLSASLALVKQVPGGHGVSYGHHYVTPGETTLGLVPLGYADGIPRHASGAGPVLVGGKWRTVAGRVAMDQFVVDLGGDEPEAGARAVLFGPGDGGEPTAEDWAQAAGTIGYEIVTRIGSRVPRVYVDGTR
>CP029043.1|AWE54720.1|4503178_4504027_+|L,D-transpeptidase
MLAAASLLPVGSASADPEPPAGGPGAELVPGVPLDLLQPAPADTADQALPPKVYEPSAEEDAVEPKDAPDATRDLVEYVTPMDALGGVKCSDEDGPHQREVERWLGRKADGEQSAADCRAIRRFQVKHRIKPAIGFAGPVTWATMRLESARKNPNAAGKCPVRAYRVACVDLDRQIAWVQTGRKVVFQPVSVRSGRKGYGTRAGWHRVYWRHKNHVSTLYNSPMPYAQFFDGGQAFHGVYGSIFTEVGSMGCVNMRLDDARALWKLLRKGDRVYVWGHRTEG
>CP029043.1|AWE54719.1|4502682_4503054_-|holo-ACP-synthase
MSIIGVGIDVAEIDRFDAALRRTPGLAERLFLESELLLSGGERRGVASLAARFAAKEALAKALGAPAGLLWTDAEVYVEDSGRPRLRVRGTVAARAAELGVRSWHVSLSHDAGVASAVVIAEG
>CP029043.1|AWE51928.1|4501203_4502640_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MRTAYGVETVRAAERELMARLPEGALMQRAAAGLAAACADLLGRVYGSRVVLLVGSGDNGGDALYAGARLARRGAGVTAVLLSPERAHPGGLAALRKAGGRSVGADAGAELVERADLVVDGIVGIGGKGGLRPEAAALAHAAERARVPVVAVDLPSGVDADTGEVHGTATRADLTVTFGTHKPGLLIDPAREHAGVVRLVDIGLTLPHDAVELEALQHADVARLLPVPAAESDKYRRGVVGIAAGSARYPGAAVLAVSGALRGGAGAVRYVGPAADAVIARFPETLVSDRGPAKAGRVQAWVVGPGAGDDAATVAEVLAADVPVLIDADGLRLADREAVRARTAPTLMTPHAGEAAALLGVTREEVEAARLTSVRELAARYEATVLLKGSTTLVAGAGGTGPVRVNPTGTSWLATAGSGDVLSGLAGSLLAAGLAPLDAASAGAYLHGLSGRFAADGAPVGAHDVAEGIPEAWRDVVG
>CP029043.1|AWE51927.1|4500793_4501177_+|GNAT-family-N-acetyltransferase
MTITYAWRGDFEDAAVDALHGEAFGHAPTGTEWGARVRRHSLGWVCARRDGRLVGFVNVVWDGGAHAFLLDTMVASDRRGRGVGTELVAVAAEEARSAGCHWLHVDFEEGLRPFYLEACGFRATDAG
>CP029043.1|AWE51926.1|4498894_4500742_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYVGSQPALDIVMAGLKRLEYRGYDSAGVAVLADGGLAAGKKAGKLVNLEKELTERPLPTGTTGIGHTRWATHGGPTDANAHPHLDNAGRVAVVHNGIIENFAALRAELTERGHDLASETDTEVVAHLLAEEFSVTADLAEAMRLVCRRLEGAFTLVAVHADEPDVVVGARRNSPLVVGVGEGEAFLASDVAAFIAHTRSAIELGQDQVVELRRDGVRVTGFDGQPADVRSYRVDWDAAAAEKGGYDYFMLKEIAEQPKAVADTLLGRIDAAGSLRLDEVRIGASELREVDKVVIVACGTAFHAGLIAKYAIEHWTRIPCEVELASEFRYRDPIMDQQTLVVAISQSGETMDTLMALRHAREQGARVLAICNTNGSTIPRESDAVLYTHAGPEVAVASTKAFLTQLVACYLVALYLGQVRGTKWGDEIRAVIRDLSQIAGAVDRVLETMEPVRELARSLAAKNTVLFLGRHVGYPVALEGALKLKELAYMHAEGFAAGELKHGPIALIEDDLPVVVVVPSPRGRSVLHDKIVSNIQEIRARGARTIVIAEEGDEAVVPYADHLIRIPATPTLLQPLVATVPLQVFACELATARGNEVDQPRNLAKSVTVE
>CP029043.1|AWE51925.1|4497739_4498729_-|type-I-pantothenate-kinase
MISPVSSMPRSAHRQRPEATPYVDLTRSEWSALRDKTPLPLTAEEVEKLRGLGDVIDLDEVRDIYLPLSRLLNLYVGATDGLRGALNTFLGEQGSQSGTPFVIGVAGSVAVGKSTVARLLQALLSRWPEHPRVELVTTDGFLLPTEELQARGLMSRKGFPESYDRRALTRFVADIKAGKDEVTAPVYSHLIYDIVPDKRLTVRRPDILIVEGLNVLQPALPGKDGRTRVGLADYFDFSVYVDARTEDIERWYLHRFKRLRETAFQDPSSYFRKYTQVSEEEALDYARTMWRTINKPNLVENIAPTRGRATLVVRKGADHKVQRLSLRKL
>CP029043.1|AWE51924.1|4496784_4497723_-|hypothetical-protein
MLHLRLISPPERTEDVVGLIERTVGTAHLVVLPGAARDPAGDLVLCDVARESGDALLTGLQRLGLEDDGSIAVENIDLSLSRRAEQAEKDAPGEPADAVLWDHLTEATHEESTLSATYLAFITLATMIAACGVVLDNAVLIVGAMAVGPEFGPLAGISTATVRRQPRLALRSVVALIAGFAVAMAVTVGFSWFMDALGLFSERQLEADRPNTAFVYAPDWFSFIVAVLAGTAGTLSLTSAKSGALVGVAISVTTVPAAANAAVALSYGDTWQTWRSSEQLLLNLLGIVLAGTLTLVLQKWLWSRQPRKVNAV
>CP029043.1|AWE51932.1|4507398_4507581_+|hypothetical-protein
MPASENTPHGEARPRPYPPADGVSLSVRDLLAANAAARLVSTPPPAPESRPVAEPRPEAA
>CP029043.1|AWE51933.1|4507590_4508151_-|hypothetical-protein
MVTVAGSSSGFVVGLTAAALAAVGFLTFQAAANVPPDLGERTGGTLGVSTSKAPRDSDDPEALPAGSGIGERVVYSLDDDRVWLVGNGDKVKRTFRVSPGSVDPAPGAYTVGSRSSSITGTDGLPVEHVVRFASVDGVTIGFSAAVPGGTPQPDPVARTGGIRESRSDGTAMWKFATIGRTVVVIP
>CP029043.1|AWE51934.1|4508253_4508910_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MLLLALDTATPAVTVALHDGTDVIASSSQVDARRHGELLLPAVDRVLAEAGVKLDAVTGVVVGVGPGPYTGLRVGLMTADTFGLVLGVPVHGVCTLDGLAYAAHIEKGPFVVATDARRKEVYWARYADSRTRLTEPAVDRPADIAAEVAGLPAVGAGALLYPDTFPQVHEPEHVSAAALAALAAERLAAGEELPAPRPLYLRRPDAQVPKNYKVVTPK
>CP029043.1|AWE54721.1|4508960_4509458_+|ribosomal-protein-alanine-N-acetyltransferase
MRWWDIDFVLALEKELFPEDAWSRGMFWSELAHSRGAEATRRYVVAEEDGRLVGYAGLASAGDLADVQTIAVARDHWGTGLGGRLLAELLRAATEFECAEVMLECRVDNVRAQRLYERFGFEAIGFRRGYYQPGNVDALVMRLTTAPDSGSASGDDSVQGTEING
>CP029043.1|AWE51935.1|4509450_4510551_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MADSRDEPLVLGIETSCDETGVGIVRGTTLLADAVASSVDEHARFGGVVPEVASRAHLEAMVPTIDRALKEAGVSARDLDGVAVTAGPGLAGALLVGVSAAKAYAYALGKPLYGVNHLASHICVDQLEHGPLPEPTMALLVSGGHSSLLLSSDITSDVRPMGATIDDAAGEAFDKIARVLNLGFPGGPVIDRYAREGDPEAIAFPRGLTGPRDPAYDFSFSGLKTAVARWIEAKRAVGEEVPVRDVAASFQEAVVDVLTRKAVRACKDEGVDHLMIGGGVAANSRLRALAQERCEAAGIRLRVPRPKLCTDNGAMVAALGAEMVARNRAASDWDLSADSSLPVTDPHVPGTGHDHVHEVSKENLYS
>CP029043.1|AWE51936.1|4510547_4510826_+|hypothetical-protein
MTVALMWEARAVPGRGEELLAWARVQELPRPPLRRETFRAPQDRVLVVTWWDADADAEVPELPEPDAGLVVRAVHRWRFESLGTEGSGRSDG
>CP029043.1|AWE51937.1|4510973_4512032_+|LacI-family-transcriptional-regulator
MPETRSAPSTAPTAGRSGRTATLAEIAREAGVSAPTVSKVLNGRADVAPGTRTRVEELLRAHGYRRRRAETGRSPLIDLVFHELESAWAMEVIRGVENVARDAGLSVVLSESAGRLTPGRTWADQVAARRPHGVILVLSDLDESQRALLTSRSIPFVVMDPAGDPGADVPSIGATNWQGGLAATRHLIELGHRRIGAITGPSRMMCSRARLDGYRAALETAGMAVDQSMVRTGDFHHETGYRQGLELLRRPDRPTAVFAGNDLQALGLYEAARELGLRVPEDLSVVGFDDLPVARWVGPPLTTVRQPLTEMAEAAAKLVLDLAREQTAPTATRIDLATSLVVRSSTAPPPEL
>CP029043.1|AWE51938.1|4512145_4513198_+|transcriptional-regulator
MRGRGRAASGDDDGGRGGRRASVWRRAGIALAALLALAIGVAAWAYRHLDDNITGVDIDQALGDDRPPRAMTTPTPSASPLPTEALNILVLGSDSRSGADNKKLGGGDSGGARSDTAMVFHIDAGRTAATVVSVPRDTLVDRPSCPLPSGGSTRPAYQAMFNSAYALGGPVCAVKTVESLTGVRMDHYVELDFSGFAKLVDALGGVTVTTDEDIHDEDSHLDLAAGTHHLDGKQALALARTRHGIGNGSDLGRIELQQKLVKALLDQISATDLLTDPAKLYRVADAVTGALTTDTGLDSLSELTGLGQSLRGLTSDTVRTVTMPVVPAPSNHNRVVADEPEAGELWKSLR
>CP029043.1|AWE51939.1|4513307_4513664_+|transcriptional-regulator
MPRYLSLVKIDEASAPAEGPSPELMRRMGELIEEVTKAGVMLDTAGLLPSAQGTRVHWEGGRISVTDGPFTEAKEVVGGYALMQCKDKAEAIEWTTRFLKVHEEFWTVTCEVREIAEG
>CP029043.1|AWE54722.1|4514071_4515298_+|RNA-polymerase-subunit-sigma-24
METVFRLEFARVVAAVTRIVRDVGIAEELAQDALVAALEQWPRDGVPDRPGAWLTAAARHRAVDLVRRRENYARKLREIGRDLEDVPPPPEPADPDAIDDDLLRLVFTTCHPVLSPEARTALTLRLVGGLTTAEIARAHLVPEATVAQRVVRAKRTLARRNVPFEVPYGPDREARLGSVLDVIYLIFNEGYAASAGDDWLRPALCEDALRLARQLAALMPKEPEVHGLASLLEFQASRTAARTAPDGTPVLLRDQDRRRWNRMLVARGVDALDLASATATGAPGPYALQAAIAACHAHAYTYEETDWRTISTLYRLLAAQSPSPVVELNRAVAVSMAEGPGPALEIVDSLADEPALRDYHLLPSVRGDLLLRLGRTAQARAAFERAAALTRNEQERELLLRRAADATP

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Crispr_ID: CP029043_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029043_8

4898830-4898949

Orphan

Consensus_repeat	Method
CCGGCACTCCCCCAAGCTCTTCGAGCAGGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029043_8

>merge|CP029043|8|4898830-4898949|CRISPRCasFinder
CCGGCACTCCCCCAAGCTCTTCGAGCAGGGGGACCCCCACTCGCCGCACCGGCCGGCCACCCGCGTACAACCAGTACGCGGGAGCCCGTCCGGCACTCCCCCAGCTCTTCGAGCAGGGGG

>CP029043|8|7|4898830-4898949|CRISPRCasFinder
CCGGCACTCCCCCAAGCTCTTCGAGCAGGGGG	ACCCCCACTCGCCGCACCGGCCGGCCACCCGCGTACAACCAGTACGCGGGAGCCCG
TCCGGCACTCCCCCAGCTCTTCGAGCAGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029043.1\|AWE52258.1\|4904915_4905521_+\|antibiotic-resistance-protein-MarC	unknown	unknown	gnl\|CDD\|225006
CP029043.1\|AWE52250.1\|4896505_4897801_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
CP029043.1\|AWE52253.1\|4899563_4900679_-\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
CP029043.1\|AWE52251.1\|4898033_4898783_+\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE52252.1\|4899021_4899531_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE52249.1\|4895919_4896516_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377629
CP029043.1\|AWE52244.1\|4888965_4889664_+\|RNA-polymerase-sigma-factor-SigE	unknown	unknown	gnl\|CDD\|236606
CP029043.1\|AWE52254.1\|4901182_4901767_+\|Suppressor-of-fused-domain-protein	unknown	unknown	gnl\|CDD\|377450
CP029043.1\|AWE52261.1\|4906887_4907769_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029043.1\|AWE52247.1\|4893909_4894662_+\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE52248.1\|4894742_4895876_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|378455
CP029043.1\|AWE52259.1\|4905605_4905758_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE52260.1\|4905997_4906891_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224349
CP029043.1\|AWE52255.1\|4901797_4903024_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341027
CP029043.1\|AWE52245.1\|4889660_4890626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379219
CP029043.1\|AWE52246.1\|4893335_4893767_+\|Sec-independent-protein-translocase-TatB	unknown	unknown	gnl\|CDD\|179287
CP029043.1\|AWE52257.1\|4903944_4904802_+\|phosphatase	unknown	unknown	gnl\|CDD\|223686
CP029043.1\|AWE52243.1\|4888031_4888664_-\|methyltransferase	unknown	unknown	gnl\|CDD\|226607
CP029043.1\|AWE52242.1\|4887770_4887938_+\|DUF3117-domain-containing-protein	unknown	unknown	gnl\|CDD\|371461
CP029043.1\|AWE52256.1\|4903189_4903831_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029043.1\|AWE52258.1\|4904915_4905521_+\|antibiotic-resistance-protein-MarC	gnl\|CDD\|225006	COG2095, MarC, Multiple antibiotic transporter [Intracellular trafficking and secretion].	2.58755e-41
CP029043.1\|AWE52250.1\|4896505_4897801_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	9.98342e-43
CP029043.1\|AWE52253.1\|4899563_4900679_-\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.75456e-168
CP029043.1\|AWE52249.1\|4895919_4896516_-\|hypothetical-protein	gnl\|CDD\|377629	pfam06210, DUF1003, Protein of unknown function (DUF1003). This family consists of several hypothetical bacterial proteins of unknown function.	4.95014e-48
CP029043.1\|AWE52244.1\|4888965_4889664_+\|RNA-polymerase-sigma-factor-SigE	gnl\|CDD\|236606	PRK09647, PRK09647, RNA polymerase sigma factor SigE; Reviewed.	9.64242e-128
CP029043.1\|AWE52254.1\|4901182_4901767_+\|Suppressor-of-fused-domain-protein	gnl\|CDD\|377450	pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU, encoding the human orthologue of Drosophila suppressor of fused, appears to have a conserved role in the repression of Hedgehog signaling. SUFU exerts its repressor role by physically interacting with GLI proteins in both the cytoplasm and the nucleus. SUFU has been found to be a tumor-suppressor gene that predisposes individuals to medulloblastoma by modulating the SHH signaling pathway. Genomic contextual analysis of bacterial SUFU versions revealed that they are immunity proteins against diverse nuclease toxins in polymorphic toxin systems.	1.4039e-31
CP029043.1\|AWE52261.1\|4906887_4907769_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.5392e-14
CP029043.1\|AWE52248.1\|4894742_4895876_-\|sodium:proton-antiporter	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	6.469e-132
CP029043.1\|AWE52260.1\|4905997_4906891_+\|NYN-domain-containing-protein	gnl\|CDD\|224349	COG1432, COG1432, Uncharacterized conserved protein [Function unknown].	4.98938e-06
CP029043.1\|AWE52242.1\|4887770_4887938_+\|DUF3117-domain-containing-protein	gnl\|CDD\|371461	pfam11314, DUF3117, Protein of unknown function (DUF3117). This family of proteins with unknown function appears to be restricted to Actinobacteria.	3.05791e-23
CP029043.1\|AWE52245.1\|4889660_4890626_+\|hypothetical-protein	gnl\|CDD\|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	1.34661e-09
CP029043.1\|AWE52246.1\|4893335_4893767_+\|Sec-independent-protein-translocase-TatB	gnl\|CDD\|179287	PRK01371, PRK01371, Sec-independent protein translocase protein TatB.	5.31747e-55
CP029043.1\|AWE52257.1\|4903944_4904802_+\|phosphatase	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	3.05939e-48
CP029043.1\|AWE52243.1\|4888031_4888664_-\|methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	7.64923e-50
CP029043.1\|AWE52255.1\|4901797_4903024_-\|MFS-transporter	gnl\|CDD\|341027	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis multidrug efflux protein YfmO, bacillibactin exporter YmfD/YmfE, uncharacterized MFS-type transporter YvmA, and similar proteins. YfmO acts to efflux copper or a copper complex, and could contribute to copper resistance. YmfD/YmfE is involved in secretion of bacillibactin. The YfmO-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.41115e-88

>CP029043.1|AWE52251.1|4898033_4898783_+|hypothetical-protein
MTAIPHGRSRKAALVSAMCALLVSAAGLTGCSSEDPDAGTNGVGKLPPAEIQRKTRAAADSAQAVHLSGNVVTSGRTYKLDMRLKADGATGSVTAQGSTFHLLRLGEQLFLKADAGFWSDAGTDGRTDAAAVDKLDGKYVKVPQGDPAYKKFSGFTEKDVLFDGLLALHGEVTTDGHHEQAGLKTIRLSGDGGDGGTLEVSLEGKPYPLLLTRAGGAGTLTFSAWGKDFPLQKPNKDDTVDYGRQLPSS
>CP029043.1|AWE52250.1|4896505_4897801_-|magnesium-transporter
MAAGAPRIFVSHLAGVAAFDPNGDQVGRVRDLVVMLRVGRRPPRLLGLVVELSTRRRIFLPMTRVTSIESGQVITTGVLNVRRFEQRPTERLVFGELLDRRVKLVETDEEVTVLDLSVQQLPARRDWEIDKVFVRKGGRGGAFRRAKGESLTVEWSAVTGFSLEEQGQGAENLLATFEQLRPADLANVLHHLSPKRRAEVAAALDDDRLADVLEELPEDDQIEILGKLKQERAADVLEAMDPDDAADLLGELPLDEQERLLNLMQPSDAADMRRLMAYEEHTAGGLMTTEPIILRPDATVADALARIRHPDLSPALAAQVYVCRPPDETPTGKYLGTVHFQRLLRDPPYTLVSSMVDEALEALEPDATLPVVAGFFATYDMVAAPVVDDSGSLLGAVTVDDVLDHMLPDDWRETEFHLEEDSGKGVGADGS
>CP029043.1|AWE52249.1|4895919_4896516_-|hypothetical-protein
MAPEREGGRERAAAGATAAGRGPRTRLDQPRPPRRRILPEWDPDAFGRLSERIARFIGTGRFLVWMTVVIILWVLWNIAAPSELRFDEYPFIFLTLALSLQASYAAPLILLAQNRQDDRDRVNLEQDRKQNERSIADTEYLTREVAALRVNLGEVATRDWMRSELQDLVKELDARRNGHHDRGVFPAERSPGRDVDDR
>CP029043.1|AWE52248.1|4894742_4895876_-|sodium:proton-antiporter
MATEDAVREALATVNDPEINRPITELGMVKSVEIGADGAVAVTVYLTVSGCPMRETITQRVTDAVAAVEGVTRVDVTLDVMSDEQRKELANALRGGQAEREVPFAKPGSLTRVYAVASGKGGVGKSSVTVNLAAAMAADGLKVGVVDADIYGHSVPRMLGADGRPTQVENMIMPPSANGVKVISIGMFTPGNAPVVWRGPMLHRALQQFLADVYWGDLDVLLLDLPPGTGDIAISVAQLVPNAEILVVTTPQQAAAEVAERAGSIAVQTHQKIVGVVENMSGLPCPHCGEMVDVFGTGGGQTVADGLTRTTGTNVPVLGSIPIDVRLREGGDEGRPVVLSDPDSPAGAALRSIAGKLGGRQRGLSGLSLGITPKNKF
>CP029043.1|AWE52247.1|4893909_4894662_+|hypothetical-protein
MRTVPRRDRRPKGGGPGWSGESEEASGHMETTSQTTSRAVAQETTEESGRQVPSARRTVDGYLLAPFPWYGLDEAFTGPRWLMQVGMAADGAVEHGSIGHGDEPSVLNEASEGREKFAVVVTVAANPSRRSADGTGLLEATSVSSAAWLAGVGLLSFTWPGQMDHSLRDDWLDQQTETAWALADDLDGPDWSTLSLPVDGVPTPFHYRESEFGWVLAGSTQEGVHVGAYGRGMSAYGLGFAMIKDIASYA
>CP029043.1|AWE52246.1|4893335_4893767_+|Sec-independent-protein-translocase-TatB
MFNDIGPLELVTLIVLAVLVFGPDKLPKVIQDVTRTIRKIREFSEGAKQDIRKELGPEFKDFEFEDLNPKTFIRKQLDNEELGLKEIRNGFDLKKEMAEVTDAVHGRETEPPTPAPSAGGRIDMTKKPETPRVERPPYDADAT
>CP029043.1|AWE52245.1|4889660_4890626_+|hypothetical-protein
MSGLRPDPIERLFAEQHLGDRLSALVDGELGHETRERVLAHLATCARCKAEVDAQRRLKNVFAEAAPPPPSESFLARLQGLPGGGDPDGGPPLGGGGFGLAGRPGTAGAFGVKRDDAFEFGYVPSGAHATFAGADRGFRTHPVTGRQDTDRSASSRMRFAFVAAGAVSLAAIALGGVTGSVPTDTDARGGSGGSNVTPARSQGAGASTAPENQRRRGAGPLLAQGQASGAPQAPVAPTKTPAPLLPGVPAAPAAEDVRTLTAPVVAGAAAMSPLIRPLSATPPLSLSSWSKDSGTAATPGLLAAPVPATTSSPTASPATGP
>CP029043.1|AWE52244.1|4888965_4889664_+|RNA-polymerase-sigma-factor-SigE
MLRRLLGSAGRPKSVNDTADHSHAGDFAQTATFSTDADGQAWTPPTWEEIVSTHSGRVYRLAYRLTGNQHDAEDLTQEVFVRVFRSLSTYTPGTFEGWLHRITTNLFLDMVRRKQRIRFDALGEDAAERLPSKEPSPQQVFNDAHFDADVQQALDTLAPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSRIHRGRSQLRKALAHRSPEARAERRSFVPRVAALGGGGASA
>CP029043.1|AWE52243.1|4888031_4888664_-|methyltransferase
MTGNRQTSWAFADAYVAEDDVLRWARDRAREAGLRSVSPGTGAALGLLAATVDAKAVAEIGTGTGVSGIHLLHGMRPDGVLTTVDSEPEHQQFARQAFRAAGFASNRARFIPGSALDVLPRLADAGYDLVFCDGDRLEFLDYLAESLRLLRPGGLVAFEGVFANGRTVDSGPQPTEVIRVRELLRAVRESQELVPSLLPVGDGLLCAVKR
>CP029043.1|AWE52242.1|4887770_4887938_+|DUF3117-domain-containing-protein
MAAMKPRTGDGPLEVTKEGRGIVMRVPLEGGGRLVVELTPDEADALGDALKKVVG
>CP029043.1|AWE52252.1|4899021_4899531_-|hypothetical-protein
MTSELLDQALVEEATKKSGLVWVAAPGVPARALWHVWHEGAACVVGDGPGEQPLPGLADGATVEVTVRSKDKGGRLVSWPARVVELAARSEAWEAAVADLKGKRLNAPDGEAMPERWARECRVLRLEPAGAPAPLPDGSLAEVPVPTPATTRRPIPAGLPRLLAKRRKP
>CP029043.1|AWE52253.1|4899563_4900679_-|magnesium-and-cobalt-transport-protein-CorA
MSMIRDLRAVVRPSRISLRKDSGPYETTRDPATPSAVVDCAVYRDGARVPVTTPLTPHEAMRQVRRDGGFVWIGLHEPTEAEFAGIASEFGLHPLAVEDAVQAHQRPKLERYDDTLFTVFKTVHYVEHDRLTANSEVVATGEVMCFTGRDFFITVRHGGQGSLRALRHRLQDDPELLAKGPSAVLHAIADHVVDGYIAVADAVQDDIDEVETEVFSPGRKGAPRGTDAGRIYQLKREVLEFKRAVSPLLRPMQLLSERPMRLIDPDIQKYFRDVADHVARVHEQVIGFDELLNSILQANLAQASVAQNEDMRKITSWAAIIAVPTMVCGVYGMNFDYMPETHWKYGYPVIMSVTVAICLGIHRTLKRNGWL
>CP029043.1|AWE52254.1|4901182_4901767_+|Suppressor-of-fused-domain-protein
MADVLPLVEARLRTALGEPDARAAVTFLGTDRIEVLRFQEGDIVRYATLGMSAHPMADPTAVVADPVKGPRAELVLSVRAGVADTGKVLRPLAVLAASPQVEGVVVAPGASLDVGEPLWPGAPFTSVLVAEPGGLVEDLELDAPLDPVSFLPLLPMTPNEAAWKRVHGAQALQERWLTHGTDLRDPARASVPLT
>CP029043.1|AWE52255.1|4901797_4903024_-|MFS-transporter
MDPLDAGSGGILRQPKAVWATAGASVVAFMGIGLVDPILPSIASGLDATAGQVSLLFTSYFLITAVAMLLTGFVSSRIGGRRTLLLGLALVVVFAGLSGTSGSVGELVGFRAGWGLGNALFVSTALAVIVGAAAGGSAAAILLYESALGLGMACGPLLGALLGDASWRYPFFGTAFLMAVGFLCIAAFLREQPRPARRTSLLDPVKALGHGGLASVAASAFFYNYTFFTVLAFTPFVLDMSPYRSGAVFFAWGVLLAVFSVIVAPRLQKRFGSLRVLGGSLVLLAADVLVLGYGDHTTAVVCTILSGAFIGVNNTVYTELALGVSDAPRPVASAGYNFVRWFAAAAAPFFAPRIEEWTGSLQIPFVVAAVTAVAGALVVLVRRGALTLRAEEAAPRHATRDGVGVFVN
>CP029043.1|AWE52256.1|4903189_4903831_+|hypothetical-protein
MRGEPSCPKCGGRVRAPGLFADTWQCDVHGTVHPVQPVIPPSVEALGVVVHRTRVPVWMPWPLPIGWLFTGVASAGDDRSGGRASAVACSGPGPLGGTGELILVAEELGVGLGARYAGIDGPDPGSYIDVEKPPQAKVLAAGRPTPLWHVSGTPDDRAVFAGEALGMWVWAVVWPEQSGLLMYDELVLTDLRDAGAEVELVPCGALSPRLLEP
>CP029043.1|AWE52257.1|4903944_4904802_+|phosphatase
MRIDLHTHSTASDGTDTPAELVRHAAEAGLDVVALTDHDTTRGYAEAIAALPEGLTLVTGAELSCRVDGISMHLLAYLFDPEEPALLAERELVRDDRVPRAKGMVAKLNALGVPVTWEQVSRIAGGGSVGRPHVASALLELGVVPSVDEAFTKDWLADGGRAHVEKHETDPFEAVRLVKAAGGVTVFAHPAASKRGRTVPESTIAELAAAGLDGIEVDHMDHDAGTRARLRGLAQELGLLTTGSSDYHGSRKTCVLGEYTTDPEVYGEITRRATGAFPVPGTGGV
>CP029043.1|AWE52258.1|4904915_4905521_+|antibiotic-resistance-protein-MarC
MFDVAVFGSLFLTLFVIMDPPGITPVFLALTAGRPAKVQRRMAFQAVCVAGGVIAVFGLLGHQILDYLHVSIPALMIAGGLLLLLIALDLLTGKTDEPQQTKDVNVALVPLGMPLLAGPGAIVSVILAVQKADSVGSQVSVWTAILAIHVVLWLVMRYSLLIIRVIKDGGVVLVTRLAGMMLSAIAVQQIINGVTQVIQGS
>CP029043.1|AWE52259.1|4905605_4905758_-|hypothetical-protein
MRFEIMRLDELDGTPVDSTVVDAASVNRIVQQAAATGQRLWIRPADTTAS
>CP029043.1|AWE52260.1|4905997_4906891_+|NYN-domain-containing-protein
MNDDLAALAARIDHTNELLLRMLAEVAKTPSTHAIFVDAGYLYAAAGRLVAGTEDRRAFDLDAEGLIEALIDRARTIFADSRLLRVYWYDGARRRIHTAEQQSIAELPDVKVRLGNLNANNQQKGVDSLIRSDLESLARHRAISDAALLGGDEDLVSAVEAAQGYGARVHLWGIEAPEGRNQAEPLLWEVDSQRTLDLDFFKPYVSRRTSAAYEAVAARPTREDVRFVGAQIAAKWLAARGRESLVELLPGHPYLPGSVDQDLLVEAEGLLQYSLRGQADLRRALRDGFWEHLQAQY
>CP029043.1|AWE52261.1|4906887_4907769_-|alpha/beta-hydrolase
MSTEPVYTPPPGSRACQLRTDRGAFAVVDCPVAPGVRPRGVALMLPGFTGSKEDFTLMQGPLAERGYRTVAVDGRGQHESDGPELDESAYERGELARDVLAQAAALGPLDTPLHLFGHSLGGQIARAALLLDHTPFRSLTLMASGPAQISDSQQQRVKLLRDALAVMTMAETWEAILAMGPPEEVGGPARGIGGQELLRRRWLGTKPAQLLATGRQLCAEPDRVDELAALPLPFHVLSGASDDTWPVSVLDDMAVRLHAHRTVIPGAEHSPNADQPLQTARATADFWDRVDSL

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Crispr_ID: CP029043_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029043_9

4918984-4919072

Orphan

Consensus_repeat	Method
CGGAGGGGGCGCGATGAGCGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029043_9

>merge|CP029043|9|4918984-4919072|CRISPRCasFinder
CGGAGGGGGCGCGATGAGCGGCGCGCACACCGAATTGGCCCGGCCGGCCCGTGGCGACGCGGGGACGGAGGAGGCGCGATGAGCGGCGC

>CP029043|9|8|4918984-4919072|CRISPRCasFinder
CGGAGGGGGCGCGATGAGCGGCGC	GCACACCGAATTGGCCCGGCCGGCCCGTGGCGACGCGGGGA
CGGAGGAGGCGCGATGAGCGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029043.1\|AWE52276.1\|4927031_4929818_-\|TIGR00374-family-protein	unknown	unknown	gnl\|CDD\|377103
CP029043.1\|AWE52268.1\|4915142_4916516_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371483
CP029043.1\|AWE52261.1\|4906887_4907769_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029043.1\|AWE52271.1\|4920521_4921514_+\|SDR-family-NAD-dependent-epimerase/dehydratase	unknown	unknown	gnl\|CDD\|366597
CP029043.1\|AWE52274.1\|4923681_4925229_-\|peptidase	unknown	unknown	gnl\|CDD\|312032
CP029043.1\|AWE52266.1\|4912300_4912942_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP029043.1\|AWE52277.1\|4929896_4930391_+\|6-O-methylguanine-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|226219
CP029043.1\|AWE52273.1\|4922398_4923577_+\|adenylyltransferase/sulfurtransferase-MoeZ	unknown	unknown	gnl\|CDD\|181156
CP029043.1\|AWE52265.1\|4911916_4912144_-\|DUF3107-domain-containing-protein	unknown	unknown	gnl\|CDD\|378634
CP029043.1\|AWE52264.1\|4911419_4911689_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE52278.1\|4930702_4934056_+\|DNA-helicase-UvrD	unknown	unknown	gnl\|CDD\|223288
CP029043.1\|AWE54747.1\|4910626_4911382_+\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	unknown	unknown	gnl\|CDD\|205967
CP029043.1\|AWE52279.1\|4934077_4937767_+\|ATP-dependent-DNA-helicase	unknown	unknown	gnl\|CDD\|223288
CP029043.1\|AWE52260.1\|4905997_4906891_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|224349
CP029043.1\|AWE52267.1\|4913179_4913404_-\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE52262.1\|4907877_4910148_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
CP029043.1\|AWE52263.1\|4910089_4910470_+\|hypothetical-protein	unknown	unknown	unknown
CP029043.1\|AWE52272.1\|4921501_4922335_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|371915
CP029043.1\|AWE52275.1\|4925362_4926910_-\|peptidase	unknown	unknown	gnl\|CDD\|312032
CP029043.1\|AWE52280.1\|4937777_4939181_+\|dipeptidase	unknown	unknown	gnl\|CDD\|349929

Protein	Function_ID	Function_description	E-value
CP029043.1\|AWE52276.1\|4927031_4929818_-\|TIGR00374-family-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	2.48768e-30
CP029043.1\|AWE52268.1\|4915142_4916516_+\|hypothetical-protein	gnl\|CDD\|371483	pfam11350, DUF3152, Protein of unknown function (DUF3152). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	3.02283e-71
CP029043.1\|AWE52261.1\|4906887_4907769_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.5392e-14
CP029043.1\|AWE52271.1\|4920521_4921514_+\|SDR-family-NAD-dependent-epimerase/dehydratase	gnl\|CDD\|366597	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.	1.14313e-38
CP029043.1\|AWE52274.1\|4923681_4925229_-\|peptidase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	4.0752e-35
CP029043.1\|AWE52266.1\|4912300_4912942_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.18002e-16
CP029043.1\|AWE52280.1\|4937777_4939181_+\|dipeptidase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
CP029043.1\|AWE52273.1\|4922398_4923577_+\|adenylyltransferase/sulfurtransferase-MoeZ	gnl\|CDD\|181156	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated.	0
CP029043.1\|AWE52265.1\|4911916_4912144_-\|DUF3107-domain-containing-protein	gnl\|CDD\|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	8.59601e-37
CP029043.1\|AWE52277.1\|4929896_4930391_+\|6-O-methylguanine-DNA-methyltransferase	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.47305e-16
CP029043.1\|AWE52278.1\|4930702_4934056_+\|DNA-helicase-UvrD	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.10641e-98
CP029043.1\|AWE54747.1\|4910626_4911382_+\|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein	gnl\|CDD\|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	2.06192e-92
CP029043.1\|AWE52279.1\|4934077_4937767_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	8.7305e-84
CP029043.1\|AWE52260.1\|4905997_4906891_+\|NYN-domain-containing-protein	gnl\|CDD\|224349	COG1432, COG1432, Uncharacterized conserved protein [Function unknown].	4.98938e-06
CP029043.1\|AWE52262.1\|4907877_4910148_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	7.16951e-132
CP029043.1\|AWE52272.1\|4921501_4922335_+\|phage-tail-protein	gnl\|CDD\|371915	pfam12138, Spherulin4, Spherulation-specific family 4. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.	3.67326e-22
CP029043.1\|AWE52275.1\|4925362_4926910_-\|peptidase	gnl\|CDD\|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	6.81957e-36

>CP029043.1|AWE52268.1|4915142_4916516_+|hypothetical-protein
MRLPDGTPAHGVPRFADGTPARGVPRYPDGTPARGIPRPADGTPPQGIRMPDGTPARGVPRLPDGTPARGVPRFPDGTPAHGVPRYGDGTPAHGVPRARGGHPEQREAGGGWGELRGRTGVTYGTATTGAAVPRPRRAPGSEGPRQEFVDAFDGETDGFTSRSAEQAYAPAAERADDDTPPTGVPAPAKGGKGRAFTGVAAAAVVTVLAVVVAGQVAQGGDDTDARAQSTGDQARDARDPASRTDDRPTPSAAPGAATLTYAQKMDRRFALGANATGSGKFDAVPGIDKAPGGGRKFTYRVDVERGLGLDAALFAEAVHKTLNDERSWAHGGARTFERIHSGEPDFVITLASPGTTAEWCAKSGLDTTEDNVSCDSAATERVMINAYRWAQGSETYGDRIHAYRQMLINHEIGHRLGFGHVTCDKDGELAPVMQQQTKFLDHDGITCKPNPWAFPES
>CP029043.1|AWE52267.1|4913179_4913404_-|hypothetical-protein
MTVDPTDPETFVHDDTEDDEEFDVEAPPADAAEQKADINPDEDDPLTEVDPNLANEADLIEQARVVSLDEDDYR
>CP029043.1|AWE52266.1|4912300_4912942_-|TetR/AcrR-family-transcriptional-regulator
MTAIEQTEAARPRGTRLPRRARRNQLLGAAQEVFVAQGYHAAAMDDIAERAGVSKPVLYQHFPGKLDLYLALLDQHCESLIQSVRTALASTTDNKQRVRATMDAYFAYVEDDGGAFRLVFESDLTNEPAVRERVDKVTNDCAEAICDVIAEDTGLSRAESMLLASGLGGLAQVVARSWLHSDRSVPRDQAVQLLTSLAWRGIAGFPLHGSESH
>CP029043.1|AWE52265.1|4911916_4912144_-|DUF3107-domain-containing-protein
MEVKIGVQHAPREIVLESGQSAEDVERAVSDALAGKSQLLSLVDEHGRKVLVPADRLAYVELGEPAPRKVGFGAL
>CP029043.1|AWE52264.1|4911419_4911689_-|hypothetical-protein
MLLEALSSAILGLVLAWAAYSRLPHRMPARSLVLPTGVGGALFGAFVTHTALDFGNLAVILTGAGIVAAASLSLLVRPAGRLGRRSATA
>CP029043.1|AWE54747.1|4910626_4911382_+|tRNA-2-methylthio-N6-isopentenyl-adenosine(37)-hydroxylase-MiaE-like-protein
MTTPDNTSDAADTADTPVARTGVAAQDWARASADPQYRAAVVDLLGALAYGELAAFERLAEDAKLAPTLADKAELAKMASAEFHHYEKLRDRLTEIGAEPTQAMEPFVAALDGFHRQTAPSDWLEGLVKAYVGDSIASDFYREVAARLDSDSRDLVLAVLDDTGHATFAVEKVRAAIDADPRVGGRLALWARRLMGEALSQSQRVVADRDALSTMLVGGVADGFDLAEVGKMFSRITEAHTKRMAALGLAA
>CP029043.1|AWE52263.1|4910089_4910470_+|hypothetical-protein
MPVFAWPMTSVPERATGRVISWMGKGLTMPTASRASAVSLRIPSSRKVVVRVLPLLCTRCEASAGVLGPCRGRRPPYGGTERHGTTADALALVPLRVSLRSSYALCRTAWEGCRVGASRATDRASS
>CP029043.1|AWE52262.1|4907877_4910148_-|DEAD/DEAH-box-helicase
MTLPVALSGTDVIGQAKTGTGKTLGFGLPILERVTVPADVEAGRARPEALTDAPQALVVVPTRELCQQVTNDLLTAGKVRNVRVLAIYGGRAYEPQVEALKKGVDVVVGTPGRLLDLAGQKKLDLKHIKALVLDEADEMLDLGFLPDVEKIINLLPARRQTMLFSATMPGAVIGLARRYMSQPTHIRATAPDDEGKTVANTAQFVYRAHNMDKPEMVARILQAEGRGLAMVFCRTKRTAADLADQLQQRGFAAGAVHGDLGQGAREQALRAFRNGKVDVLVCTDVAARGIDVEGVTHVVNYQSPEEEKTYLHRIGRTGRAGAKGIAITLVDWDDIPRWQLINKALELDFTDPPETYSTSPHLFEDLKIPAGTKGVLPRSERTRAGLAAEEVEDLGETGGRGARGRGGRGGREESRTAERERPARTPRRRRRTRGGTPLDAESAPAVTGTPDEAAPAESGTEPRTPRRRRRTRGGAAAETAPATAAPQQAAEAAVATAESPALETAEETPAPRRRRTRKSAEAQTAPVAEAVQASEPVAAAPEPVAEEAPAAAPRRRTRKAAATAEAPAEAALDTVEATEAKPKARRTRKAAATAEGADIPAQTAQEPEAAEAKPRRTRTRKAAATAEAVVDTAEATEAKPKARRTRKAAATAEAPSEGAEVTEAKPRRTRKTAEAALDTAEAAEAKPKARRTRKAAATAEAADIPAQATEEPAAPRRRARKTAAAVETAETAAEAKPKVRRARKASAAPAEETAES
>CP029043.1|AWE52261.1|4906887_4907769_-|alpha/beta-hydrolase
MSTEPVYTPPPGSRACQLRTDRGAFAVVDCPVAPGVRPRGVALMLPGFTGSKEDFTLMQGPLAERGYRTVAVDGRGQHESDGPELDESAYERGELARDVLAQAAALGPLDTPLHLFGHSLGGQIARAALLLDHTPFRSLTLMASGPAQISDSQQQRVKLLRDALAVMTMAETWEAILAMGPPEEVGGPARGIGGQELLRRRWLGTKPAQLLATGRQLCAEPDRVDELAALPLPFHVLSGASDDTWPVSVLDDMAVRLHAHRTVIPGAEHSPNADQPLQTARATADFWDRVDSL
>CP029043.1|AWE52260.1|4905997_4906891_+|NYN-domain-containing-protein
MNDDLAALAARIDHTNELLLRMLAEVAKTPSTHAIFVDAGYLYAAAGRLVAGTEDRRAFDLDAEGLIEALIDRARTIFADSRLLRVYWYDGARRRIHTAEQQSIAELPDVKVRLGNLNANNQQKGVDSLIRSDLESLARHRAISDAALLGGDEDLVSAVEAAQGYGARVHLWGIEAPEGRNQAEPLLWEVDSQRTLDLDFFKPYVSRRTSAAYEAVAARPTREDVRFVGAQIAAKWLAARGRESLVELLPGHPYLPGSVDQDLLVEAEGLLQYSLRGQADLRRALRDGFWEHLQAQY
>CP029043.1|AWE52271.1|4920521_4921514_+|SDR-family-NAD-dependent-epimerase/dehydratase
MRVLLIGANGYLGRFVADRLLADPAVQLTALGRGDDADVRFDLASGSPGALTRFLDAVHPGVVINCAGATRGGARELTRHNTVAVATVCEALRRSGCGARLVQIGCGAEYGPSQPGSSTAEDAVPRPGGPYGVSKLAATELVLGSGLDAVVLRVFSPAGPGTPAGSPLGRLAEAMRRAMQSGDGELKLTGLGAQRDFVDVRDVARAVHAASLSAAQGVINIGSGRAVRLRDAAAVLARVAGYGGALHELDGPPAPLRATIGHPRGDSDHTAHGAHGTHGAHAAAPVAYPDGCGSWQQADVRTARDRLGWRPRINLEESLGDIWMEAACRI
>CP029043.1|AWE52272.1|4921501_4922335_+|phage-tail-protein
MPYLTGTPATTACTDLRPGLGIPGLAHPLLASAEWGALTRPGAPVHWAVLNVADGPGTQPDPHCLEAAGRLRNAGVRVLGHLDASRLDTTRLLDTTRLGLPRLGTPAPRPSRGGGGRTLSDLMSEAQRYVDWYRVDGFYLDRCPVDRADLHETRRAVGTLRALRDKAHIVLGHGTHPHPGYAECGDQLVTFSGPWSEYRWSQVAEWTADYPPGRFCHLVHGVPRGHLDEALRIARWQGAATVWFTDRTDGGGRTDPWESMPGYWDDIVSRIGTGVSE
>CP029043.1|AWE52273.1|4922398_4923577_+|adenylyltransferase/sulfurtransferase-MoeZ
MSLPPLVEPAPELTVDEVRRYSRHLIIPDVGMDGQKRLKNAKVLCVGAGGLGSPALMYLAAAGVGTLGIVEFDEVDESNLQRQIIHSQADIGRSKAESARDSVKGINPYVNVVLHEERLEADNVMDIFSQYDLIVDGTDNFATRYLVNDACVLLNKPYVWGSIYRFDGQASVFWSEHGPCYRCLYPEPPPPGMVPSCAEGGVLGVLCASIGSIQVNEAIKLLAGIGEPLVGRLMIYDALEMQYRQVKVRKDPNCAVCGENPTVTELIDYEAFCGVVSEEAQEAAAGSTITPKQLKEWIDDGENIDIIDVREVNEYEIVSIPGARLIPKNEFLMGTALENLPQDKKIVLHCKTGVRSAEVLAVLKSAGFADAVHVGGGVIGWVNQIEPDKPVY
>CP029043.1|AWE52274.1|4923681_4925229_-|peptidase
MARFVRWTALTAAAALLATGCGGGSSDDPKTDGDTGGTSASAPAGSPEAALPSSLTSQELDWGRCRATEGSPAPGDEWQCADLKAPLDWKKPEGRTIDLALIRAKATGDDRIGSLLFNFGGPGGSGVDRLPWYSTGASALRERYDLVSWDPRGVGSSEGVRCRRDQEIQASEAVDLTPDTAAEETAYFKDAADFGKGCQKTGGSLIAHVSTADTARDMDLMRQVLGDEKTHYFGISYGTELGGVYSHLFPKNVGRIVLDAVVDPSADAAGHAENQARGFQRALNNYLESTGKSAEEGTREVVDLLKRIDAKPLPTSSSRDLTESLALTGIIRPLYSKASWPTLTSALQAAQQGDGTELLALADDYNDRQDSGKYGTGSHSQRVISCLDDRQRPTPEDAKKALPHFEKVSPVFGPMLGWDTAGWCHDWPVPGQYDTPEVSAPGSAPILLIGNTGDPATPYEGTRRMADELGKGVGVMLTWKGEGHSAYAKGSSCVDSTINDYLLEGTVPKDGKVCS
>CP029043.1|AWE52275.1|4925362_4926910_-|peptidase
MPNPPRLRAAALTAAALLLASALAACGDDDSGDRDLTAQKLTWRDCPAPSQAQGGGGSPSPLPDDGTWQCATMKAPRDWDEPEGDTIDIELIRVRTTAPEDRRIGSLIFNFGGPGGSGVTTLPAFGSSYETLRTRYDLVSFDPRGVGRSAPVWCEDDQQLDAYFQQDATPDDAAERTEFLDSTKEFNSACEKNSGAMLPHVGTTEAARDLELMRQVLGDDKLHYFGISYGTELGGVYAHLFPDKVGRAVFDAVVDPAQNPEQGSLAQAKGFQLALGNFAEDCVSRVEDCPIGDAAEDVENRIAKLLKDLDSKPIKGIFPRELTQAAATSGILQALYSKDFWPYLTEGLEQAYDGDGSTLMLLSDALNGRSENGEYNNSTAANVSINCADDKPRYTPAFVEDRLPEFRAASELFGDSLAWSLLSCTDWPVAGAADHPDVSAPGAAPILVVGNTGDPATPYEGARKMAQALGDGVGVEMTYRGEGHGAYESDNKCVRDAVNGYLLDGKVPTAGTVCS
>CP029043.1|AWE52276.1|4927031_4929818_-|TIGR00374-family-protein
MKQQGVHPEDAESTSGASSRPDTARAGGKDPEGAAAGEEEQVGEGSGTGPEAGDTAGRDSEEAYADEVEGDEPLLPARVHRPSDLVRVLVGVLGMVLLLAIAAFAHGTTSGLEQDINKGTGQAPDVFSKIAGLVSSIAILLVPVAFAIERLIKRDGLRIADGVLAAVLAHGVTLATDLWVARAAPESIRDALTQPSPGDVGSLTDPVHGYLAPVIAYMTAVGMSRRPRWRAVLWAVLVLYAFSMLVTGYTTPFSILLTLLIGWAVAYGTLYAVGSPNVRPTGRTLMAGLRHVGFRPVSAAREEVADAQETATDRGRRYFVTLEDGPPLDVTVVDREQQAQGFFYRAWRNLTLRGFATRSSLQSLRQALEQEALLAYAAIAAGANAPKLIATSELGPDAVMLVYEHTGGRTLDSLADDEITDDLLRDTWLQVKALQSRRIAHRRLVGDAILVDRSGKVIITDLRIGEIAANSLLLRMDISQLLVTLGLRVGAERAVASAVGVLGPDAVADCLPMLQPIALSRSTRATLRRLARERAEREREAVLEASRVSKQARSEEAATDAGTGSDKPDKKTVRAQARAEKRALDEALDDAREEDLLTLIRHEVLRIRPQAPVEPARLERVRPRTLISFIAGAIGAYFLLTQLTHIEFGPLVANAQWGWVAAAVLFSAASYFAAAMALLGFVPERVPFRRTVAAQVAGSFVKIVAPAAVGGVALNTRFLQRAGVRPGLAVASVGASQLFGLGCHILMLLAFGYLTGTEKTPSLSPSRTVIAGLLTVAVLVLVVTSVPFLRKFVVTRVRSLFAGVVPRMLDVLQRPQKLITGIGGMLLLTACFVMCLDASIRAFGSEGTSLSIASVAVVFLAGNALGSAAPTPGGVGAVEATLTVGLIAVGLPSEVAAPAVLLFRLLTLWLPVLPGWLAFNHLTRKGAL
>CP029043.1|AWE52277.1|4929896_4930391_+|6-O-methylguanine-DNA-methyltransferase
MQTRGRTVCRKRGPGARATHGGGRVALSVGCGRMGRMSEESLPDTARPERADALPEYAERVLEVAELIPPGRVMTYGDVAEWLEEGGPRQVGRVMALYGGAVPWWRVVRADGVLLPGHELRALEHYRAEGTPLKDASRAAEGHLPRLDMRRARWDGGGRAQGHT
>CP029043.1|AWE52278.1|4930702_4934056_+|DNA-helicase-UvrD
MSSSSSTRRLSHTPVRQGARGAYRLVRTPPAQAAPPRLDAAQRSVVDHRTGPMLVLAGPGTGKTTTLVESVAERIARGGDPERILVLTFSRKAAVELRDRMALRIGAARAPQATTFHSFCYALVRAHQDHDLFVDPLRLLSGPEQDVTVRELLAGQPELERLGLAHVRWPDELRACLTTRGFADEVRAVLARSRELGLGPGALDDFARRIGRPDWRAAASFLAEYLDVLDLQGVLDYAELVHRAVLLARRPDAAEALAARYDAVYVDEYQDTDPAQVRLLRALAGGGRTLVAFGDPDQSIYTFRGADVNGILEFPHAFPRADGRPAPVEVLRVSRRSGAALLAATRLLTRRMPLTRLPADKVRAHRELTPVREGGRVEVFTYPTAGTELDNVADILRRAHLEDGVPWSDMAVLVRAGSRTIPTVRRALTAAGVPLDIDGDDLPLRHEPSVAPLLTALRAVATAEAGLSDRQEHGSPEDPDGPETTTDEAPCWLDTETALTLLTSPLAGMDAADLRRLGRALRDEERAGGNPLPPPSDDLLARALAEPERLAVHDPAYARGAQRLGALLRKARERLAGGGTAEEALWDLWEGTPWPTRLERAARRGGAAGRNADRDLDAVCALFATAARAEERTGGRGALNFLEEIDAEDIAADTLSRRAVRPDAVRLMTAHRSKGLEWRLVVVAGVQEGLWPDLRRRGSLLEADRIGRDGLAEPLTPGALLAEERRLFYVAVTRARERLVVTAVKAPADDGDQPSRFLTELGVDPVDVTGRPRRPLSVAALVAELRATTVDPRASDALRRAAALRLARLAALSDDDGRPLVPAAHPYRWWGMFEPTESKVPLRDRDQPVVLSGSALDQLANTCALQWFLGREVKADAPATVAQGFGNVVHVLADEVASGHTPADLDVLMERLDSVWNALAFDAPWKSAQEKSHARAALERFLRWHVMDRAGRTPVASEHDFDVTLEAGDFEVRIRGQMDRVEADADGRAYVVDFKTGKQAPSAAEVARHPQLAVYQLAVREGAVDDAFDGARPEPGGAELVQLRQGAAKRDGGETLPKVQAQQPLDGPEGEWVGDLLATAAGKVLDERFTPTAGQHCTHCAFRASCSARPEGRHVVE
>CP029043.1|AWE52279.1|4934077_4937767_+|ATP-dependent-DNA-helicase
MTDRTTRSDLRFPHRGRPNGHGLSVAAASLPQVPARITDPEQLKELLGIPFTPEQTACITAPPAPQVIVAGAGSGKTTVMAARVVWLVGTGQVAPEQVLGLTFTNKAAGELAERVRKALVRAGVTDPDAIDPDRPPGEPVISTYHAFAGRLLTDHGLRIGLEPTSRLLADATRYQLAARVLREAPGPYPALTRSFADLVSDLLALDAELSEHLVRPEALRAHDAELLLTLQNTRLSNADLRKVPEAAAARRELADLVVRYRAAKRERDLLDFGDQIALSARLAGMPEVGRLLRDEFRVVLLDEYQDTSVAQRVLLAGLFGEGTGHPVTAVGDPCQAIYGWRGASVANLDDFPEHFAHADGRPATRQSLSENRRSGGRLLDLANGLAEPLRAMHAGVEALRPAPGAERDGIVRCALLTTHAEEIDWIADSIAHLVNTGKAPGEIAVLCRTAGDFAEIQGALVARDVPVEVVGLSGLLHLPEIADLVAVCEVLQDPGANASLVRLLTGPRWRIGPRDLALLGRRARLLVSHARVDGDDDPDRRLAEAVEGIDPAEVISLADALDTFLETPLDGTGDDDGLPFSPDARVRFARLAAELRDLRRSLSDPLMDVLHRVLAVTGLEVELSASPHALAARRRETLSNFLDIAASFAAGDHEASLLAFLAFLRTAAQYEKGLDNALPGGDNTVKVLTAHKSKGLEWDVVAVPGLVTGTFPSAQGREKWTAQGKVLPHELRGDADTLPDVTSWDSRGLKAFHEAMKEHQHTEELRLGYVTFTRPRSLLLGSGHWWGPSQKKPRGPSDFLLALHDHCASGHGEIEVWADEPAEDAENPALLREGAEHAWPLPLDDTALARRRAAAETVLAHLEQLASQDAVVAAHDPDTYDDPDWPPPPDEDADLGEPDLWDEAPLDEAPLDHDPFEEDPFEDDPYEGGAYDEEEDGTRHESAPEPQTPARPAIPHQAAQPGTRTPDRDHGPPSPVPPPRERLTPEEARTLASWDRDLDALTGELLRARASVMDVPLPASLTASQLMRLAADPDGFAQELARPMPRPPQPAARRGTRFHAWVEARFEELTLPMLDPDELPGSEAEIADERDLEALKAAFERTEYAHRTPYRVEAPFQLAIAGRVVRGRIDAVYRSGDGSEATYEIVDWKTNRGRTADPLQLALYRLAWAEQQGVPLEAVDAVFLYVRSGEVVRPDALPDRAALERLLTGEPAGETECEEPPNQDVGAGR
>CP029043.1|AWE52280.1|4937777_4939181_+|dipeptidase
MSQTPDDAVRTYIEQHSTAFLDDLAEWLRIPSVSAQPAHAPDVRRSADWLAAKLRETGFPAVEVWPTPGAPAVFAHWPSGDPEAPTVLVYGHHDVQPAAREDGWDSEPFEPVVRDGRLYARGAADDKGQVFFHTLGVRAHLATTGRTAPAVNLKLLIEGEEESGSPHFRALVEESADRLAADAVIVSDTGMWSEDTPTVCTGMRGLAECEIRLYGPDQDIHSGSFGGAVPNPATAVARLVAALHDDHARVAIPGFYDGVVELTDRERELFAELPFDEARWLRTARSHATHGEVGHTTLERVWARPTAEVNGIGGGYQGPGSKTIIPSSALVKLSFRLVAGQDPDHIEKAVRAWAAEQVPAGIRCEITFSGATRPCLTPLDHPALQSVVRAMGRAFEGPVRFTREGGSGPAADLQDVLGAPVLFLGISVPSDGWHAPNEKVELDLLLKGVETTAYLWGDLAAHWRHAP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	3453688-3453743	0	1.0
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	3776861-3776916	0	1.0
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	4211536-4211591	0	1.0
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	4884460-4884515	0	1.0
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	6079100-6079155	0	1.0
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	6501094-6501149	0	1.0
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	6731286-6731341	0	1.0
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	406000-406055	1	0.982
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	417130-417185	1	0.982
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	5607068-5607123	1	0.982
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	6218501-6218556	1	0.982
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	6836500-6836555	1	0.982
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	24972-25027	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	316730-316785	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	494137-494192	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	1326458-1326513	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	1849342-1849397	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	2027899-2027954	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	4515320-4515375	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	6123964-6124019	2	0.964
CP029043_8	8.1\|4898862\|56\|CP029043\|CRISPRCasFinder	4898862-4898917	56	CP029043.1	7314109-7314164	2	0.964

1. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 3453688-3453743, mismatch: 0, identity: 1.0

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
********************************************************

2. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 3776861-3776916, mismatch: 0, identity: 1.0

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
********************************************************

3. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 4211536-4211591, mismatch: 0, identity: 1.0

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
********************************************************

4. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 4884460-4884515, mismatch: 0, identity: 1.0

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
********************************************************

5. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 6079100-6079155, mismatch: 0, identity: 1.0

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
********************************************************

6. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 6501094-6501149, mismatch: 0, identity: 1.0

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
********************************************************

7. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 6731286-6731341, mismatch: 0, identity: 1.0

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
********************************************************

8. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 406000-406055, mismatch: 1, identity: 0.982

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagtccg	Protospacer
****************************************************.***

9. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 417130-417185, mismatch: 1, identity: 0.982

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccgcccacccgcgtacaaccagtacgcgggagcccg	Protospacer
*********************** ********************************

10. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 5607068-5607123, mismatch: 1, identity: 0.982

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
accccctctcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
****** *************************************************

11. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 6218501-6218556, mismatch: 1, identity: 0.982

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acgcccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
** *****************************************************

12. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 6836500-6836555, mismatch: 1, identity: 0.982

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagtccg	Protospacer
****************************************************.***

13. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 24972-25027, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccgcccacccgcgtacaaccagtacgcgggagtccg	Protospacer
*********************** ****************************.***

14. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 316730-316785, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccgggctcccgcgtacaaccagtacgcgggagcccg	Protospacer
************************ * *****************************

15. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 494137-494192, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccgggctcccgcgtacaaccagtacgcgggagcccg	Protospacer
************************ * *****************************

16. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 1326458-1326513, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccgggctcccgcgtacaaccagtacgcgggagcccg	Protospacer
************************ * *****************************

17. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 1849342-1849397, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acgccctctcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
** *** *************************************************

18. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 2027899-2027954, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acccccactcgccgcaccggccgggctcccgcgtacaaccagtacgcgggagcccg	Protospacer
************************ * *****************************

19. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 4515320-4515375, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acgccctctcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
** *** *************************************************

20. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 6123964-6124019, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acgccctctcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
** *** *************************************************

21. spacer 8.1|4898862|56|CP029043|CRISPRCasFinder matches to position: 7314109-7314164, mismatch: 2, identity: 0.964

acccccactcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	CRISPR spacer
acgccctctcgccgcaccggccggccacccgcgtacaaccagtacgcgggagcccg	Protospacer
** *** *************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029043_3	3.1\|2724352\|20\|CP029043\|CRISPRCasFinder	2724352-2724371	20	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	476962-476981	1	0.95
CP029043_7	7.1\|4507216\|29\|CP029043\|CRISPRCasFinder	4507216-4507244	29	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	1138833-1138861	5	0.828
CP029043_7	7.1\|4507216\|29\|CP029043\|CRISPRCasFinder	4507216-4507244	29	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	995981-996009	5	0.828
CP029043_5	5.1\|3411980\|31\|CP029043\|PILER-CR	3411980-3412010	31	NZ_CP021805	Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence	703268-703298	6	0.806
CP029043_7	7.1\|4507216\|29\|CP029043\|CRISPRCasFinder	4507216-4507244	29	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	91871-91899	6	0.793
CP029043_5	5.1\|3411980\|31\|CP029043\|PILER-CR	3411980-3412010	31	NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	31178-31208	7	0.774
CP029043_5	5.1\|3411980\|31\|CP029043\|PILER-CR	3411980-3412010	31	NZ_CP008907	Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence	99771-99801	7	0.774
CP029043_7	7.1\|4507216\|29\|CP029043\|CRISPRCasFinder	4507216-4507244	29	NZ_CP013345	Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence	228977-229005	7	0.759
CP029043_7	7.1\|4507216\|29\|CP029043\|CRISPRCasFinder	4507216-4507244	29	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	811961-811989	7	0.759
CP029043_5	5.1\|3411980\|31\|CP029043\|PILER-CR	3411980-3412010	31	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	7788-7818	8	0.742
CP029043_5	5.1\|3411980\|31\|CP029043\|PILER-CR	3411980-3412010	31	NZ_LR134449	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 7, complete sequence	36840-36870	8	0.742
CP029043_7	7.1\|4507216\|29\|CP029043\|CRISPRCasFinder	4507216-4507244	29	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	2129387-2129415	8	0.724
CP029043_7	7.1\|4507216\|29\|CP029043\|CRISPRCasFinder	4507216-4507244	29	NZ_CP010859	Marinovum algicola DG 898 plasmid pMaD4, complete sequence	111581-111609	8	0.724

1. spacer 3.1|2724352|20|CP029043|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 1, identity: 0.95

gcggttcgggatccggcttc	CRISPR spacer
gcggttcgggatccggcttg	Protospacer
*******************

2. spacer 7.1|4507216|29|CP029043|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.828

tccggggcggggccggccgtccagccgtc	CRISPR spacer
gcatgcgcggggccgggcgtccagccgtc	Protospacer
 *  * ********** ************

3. spacer 7.1|4507216|29|CP029043|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 5, identity: 0.828

tccggggcggggccggccgtccagccgtc	CRISPR spacer
gcatgcgcggggccgggcgtccagccgtc	Protospacer
 *  * ********** ************

4. spacer 5.1|3411980|31|CP029043|PILER-CR matches to NZ_CP021805 (Sinorhizobium meliloti strain T073 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.806

--ccggctccgggctgaagacctgcggagcgga	CRISPR spacer
caccag--acgggctgaagaactgcggtgcgga	Protospacer
  **.*   *********** ****** *****

5. spacer 7.1|4507216|29|CP029043|CRISPRCasFinder matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

tccggggcggggccggccgtccagccgtc	CRISPR spacer
gcgcgggcggggccggccgtcccaccgtg	Protospacer
 *  ****************** .****

6. spacer 5.1|3411980|31|CP029043|PILER-CR matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 7, identity: 0.774

ccggctccgggctgaagacctgcggagcgga	CRISPR spacer
cctgctccgggctgaagaccggctgcgggtc	Protospacer
** ***************** ** * * *

7. spacer 5.1|3411980|31|CP029043|PILER-CR matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 7, identity: 0.774

ccggctccgggctgaagacctgcggagcgga	CRISPR spacer
cctgctccgggctgaagaccggctgcgggtc	Protospacer
** ***************** ** * * *

8. spacer 7.1|4507216|29|CP029043|CRISPRCasFinder matches to NZ_CP013345 (Sphingopyxis macrogoltabida strain 203N plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

tccggggcggggccggccgtccagccgtc	CRISPR spacer
gatcgcgccgggccggccgtccagccggc	Protospacer
  . * ** ****************** *

9. spacer 7.1|4507216|29|CP029043|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.759

tccggggcggggccggccgtccagccgtc	CRISPR spacer
gccggggcggggctggccgtcctgggcgc	Protospacer
 ************.******** *    *

10. spacer 5.1|3411980|31|CP029043|PILER-CR matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 8, identity: 0.742

ccggctccgggctgaagacctgcggagcgga	CRISPR spacer
agcgctccgggatgaagaccggcggataggc	Protospacer
   ******** ******** *****  **

11. spacer 5.1|3411980|31|CP029043|PILER-CR matches to NZ_LR134449 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 7, complete sequence) position: , mismatch: 8, identity: 0.742

ccggctccgggctgaagacctgcggagcgga	CRISPR spacer
acgactccgggctgatgacctgcgcggacgc	Protospacer
 **.*********** ******** .*  *

12. spacer 7.1|4507216|29|CP029043|CRISPRCasFinder matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 8, identity: 0.724

tccggggcggggccggccgtccagccgtc	CRISPR spacer
gcaacagcggggccggccgcccagccgcg	Protospacer
 * . .*************.*******.

13. spacer 7.1|4507216|29|CP029043|CRISPRCasFinder matches to NZ_CP010859 (Marinovum algicola DG 898 plasmid pMaD4, complete sequence) position: , mismatch: 8, identity: 0.724

tccggggcggggccggccgtccagccgtc	CRISPR spacer
caatgggcggggctggccgaccagccggt	Protospacer
.   *********.***** ******* .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage