CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP021067	Burkholderia cenocepacia strain PC184 Mulks chromosome 1, complete sequence	1 crisprs	csa3,cas3,Cas14u_CAS-V,DinG,c2c9_V-U4,cas14j	1	0
CP021069	Burkholderia cenocepacia strain PC184 Mulks chromosome 3, complete sequence	0 crisprs	DEDDh,csa3,RT,cas3,WYL,c2c9_V-U4,DinG,Cas14u_CAS-V	0	2
CP021068	Burkholderia cenocepacia strain PC184 Mulks chromosome 2, complete sequence	0 crisprs	RT	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP021067_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP021067_1

1777125-1777201

Orphan

Consensus_repeat	Method
ACGTCGACGGGCCTGTCGTCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP021067_1

>merge|CP021067|1|1777125-1777201|CRISPRCasFinder
ACGTCGACGGGCCTGTCGTCGGCAAACAGCTCGGTTGCGTCGCTTTCGACCTCGACGTCGACGGGCCTGTCATCGGC

>CP021067|1|1|1777125-1777201|CRISPRCasFinder
ACGTCGACGGGCCTGTCGTCGGC	AAACAGCTCGGTTGCGTCGCTTTCGACCTCG
ACGTCGACGGGCCTGTCATCGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP021067.1\|AWG28810.1\|1782702_1783368_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143586
CP021067.1\|AWG29820.1\|1776535_1776865_-\|hypothetical-protein	unknown	unknown	unknown
CP021067.1\|AWG28811.1\|1783758_1784904_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371305
CP021067.1\|AWG28814.1\|1787761_1789735_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|273628
CP021067.1\|AWG29819.1\|1781249_1782581_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|240612
CP021067.1\|AWG28812.1\|1784918_1786073_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371305
CP021067.1\|AWG29817.1\|1770396_1771185_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP021067.1\|AWG29816.1\|1763713_1764811_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
CP021067.1\|AWG28805.1\|1771477_1771783_+\|NIPSNAP-family-protein	unknown	unknown	gnl\|CDD\|311781
CP021067.1\|AWG28807.1\|1772977_1773196_+\|transcriptional-regulator	unknown	unknown	unknown
CP021067.1\|AWG28803.1\|1765489_1768870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227665
CP021067.1\|AWG28806.1\|1772093_1772744_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
CP021067.1\|AWG28804.1\|1768866_1770225_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372507
CP021067.1\|AWG28808.1\|1773291_1774194_+\|aminomethyltransferase	unknown	unknown	unknown
CP021067.1\|AWG29822.1\|1789792_1790284_-\|hypothetical-protein	unknown	unknown	unknown
CP021067.1\|AWG29821.1\|1786099_1786567_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372517
CP021067.1\|AWG28809.1\|1775157_1776609_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|240612
CP021067.1\|AWG28815.1\|1790280_1791084_-\|Diguanylate-phosphodiesterase	unknown	unknown	gnl\|CDD\|225110
CP021067.1\|AWG29818.1\|1778581_1780792_-\|hypothetical-protein	unknown	unknown	unknown
CP021067.1\|AWG28813.1\|1786600_1787737_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371305

Protein	Function_ID	Function_description	E-value
CP021067.1\|AWG28810.1\|1782702_1783368_+\|hypothetical-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	2.48954e-37
CP021067.1\|AWG28812.1\|1784918_1786073_+\|hypothetical-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
CP021067.1\|AWG28805.1\|1771477_1771783_+\|NIPSNAP-family-protein	gnl\|CDD\|311781	pfam07978, NIPSNAP, NIPSNAP. Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.	6.52853e-27
CP021067.1\|AWG28814.1\|1787761_1789735_+\|SAM-dependent-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	2.49747e-23
CP021067.1\|AWG29819.1\|1781249_1782581_+\|hemagglutinin	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	7.44794e-13
CP021067.1\|AWG28815.1\|1790280_1791084_-\|Diguanylate-phosphodiesterase	gnl\|CDD\|225110	COG2200, Rtn, c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms].	3.9273e-39
CP021067.1\|AWG29817.1\|1770396_1771185_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.73307e-12
CP021067.1\|AWG29816.1\|1763713_1764811_-\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	1.65876e-172
CP021067.1\|AWG28811.1\|1783758_1784904_+\|hypothetical-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0
CP021067.1\|AWG28803.1\|1765489_1768870_+\|hypothetical-protein	gnl\|CDD\|227665	COG5373, COG5373, Predicted membrane protein [Function unknown].	2.50113e-97
CP021067.1\|AWG28806.1\|1772093_1772744_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	8.59532e-23
CP021067.1\|AWG28804.1\|1768866_1770225_+\|hypothetical-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	1.59263e-128
CP021067.1\|AWG29821.1\|1786099_1786567_+\|hypothetical-protein	gnl\|CDD\|372517	pfam13211, DUF4019, Protein of unknown function (DUF4019). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 130 and 183 amino acids in length. There is a single completely conserved residue E that may be functionally important.	5.89903e-34
CP021067.1\|AWG28809.1\|1775157_1776609_+\|hemagglutinin	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	5.7955e-16
CP021067.1\|AWG28813.1\|1786600_1787737_+\|hypothetical-protein	gnl\|CDD\|371305	pfam10933, DUF2827, Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.	0

>CP021067.1|AWG29820.1|1776535_1776865_-|hypothetical-protein
MVAPEPSATEPVTFALAPAPKASAFVAPDTAVSPIAMPPAAVVVLLLPSATEPWPIALLLLPIATAPFAAVVPAALPAAMLFAPSVTAPVPFAMFGSPIATAPLPLAVC
>CP021067.1|AWG28809.1|1775157_1776609_+|hemagglutinin
MNRTYRSIWNEALGAWVAASEIDSARGKPNKSAVVVAAVAALAISLPGLAEANTLNTQQTCFTGSNGAVGRINPGGTQNQAGDGSGTYSVVAGCNSNGNGWTGVTVYGSFAQATGNGAVATGMQSSAGLWGVAAGLETTASGAGATALGFGSTANALNSVAIGGAGGNGTTPLSQANSTIASGAGAVAIGSNATKGAQSAASDGIAIGGQSSVASTATSGIAVGRGATVNGAYGIAQGDGAVAGVAGNTSITNNVAVGAAASSTGANAIALGGSAKASGANSMATGFNASATGATSYAGGFGAVASNTDATAIGNQATASGAQDTAIGVTAIATGGGTGSRSATRRPQRPVMQPPLARQPARRPDKHRHLASARMQAARTQRRWVSELSRRISRRWLPAISRPPQVPPLWHWEVLQQRGRIRRLQSATPRAFRRRPVWVRLRLVTVQRSSPGSAPLRSAVNRPRAVTARWRSAIRTLRTARAP
>CP021067.1|AWG28808.1|1773291_1774194_+|aminomethyltransferase
MTDTLQEEHAAADHAMRNWTFERQGPVRIGSDAHKQMFCRMLLDTHNPYKPAVIDWPALQPAELRRLTSLPIWDIAVQTEGRASIRVATYAATVDDPLLRRALEMDGGEEARHKVVLSKLVEAYGIRLAPEPAYPAPTDPEWSWMMTGFSECIDSFFAFGLFRSAQRSGYFPPELVETFEPVIQEEGRHILFFVNWYAWYWRTMPWWRRPWFFARVAAVWVQLIRDRMSIARGIDADGAARDANFPATGTADIGDALNPRELIELCLVENDRRMAGYDKRLLRPMFVPRMARFALRFLKK
>CP021067.1|AWG28807.1|1772977_1773196_+|transcriptional-regulator
MNRTIRYKGYEVAPAAARLPNGLFAANLTIERASGGPSPRSVSFDAIDFFFEEEHALAYASRWGRLWVDTNA
>CP021067.1|AWG28806.1|1772093_1772744_+|NADPH-dependent-oxidoreductase
MTAFDQHRRPFVVGIGGTTRAASSTERALSFALRGAQAAGARTRLFDGPFLHTLPHYAPEHKTLTDAQRELIDAVRQADAIIIATPGYHGGVSGLVKNALDTLEELRADERPYLDGRAVGLIVTAYGWQAAGTVLTSLRSIVHALRGWPTPFGATVNTLETRFESADSCSDPKVVAQLETVGTQAAEFALAFASHRAASHAASVDALAPVLKVANQ
>CP021067.1|AWG28805.1|1771477_1771783_+|NIPSNAP-family-protein
MITCFLRYVVDPYKLVEFETYGKMWIPLVEQFGGTHHGYFLPSEGASNIALAMFSFPSLAEYERYRERSKDDPACQAAFRYAEETRCIVSYERSFFRPVFE
>CP021067.1|AWG29817.1|1770396_1771185_-|N-acetyltransferase
MSIPWNAIADPTPAALPSRCVDRVIVRRFDPAIDSYAQLTPMLHRAFARLGAMGLNCTCVDQDEDVTRCRAEAGECYVAVCGGRVVGTATLYATDPSSACSLYRREGVASVRQVAVDPACQSRGIGALLLSFAEQWAALRGYALLALDTPHPAAHLLAFYGAQGFEVVDVMRFAGKRYDSAILCKRPVAHAVRRVSPVSRLAARVAAVRRVMLAWAPRIVAVARGESGVRRAGRFAARRAAGAASCRSSPWRPRQHGRFMAR
>CP021067.1|AWG28804.1|1768866_1770225_+|hypothetical-protein
MKRLAALLGLSLLASFAAADGAPNAGRVTQRFALDLDGSAAYYQLTVPQPVYAASRRDDLGDVRIFNGAGEPVPYSLDAPAAAAPAVPPSRAPVHWFPLPPARAEHGNAPLGVTVGPDGALRAVVASPSRPGRGADLVDLSHTDGSIDALLVHVDDDSYQGRVAVEASDDLRSWRPLGSTQLLKVGRGNDMLVQERIALDGAAPRYLRLDWLDGAPAIASIDVETHPRDARGTDTASVPRQWRDAVRIRAGAAPGEYLFDTDGAYPVDRVRIDLPQPNTVARATLQSRADARAPWRDVADAVLFRLQGKGGEQRNPPLEFIANTDRAWRIVVDMRNGGLGSGQPAIAIGWHPAALTFVARGTPPFTLGVGDASLVSSAVSRDALLVGMAPEVRPARVGAALPASAVAPAAAADADAGRRYVLWGALVVAVGVLGAIAWRVAKAGSDTRSRDE
>CP021067.1|AWG28803.1|1765489_1768870_+|hypothetical-protein
MNWAFAVIGFIVGGIAALIGDFSAGSGSLLGAAVGFCIGHALRQRKQQNQRAAADAFAISATPPPTPLPLADRVARLEATVDTLTRELDVLRAQLAGAKAGAATSGDIAQTASAGASAAPLPAHVPATPTPRPVAARADTPASTSTSAPAAAPAPATAARTAAASAQANTTASPPATPTRPAPPAPPAPREPGFAERAFGAARDWLLGGNTVVRVGIIVLFFGVAFLLKYAADNDMLPIEFRLAGTALAAAALLAIGWRARARRAAYGLVLQGGGVGILYLTIFAATKLYALLPVGAAFPLMVAVCALGAFLAVRQNALPLAFMGSAGGFLAPILLSTGQGNHVALFSYYALLNAGIFAIAWFKAWRPLNLLGFVFTFTIGSAWGVTAYRPALFASTEPFLILFFLMYVGIALLYAVKRELALRHYVDGTLVFGTPIVATALQASLVKGMPFVLAWSAVALSAFYVAVAAWLARRRDRLGLLFESMLALAVIFATLAVPLAFSGPTTSAAWAIEGAAVVWLGVRQKRLLAFGFGLLMQVAAAGAFFTSLLGPADPAALPVLNGPTIAMLLIALAGLFTGWWLHGRGEARAWHAWMPEIGVAAAAWGLLWWISGGLHEILVHASRHVDLHADRFVVDTTALFAAGTAWLAHVARRRLAWPLAEWPALALTPVLALLALRAFDAHEAPLSGMGAFAWPVAVGAGFALLWRQSRGTTGATAAIGTAHSVAAGILAPLHTLAFWTLCGLLSLEGFWRLRTFVPEGAWSWSAWAYGFGALLLLVSDPGSRLRWPVAAFPRAYQVWGAAPLAALLWLWSLASTVSDGDAAPLFWLPLLNPLDVAQALVFVAFAVWLRRLKTLGVAWHPRVVDYLAIATVFLWFNALLLRTLHQRFHLGYDIDTVLSSFGIQQVFMVGWSLFAFAGMWLTRRDGIARLCAFASLPLIVVMWVWTFYANFTQDGGSWARVPLFNPLDLVLAVVYGLAASWFVRARRLGWSFGNYRVELLGAAGATGFLWLNAILLRTLHHWAGVPYEFGAMAESTLVQASVSVYWTVCALAITIWATRRGLRPLWFVGAALLALTVVKLFLFDLSHVTGIERIVSFIGIGVLLLLIGYFSPLPPKAAAQQDGRP
>CP021067.1|AWG29816.1|1763713_1764811_-|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MLAAGATKDDVLERTGQVVGVHNVSFDVQEGEIFVLMGLSGSGKSTLIRLVNRLVDPSAGKVLIDGLDVASARRSALTALRRKDMSMVFQSFALMPHRTVVSNAAFGLEVGGMGKKERERRAMEVLEQVGLAPFSHKLPSELSGGMQQRVGLARALAVNPSLMIMDEAFSALDPLKRREMQDVLLQLQKEQRRTIMFVSHDLEEALRIGNRIAIMEGGRLVQVGTPQDIIANPADDYVRAFFDGIDTSRCLTAGDLMQTGAVPLVSKCDAANVAASLNGSAEYAFVLDAARKIRGFVTREALGQDTPSVRPIESIRRDASLEHVVARVVASPNALPVVDDDGCYCGSVDRALILKAITRSRGSHV
>CP021067.1|AWG29818.1|1778581_1780792_-|hypothetical-protein
MPVEVEVDRDVIELVADDRPVEVEVDRELIELFADERPVEADVDSEVTELLVELRPVDSEPMELVADDKPVEVEVDRDVIELLADERPVEVEVESEVIELLADDRPVEVEVDNEVIELLADERPVEVEVDRDVIELLADERPVEVEVESDVIELLADDRPVEVEVDNEVIELLADERPVEVEVDRDVIELLADERPVEVEVESDVIELLADERPVEVEVDSEVIELLAEDRPVEVDVDSESIELLAEDRPVEVEVDSEVIELLAEDRPVEVDVDSESIELLAEDRPVEVEVDSEVIELLADERPVEVEVDSEVIELLAEDRPVEVDVDSESIELLAEDRPVEVEVDSEVIELLADDRPVDVEVESEVIELLADDRPVEVEVESDVIELLADDRPVEVEVDSEVIELLADDRPVEVEVESDVIELLADDRPVEVDVDSESIELLAEDRPVEVEVESEVIELLADERPVEVEVDSEVIELLADDRPVEVEVESDVMELLAEDRPVEVEVDKDVIELLADERPVEVEVDSDVIELFADDRPVEVEVDSEVIELLADERPVEVEVDRDVIELLADERPVEVEVDSDVIELLAEDRPVDVEVESDVIELLADDKPVEVEVESDVMELLADDRPVEVEVDNEVIELLAEDRPVEVEVDKDVIELLADERPVEVEVESEVIELLADDRPVEVEVDSEVIELLAEDRPVEVEVDSEVTELLVELRPVDSDEMALVAVPTCWATE
>CP021067.1|AWG29819.1|1781249_1782581_+|hemagglutinin
MGANNTATGDGAVSLGNQNTATGASALALGSSNQATADNTIALGSQATASATGAQAYGSAAKATAADALAFGTNAQANVANSIALGANSVTAAAVGTSSATIGGVTYPFAGGSPVGVVSVGAPGQERQITNVAAGRISATSTDAINGSQLNATNNAINTLSTSTASNVASLSTGINSLSTGLSTTNSNVASLSTSTSTAINSLSTGLSTTNSNVNSLSTSTSTGIGSLSTGLSTTNSNVASLSTGVTNINNQLNQLSTTLNNNTTRAANNNGVAADLNGKGNDLPVVTAGSNSVAIGAGSNDGGRSNVVSVGSDTQQRQITNVAPGTQGTDAVNVNQLTQVQTTLSTALSGQQAQINSLGSQLQQTDQMAKQGIAAVGAMASIPQLDRDANFGMGVGTSTFLGQKAMAVNMQARITENLKASINGGFSGGQKVIGAGMLYQWK
>CP021067.1|AWG28810.1|1782702_1783368_+|hypothetical-protein
MNKLALALALSATALAACSTASGPTFSASELQPRDGVRTFQVDCHGLLSGPQTCMKAARKICGDEPVRAVDSARALRDKSDPATLVFQCGAAPAEAASAATPAPAAVIERVNLSGDALFATDHATLAPTARESLDRLLSERADRTYSQVTVTGFTDSVGSDDYNLALSKRRAEAVAAYLKAHGLKTDSMTVSGRGKADPVASNATPEGRASNRRVEIRLQH
>CP021067.1|AWG28811.1|1783758_1784904_+|hypothetical-protein
MTDINEAAAGGTRKQRPAVGISLFARDGQAIWENGIHQNIAFLAMMLKRSDRVGPVYFLNGGDANALPAGLELDGLDIPLVKPADVTHELDVVIEMGAQLPVEWLRHMKALGKKIAAFFCGHVYAGLCETPIFGKPSGHVFNGAPFDEVWLLPQYDKTAAPMLRTILRAPVHLMPHIWSPYFLERRVATLADEGATFGYQPGQRPWKLAMLEPNISVAKSCHYPMLACDAFYRARPDAVQHMFVVNSMHMKEHPTFVHFANSLDLVRQHKATFEPRLDLPGFMARHADAVVSHHWENGQNYLYYDVLYGGYPLIHNSTLIGDAGYYYPDFDSAAGGRALLEAWLHHDERLDDYRAKAGRLLQSVSIDNPANLDAFVSRLVA
>CP021067.1|AWG28812.1|1784918_1786073_+|hypothetical-protein
MSDSNARQAPGEGKRLVVGVSLFVRGAGQSLWENGIFQNCLLLILLLRQSPLVADAVMVNGGEQVADPQMMLGEWNVPLLSMDEALERCDVLIEMSAQFGADYLRAFRERGGKVVTMRVGNDYVIDIERAMFDKPSGFLFSGAPYDAVWTIPEFERSCLHYYQTGLRAPVTIVPHIWHPMLFDKARATLGAGLSFGYQPGKPRWRVTMFEPNICMVKTSIIPMLVTEEAYRAKPAFLEFVRVCNTIHLKEHPTFVHFAKSLDIVNHGITTFESRYAVYEFMAAYGDAVVSHTWENAQNYLYYELLYGDYPLIHNSPFLGKAGYFYPDFDCQAGGRALLQAFAEHDANLDAYREQSKHVLDSVSIYNPENVAAYTDAIATLYRDA
>CP021067.1|AWG29821.1|1786099_1786567_+|hypothetical-protein
MNARPTLTRAKWLIGCAAASLAIGAHAQAAGESADTLLRDSDAVFKQLDAGQYGAVWSDAAPFVKARFKQDQFTAQMQQARQSVGAVSHRGWAQVTRIRYERTTGMPDGLYANVDYATTLASGATMFEKLSFRLETDGRWHLTGYVPRQTQNAAQ
>CP021067.1|AWG28813.1|1786600_1787737_+|hypothetical-protein
MKLNVAITMNVQRDATQSIWYNGANQHCVYLYMLLKQSPLIGEVWLAHDNGITEYPQALMMDAFGDALRPLSAVVHQTDLLIEMNAFIDPSHTDVVRQRGGKCVSYRFGNDYVIAVETINFEKNDWRPNPHRVQFDEIWTNPQHMHTCAAYFQAVYRAPVIELPHIWSPYFIERSLDADPELKARFGYRNHGPAKRIAFFEPNLNVVKSAIVPMLAANACYVEHPELVEHVYMTNTFDKKENVAFKHLALGLEMVRDGKATADVRAPFVAWAAHHTDIVVSHHWENGLNYLLYDALYGNYPLVHNSPFLRDVGYYYPDFEIFDAARAIATAAQTHDARLDDYAAAARRCLHQVDTLAEHNVRAYSSQIQHLFAGRPLG
>CP021067.1|AWG28814.1|1787761_1789735_+|SAM-dependent-methyltransferase
MNQTVRNFVVIDSIHGPFVINRHCALQAEALIKTGRPHIQGELDTILQVIDQLPDGAIAVDGGANAGLVCVPLAHRLRERGGRVYAFEPQRTLFHALGGTVALNQLDNLHLLNMGLAAANGTMKVPDVDYGQDADFGQVSLVDTQASGGTPTPVVRLDSLGLPRLDFLKLDIEGMEIDALRGARRLIETHLPWCWIEYWKVGEAPIIDTFAGLDYTFYRIDGLNMLCVPNPRWDRQRLFITGEPLAAGSTAERGTDSATAAPTDADTPETNWNRALDHESRGEWGHAIDRWQRARGRGLDDDAIALQLASCYGFAGAPEAGLATLGHFGDPAALPDAARGRIQLARSALLLRAGRRDEAARATIDSENVLTAAQFGLPTERLYQGQPLHGKRLLILSYGGVGDQLQYARYLHALDALGCAGVTVVVPDALTGLLRETFPRIEFVGAHGAWVDTSQLAHDYWCSFLMLAALFGYAPTTEGMPAPYLMCPPAHAAAWRERVSHDGHAPGTRRIGLNWRGRDESDARFHRAASLRDFAPLARMHGYAAYCLNRDLSAQSEQSDLPVTFPHHAIGDFGDLAALMLAMDAVVTTCTAHIHLAGALGVPAVLLLSPKADARWETGSRTALYPGIRIVRAAHVGRWDDAIDRAMALVLGGFGKD
>CP021067.1|AWG29822.1|1789792_1790284_-|hypothetical-protein
MSAEAGRAARRVRVAVGTNRKGDVGMAGTKAGGGTGTQATDVRDLVALAELADMLLQLGAESTDAPIDVAPYLDGLTTVARRIQRMSPLDAGGRELAARHYYAGVIAGACGDESAIARGVSDSLVRQSGGAGRPAARCFVLLARMGRRHGRAFAAQSGDRVLV
>CP021067.1|AWG28815.1|1790280_1791084_-|Diguanylate-phosphodiesterase
MNAVEARQEANRKTNRDEIDLVFGAPDDHRDLASVRSFVESRLGFAHEPVCRADLSGGVLYQECLARLRWGERDALPPLVFLPRLEALGLMRWFDRLVVGRTIDALRADPAAVYGCNVAAASAVVDDAWLAIFRRLEREPSVAARLVIEITETGPLNPVAGRSFVNRFRQAGCRIAIDDFGVGFSALNNLVVGNPDIVKLDRSVLSLIKRNAIGRYQFRRLIAFAHEGARHVVVEGVESETDRQIIVDAGVAWAQGIRFSWRSPAAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP021067_1	1.1\|1777148\|31\|CP021067\|CRISPRCasFinder	1777148-1777178	31	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	979939-979969	8	0.742
CP021067_1	1.1\|1777148\|31\|CP021067\|CRISPRCasFinder	1777148-1777178	31	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	1076872-1076902	8	0.742
CP021067_1	1.1\|1777148\|31\|CP021067\|CRISPRCasFinder	1777148-1777178	31	LC425522	Uncultured phage DNA, contig: NODE620	1015-1045	10	0.677

1. spacer 1.1|1777148|31|CP021067|CRISPRCasFinder matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 8, identity: 0.742

aaacagctcggttgcgtcgctttcgacctcg	CRISPR spacer
agtcgtgccggtttcgccgctttcgacctcg	Protospacer
*. *.  .***** **.**************

2. spacer 1.1|1777148|31|CP021067|CRISPRCasFinder matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 8, identity: 0.742

aaacagctcggttgcgtcgctttcgacctcg	CRISPR spacer
agtcgtgccggtttcgccgctttcgacctcg	Protospacer
*. *.  .***** **.**************

3. spacer 1.1|1777148|31|CP021067|CRISPRCasFinder matches to LC425522 (Uncultured phage DNA, contig: NODE620) position: , mismatch: 10, identity: 0.677

aaacagctcggttgcgtcgctttcgacctcg	CRISPR spacer
gttggtctcgattgcgtcgcttttgacctga	Protospacer
.   . ****.************.***** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP021069

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

866220 : 879319

Bodo_saltans_virus(12.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWG31210.1\|866220_867420_+	tetracycline resistance MFS efflux pump	A0A2H4UVM2	Bodo_saltans_virus	5.9e-05	24.3
AWG31211.1\|867518_868574_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.2e-72	45.9
AWG31212.1\|868809_869562_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
AWG31213.1\|869573_870251_+	phosphoserine phosphatase	NA	NA	NA	NA
AWG31214.1\|870256_871813_+	poly(A) polymerase	H7BUW3	unidentified_phage	1.2e-23	30.8
AWG31215.1\|871848_872391_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AWG31216.1\|872387_873074_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	1.2e-07	26.4
AWG31217.1\|873117_873933_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	6.7e-37	33.7
AWG31218.1\|874055_875969_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.5e-55	36.9
AWG31219.1\|875973_877110_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	5.0e-22	26.9
AWG31220.1\|877366_879319_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.6e-148	49.8

DBSCAN-SWA_2

3122829 : 3196415

Burkholderia_phage(87.5%)

holin,portal,head,tail,protease,capsid,terminase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWG33130.1\|3122829_3124170_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
AWG33131.1\|3124225_3124855_+	hypothetical protein	NA	NA	NA	NA
AWG33132.1\|3124896_3126042_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
AWG33133.1\|3126289_3127627_+	Small GTP-binding protein domain	NA	NA	NA	NA
AWG33602.1\|3127768_3128008_+	RNA-binding protein Hfq	NA	NA	NA	NA
AWG33134.1\|3128065_3129253_+	GTPase HflX	NA	NA	NA	NA
AWG33135.1\|3129300_3130647_+\|protease	protease modulator HflK	NA	NA	NA	NA
AWG33136.1\|3130662_3131562_+\|protease	protease modulator HflC	NA	NA	NA	NA
AWG33137.1\|3131598_3131790_+	DUF2065 domain-containing protein	NA	NA	NA	NA
AWG33138.1\|3131902_3133051_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
AWG33139.1\|3133164_3134511_+	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	1.3e-69	36.1
AWG33140.1\|3134518_3135115_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AWG33141.1\|3135389_3137306_+	potassium transporter Kup	A7J6G4	Paramecium_bursaria_Chlorella_virus	3.7e-78	32.8
AWG33142.1\|3137395_3139720_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
AWG33143.1\|3139884_3140637_+	hypothetical protein	NA	NA	NA	NA
AWG33144.1\|3140713_3140929_+	hypothetical protein	NA	NA	NA	NA
AWG33145.1\|3140984_3143234_+	helicase	A0A127AW80	Bacillus_phage	2.2e-77	29.5
AWG33146.1\|3143355_3144180_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AWG33147.1\|3144221_3145430_+	pseudouridine synthase	NA	NA	NA	NA
AWG33603.1\|3145436_3146276_+	laccase	NA	NA	NA	NA
AWG33148.1\|3146631_3148497_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
AWG33149.1\|3148596_3149778_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
AWG33150.1\|3149912_3150653_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA
AWG33151.1\|3150772_3151339_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
AWG33152.1\|3151751_3152594_+	hypothetical protein	NA	NA	NA	NA
AWG33153.1\|3152706_3152961_-	hypothetical protein	NA	NA	NA	NA
AWG33154.1\|3153105_3153369_-	hypothetical protein	NA	NA	NA	NA
AWG33155.1\|3154094_3154736_+	hypothetical protein	NA	NA	NA	NA
AWG33156.1\|3154746_3155793_+	Appr-1-p processing protein	B0FIJ9	Escherichia_phage	4.8e-19	42.7
AWG33157.1\|3155842_3156130_-	hypothetical protein	Q3HQV5	Burkholderia_phage	1.1e-21	58.2
AWG33158.1\|3156146_3156380_-	hypothetical protein	NA	NA	NA	NA
AWG33159.1\|3156463_3157216_-	dinucleotide-utilizing protein	NA	NA	NA	NA
AWG33160.1\|3157200_3157581_-	hypothetical protein	NA	NA	NA	NA
AWG33161.1\|3157577_3158381_-	hypothetical protein	NA	NA	NA	NA
AWG33162.1\|3158385_3159096_-	hypothetical protein	NA	NA	NA	NA
AWG33163.1\|3159092_3160172_-	hypothetical protein	NA	NA	NA	NA
AWG33164.1\|3160350_3160833_-	hypothetical protein	NA	NA	NA	NA
AWG33165.1\|3160847_3161396_-	hypothetical protein	NA	NA	NA	NA
AWG33166.1\|3161417_3161708_-	hypothetical protein	Q546W6	Burkholderia_phage	2.0e-20	55.6
AWG33167.1\|3161711_3161918_-	hypothetical protein	C7BGF3	Burkholderia_phage	2.9e-21	80.9
AWG33168.1\|3162584_3163049_-	transcriptional regulator	NA	NA	NA	NA
AWG33604.1\|3163586_3164138_+	hypothetical protein	C7BGG0	Burkholderia_phage	4.8e-47	62.1
AWG33169.1\|3164164_3165532_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	6.2e-152	60.2
AWG33170.1\|3165570_3166542_+	hypothetical protein	C7BGG2	Burkholderia_phage	1.4e-68	44.0
AWG33171.1\|3166554_3166953_+	hypothetical protein	C7BGG3	Burkholderia_phage	4.1e-32	50.8
AWG33605.1\|3167088_3167457_+	phage protein	C7BGG5	Burkholderia_phage	6.1e-62	91.0
AWG33172.1\|3167652_3168156_+	hypothetical protein	C7BGG6	Burkholderia_phage	3.7e-86	91.0
AWG33606.1\|3168200_3169865_+\|terminase	terminase	C7BGG7	Burkholderia_phage	4.2e-296	89.2
AWG33173.1\|3169861_3171151_+\|portal	phage portal protein	C7BGG8	Burkholderia_phage	3.4e-216	85.1
AWG33174.1\|3171116_3171935_+\|protease	Protease subunit of ATP-dependent Clp proteases	C7BGG9	Burkholderia_phage	4.6e-102	88.8
AWG33175.1\|3172003_3173269_+\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	1.6e-223	93.1
AWG33176.1\|3173320_3173905_+	hypothetical protein	C7BGH1	Burkholderia_phage	8.9e-100	95.4
AWG33177.1\|3173915_3174242_+\|head,tail	head-tail adaptor protein	C7BGH2	Burkholderia_phage	6.3e-55	98.1
AWG33178.1\|3174234_3174657_+	hypothetical protein	C7BGH3	Burkholderia_phage	1.8e-65	95.0
AWG33179.1\|3174653_3174998_+	hypothetical protein	Q3HQT5	Burkholderia_phage	1.4e-39	74.6
AWG33180.1\|3175057_3175519_+\|tail	phage tail protein	Q4FAS7	Burkholderia_phage	6.9e-71	92.9
AWG33181.1\|3175547_3176015_+\|tail	phage tail protein	C7BGC7	Burkholderia_phage	7.9e-75	91.0
AWG33182.1\|3176011_3176290_+\|tail	phage tail protein	Q4FAS6	Burkholderia_phage	1.7e-40	92.4
AWG33183.1\|3176303_3180404_+\|tail	phage tail tape measure protein	C7BGC8	Burkholderia_phage	0.0e+00	94.1
AWG33184.1\|3180403_3180742_+\|tail	phage tail protein	C7BGC9	Burkholderia_phage	2.9e-58	95.5
AWG33185.1\|3180849_3182241_+	hypothetical protein	C7BGD0	Burkholderia_phage	4.7e-99	59.7
AWG33186.1\|3182245_3182929_+\|tail	phage minor tail protein L	C7BGD1	Burkholderia_phage	7.4e-122	91.6
AWG33187.1\|3182978_3183731_+\|tail	Phage tail assembly protein	C7BGD2	Burkholderia_phage	8.1e-146	95.6
AWG33188.1\|3183727_3184291_+\|tail	phage tail protein	C7BGD3	Burkholderia_phage	1.6e-93	97.9
AWG33189.1\|3184287_3188193_+\|tail	Phage-related protein, tail component	C7BGD4	Burkholderia_phage	0.0e+00	94.9
AWG33190.1\|3188192_3188501_+	hypothetical protein	C7BGD5	Burkholderia_phage	3.1e-35	66.7
AWG33191.1\|3188500_3189217_+	hypothetical protein	C7BGD6	Burkholderia_phage	2.1e-95	67.2
AWG33192.1\|3189273_3189558_+\|holin	holin	C7BGD7	Burkholderia_phage	1.0e-40	97.9
AWG33193.1\|3189560_3190010_+	peptidase M15	C7BGD8	Burkholderia_phage	1.1e-73	96.0
AWG33194.1\|3190006_3190489_+	hypothetical protein	C7BGD9	Burkholderia_phage	7.7e-57	75.0
AWG33195.1\|3190596_3191493_+	hypothetical protein	C7BGE2	Burkholderia_phage	1.6e-148	89.6
AWG33196.1\|3191594_3191996_-	hypothetical protein	NA	NA	NA	NA
AWG33197.1\|3192108_3192324_+	hypothetical protein	NA	NA	NA	NA
AWG33198.1\|3192338_3192830_-	hypothetical protein	C7BGE3	Burkholderia_phage	1.6e-70	76.5
AWG33199.1\|3192882_3193590_+	DUF159 family protein	Q8W6R8	Burkholderia_virus	2.9e-97	71.4
AWG33200.1\|3193606_3194722_-	hypothetical protein	NA	NA	NA	NA
AWG33607.1\|3194753_3196415_-	recombinase family protein	Q3HQV4	Burkholderia_phage	2.1e-202	65.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP021068

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

578311 : 584676

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWG30328.1\|578311_579097_+	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	1.4e-10	26.7
AWG30329.1\|579093_579813_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.1e-18	28.3
AWG30330.1\|579809_581207_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	3.7e-27	29.5
AWG30331.1\|581307_582204_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.7e-97	57.8
AWG30332.1\|582200_582779_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.0e-43	58.5
AWG30333.1\|582778_583663_+	dTDP-4-dehydrorhamnose 3,5-epimerase	K7QJU0	Escherichia_phage	1.4e-27	34.3
AWG30334.1\|583659_584676_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	8.0e-80	45.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP021067

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP021069

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP021068

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection