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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020930 Weissella cibaria strain M2 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
CP020928 Weissella cibaria strain M2 chromosome, complete genome 1 crisprs csa3,DEDDh,csa5gr11,DinG,csn2,cas2,cas1,cas9,cas3 0 2 4 0
CP020929 Weissella cibaria strain M2 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. CP020928
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020928_2 1493938-1494501 TypeII NA
8 spacers
csn2,cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP020928_2 2.1|1493974|30|CP020928|CRISPRCasFinder,CRT 1493974-1494003 30 NZ_CP010885 Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence 26677-26706 7 0.767
CP020928_2 2.1|1493974|30|CP020928|CRISPRCasFinder,CRT 1493974-1494003 30 NZ_CP007006 Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence 65111-65140 7 0.767
CP020928_2 2.6|1494304|30|CP020928|CRISPRCasFinder,CRT,PILER-CR 1494304-1494333 30 MG592454 Vibrio phage 1.079.O._10N.286.45.E9, partial genome 40252-40281 8 0.733
CP020928_2 2.1|1493974|30|CP020928|CRISPRCasFinder,CRT 1493974-1494003 30 CP051285 Salmonella phage ST-32, complete genome 39932-39961 9 0.7

1. spacer 2.1|1493974|30|CP020928|CRISPRCasFinder,CRT matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 7, identity: 0.767

aactgccattacttggctcctctcttgaga	CRISPR spacer
tactgcgattacttgactcctctcttctct	Protospacer
 ***** ********.**********    

2. spacer 2.1|1493974|30|CP020928|CRISPRCasFinder,CRT matches to NZ_CP007006 (Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence) position: , mismatch: 7, identity: 0.767

aactgccattacttggctcctctcttgaga	CRISPR spacer
tactgcgattacttgactcctctcttctct	Protospacer
 ***** ********.**********    

3. spacer 2.6|1494304|30|CP020928|CRISPRCasFinder,CRT,PILER-CR matches to MG592454 (Vibrio phage 1.079.O._10N.286.45.E9, partial genome) position: , mismatch: 8, identity: 0.733

aatagttgtgtgttattcatttcttgtact	CRISPR spacer
attatttgtgtgttattcattttttaactc	Protospacer
* ** *****************.**.  ..

4. spacer 2.1|1493974|30|CP020928|CRISPRCasFinder,CRT matches to CP051285 (Salmonella phage ST-32, complete genome) position: , mismatch: 9, identity: 0.7

aactgccattacttggctcctctcttgaga	CRISPR spacer
gtttgccattacttggctcccttctttttc	Protospacer
. .*****************..****    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 777760 : 795544 20 Lactococcus_phage(66.67%) NA NA
DBSCAN-SWA_2 999120 : 1026925 38 Lactococcus_phage(40.91%) NA NA
DBSCAN-SWA_3 1228673 : 1243292 15 Lactobacillus_phage(55.56%) NA NA
DBSCAN-SWA_4 1808349 : 1816991 9 Synechococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP020929
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 13788 : 30853 18 Lactococcus_phage(53.85%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage