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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020035 Vibrio parahaemolyticus strain 20130629002S01 chromosome II, complete sequence 1 crisprs DEDDh,WYL,csa3,cas3 0 0 2 0
CP020034 Vibrio parahaemolyticus strain 20130629002S01 chromosome I, complete sequence 0 crisprs DEDDh,WYL,DinG,cas3,csx1,csa3 0 0 4 0
CP020037 Vibrio parahaemolyticus strain 20130629002S01 plasmid pVPGX2, complete sequence 0 crisprs NA 0 0 2 0
CP020036 Vibrio parahaemolyticus strain 20130629002S01 plasmid pVPGX1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP020035
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020035_1 54224-54321 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 725026 : 769923 44 Shigella_phage(22.22%) transposase,protease NA
DBSCAN-SWA_2 783029 : 843937 50 Vibrio_phage(50.0%) transposase,integrase attL 823466:823480|attR 842331:842345
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP020034
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 559159 : 576339 15 uncultured_Mediterranean_phage(18.18%) tRNA NA
DBSCAN-SWA_2 1402425 : 1433269 44 Escherichia_phage(50.0%) transposase,integrase attL 1421540:1421554|attR 1434760:1434774
DBSCAN-SWA_3 1913081 : 1922488 13 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_4 2650745 : 2657447 7 Staphylococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP020037
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2662 : 23108 28 Aeromonas_phage(48.0%) tail NA
DBSCAN-SWA_2 29604 : 38011 18 Aeromonas_phage(50.0%) integrase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage