CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029164	Escherichia coli strain 104 chromosome, complete genome	4 crisprs	WYL,cas3,csa3,PD-DExK,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG	1	15	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029164_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029164_1

136157-136296

Orphan

Consensus_repeat	Method
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029164_1

>merge|CP029164|1|136157-136296|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGCTGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

>CP029164|1|1|136157-136296|CRISPRCasFinder
TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	GCACTGAACTCGTAGGCCTGATAAGACGCGACAGCGTCGCATCAGGCAAGGC
TGTTATTGTCGGATGCGACGTGAACGCCTTATCCGACCTACACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029164.1\|AWH67984.1\|127225_127990_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
CP029164.1\|AWH67981.1\|124367_125387_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
CP029164.1\|AWH67982.1\|125390_125954_-\|thermosensitive-gluconokinase	unknown	unknown	gnl\|CDD\|182097
CP029164.1\|AWH67999.1\|145791_146736_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
CP029164.1\|AWH67986.1\|129440_130439_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
CP029164.1\|AWH67983.1\|126170_127202_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
CP029164.1\|AWH67992.1\|136840_139696_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP029164.1\|AWH67991.1\|136397_136841_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
CP029164.1\|AWH67988.1\|132179_133262_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP029164.1\|AWH67996.1\|142380_143385_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
CP029164.1\|AWH67998.1\|144560_145781_+\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
CP029164.1\|AWH68000.1\|146746_147751_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
CP029164.1\|AWH67993.1\|139742_140930_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
CP029164.1\|AWH67990.1\|134628_136140_+\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP029164.1\|AWH67995.1\|141802_142219_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
CP029164.1\|AWH67985.1\|128054_129374_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
CP029164.1\|AWH67994.1\|141122_141626_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029164.1\|AWH67997.1\|143430_143883_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
CP029164.1\|AWH67987.1\|130516_132019_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
CP029164.1\|AWH67989.1\|133261_134362_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075

Protein	Function_ID	Function_description	E-value
CP029164.1\|AWH67984.1\|127225_127990_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
CP029164.1\|AWH67981.1\|124367_125387_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.56042e-169
CP029164.1\|AWH67982.1\|125390_125954_-\|thermosensitive-gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
CP029164.1\|AWH67999.1\|145791_146736_+\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
CP029164.1\|AWH67986.1\|129440_130439_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	4.28565e-108
CP029164.1\|AWH67983.1\|126170_127202_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
CP029164.1\|AWH67992.1\|136840_139696_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP029164.1\|AWH67991.1\|136397_136841_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
CP029164.1\|AWH67988.1\|132179_133262_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP029164.1\|AWH67996.1\|142380_143385_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
CP029164.1\|AWH67998.1\|144560_145781_+\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
CP029164.1\|AWH68000.1\|146746_147751_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
CP029164.1\|AWH67993.1\|139742_140930_-\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	2.83215e-106
CP029164.1\|AWH67990.1\|134628_136140_+\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP029164.1\|AWH67995.1\|141802_142219_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	8.18116e-69
CP029164.1\|AWH67985.1\|128054_129374_+\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP029164.1\|AWH67994.1\|141122_141626_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
CP029164.1\|AWH67997.1\|143430_143883_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.82284e-65
CP029164.1\|AWH67987.1\|130516_132019_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP029164.1\|AWH67989.1\|133261_134362_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0

>CP029164.1|AWH67990.1|134628_136140_+|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>CP029164.1|AWH67989.1|133261_134362_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>CP029164.1|AWH67988.1|132179_133262_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAAAAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>CP029164.1|AWH67987.1|130516_132019_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAEEGTSSEKLLARLKNIGVNDWQPHTNPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPTFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASIEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>CP029164.1|AWH67986.1|129440_130439_+|LacI-family-DNA-binding-transcriptional-regulator
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTIIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>CP029164.1|AWH67985.1|128054_129374_+|gluconate-permease
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>CP029164.1|AWH67984.1|127225_127990_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>CP029164.1|AWH67983.1|126170_127202_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSKLHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>CP029164.1|AWH67982.1|125390_125954_-|thermosensitive-gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>CP029164.1|AWH67981.1|124367_125387_+|NAD(P)-dependent-alcohol-dehydrogenase
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKTLAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>CP029164.1|AWH67991.1|136397_136841_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>CP029164.1|AWH67992.1|136840_139696_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>CP029164.1|AWH67993.1|139742_140930_-|DUF898-domain-containing-protein
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVNFSLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLNDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLMMMTMLGRSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>CP029164.1|AWH67994.1|141122_141626_+|N-acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>CP029164.1|AWH67995.1|141802_142219_-|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGIRH
>CP029164.1|AWH67996.1|142380_143385_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAELGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>CP029164.1|AWH67997.1|143430_143883_-|YhcH/YjgK/YiaL-family-protein
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKS
>CP029164.1|AWH67998.1|144560_145781_+|arginine-deiminase
MEKHYVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGIEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>CP029164.1|AWH67999.1|145791_146736_+|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPITTLDPFL
>CP029164.1|AWH68000.1|146746_147751_+|ornithine-carbamoyltransferase
MATSLKNRNFLKLLDYTPAEIQYLIDLAINLKAAKKSGNEKQTLVGKNIALIFEKSSTRTRCAFEVAAFDQGAQVTYIGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQNIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPDEALVTQCREIASVTGARITLTEDVEEGVYDVDFLYTDVWVSMGEPKEAWAERVSLMTPYQINQQVITATRNPEVKFMHCLPAFHNEHTTVGREIEMAYGLKGLEVTDEVFESAHSIVFDEAENRMHTIKAVMVATLGD

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Crispr_ID: CP029164_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029164_3

2002885-2003401

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCACGTCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCNCGNCAGCGGGGATAAACCG	CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

8 spacers

The CRISPR arrays of CP029164_3

>merge|CP029164|3|2002885-2003401|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCGACGTAACAAAACAACAGCAAAATATTATCGACGAGTTCCCCACGTCAGCGGGGATAAACCGGCTCCGCCGGTTTGATCTCCGGTTTGCGCTGTGAGTTCCCCACGTCAGCGGGGATAAACCGGCAATTAATTTAGTTCCAGATGCTGCGAAAGAGAGTTCCCCACGTCAGCGGGGATAAACCGTTGGTCACTCGTCAAAAGTCGAGACGGTCGAAGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCTAGGATAAATTAAAAGACAAAATTGCAGCAAGAGTTCCCCGCGGCAGCGGGGATAAACCGGAGCGACCAGTATCAAGATCGACAGGTTTTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGATCGATATGTACGTTAGCGAGGGGATCACGCAGAGTTCCCCGCACCAGCGGGGATAAACCA

>CP029164|3|1|2002885-2003157|PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCG	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAAGA
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA


>CP029164|3|3|2002885-2003401|CRISPRCasFinder
GAGTTCCCCACGTCAGCGGGGATAAACCG	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAAGA
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>CP029164|3|1|2002885-2003401|CRT
GAGTTCCCCACGTCAGCGGGGATAAACCG	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAAGA
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>CP029164|3|2|2003190-2003401|PILER-CR
	ACGTAACAAAACAACAGCAAAATATTATCGAC
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAAGA
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029164.1\|AWH69699.1\|2012640_2013216_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP029164.1\|AWH69689.1\|1997623_1999261_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP029164.1\|AWH69683.1\|1987180_1988521_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP029164.1\|AWH69697.1\|2010857_2011637_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP029164.1\|AWH69700.1\|2013232_2013493_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP029164.1\|AWH69687.1\|1994274_1996509_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP029164.1\|AWH69692.1\|2004038_2005517_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP029164.1\|AWH69688.1\|1996604_1997396_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP029164.1\|AWH69682.1\|1985826_1987179_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
CP029164.1\|AWH69691.1\|2001873_2002545_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP029164.1\|AWH69690.1\|1999347_2000646_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP029164.1\|AWH69694.1\|2007139_2007925_+\|KR-domain-containing-protein	unknown	unknown	gnl\|CDD\|187605
CP029164.1\|AWH69701.1\|2013483_2014755_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP029164.1\|AWH69685.1\|1990112_1992869_-\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|236848
CP029164.1\|AWH69686.1\|1992925_1994227_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP029164.1\|AWH69695.1\|2007994_2009449_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP029164.1\|AWH69684.1\|1988541_1989882_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP029164.1\|AWH69696.1\|2009542_2010880_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP029164.1\|AWH69693.1\|2005543_2006821_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP029164.1\|AWH69698.1\|2011633_2012494_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936

Protein	Function_ID	Function_description	E-value
CP029164.1\|AWH69699.1\|2012640_2013216_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
CP029164.1\|AWH69689.1\|1997623_1999261_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP029164.1\|AWH69683.1\|1987180_1988521_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP029164.1\|AWH69697.1\|2010857_2011637_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.49488e-64
CP029164.1\|AWH69700.1\|2013232_2013493_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
CP029164.1\|AWH69687.1\|1994274_1996509_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP029164.1\|AWH69692.1\|2004038_2005517_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.96639e-109
CP029164.1\|AWH69688.1\|1996604_1997396_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.42418e-159
CP029164.1\|AWH69682.1\|1985826_1987179_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.41821e-161
CP029164.1\|AWH69691.1\|2001873_2002545_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP029164.1\|AWH69690.1\|1999347_2000646_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP029164.1\|AWH69694.1\|2007139_2007925_+\|KR-domain-containing-protein	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139
CP029164.1\|AWH69701.1\|2013483_2014755_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.50386e-125
CP029164.1\|AWH69685.1\|1990112_1992869_-\|signal-transduction-histidine-kinase	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP029164.1\|AWH69686.1\|1992925_1994227_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP029164.1\|AWH69695.1\|2007994_2009449_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16286e-81
CP029164.1\|AWH69684.1\|1988541_1989882_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP029164.1\|AWH69696.1\|2009542_2010880_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.78259e-51
CP029164.1\|AWH69693.1\|2005543_2006821_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.00463e-29
CP029164.1\|AWH69698.1\|2011633_2012494_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.86737e-87

>CP029164.1|AWH69691.1|2001873_2002545_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP029164.1|AWH69690.1|1999347_2000646_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP029164.1|AWH69689.1|1997623_1999261_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP029164.1|AWH69688.1|1996604_1997396_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEQIKTEERAQKAQHSALDDIPSSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQVVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP029164.1|AWH69687.1|1994274_1996509_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP029164.1|AWH69686.1|1992925_1994227_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP029164.1|AWH69685.1|1990112_1992869_-|signal-transduction-histidine-kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>CP029164.1|AWH69684.1|1988541_1989882_+|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDKCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPLEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>CP029164.1|AWH69683.1|1987180_1988521_+|glucarate-dehydratase
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGEVIYQTLVKAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAITVLGYLFYIGDRTKTDLPYLENTSGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>CP029164.1|AWH69682.1|1985826_1987179_+|MFS-transporter
MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQKELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ
>CP029164.1|AWH69692.1|2004038_2005517_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFASHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDTAVMEKFNIPRQMLFDVQMPGTVLGHITRQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP029164.1|AWH69693.1|2005543_2006821_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>CP029164.1|AWH69694.1|2007139_2007925_+|KR-domain-containing-protein
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>CP029164.1|AWH69695.1|2007994_2009449_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYVLEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP029164.1|AWH69696.1|2009542_2010880_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFIGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP029164.1|AWH69697.1|2010857_2011637_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVVLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>CP029164.1|AWH69698.1|2011633_2012494_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNITIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGALKNATLPSGMQQLNIVPGAPPDWLISVENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLVEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
>CP029164.1|AWH69699.1|2012640_2013216_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP029164.1|AWH69700.1|2013232_2013493_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP029164.1|AWH69701.1|2013483_2014755_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLVERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGTQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP029164_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029164_4

2029103-2030107

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

16 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of CP029164_4

>merge|CP029164|4|2029103-2030107|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCATTGAAAACATTGCCTTTATTTTATTTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCCGCCGCTGGGCACTTCCTTCCCGTGAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGACGGTGGGAATATAGAAAATCCGTCCACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATACTCTTTTCATCGACTAAGGAGGGGAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAACGCAGCATCCAGGAAGCTGTTTCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATCGGTGAAGAGGTCCGCGAAATACTCACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATAGTTGATTCAGCCGCGCCAGCGAATGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCCGCCGCGAATTTACACACGATTCAATACGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTGGTGCGCGACGGCTGGCTAACAAAACGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGGCTGCGCTGGCCGTTGCAGCAGTTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTAAACGCCCCGTCGCCATTAATTTCGGGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGATGAGCAAATAACGTCGTTTCCTAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCCGTGCCAGTGATCCTCATACGGCCTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAAGAACGGCGTAAACGACGGCAGCATGCTGTTCCCCGCGCCAGCGGGGATAAACCGGTGATGATTCAGAGCAGACATTAGCCCGCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP029164|4|3|2029103-2030107|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGACGGTGGGAATATAGAAAATCCGTCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACTCTTTTCATCGACTAAGGAGGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACGCAGCATCCAGGAAGCTGTTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAGTTGATTCAGCCGCGCCAGCGAATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGGTGCGCGACGGCTGGCTAACAAAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAAACGCCCCGTCGCCATTAATTTCGGGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
CTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP029164|4|4|2029103-2030107|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGACGGTGGGAATATAGAAAATCCGTCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACTCTTTTCATCGACTAAGGAGGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACGCAGCATCCAGGAAGCTGTTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAGTTGATTCAGCCGCGCCAGCGAATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGGTGCGCGACGGCTGGCTAACAAAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAAACGCCCCGTCGCCATTAATTTCGGGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
CTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP029164|4|2|2029103-2030107|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGACGGTGGGAATATAGAAAATCCGTCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACTCTTTTCATCGACTAAGGAGGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACGCAGCATCCAGGAAGCTGTTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAGTTGATTCAGCCGCGCCAGCGAATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGGTGCGCGACGGCTGGCTAACAAAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAAACGCCCCGTCGCCATTAATTTCGGGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
CTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029164.1\|AWH69708.1\|2024800_2025337_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP029164.1\|AWH69717.1\|2033814_2034420_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP029164.1\|AWH69711.1\|2027145_2027796_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP029164.1\|AWH69723.1\|2037532_2038294_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP029164.1\|AWH69713.1\|2028712_2029006_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP029164.1\|AWH69721.1\|2036026_2036506_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP029164.1\|AWH69722.1\|2036502_2037552_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP029164.1\|AWH69706.1\|2020096_2020249_+\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP029164.1\|AWH69710.1\|2026417_2027164_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP029164.1\|AWH69719.1\|2034986_2035298_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP029164.1\|AWH69715.1\|2031477_2032386_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP029164.1\|AWH69704.1\|2017312_2019025_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP029164.1\|AWH69720.1\|2035316_2036027_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP029164.1\|AWH69716.1\|2032387_2033815_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP029164.1\|AWH69709.1\|2025351_2026407_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP029164.1\|AWH69707.1\|2020486_2023144_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP029164.1\|AWH69712.1\|2027792_2028716_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP029164.1\|AWH69718.1\|2034469_2034793_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP029164.1\|AWH69705.1\|2019098_2019833_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP029164.1\|AWH69714.1\|2030188_2031226_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299

Protein	Function_ID	Function_description	E-value
CP029164.1\|AWH69708.1\|2024800_2025337_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.62446e-29
CP029164.1\|AWH69717.1\|2033814_2034420_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.12214e-148
CP029164.1\|AWH69711.1\|2027145_2027796_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.43159e-91
CP029164.1\|AWH69723.1\|2037532_2038294_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP029164.1\|AWH69713.1\|2028712_2029006_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.0872e-65
CP029164.1\|AWH69721.1\|2036026_2036506_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.30213e-104
CP029164.1\|AWH69722.1\|2036502_2037552_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP029164.1\|AWH69706.1\|2020096_2020249_+\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP029164.1\|AWH69710.1\|2026417_2027164_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
CP029164.1\|AWH69719.1\|2034986_2035298_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.23098e-61
CP029164.1\|AWH69715.1\|2031477_2032386_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP029164.1\|AWH69704.1\|2017312_2019025_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP029164.1\|AWH69720.1\|2035316_2036027_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.47016e-121
CP029164.1\|AWH69716.1\|2032387_2033815_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP029164.1\|AWH69709.1\|2025351_2026407_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.45361e-154
CP029164.1\|AWH69707.1\|2020486_2023144_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.16333e-180
CP029164.1\|AWH69712.1\|2027792_2028716_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
CP029164.1\|AWH69718.1\|2034469_2034793_+\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP029164.1\|AWH69705.1\|2019098_2019833_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.40583e-137
CP029164.1\|AWH69714.1\|2030188_2031226_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0

>CP029164.1|AWH69713.1|2028712_2029006_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP029164.1|AWH69712.1|2027792_2028716_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP029164.1|AWH69711.1|2027145_2027796_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP029164.1|AWH69710.1|2026417_2027164_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP029164.1|AWH69709.1|2025351_2026407_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTLQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP029164.1|AWH69708.1|2024800_2025337_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIESQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDELLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP029164.1|AWH69707.1|2020486_2023144_+|CRISPR-associated-helicase/endonuclease-Cas3
MTFFYFWGKTRRGEKDGGEDYHLLCWHSLDVAAMGYLMVKSNCFGLAGYFRQLGFADTELAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDELDNFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRYFPRVAQAMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPLLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGLLKRDGKDERSPPEFLILAPVWDDSPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVAMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>CP029164.1|AWH69706.1|2020096_2020249_+|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP029164.1|AWH69705.1|2019098_2019833_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP029164.1|AWH69704.1|2017312_2019025_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKVAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>CP029164.1|AWH69714.1|2030188_2031226_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP029164.1|AWH69715.1|2031477_2032386_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP029164.1|AWH69716.1|2032387_2033815_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFSGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP029164.1|AWH69717.1|2033814_2034420_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTPQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP029164.1|AWH69718.1|2034469_2034793_+|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP029164.1|AWH69719.1|2034986_2035298_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNNDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP029164.1|AWH69720.1|2035316_2036027_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGEERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAETGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP029164.1|AWH69721.1|2036026_2036506_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP029164.1|AWH69722.1|2036502_2037552_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVMEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAEETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP029164.1|AWH69723.1|2037532_2038294_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP029164_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029164_5

3135822-3135945

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029164_5

>merge|CP029164|5|3135822-3135945|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP029164|5|5|3135822-3135945|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP029164.1\|AWH70709.1\|3127909_3128536_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|182135
CP029164.1\|AWH70715.1\|3133645_3135256_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
CP029164.1\|AWH70717.1\|3136259_3137516_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
CP029164.1\|AWH70724.1\|3144530_3144755_-\|hypothetical-protein	unknown	unknown	unknown
CP029164.1\|AWH70722.1\|3142588_3143521_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP029164.1\|AWH70708.1\|3127244_3127454_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP029164.1\|AWH70725.1\|3144841_3144931_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP029164.1\|AWH70726.1\|3145096_3146266_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP029164.1\|AWH70723.1\|3143517_3144543_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP029164.1\|AWH70721.1\|3141264_3142476_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
CP029164.1\|AWH70712.1\|3131373_3132042_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
CP029164.1\|AWH70707.1\|3125275_3126688_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
CP029164.1\|AWH70718.1\|3137556_3138930_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP029164.1\|AWH70714.1\|3132827_3133640_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP029164.1\|AWH70720.1\|3139825_3140974_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP029164.1\|AWH70710.1\|3128556_3130659_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP029164.1\|AWH70716.1\|3135381_3135687_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP029164.1\|AWH70719.1\|3139144_3139786_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP029164.1\|AWH70713.1\|3132038_3132824_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
CP029164.1\|AWH70711.1\|3130662_3131310_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182160

Protein	Function_ID	Function_description	E-value
CP029164.1\|AWH70709.1\|3127909_3128536_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	7.7474e-138
CP029164.1\|AWH70715.1\|3133645_3135256_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP029164.1\|AWH70717.1\|3136259_3137516_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP029164.1\|AWH70722.1\|3142588_3143521_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP029164.1\|AWH70708.1\|3127244_3127454_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP029164.1\|AWH70726.1\|3145096_3146266_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	9.34269e-98
CP029164.1\|AWH70723.1\|3143517_3144543_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP029164.1\|AWH70721.1\|3141264_3142476_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP029164.1\|AWH70712.1\|3131373_3132042_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.72056e-77
CP029164.1\|AWH70707.1\|3125275_3126688_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP029164.1\|AWH70718.1\|3137556_3138930_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP029164.1\|AWH70714.1\|3132827_3133640_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.03394e-173
CP029164.1\|AWH70720.1\|3139825_3140974_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP029164.1\|AWH70710.1\|3128556_3130659_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP029164.1\|AWH70716.1\|3135381_3135687_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	5.59739e-64
CP029164.1\|AWH70719.1\|3139144_3139786_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.68379e-123
CP029164.1\|AWH70713.1\|3132038_3132824_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	1.75608e-161
CP029164.1\|AWH70711.1\|3130662_3131310_+\|hypothetical-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.65892e-122

>CP029164.1|AWH70716.1|3135381_3135687_-|monooxygenase
MATLLQLHFAFNGPFGDAMVEQLEPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP029164.1|AWH70715.1|3133645_3135256_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAIAQAVVKPASRARRRLSFNQM
>CP029164.1|AWH70714.1|3132827_3133640_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGEDSTIVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP029164.1|AWH70713.1|3132038_3132824_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPLFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSANDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATTVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP029164.1|AWH70712.1|3131373_3132042_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTMQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP029164.1|AWH70711.1|3130662_3131310_+|hypothetical-protein
MGEMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDHADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDIAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP029164.1|AWH70710.1|3128556_3130659_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLNIKDDKVSLEKADLLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRKTLQRLGLEDIAADLAAHNLLPA
>CP029164.1|AWH70709.1|3127909_3128536_+|4Fe-4S-dicluster-domain-containing-protein
MTPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNLNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP029164.1|AWH70708.1|3127244_3127454_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP029164.1|AWH70707.1|3125275_3126688_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP029164.1|AWH70717.1|3136259_3137516_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITDAATQVHLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP029164.1|AWH70718.1|3137556_3138930_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>CP029164.1|AWH70719.1|3139144_3139786_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLEGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP029164.1|AWH70720.1|3139825_3140974_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP029164.1|AWH70721.1|3141264_3142476_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>CP029164.1|AWH70722.1|3142588_3143521_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP029164.1|AWH70723.1|3143517_3144543_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP029164.1|AWH70724.1|3144530_3144755_-|hypothetical-protein
MISVFTTSPFRQDRPKFHAYTICVLAIDPFLTLRVVFPAYRNTFVVRKVCKGKRLPCDFAGAEVRVWSEMEWQQ
>CP029164.1|AWH70725.1|3144841_3144931_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP029164.1|AWH70726.1|3145096_3146266_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029164_2	2.1\|917746\|59\|CP029164\|CRISPRCasFinder	917746-917804	59	CP029164.1	1712076-1712134	2	0.966

1. spacer 2.1|917746|59|CP029164|CRISPRCasFinder matches to position: 1712076-1712134, mismatch: 2, identity: 0.966

gaaggcagagggagacagtctgcgcggtgagataggcggtgtatacagagatgcccgtg	CRISPR spacer
gaaggcagagggagacagtctgcgtggtgagataggtggtgtatacagagatgcccgtg	Protospacer
************************.***********.**********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
CP029164_6	6.1\|3774268\|40\|CP029164\|CRISPRCasFinder	3774268-3774307	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP032392	Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence	28190-28221	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP022965	Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence	29440-29471	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NC_007208	Salmonella enterica OU7025 plasmid pOU1113, complete sequence	19749-19780	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_HG970001	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence	38393-38424	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP032386	Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence	3653-3684	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP032388	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence	42554-42585	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP030208	Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence	4890-4921	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP032450	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence	68762-68793	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NC_011204	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence	31020-31051	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NC_019106	Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence	75580-75611	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NC_019112	Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence	20322-20353	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP012348	Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence	42630-42661	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP019180	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence	59477-59508	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP032394	Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence	17037-17068	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NC_010422	Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence	19784-19815	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP032381	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence	47366-47397	2	0.938
CP029164_4	4.12\|2029803\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029803-2029834	32	NZ_CP032447	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence	58031-58062	2	0.938
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
CP029164_4	4.16\|2030047\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2030047-2030078	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
CP029164_5	5.1\|3135865\|38\|CP029164\|CRISPRCasFinder	3135865-3135902	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	27735-27766	6	0.812
CP029164_4	4.5\|2029376\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029376-2029407	32	NZ_CP015205	Rhodococcus sp. 008 plasmid pR8C2, complete sequence	47221-47252	7	0.781
CP029164_4	4.5\|2029376\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029376-2029407	32	NZ_CP025960	Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence	25136-25167	7	0.781
CP029164_3	3.1\|2002914\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2002914-2002945	32	MK448716	Streptococcus phage Javan249, complete genome	37558-37589	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_LT904880	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3	100861-100892	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	32455-32486	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP012254	Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence	90639-90670	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029647	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence	24048-24079	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	2158-2189	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	69550-69581	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029859	Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence	33422-33453	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029847	Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence	64890-64921	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029916	Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence	3001-3032	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029893	Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence	30210-30241	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029876	Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence	21803-21834	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029884	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence	5429-5460	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029961	Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence	76887-76918	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029849	Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence	9632-9663	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029857	Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence	17697-17728	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029929	Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence	73527-73558	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029865	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence	87633-87664	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	32810-32841	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029905	Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence	30728-30759	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029851	Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence	44207-44238	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	17468-17499	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029889	Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence	17968-17999	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029891	Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence	18575-18606	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029898	Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence	21136-21167	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029951	Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence	47286-47317	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029867	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence	33258-33289	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029901	Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence	32901-32932	8	0.75
CP029164_3	3.5\|2003158\|32\|CP029164\|CRISPRCasFinder,CRT	2003158-2003189	32	NZ_CP029921	Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence	100446-100477	8	0.75
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	70246-70277	8	0.75
CP029164_4	4.10\|2029681\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029681-2029712	32	NC_009717	Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence	288380-288411	8	0.75
CP029164_4	4.10\|2029681\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029681-2029712	32	NZ_CP010657	Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence	57627-57658	8	0.75
CP029164_4	4.13\|2029864\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029864-2029895	32	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	173595-173626	8	0.75
CP029164_3	3.1\|2002914\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2002914-2002945	32	NZ_CP044347	Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence	121862-121893	9	0.719
CP029164_3	3.1\|2002914\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2002914-2002945	32	NZ_CP032533	Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence	17401-17432	9	0.719
CP029164_3	3.6\|2003219\|32\|CP029164\|CRISPRCasFinder,CRT,PILER-CR	2003219-2003250	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
CP029164_3	3.6\|2003219\|32\|CP029164\|CRISPRCasFinder,CRT,PILER-CR	2003219-2003250	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
CP029164_3	3.7\|2003280\|32\|CP029164\|CRISPRCasFinder,CRT,PILER-CR	2003280-2003311	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	100759-100790	9	0.719
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	48192-48223	9	0.719
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	248214-248245	9	0.719
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	140326-140357	9	0.719
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP017110	Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence	20889-20920	9	0.719
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	45232-45263	9	0.719
CP029164_4	4.10\|2029681\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029681-2029712	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	418665-418696	9	0.719
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	10	0.808
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	10	0.808
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	10	0.808
CP029164_3	3.1\|2002914\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2002914-2002945	32	NZ_CP045561	Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence	141094-141125	10	0.688
CP029164_3	3.1\|2002914\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2002914-2002945	32	NZ_CP014478	Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence	140150-140181	10	0.688
CP029164_3	3.8\|2003341\|32\|CP029164\|CRISPRCasFinder,CRT,PILER-CR	2003341-2003372	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NC_018511	Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence	60-91	10	0.688
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NC_001446	Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence	4548-4579	10	0.688
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP009345	Bacillus thuringiensis HD1002 plasmid 6, complete sequence	1165-1196	10	0.688
CP029164_4	4.1\|2029132\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029132-2029163	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	105460-105491	10	0.688
CP029164_4	4.6\|2029437\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029437-2029468	32	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	166221-166252	10	0.688
CP029164_4	4.6\|2029437\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029437-2029468	32	NZ_CP014580	Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence	2849-2880	10	0.688
CP029164_4	4.10\|2029681\|32\|CP029164\|PILER-CR,CRISPRCasFinder,CRT	2029681-2029712	32	NZ_CP048816	Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed	34863-34894	10	0.688
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4115-4166	11	0.788
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4114-4165	11	0.788
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4114-4165	11	0.788
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4114-4165	11	0.788
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	152-203	11	0.788
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	44-95	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	43-94	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18332-18383	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	43-94	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	43-94	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7393-7444	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84217-84268	12	0.769
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3373-3424	13	0.75
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3372-3423	13	0.75
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15000-15051	13	0.75
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3372-3423	13	0.75
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3372-3423	13	0.75
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	70-121	14	0.731
CP029164_1	1.1\|136201\|52\|CP029164\|CRISPRCasFinder	136201-136252	52	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30159-30210	14	0.731

1. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

2. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

3. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

4. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

5. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 6.1|3774268|40|CP029164|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

26. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032392 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

27. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022965 (Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

28. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_007208 (Salmonella enterica OU7025 plasmid pOU1113, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

29. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG970001 (Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

30. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032386 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

31. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032388 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

32. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030208 (Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

33. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032450 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

34. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_011204 (Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

35. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_019106 (Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

36. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_019112 (Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

37. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012348 (Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

38. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019180 (Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

39. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032394 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

40. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_010422 (Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

41. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032381 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

42. spacer 4.12|2029803|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032447 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

43. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

44. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

45. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

46. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

47. spacer 4.16|2030047|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

48. spacer 5.1|3135865|38|CP029164|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

49. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cattgaa-aacattgcctttattttattttttg	CRISPR spacer
-attaaatcacattccctctattttattttttc	Protospacer
 ***.**  ***** ***.*************

50. spacer 4.5|2029376|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015205 (Rhodococcus sp. 008 plasmid pR8C2, complete sequence) position: , mismatch: 7, identity: 0.781

caataacgcagcatccaggaagctgtttccgc	CRISPR spacer
cgcgagcgcagcatcgaagaagctgtttccac	Protospacer
*.  *.********* *.************.*

51. spacer 4.5|2029376|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025960 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence) position: , mismatch: 7, identity: 0.781

caataacgcagcatccaggaagctgtttccgc	CRISPR spacer
cgcgagcgcagcatcgaagaagctgtttccac	Protospacer
*.  *.********* *.************.*

52. spacer 3.1|2002914|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to MK448716 (Streptococcus phage Javan249, complete genome) position: , mismatch: 8, identity: 0.75

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taataacaaaacgacagcaaaagattatagtt	Protospacer
  .*********.********* ***** * .

53. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

54. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

55. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttatca	Protospacer
******** *****.********  **  .*.

56. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

57. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

58. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

59. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

60. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

61. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

62. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

63. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

64. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

65. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

66. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

67. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

68. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

69. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

70. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

71. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

72. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

73. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

74. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

75. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

76. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

77. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

78. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

79. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

80. spacer 3.5|2003158|32|CP029164|CRISPRCasFinder,CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

81. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 8, identity: 0.75

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgctaaaacattggctttatttaatttttta	Protospacer
.  . ********* ******** *******.

82. spacer 4.10|2029681|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_009717 (Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence) position: , mismatch: 8, identity: 0.75

cgtggctgcgctggccgttgcagcagtttgat	CRISPR spacer
cctggccgcgcttgccgttgcagcaggaccgt	Protospacer
* ****.***** *************  . .*

83. spacer 4.10|2029681|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010657 (Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence) position: , mismatch: 8, identity: 0.75

cgtggctgcgctggccgttgcagcagtttgat--	CRISPR spacer
tgtggcggcgctggcagttgcagcg--ctggttc	Protospacer
.***** ******** ********.  .**.*

84. spacer 4.13|2029864|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccgccgtgccagtgatcctcatacggcctgtt	CRISPR spacer
cggtgcagccagtgatcgtcatacagcctgtg	Protospacer
* *.   ********** ******.******

85. spacer 3.1|2002914|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044347 (Escherichia coli strain P225M plasmid pP225M-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taagaacaaaacaagagcgaaatattatgcat	Protospacer
  . ********** ***.*********  *.

86. spacer 3.1|2002914|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 9, identity: 0.719

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
atgtaacaaaaaaacagtaaaatatggtgaga	Protospacer
*.********* *****.******* .* ..

87. spacer 3.6|2003219|32|CP029164|CRISPRCasFinder,CRT,PILER-CR matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

88. spacer 3.6|2003219|32|CP029164|CRISPRCasFinder,CRT,PILER-CR matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

89. spacer 3.7|2003280|32|CP029164|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gagcgaccagtatcaagatcgacaggttttgc	CRISPR spacer
gagcgaccagcagcaagatcgaccagacctca	Protospacer
**********.* ********** .* ..*

90. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

91. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

92. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

93. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

94. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017110 (Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

95. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
aaaaaagaacattgtatttattttatttttaa	Protospacer
 *  .*.*******. ************** .

96. spacer 4.10|2029681|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cgtggctgcgctggccgttgcagcagtttgat	CRISPR spacer
ggtggcggcgctggccgctgcagcggcgggca	Protospacer
 ***** **********.******.*.  *

97. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
acgggcgactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccga	Protospacer
.*.   .*********************** *****************  *

98. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 10, identity: 0.808

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggtaacg-gtttgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
 *.* .* ..*.*************************************  *

99. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.808

--gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
tggcaacgg--ctgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
  *** .*.  ..*************************************  *

100. spacer 3.1|2002914|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045561 (Acinetobacter nosocomialis strain AC1530 plasmid pAC1530, complete sequence) position: , mismatch: 10, identity: 0.688

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taataaaaaaacaacagcaaaattttgaaaat	Protospacer
  .*** **************** **.  .*.

101. spacer 3.1|2002914|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014478 (Acinetobacter pittii strain AP_882 plasmid pNDM-AP_882, complete sequence) position: , mismatch: 10, identity: 0.688

acgtaacaaaacaacagcaaaatattatcgac	CRISPR spacer
taataaaaaaacaacagcaaaattttgaaaat	Protospacer
  .*** **************** **.  .*.

102. spacer 3.8|2003341|32|CP029164|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

atcgatatgtacgttagcgaggggatcacgca	CRISPR spacer
ggcgatatttacgttagcgacgggactgacct	Protospacer
. ****** *********** ****...  *

103. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_018511 (Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

104. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NC_001446 (Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

105. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009345 (Bacillus thuringiensis HD1002 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

106. spacer 4.1|2029132|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
accttaaaacatttcctttgttttatttagat	Protospacer
  .* ******** *****.********

107. spacer 4.6|2029437|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatcggtgaagaggtccgcgaaatactcact	CRISPR spacer
taatcggtgacgacgtccgcgaaatcggagat	Protospacer
..******** ** ***********    . *

108. spacer 4.6|2029437|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatcggtgaagaggtccgcgaaatactcact	CRISPR spacer
taatcggtgacgacgtccgcgaaatcggagat	Protospacer
..******** ** ***********    . *

109. spacer 4.10|2029681|32|CP029164|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048816 (Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed) position: , mismatch: 10, identity: 0.688

cgtggctgcgctggccgttgcagcagtttgat	CRISPR spacer
cgtggctgcgctggccgtggccgcttgccagg	Protospacer
****************** ** **   ....

110. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

111. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

112. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

113. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************

114. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gctcgggtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaa	Protospacer
** * *. ** ******************* ****************   .

115. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

116. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

117. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

118. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

119. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

120. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

121. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

122. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************

123. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  .

124. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

125. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************

126. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

127. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

128. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

129. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

130. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************

131. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggttcaggtccgtaggcatgataagacgcgtcagcgtcgcatcaggcatcgg	Protospacer
*  .......******* ************ *****************  *

132. spacer 1.1|136201|52|CP029164|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gggtgcagattgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
* ..  *. *.****** ************ *****************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

108496 : 123827

Acinetobacter_phage(25.0%)

transposase,holin,integrase

attL 103956:103970|attR 128728:128742

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
103956:103970	attL	NA	NA	NA	NA
AWH67968.1\|108496_109652_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.6e-68	45.1
AWH67969.1\|109800_111804_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	7.5e-21	25.9
AWH67970.1\|111748_111907_+\|holin	choline transporter	NA	NA	NA	NA
AWH67971.1\|113694_113952_+	hypothetical protein	NA	NA	NA	NA
AWH67972.1\|114004_114130_-	hypothetical protein	NA	NA	NA	NA
AWH72402.1\|114172_115291_-	oxidoreductase	NA	NA	NA	NA
AWH67973.1\|115302_116520_-	MFS transporter	NA	NA	NA	NA
AWH67974.1\|117146_118475_+\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
AWH67975.1\|118502_118646_-	hypothetical protein	NA	NA	NA	NA
AWH67976.1\|119349_119544_-	hypothetical protein	NA	NA	NA	NA
AWH67977.1\|119559_119790_+	hypothetical protein	NA	NA	NA	NA
AWH67978.1\|119678_120146_+	hypothetical protein	NA	NA	NA	NA
AWH67979.1\|121190_122463_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
AWH72403.1\|122636_123827_-\|integrase	integrase	B7SYF8	Stenotrophomonas_phage	9.4e-72	40.1
128728:128742	attR	NA	NA	NA	NA

DBSCAN-SWA_2

355346 : 412633

Shigella_phage(36.67%)

portal,tRNA,plate,protease,terminase,holin,tail,integrase,lysis,head,capsid

attL 349726:349741|attR 384062:384077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
349726:349741	attL	NA	NA	NA	NA
AWH68197.1\|355346_355493_-\|integrase	integrase	NA	NA	NA	NA
AWH68198.1\|355451_355733_+	hypothetical protein	NA	NA	NA	NA
AWH68199.1\|355831_356368_-	ssDNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	1.1e-56	78.7
AWH68200.1\|356622_359445_+	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	56.1
AWH68201.1\|359479_359836_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
AWH68202.1\|359839_360256_-	thiamine phosphate synthase	NA	NA	NA	NA
AWH68203.1\|360366_361080_-	class B acid phosphatase	NA	NA	NA	NA
AWH68204.1\|361126_361306_+	hypothetical protein	NA	NA	NA	NA
AWH68205.1\|361442_361985_+	hypothetical protein	NA	NA	NA	NA
AWH68206.1\|362206_363400_-	aromatic amino acid transaminase	NA	NA	NA	NA
AWH68207.1\|363652_364732_-	alanine racemase biosynthetic	A0A0P0YM39	Yellowstone_lake_mimivirus	5.2e-29	27.9
AWH68208.1\|364784_366200_-	replicative DNA helicase	O80281	Escherichia_phage	4.8e-200	78.3
AWH68209.1\|366282_367266_+	quinone oxidoreductase	NA	NA	NA	NA
AWH68210.1\|367431_367674_-	envelope stress response protein PspG	NA	NA	NA	NA
AWH68211.1\|367807_368845_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AWH68212.1\|368932_370030_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	3.3e-212	99.5
AWH68213.1\|370091_370340_+	damage-inducible protein DinI	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
AWH68214.1\|370443_370998_-	DNA-invertase	A0A1S6L009	Salmonella_phage	4.8e-87	87.8
AWH68215.1\|371027_371546_+\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	5.2e-51	57.5
AWH68216.1\|371545_372148_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.0e-98	91.0
AWH68217.1\|372119_372539_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.7e-36	55.8
AWH68218.1\|372542_373193_-	hypothetical protein	U5P0I1	Shigella_phage	1.1e-63	64.2
AWH68219.1\|373196_373781_-	DUF2313 domain-containing protein	O22003	Shigella_phage	2.4e-113	99.5
AWH68220.1\|373771_374830_-\|plate	phage baseplate protein	M1FQW3	Enterobacteria_phage	1.4e-199	98.9
AWH68221.1\|374816_375245_-\|tail	phage tail protein	U5P0R9	Shigella_phage	2.3e-81	100.0
AWH68222.1\|375241_375790_-\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	2.5e-96	98.4
AWH68223.1\|375789_376869_-\|plate	baseplate protein	Q8SBG7	Shigella_phage	5.3e-207	99.7
AWH68224.1\|376865_378194_-	DNA circularization protein	Q8SBG8	Shigella_phage	8.4e-247	99.3
AWH68225.1\|378284_378797_-	hypothetical protein	NA	NA	NA	NA
AWH68226.1\|378878_380711_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	1.2e-304	99.3
AWH68227.1\|380703_380886_-	hypothetical protein	NA	NA	NA	NA
AWH68228.1\|380852_381122_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	1.0e-42	98.9
AWH68229.1\|381121_381478_-\|tail	phage tail protein	U5P076	Shigella_phage	9.0e-63	99.2
AWH68230.1\|381477_382974_-\|tail	phage tail protein	M1FN90	Enterobacteria_phage	8.5e-272	98.6
AWH68231.1\|382957_383128_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
AWH68232.1\|383136_383697_-	hypothetical protein	Q8SBH4	Shigella_phage	1.5e-104	98.9
AWH68233.1\|383693_384200_-	hypothetical protein	M1FPE2	Enterobacteria_phage	1.3e-83	92.9
384062:384077	attR	NA	NA	NA	NA
AWH68234.1\|384174_384585_-\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	5.7e-69	93.4
AWH68235.1\|384581_384905_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	2.5e-51	98.1
AWH68236.1\|384983_386213_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	1.5e-226	99.8
AWH68237.1\|386223_386826_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	6.8e-111	100.0
AWH68238.1\|386818_388045_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.4e-242	99.8
AWH68239.1\|388192_389926_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.8
AWH68240.1\|389939_390434_-\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	1.5e-84	97.5
AWH68241.1\|390550_390901_-	HNH endonuclease	Q8SBD7	Shigella_phage	2.2e-61	94.0
AWH68242.1\|391067_391292_-	hypothetical protein	NA	NA	NA	NA
AWH68243.1\|391559_392021_-\|lysis	lysis protein	K7P735	Enterobacteria_phage	2.2e-69	89.5
AWH68244.1\|392017_392632_-	endolysin	A0A192Y6G4	Salmonella_phage	4.5e-110	96.6
AWH68245.1\|392631_392913_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
AWH68246.1\|392899_393286_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
AWH72414.1\|393365_393623_-	hypothetical protein	A0A1C9IHX4	Salmonella_phage	5.6e-38	95.3
AWH68247.1\|393773_394526_-	antitermination protein	Q8SBE4	Shigella_phage	6.2e-138	99.6
AWH68248.1\|394539_395529_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-195	100.0
AWH68249.1\|395536_396346_-	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	1.8e-151	99.6
AWH68250.1\|396365_396755_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
AWH68251.1\|396751_397078_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	9.2e-54	100.0
AWH68252.1\|397074_397728_-	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	1.6e-126	99.1
AWH68253.1\|397727_398222_-	PerC family transcriptional regulator	K7PJR0	Enterobacteria_phage	4.3e-87	98.8
AWH68254.1\|398218_399160_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.1e-138	92.3
AWH68255.1\|399149_399329_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.3e-14	68.5
AWH68256.1\|399504_400089_-	DNA-binding protein	A0A1C9II13	Salmonella_phage	4.9e-58	61.4
AWH68257.1\|400117_400381_-	hypothetical protein	H6WRX5	Salmonella_phage	1.1e-09	51.7
AWH68258.1\|400487_401192_+	helix-turn-helix domain-containing protein	G8C7U1	Escherichia_phage	1.3e-68	58.7
AWH68259.1\|401416_402502_+	ParA family protein	H2BD62	Pseudomonas_phage	1.2e-60	39.0
AWH68260.1\|403434_403797_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
AWH68261.1\|403862_404687_+	hypothetical protein	U5P439	Shigella_phage	6.6e-149	99.3
AWH68262.1\|404815_405352_+	HD family hydrolase	A0A0P0ZCH9	Stx2-converting_phage	2.2e-100	99.4
AWH68263.1\|405342_405864_+	hypothetical protein	A0A0P0ZFU9	Escherichia_phage	8.6e-62	92.3
AWH68264.1\|406344_406608_+	hypothetical protein	A0A2P0P958	Salmonella_phage	8.8e-31	72.4
AWH68265.1\|406618_407539_+	DUF551 domain-containing protein	A0A0H4IU61	Shigella_phage	8.2e-124	74.4
AWH68266.1\|407538_408111_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.2e-109	99.5
AWH68267.1\|408147_408429_+	pyocin activator protein PrtN	K7PGU0	Enterobacteria_phage	2.8e-43	96.8
AWH68268.1\|408846_409380_-	hypothetical protein	K7PKJ4	Enterobacteria_phage	1.1e-99	100.0
AWH68269.1\|409744_410260_+	transcriptional regulator Zur	NA	NA	NA	NA
AWH68270.1\|410301_410511_-	CsbD family protein	NA	NA	NA	NA
AWH68271.1\|410626_412006_-	MATE family efflux transporter DinF	NA	NA	NA	NA
AWH68272.1\|412024_412633_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0

DBSCAN-SWA_3

934714 : 943640

Stx2-converting_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH72442.1\|934714_935095_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
AWH68713.1\|935091_935439_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
AWH68714.1\|935534_937127_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-181	63.4
AWH68715.1\|937157_937508_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.2e-40	66.4
AWH68716.1\|937504_937930_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
AWH68717.1\|940142_943640_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	2.7e-98	34.8

DBSCAN-SWA_4

2046461 : 2053601

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH69733.1\|2046461_2047100_-	class II aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5
AWH69734.1\|2047096_2048359_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AWH69735.1\|2048355_2049264_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
AWH69736.1\|2049459_2050227_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	57.4
AWH69737.1\|2050277_2050934_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	4.3e-50	46.1
AWH69738.1\|2051039_2053601_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.8e-31	20.7

DBSCAN-SWA_5

2633863 : 2643308

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH70259.1\|2633863_2634790_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.8e-23	30.8
AWH70260.1\|2634794_2635526_+	osmoprotectant uptake system permease	NA	NA	NA	NA
AWH70261.1\|2635506_2635614_-	hypothetical protein	NA	NA	NA	NA
AWH70262.1\|2635673_2636405_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AWH70263.1\|2636626_2638312_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AWH70264.1\|2638308_2639028_+	DNA-binding response regulator	NA	NA	NA	NA
AWH70265.1\|2639074_2639545_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AWH70266.1\|2639585_2640047_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AWH70267.1\|2640171_2642175_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.4
AWH70268.1\|2642171_2643308_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.6e-161	97.1

DBSCAN-SWA_6

2738115 : 2744445

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH70343.1\|2738115_2739510_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.9e-19	31.9
AWH70344.1\|2739684_2740578_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.3e-46	42.0
AWH70345.1\|2740614_2740878_-	hypothetical protein	NA	NA	NA	NA
AWH70346.1\|2740950_2742036_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.7e-101	53.6
AWH70347.1\|2742035_2742935_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.8
AWH70348.1\|2742992_2743871_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.3e-106	63.8
AWH70349.1\|2743875_2744445_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.5e-54	57.5

DBSCAN-SWA_7

3221809 : 3273222

Enterobacteria_phage(36.96%)

portal,terminase,lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH70797.1\|3221809_3224236_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.8e-213	49.1
AWH70798.1\|3224434_3224740_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AWH72530.1\|3224847_3225558_+	YnfC family lipoprotein	NA	NA	NA	NA
AWH70799.1\|3225560_3226121_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
AWH70800.1\|3226155_3226497_-	DUF1283 domain-containing protein	NA	NA	NA	NA
AWH70801.1\|3226631_3226958_+	YnfA family protein	A0A218MNG8	uncultured_virus	7.6e-24	55.6
AWH70802.1\|3226994_3227183_+	hypothetical protein	NA	NA	NA	NA
AWH70803.1\|3227163_3228378_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AWH70804.1\|3228389_3229409_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	3.3e-17	26.2
AWH70805.1\|3229466_3229595_+	transporter	NA	NA	NA	NA
AWH70806.1\|3229596_3230892_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	1.5e-155	62.3
AWH70807.1\|3230911_3231163_-	DNA-binding protein	S4TND0	Salmonella_phage	1.9e-14	48.7
AWH70808.1\|3231235_3233707_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
AWH70809.1\|3233800_3233992_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AWH70810.1\|3233988_3234177_-	cell division inhibition protein DicB	NA	NA	NA	NA
AWH70811.1\|3234592_3234880_+	hypothetical protein	NA	NA	NA	NA
AWH72531.1\|3234848_3235214_-	hypothetical protein	NA	NA	NA	NA
AWH70812.1\|3235225_3235378_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
AWH70813.1\|3235546_3235954_-	transcriptional regulator	I6PD69	Cronobacter_phage	7.2e-32	51.9
AWH70814.1\|3236034_3236262_+	transcriptional regulator	NA	NA	NA	NA
AWH70815.1\|3236245_3236767_+	hypothetical protein	NA	NA	NA	NA
AWH70816.1\|3236693_3237713_+	hypothetical protein	U5P0A0	Shigella_phage	3.6e-56	60.8
AWH70817.1\|3237753_3238155_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	6.0e-63	92.5
AWH70818.1\|3238688_3239714_+	hypothetical protein	A0A1B0VBT5	Salmonella_phage	3.2e-28	28.2
AWH70819.1\|3240029_3240233_+	hypothetical protein	NA	NA	NA	NA
AWH70820.1\|3240391_3240604_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	3.9e-29	95.7
AWH70821.1\|3240820_3241072_+	hypothetical protein	NA	NA	NA	NA
AWH70822.1\|3241138_3241417_+	hypothetical protein	NA	NA	NA	NA
AWH70823.1\|3241418_3242468_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.3e-112	57.3
AWH70824.1\|3242481_3243234_+	antitermination protein	Q8SBE4	Shigella_phage	2.5e-131	95.2
AWH70825.1\|3243909_3244125_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	7.7e-25	76.5
AWH70826.1\|3244878_3245094_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AWH70827.1\|3245098_3245410_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AWH70828.1\|3245406_3245940_+	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AWH70829.1\|3245936_3246434_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
AWH70830.1\|3246797_3247010_+	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AWH70831.1\|3247020_3247209_+	cold-shock protein	NA	NA	NA	NA
AWH72532.1\|3247356_3247512_+	hypothetical protein	NA	NA	NA	NA
AWH70832.1\|3247683_3247857_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
AWH70833.1\|3248008_3248419_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
AWH70834.1\|3248619_3248826_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
AWH70835.1\|3249379_3249874_+	DUF1441 domain-containing protein	A0A291AWV8	Escherichia_phage	8.4e-83	99.4
AWH70836.1\|3249873_3251976_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	97.3
AWH70837.1\|3251972_3252185_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
AWH70838.1\|3252184_3253693_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.7e-288	99.6
AWH70839.1\|3253541_3255665_+	peptidase S14	A0A291AWT6	Escherichia_phage	0.0e+00	99.8
AWH70840.1\|3255706_3256075_+	DUF2190 domain-containing protein	A5LH31	Enterobacteria_phage	9.7e-52	100.0
AWH70841.1\|3256067_3256343_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	8.6e-45	98.9
AWH70842.1\|3256354_3256933_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	4.2e-102	100.0
AWH72534.1\|3256929_3257331_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
AWH70843.1\|3257342_3258086_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
AWH72533.1\|3258146_3258533_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
AWH70844.1\|3258541_3258871_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
AWH70845.1\|3258842_3261908_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.3
AWH70846.1\|3261907_3262237_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	5.1e-60	99.1
AWH70847.1\|3262246_3262945_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	5.1e-134	99.1
AWH70848.1\|3262950_3263694_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.4e-150	98.8
AWH70849.1\|3263591_3264239_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.3e-112	97.7
AWH70850.1\|3264299_3267713_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.1
AWH70851.1\|3267782_3268382_+	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	1.1e-108	98.0
AWH70852.1\|3268446_3271407_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	1.1e-55	53.9
AWH70853.1\|3271406_3272009_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.4e-103	96.3
AWH70854.1\|3272079_3272670_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.1e-24	35.9
AWH70855.1\|3272988_3273222_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	3.2e-32	87.0

DBSCAN-SWA_8

4030203 : 4084519

Enterobacteria_phage(56.25%)

portal,terminase,holin,tail,integrase,lysis,head,capsid

attL 4036870:4036886|attR 4092465:4092481

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH71543.1\|4030203_4030785_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.7e-101	93.2
AWH71544.1\|4030784_4034186_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	8.2e-12	38.2
AWH71545.1\|4034250_4034850_-	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	9.1e-108	97.0
AWH71546.1\|4034920_4038418_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	98.1
4036870:4036886	attL	NA	NA	NA	NA
AWH71547.1\|4038478_4039120_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.6e-96	86.0
AWH71548.1\|4039017_4039761_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.6e-148	96.8
AWH71549.1\|4039766_4040465_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.5e-133	99.1
AWH71550.1\|4040464_4040794_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
AWH71551.1\|4040790_4043352_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	89.4
AWH71552.1\|4043344_4043779_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	2.0e-64	99.2
AWH71553.1\|4043760_4044183_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.6e-69	95.0
AWH72571.1\|4044198_4044939_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	8.9e-129	96.7
AWH71554.1\|4044946_4045342_-\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	98.5
AWH71555.1\|4045338_4045917_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	97.4
AWH71556.1\|4045928_4046282_-\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
AWH71557.1\|4046293_4046689_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	8.2e-57	93.9
AWH71558.1\|4047675_4048839_+	DUF262 domain-containing protein	A0A0R6PJX3	Moraxella_phage	9.6e-21	28.9
AWH71559.1\|4048843_4049392_+	hypothetical protein	NA	NA	NA	NA
AWH71560.1\|4049456_4049651_-	hypothetical protein	NA	NA	NA	NA
AWH71561.1\|4049896_4050280_-	AlpA family phage regulatory protein	NA	NA	NA	NA
AWH71562.1\|4050291_4050633_-\|head	head decoration protein	NA	NA	NA	NA
AWH71563.1\|4050642_4051683_-\|capsid	capsid protein	C6ZCY2	Enterobacteria_phage	5.7e-65	42.1
AWH71564.1\|4051901_4052351_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AWH71565.1\|4052362_4052605_-	hypothetical protein	NA	NA	NA	NA
AWH71566.1\|4052894_4054646_-	DNA primase	Q7M2A8	Enterobacteria_phage	2.2e-93	40.6
AWH71567.1\|4054642_4054942_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AWH71568.1\|4054959_4055181_-	hypothetical protein	NA	NA	NA	NA
AWH71569.1\|4055181_4055373_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	3.3e-11	57.6
AWH71570.1\|4055372_4055558_-	hypothetical protein	NA	NA	NA	NA
AWH71571.1\|4055550_4056162_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AWH71572.1\|4056594_4057131_+	hypothetical protein	NA	NA	NA	NA
AWH71573.1\|4057200_4057428_-	AlpA family phage regulatory protein	NA	NA	NA	NA
AWH71574.1\|4057429_4058665_-	DUF4102 domain-containing protein	A0A2H4JB45	uncultured_Caudovirales_phage	1.1e-99	44.9
AWH72572.1\|4058797_4059067_-\|capsid	capsid protein	A0A2I6TCE5	Escherichia_phage	5.3e-39	100.0
AWH71575.1\|4059128_4059461_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
AWH71576.1\|4059470_4060790_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.4e-233	98.9
AWH71577.1\|4060770_4062372_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.0e-307	98.3
AWH71578.1\|4062368_4062575_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AWH71579.1\|4062571_4064497_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
AWH71580.1\|4064471_4065017_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AWH71581.1\|4065156_4065258_-	hypothetical protein	NA	NA	NA	NA
AWH71582.1\|4065405_4065600_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
AWH71583.1\|4065961_4066255_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
AWH71584.1\|4066286_4066748_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	3.5e-75	98.7
AWH71585.1\|4066744_4067242_-	lysozyme	A0A1B5FP97	Escherichia_phage	7.9e-89	95.8
AWH71586.1\|4067241_4067457_-\|holin	holin	A5LH82	Enterobacteria_phage	2.6e-33	100.0
AWH71587.1\|4068029_4069127_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	6.7e-157	77.1
AWH71588.1\|4069316_4069700_-	antitermination protein Q	A0A088CD47	Shigella_phage	4.4e-55	83.3
AWH71589.1\|4069785_4069926_-	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
AWH71590.1\|4069922_4070285_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	3.6e-59	94.8
AWH71591.1\|4070304_4070499_-	protein ninF	NA	NA	NA	NA
AWH71592.1\|4070491_4070875_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	6.3e-62	95.7
AWH71593.1\|4070835_4071012_-	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
AWH71594.1\|4071008_4071536_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
AWH71595.1\|4071532_4071991_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.3e-81	100.0
AWH71596.1\|4072046_4072337_-	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
AWH71597.1\|4072333_4073035_-	Replication protein P	K7P6G2	Enterobacteria_phage	9.9e-130	100.0
AWH71598.1\|4073031_4073931_-	Replication protein O	A0A0K2FJ31	Enterobacteria_phage	1.1e-173	99.7
AWH71599.1\|4073963_4074257_-	hypothetical protein	A2SY75	Escherichia_phage	3.7e-46	100.0
AWH71600.1\|4074375_4074576_-	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
AWH71601.1\|4074676_4075390_+	helix-turn-helix domain-containing protein	A4KWV9	Enterobacteria_phage	3.5e-130	99.2
AWH72573.1\|4075556_4076375_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	3.3e-36	46.2
AWH72574.1\|4076856_4077180_+	antitermination protein	K7P718	Enterobacteria_phage	1.0e-52	100.0
AWH71602.1\|4077172_4077667_-	hypothetical protein	K7P861	Enterobacteria_phage	1.4e-85	99.4
AWH71603.1\|4077923_4078292_+	lambda prophage-derived protein ea10	M1FPD2	Enterobacteria_phage	7.6e-65	99.2
AWH71604.1\|4078371_4078641_+	host cell division inhibitory peptide Kil	M1FN78	Enterobacteria_phage	2.8e-40	95.5
AWH71605.1\|4078595_4079012_+	Host-nuclease inhibitor protein gam	C6ZCV5	Enterobacteria_phage	5.1e-73	98.6
AWH71606.1\|4079017_4079803_+	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	4.1e-148	99.2
AWH71607.1\|4079799_4080480_+	exonuclease	Q6H9Z0	Enterobacteria_phage	1.2e-132	100.0
AWH71608.1\|4080476_4080659_+	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	2.8e-28	96.7
AWH71609.1\|4080631_4080823_+	DUF1382 domain-containing protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
AWH71610.1\|4080833_4081115_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	2.5e-47	100.0
AWH71611.1\|4081213_4081435_+	conjugal transfer protein TraR	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
AWH71612.1\|4081431_4081980_+	hypothetical protein	K7PKY4	Enterobacterial_phage	7.7e-45	58.2
AWH71613.1\|4082110_4082809_+	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	1.6e-100	81.0
AWH71614.1\|4083045_4083213_+	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
AWH71615.1\|4083252_4083471_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
AWH71616.1\|4083448_4084519_+\|integrase	integrase	K7P6P6	Enterobacteria_phage	1.5e-201	99.7
4092465:4092481	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029164

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection