CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP015453	Dietzia psychralcaliphila strain ILA-1 chromosome, complete genome	4 crisprs	DEDDh,cas3,DinG,csa3,WYL,cas4	1	3	1	0
CP015454	Dietzia psychralcaliphila strain ILA-1 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP015453_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015453_2

601913-602009

Orphan

Consensus_repeat	Method
GCGCCGACGACCCTGCGGCCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP015453_2

>merge|CP015453|2|601913-602009|CRISPRCasFinder
GCGCCGACGACCCTGCGGCCCGCCTGACGGCGCCGACGACCCTACGCCCGCTGTACCTGCGAACCGCCTGACCGCGCCGACGACCCTGCGGCCCGCC

>CP015453|2|1|601913-602009|CRISPRCasFinder
GCGCCGACGACCCTGCGGCCCGCC	TGACGGCGCCGACGACCCTACGCCCGCTGTACCTGCGAACCGCCTGACC
GCGCCGACGACCCTGCGGCCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP015453.1\|AWH94577.1\|604073_605411_-\|polysaccharide-biosynthesis-protein	unknown	unknown	unknown
CP015453.1\|AWH97141.1\|591502_593365_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH94582.1\|613161_614022_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235714
CP015453.1\|AWH94581.1\|611926_612754_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|181159
CP015453.1\|AWH94568.1\|590545_591364_-\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|377857
CP015453.1\|AWH94576.1\|602013_604074_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371991
CP015453.1\|AWH94580.1\|608007_611859_-\|amino-acid-adenylation-protein	unknown	unknown	gnl\|CDD\|274093
CP015453.1\|AWH97142.1\|599719_600415_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|133022
CP015453.1\|AWH97143.1\|600549_601446_+\|glycosyl-transferase-family-2	unknown	unknown	gnl\|CDD\|133027
CP015453.1\|AWH94579.1\|607025_607475_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH94570.1\|595634_596573_+\|UDP-glucose-4-epimerase	unknown	unknown	gnl\|CDD\|187566
CP015453.1\|AWH94583.1\|614163_614676_-\|inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|376376
CP015453.1\|AWH94578.1\|605388_606783_-\|peptidase-M1	unknown	unknown	gnl\|CDD\|341066
CP015453.1\|AWH94569.1\|593442_595545_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH97145.1\|612931_613138_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377200
CP015453.1\|AWH94572.1\|597322_598993_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
CP015453.1\|AWH94574.1\|599333_599723_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378376
CP015453.1\|AWH94573.1\|598989_599337_-\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH94571.1\|596621_597311_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
CP015453.1\|AWH97144.1\|607648_607912_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|316153

Protein	Function_ID	Function_description	E-value
CP015453.1\|AWH94568.1\|590545_591364_-\|calcium-binding-protein	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	1.66219e-33
CP015453.1\|AWH94581.1\|611926_612754_+\|short-chain-dehydrogenase	gnl\|CDD\|181159	PRK07890, PRK07890, short chain dehydrogenase; Provisional.	1.8662e-108
CP015453.1\|AWH97142.1\|599719_600415_-\|glycosyl-transferase	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.39916e-41
CP015453.1\|AWH94576.1\|602013_604074_-\|hypothetical-protein	gnl\|CDD\|371991	pfam12250, AftA_N, Arabinofuranosyltransferase N terminal. This domain family is found in bacteria, and is typically between 430 and 441 amino acids in length. This family is the N terminal region of AftA. The enzyme catalyzes the addition of the first key arabinofuranosyl residue from the sugar donor beta-D-arabinofuranosyl-1-monophosphoryldecaprenol to the galactan domain of the cell wall, thus priming the galactan for further elaboration by the arabinofuranosyltransferases. The N terminal region has been predicted to span 11 transmembrane regions.	1.84667e-81
CP015453.1\|AWH97143.1\|600549_601446_+\|glycosyl-transferase-family-2	gnl\|CDD\|133027	cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.	1.97022e-15
CP015453.1\|AWH94571.1\|596621_597311_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	7.12812e-07
CP015453.1\|AWH94580.1\|608007_611859_-\|amino-acid-adenylation-protein	gnl\|CDD\|274093	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.	0
CP015453.1\|AWH94582.1\|613161_614022_+\|enoyl-CoA-hydratase	gnl\|CDD\|235714	PRK06142, PRK06142, crotonase/enoyl-CoA hydratase family protein.	4.09724e-122
CP015453.1\|AWH94570.1\|595634_596573_+\|UDP-glucose-4-epimerase	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	4.34239e-120
CP015453.1\|AWH94583.1\|614163_614676_-\|inorganic-pyrophosphatase	gnl\|CDD\|376376	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase.	5.63171e-80
CP015453.1\|AWH97145.1\|612931_613138_+\|hypothetical-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	1.74726e-23
CP015453.1\|AWH94572.1\|597322_598993_-\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	1.31174e-06
CP015453.1\|AWH94574.1\|599333_599723_-\|hypothetical-protein	gnl\|CDD\|378376	pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304). Members of this family of hypothetical archaeal proteins have no known function.	2.03836e-24
CP015453.1\|AWH94578.1\|605388_606783_-\|peptidase-M1	gnl\|CDD\|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	1.2855e-167
CP015453.1\|AWH97144.1\|607648_607912_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	5.13323e-30

>CP015453.1|AWH97143.1|600549_601446_+|glycosyl-transferase-family-2
MAIDVMLPYYGDVGHFKKAVDSVLAQSYRDFRLVVVDDGYPDPEPARYMGEITARDERVTYEKNETNLGANGNYRRCLGMVTAPIVVVMGADDVMLPNYLQVVADGFAAVPDAAVMEVGVNVIDEHGAPVRPLSDTVKAFTSPKADGRTVLHGEKLMTSLMHGNWTYFPSLAWNSEWIRRIGFREGLDVVQDLALLVDVITAGGHMVYDPTLAFLYRRHSASDSSVRALDGRRFDEEARFFAGEADAFAARGWKNAERATRLHLTSRFNALSLLPSAARAGKFAEGGKRLLGHSFRKF
>CP015453.1|AWH97142.1|599719_600415_-|glycosyl-transferase
MRNRDVWLVVPCFNEGTVIEDVLSSARETFPNIVAVDDGSADESAAAIHSAGAHLVRHPVNLGQGAAIQTGVEYARVQPGARYFVTFDADGQHQVKDVLAMVERLRAEPVDIVVGTRFGRPRREGDQVPLIKRVVLKTVVMLSPRTRRLGLTDAHNGLRVFNRRVADDLNLRMNGMSHASEFVELMDSRGWRVAEQPVDILYTEYSMSKGQSLLNGINILSDGLVGKRLPR
>CP015453.1|AWH94574.1|599333_599723_-|hypothetical-protein
MIKALLLLAGAALVAFFLANRRKARAKAGVKIGFVLFVVFMVYAVMRPDDLTVVANALGVQRGTDLVLYALVMGFAFVTVSTYVRFREQEMRYARLARSIALQNAVRPEDQPDATAVTPAADDDDRLRR
>CP015453.1|AWH94573.1|598989_599337_-|hypothetical-protein
MTGRPDHDAEVRGEAARLVHRLELARTRLDAALDPRDPTPAPGSPPPPPRAPAGGVATGPGLDDDEVRTLLAPAVARVARLHEIARSLADGSASEESAAQAVRALADTQPNRRPR
>CP015453.1|AWH94572.1|597322_598993_-|hypothetical-protein
MTGALPENPPPGQVRRLLELAARLVAARDALTTARDALASSPTRSPALVALADAIDGEARGVDELLAGVYRLVELAEDIWADLDGPEPAPVADRDRLRASLDRAVDNTLTDMARMAGTGPPGRSGAGALDTRDTRDTPGTRDTPDTRATLDTRATVAAWAGATPEEVYSGVEHMSTADRRLLALAEPEVVGGTYGVPWAVRARANAVAVRRALHREQLAGTPWSPRIGRLETMARRGPGRRRRSFVAFSPLRGGRMIEVVGDLGPRTEAVAVYVPGTGTNLDMSHVNTDVAVDLVEAGGGRVAVVAFLDGEFPQDIMADAGNPRYAEAMAPRLVRFCREVDRVIGIECPGAALTVVGHSYGGRIVGTAERRGLRADRVIYAESPDLGVGVSGPADWRSPGPVRRFSFTAPGDPVELLQVRSGLRRSWSTSDLGDGAVRLDTGYFADGTPVYGTRGHGGVFYRGCGAFDAMLAVMLGGRVPLWRDREIRARHTRVRRGDDGRVLPTVWRHVRGLWLHRADDPYGDAEVLWESPERLVPVPVSTRAAGHGVVPGTGGD
>CP015453.1|AWH94571.1|596621_597311_-|hypothetical-protein
MAPRDTRFTRPSITALGMGAVGVVSVGLISTGLWYDSHRSEQAVERARQQVNTAQTAHAAPEPVAASSSERSTGSSTPESTGNPTESPEPPEPAEVEAAAPAAIVPTEVAVPRQAVPPPAATLAATAPQPSVQSPAQPRVSTPATPATTGDGAAAEPTGDATGEPSEQEITQPVEPRPAPGGVLPGLIDLVRPFLPQPNVAQQAPAADVRTGAGTGVADEGQANADDAG
>CP015453.1|AWH94570.1|595634_596573_+|UDP-glucose-4-epimerase
MRALVTGGAGFIGSTLVDRLLSEGHEVTVVDDLSRGRLENLSRARESGSRFAFRELNLTDPAIEDLVAEVAPEVVFHLAAQIDVRLSVEDPVHDAEVNVVGTVRLAEAARRAGVRRIVFTSSGGSIYGPVTDLPVAESRPVDPMSPYAAGKVAGEVYLEMFAKLYGIEWAGVAPANVYGPRQDPHGEAGVVAIFSQRLLAGQPTRVFGDGGNTRDYVFVDDVVDAFVRAATVPSAAGLRFNVGTGVETSDRELHTLVAAAAGSGDDPEYAPARLGDVARSALEAGRAAEVLGWTPQVSINEGVARTVDYFRG
>CP015453.1|AWH94569.1|593442_595545_+|hypothetical-protein
MVMLTLTALLVVPGLIVGLAAQLPLRLAVGTSIPVSAGIVTIATYAYGRSGVPWSLGGYAVATAITTVVVGLVGLFISGSVWMWRRRRRRTGRTVHPAAPPGRRHSRWWLLPAASVLVSAWLIGQMIITELSATPDGTANIFQGWDAHWHANYIQFIHQTGLASPDQAGELRYPENGATLYYPSTWHAIAALVMGLRGIGAVETYNLVQIGTMAVAFPLGVAALTWLITHRRFSRPAVATSAAVAAMATPLFPGLPFVEVMVAATPSGVANGLAGLVAAVVVAALADRRLVPAAALGLVGISGVHPSAMVTAGVIVLFWWLFEGLWRPVRGRLRDFLVLAGIGLAGVLTLLPQILTVSEDADEISAFEFEIDADRAAVWGRALTLQVRHVQDWGVRWVLLALAVLGVIILLRRLVLWPILLWGGLLVVCVNSMSTFGNWTGGVLRGIGSIYYNDPRRIGVILAIVVAAAVGVGVGVTVQALAGWLARLIDPITDPRGTGAAGLRVAVALAALVATGSWVVQASPEYAVAAGANQRAGRMVDSHDLRAFEWLSEQPQAYSGLIYTNPDEGSGWMYATHGLPSTARHYLQSGSTAPLTTTLFFSMDRAGTDPRVDAALDQLGVTYVYVSPPNYWGFQKPNEHLLRLDQAPGLVKVYSDSQVRIFAVRAAFTEGEIAQILADSPFPPDRRTPLTRASALYGGE
>CP015453.1|AWH97141.1|591502_593365_+|hypothetical-protein
MARPAPRVVAACALIVVVFTAIRTWVAAAGWFYWDDLILHGKAAAHRFPDPGFLLADHDGHLMPGGMALAWVAAHVAPLDFRLPLVQIAVLQLIAGAALARMLWVLLRGRPVLLVPLVLALAIPLGLPAATWWASAVNSLPMAAAMAWAVASTIRLAETGRRRNAVGAVLATAVGLLFVEKAVLVPVVAAAVLWCWWWTGRSERGHDRGQHSDHHDDEVGSREPLGAAAPTWTAVWRSTRWMWAGQAVLLVGWAAVFASTVGRAGGGEVDSDSDGPGPGLWALIDKTYRLAVGPTLAGGPWRWERWHPGPPIAEPPALAVVAGALLCASVLAWSLLTRERTGPAWAFAAVYPLASVLMVAVGRFGPDTAAEIVQTLRYHADSAIVLAAVLAMALAAPRRDGPLPRAAARWEGWALAGLVVVVVSSSSISTATYREVWAEQPSRDYVLPLVDALRARDAPMLQADVPPEVLLPVTAPAHRLASVLAGVPGLPPIGSWTTEPVVVDAAGRLHPADVVPGRTLGQGPEPGCGHRIDAGGTRIGLDGPLLGRDWVLRVNYLAARDGTVEVRLDEGDRVEVPVTAGLATVFVRVEGSGTGVTFTPGEGLGELCIGSGPVGVLVPR
>CP015453.1|AWH94568.1|590545_591364_-|calcium-binding-protein
MASRTPRATRTTRVTVVSVLAILVLAGLGRCADVEPGMGGDIGMPVSSSSLAPPPPPPMSDPAAPPVPEPAPPEAIPPGDPLVASARLALPQLEVKGRAPKTGYDRDLFGQAWSDDVSVEFGRNGCDTRNDILRRDLHDITVRPGTRDCVVLTGVLYGPYTGERIEFERGQDTSTAVQIDHVVALSDAWQKGAQQLTADQRRDLANDPLNLLAVAGHANQSKSDGDAATWLPPRREFRCSMVSRQILVKERYGLWVTAAEHEAMERILTGCG
>CP015453.1|AWH94576.1|602013_604074_-|hypothetical-protein
MSAARLLAWRAGELLAGLVVAALVGASTLTAIDALSLPDPSWLPEALGATVAAGLVVVTGWHLLRRGRRGAGGHGGRVAGPGTGPGTGERGLWILGTAGPAFLASSHLGLLLNGTPHYLFGLGGDQLNRVAYVTRFADSPALNDPFYADAAPFYPPQWFWVGGRLAALAGVEGWEFYKPYAIITMAIAGAIAFVAWRWLVPTRLAVLFGLVTAVVGGHTNAYEPYSWILICLLPQVVVATFLLCARAAARSRGAGAGRPTWPLVVTIGVYLGWAALGYTLIAGFAALLVALVVVVHTWRYRAERGLVAALLVRLVAAAGISALLASVFWHRFLLAVLGGAETEPSVANDFAPEIGSHWPLPMFEVSAAGLLCLIGVVWLVVTVWPGGAGRLADRGAASLSARIDSVEDDHDHNHGDDDEEATLSRPGWPLPSPARALVLAQALGLMTLTVFGWYALSGLRAVTGSTLLPFRMIPVITLALALAGVVGSLALARWAVATSPARSRGRVAAAAVVVAALAAIQMMQHVSQEDSDFAAAAREAPAPPTEVLAAIDEMTPGREPSDLVVLTSVPTVYAYRPFFTFQAPTQAYATPAGRYTERTDEIRRWATTTSPGDLADAVSSGPFRGPDVMVLEREGSRNWVLPVMVNRMPLARNNSREKIRFHPELFADPELFDVREVGSRMVIVRR
>CP015453.1|AWH94577.1|604073_605411_-|polysaccharide-biosynthesis-protein
MTTPAAADPTPTTGHRAAGGMRALTLATVFAAASGYLVMLVAGRALGPADYPLFATYWGAFFALGGVANGLMQEATRAVRSARLSSTPDAAGMTAAGRVTPVPAPGPGSRVRLLPAGLVLGLVLAAVVMVSAPVWPALGLPTFSGIGVAVMAFGILGFSMQAATAGALSGTERWGLYAVLLTVDAALRLVVAGVAWWFGDAGLGFALATVAGAFTWALMIALSPVTREALARALDVGRRRFWRNTASAMLASAGTAVLVVGFPVFVTATVRESDPAPLVGAVILAITLTRAPLLVPLTSFQSAIIVYFVQRRDLGPRALAGPLGLVTAVGMVGAGAAWLVGPWLIRVLFGAEFELPGAVLAALTAASVGTAALMVTGNAALAFDRHLLYNVGWWVAVLAALILLVSVPGPLDVRSAIALLAGPGIGVVVHIVGLAASARPEPGPA
>CP015453.1|AWH94578.1|605388_606783_-|peptidase-M1
MDLKAVKKDLVAKIAAPRDSSRADPVDPYLPSAGNHGYRVTRYELDLTYKMSSNNLRGGAVITATATEPLESVQLDMSPHLEVAKVSLDRGRVAKYTRPRGKLTVTPAEPIPVGAAFTLTIRYSGNPRPIRGAWGEVGWEELTDGVLVANQPNGAASWFPCDDHPSSKAPFRIRLTTDSPYRAVVTGSLVGKKRSGSMTTWEFDLPQPTSTYLVTINLGLYEHLEVTGGKVPFRAYLPADLKRDFRVAFARQVEMIDVFTDLFGPYPFPDYKVVVTDDELEIPLEAMGMSTFGRNTAEAGTGDERLIAHELAHQWFGNAVTAAEWKHIWLHEGFACYAEWLWTEFSGGADAGSHALRYYSKLQNSPQNLLLADPGPKDMFDDRVYKRGALTLHALRLTIGDEKFFQLLRDWVAKYSGSTATTDDFLHMAADHSPVDLRPLWAAWLFSEPLPSTLGMPDDHAGRR
>CP015453.1|AWH94579.1|607025_607475_+|hypothetical-protein
MTTENPTTGPLDRTEAARLLAEVEGRPPVSSTRDARVFAWFAAVIAVVMGVGTIAIMFTNWAMVPYLVLLFAVIFWQRRSIGASPRGSSRTYLWGVAGSGAMVLVVVTGLHVIRTTIGLTPWWYLLGAVLVAVPGLVAAARIARRGTAR
>CP015453.1|AWH97144.1|607648_607912_+|ArsR-family-transcriptional-regulator
MIHAPVRFSIVAALAGVDDAEFATIRDAVEVSDSALSKQVAVLEKAGYVKVRKGYVGKRPRTWLSLSREGRRAYGSHLEALRAIAGG
>CP015453.1|AWH94580.1|608007_611859_-|amino-acid-adenylation-protein
MHTIPEQYLRSSQAPDPRSLLDILGSAAQGHPDAPCLDDGSRVLSYREVWEEIHTSARWMQSQGVGAGDRVGIHMPSGGVELYLAILSTLAAGAAYVPVDVDDPAERAELVFGQAKVAAVYTAQGMRVTDPGRPVDPSRHRGPTVDDDCWIIFTSGTTGLPKGVAVTHRSAAAFVDAESRIFLSDAPLGPGDRVLAGLSVAFDASCEEMWLAWAHGACLVPAPRSIVKSGLDLGPWLRERGITVISTVPTLASIWPEEMLADIRLVILGGEACPPELAARLAGDGREVWNTYGPTEATVVACAAQLDGSGEVSIGLPLDGWDLAVVDATGLPVGYGESGELVIGGVGLARYLDPDKDAEKYAPMDSLGWERAYRSGDVVRLEADGLYFTGRVDDQVKIGGRRLELGEVDTAVSALPGVSAGAAAVKKTDAGQSVLVAYLVADDPEHFDLADAAGILRDRLPAGVVPRLTLVDELPTRTSGKVDRAALPWPLAQTSAAETELDGTDAWVAELWSSALGADVSGVDEDFFALGGGSLAAAHVVVAVRERFPGVTVGDIYDRPRLGDFAGYLDELEPVAAVEPRHVRPVGRGAQVVQVLATLPLLTITGLQWLTWLGIANNVAAAVGIPWARPVSWWVLGVLAVLLLLPAGRMVVTGLLCRALMAGVTPGAYPRAGSVHLRLWAAERLVEVSGVANLEGAGWLTPFARMLGAQIGHGVDMHTMPPVTGLLTVGDGASIEPEVDLAGHWLDGDVLHIGAVEIGENAVVGARSTLLPGAVVGRGAHVEIGSAVVGTVKAGKRYAGSPALKRGKRGSSWPAEPAPHNRVWSLVYQLSAVALGAMPLLAVAAGLALVVWGARDAATPGQLLLRAALWSVPGTLVALALFAALTLVSVRLLSVGLREGFHPVHSRIAWQAWCSERIMDASRNWLYPLYASMLTPMWLRALGARIGKDVEASTVLLIPSLTTVRDGAFLADDTMVAPYELGSGWMRLEQAQIGKRAFLGNSGIASAGRKVPARGLVAVLSSAPQKAKKGTSWLGSPPQKLPRAVTDGDSDARTYQPPRRLKIARGAWETLRLVPVWLSFLLLVSVLVVMQEIHQEWGFGVAALTSGITLAYAGLVALFVSVLAKWLFVGRIRVGEQPLWSSFVWRNEVADSFVELLAAPWVARPATGTPILNVMLRLLGSRIGRGVWCESYWLPEADLISLGDGVTVNRGCVVQTHLFHDRIMQIDRVDLADGATLGCHCVTLPASSIGDGSTVGPASLVMRGDRIPPGTRWQGNPIAPWRG
>CP015453.1|AWH94581.1|611926_612754_+|short-chain-dehydrogenase
MSESLEDKTVVIVGAGPGFGRTLALRAAERGATVVVAARTASRLDGIVDEVRAAGGRAIAAAVDATEPESVRALRETVAQHTDAVHGLVYSAFAVPSMKPLAQTDHEQISRGIDLSVLGALRATQEFTPLLEAGGAQGDETQGDGAHRSPSSVVMMASAVIHHSRERYAGYKIAKTALVALGHSLATELGPRGIRVNTVAPGYIYGDTLRAYFEHLATKYGGTVEDVYEHTAAKMDLRRLPSEREIVDPVLFLLSDAASAVTGQTLTVDCGEFHT
>CP015453.1|AWH97145.1|612931_613138_+|hypothetical-protein
MDYNAGSGAKRLTRSEDRWVGGVCGGLADYFGLDPVLVRVLFVASMLLPGPQVLLYVILWFVMPDVRA
>CP015453.1|AWH94582.1|613161_614022_+|enoyl-CoA-hydratase
MSETTSATPGQYSSVRIEKGVRDPYVAQVTLIGPGPHNGMGPDFWAEMPRVMAELDADPEVRAAVIAGEGRNFSYGLDLMAMMPQFMEFLPQDKTPDASRNERILDFVENMRRAIDSVAAARTPTVAAVQGRCIGGAVDLISACDVRHGAADSTYSIREVKVGIVADMGSLARLPHIIGQGLTRELALTGRDIDAEAALRYGLVTHVADDAAGVLDSAHATAAEIAGNPPLVVRGTREVLNRGIEGQIYENNRYVATWNAGFLASADMMEAISATFEKREARFTGR
>CP015453.1|AWH94583.1|614163_614676_-|inorganic-pyrophosphatase
MSVEVTIEIPKGSRNKYEIHHETGKIYLDRFLFTSMGYPADYGYIDHTLADDGDPCDALVLLDESVYPGVIVNSRVVGVYTMSDEAGGDDKLLCVPALDPRWEHIQDVNDVPEFELKAIEHFFLHYKDLEPGKHVTPGEWRDKAHGEKLVAEGIENFREHPEEKAEPFRG

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Crispr_ID: CP015453_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015453_3

1467371-1467479

Orphan

Consensus_repeat	Method
GCGGGAGACCGACCGGCTGCAGGGCCGCGGGTAGACCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP015453_3

>merge|CP015453|3|1467371-1467479|CRISPRCasFinder
GCGGGAGACCGACCGGCTGCAGGGCCGCGGGTAGACCGATCGGCTGCAGGGCCGCGAGGCTGCAGGGCCGCGGGTAGACCGACCGGCTGCAGGGCCGCGGGTAGACCGA

>CP015453|3|2|1467371-1467479|CRISPRCasFinder
GCGGGAGACCGACCGGCTGCAGGGCCGCGGGTAGACCGA	TCGGCTGCAGGGCCGCGAGGCTGCAGGGCCG
CGGGTAGACCGACCGGCTGCAGGGCCGCGGGTAGACCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP015453.1\|AWH95199.1\|1472277_1474437_-\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
CP015453.1\|AWH95189.1\|1458725_1459424_-\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95195.1\|1465941_1466871_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379128
CP015453.1\|AWH95198.1\|1470076_1472221_-\|glycogen-debranching-enzyme	unknown	unknown	gnl\|CDD\|131155
CP015453.1\|AWH95194.1\|1464954_1465629_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
CP015453.1\|AWH95187.1\|1457097_1457610_-\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95188.1\|1457958_1458696_-\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95200.1\|1475189_1476164_-\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95202.1\|1477073_1478159_+\|quinolinate-synthase	unknown	unknown	gnl\|CDD\|236489
CP015453.1\|AWH97273.1\|1478287_1479163_+\|nicotinate-nucleotide-diphosphorylase-(carboxylating)	unknown	unknown	gnl\|CDD\|236125
CP015453.1\|AWH95190.1\|1459464_1460199_-\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95204.1\|1479761_1480337_-\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95191.1\|1460506_1462141_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95203.1\|1479227_1479752_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95193.1\|1464661_1464898_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH97271.1\|1462162_1463929_-\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
CP015453.1\|AWH97272.1\|1474602_1475202_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH95192.1\|1463979_1464657_+\|IMPACT-family-protein	unknown	unknown	gnl\|CDD\|224653
CP015453.1\|AWH95201.1\|1476276_1477002_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
CP015453.1\|AWH95197.1\|1467521_1470074_-\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|200475

Protein	Function_ID	Function_description	E-value
CP015453.1\|AWH95199.1\|1472277_1474437_-\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	2.95519e-56
CP015453.1\|AWH95202.1\|1477073_1478159_+\|quinolinate-synthase	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	9.82049e-171
CP015453.1\|AWH95195.1\|1465941_1466871_+\|hypothetical-protein	gnl\|CDD\|379128	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin. AbiEi_4 is the cognate antitoxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	0.000218874
CP015453.1\|AWH95198.1\|1470076_1472221_-\|glycogen-debranching-enzyme	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP015453.1\|AWH97271.1\|1462162_1463929_-\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP015453.1\|AWH95194.1\|1464954_1465629_-\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	1.88521e-47
CP015453.1\|AWH95197.1\|1467521_1470074_-\|malto-oligosyltrehalose-synthase	gnl\|CDD\|200475	cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase). Maltooligosyl trehalose synthase (MTSase) domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
CP015453.1\|AWH95192.1\|1463979_1464657_+\|IMPACT-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	1.04361e-46
CP015453.1\|AWH95201.1\|1476276_1477002_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	1.15061e-15
CP015453.1\|AWH97273.1\|1478287_1479163_+\|nicotinate-nucleotide-diphosphorylase-(carboxylating)	gnl\|CDD\|236125	PRK07896, PRK07896, carboxylating nicotinate-nucleotide diphosphorylase.	2.03063e-146

>CP015453.1|AWH95195.1|1465941_1466871_+|hypothetical-protein
MTDINGLRSRLLTTQQLLGRGLSSQALSRSVEARELIRIRPGFYVEGDARELPRDARHLLSVLAADTALGCPVFSHSSAAVILGLPSWGLALRRVVVSEDGAKGRTRTTNLTAHRTLRLRRDDVISVDGLRVTKPALTVVDLATSARRDAAVAVADAAVNGGLVSVPALECALEQAVGRMGIKKARAAMVMVDGRSESVAETLSRLSFSDYGLPTPETQANIFDTHGNRIARVDFFWREYGVIGECDGFGKYFDGADSAETRRRLAREKDRDAELMALGYRVVHWRWADLEQPWLLAERIRRVLFPVAA
>CP015453.1|AWH95194.1|1464954_1465629_-|nitroreductase
MTDAATTLEQILDDRYSCRGFTSEPVPEETIDRILQMAQRTASWCNSQAWQVDLVTGQATAEFGKHLTEYVLGNGMRSDLPAPERYEGVYGERRRASGYGLYTALGIERSDKDARLTQMLENYRFFGAPHVAVITSDAGLGTYGAVDCGGYVATFLAAASSLGVSTCAQAALALYSDGVREHLGIPEDRLIVCGIAFGYADPEHPANTFRADRADLTDVVRRHG
>CP015453.1|AWH95193.1|1464661_1464898_+|hypothetical-protein
MSMQPYQSNSIEVQKQQVRKDARTTAIALGVTVVALPIALFASSFFTVVAILAGIVAIYKGNQVRQAISGKPKNRELR
>CP015453.1|AWH95192.1|1463979_1464657_+|IMPACT-family-protein
MTDPGTRVLRLSAGPDVTGEYEEKRSRFLAVLRRCDDEEGARALVADLRRAHPAARHHCSAFLVDVPGASRIERSNDDGEPSGTAGTPMLEVLRGSGLTGVSAVVVRWFGGTKLGTGGLVRAYGSAVSAAVDEAWRAGRVVEVTRTPAWRAEVDHTLAGGLEGAVRAAGAQVLGVDYGRRVALTVAGDIEQLGPILAARSSGGVEWRAAGVATTENAARRRDMES
>CP015453.1|AWH97271.1|1462162_1463929_-|malto-oligosyltrehalose-trehalohydrolase
MTFPSSDTFSVWAPTADAVGLVLDSADADPIAMHRAADGWWTSTVVREVGRDYGFVVTGDDGEVSDPRPDPRSRRQPHGVHGLSRVHRVDTSRWTDHAWTGRQLAGSVIYEMHVGTFSPVGTLTSAIEFLDELVELGVDMVEVMPVNAFNGEYGWGYDGVAWFAVHEPYGGPDAFQEFVNACHARGLGVCLDVVYNHLGPSGNYLPEFGPYLSAADGPWGAGLNLDGPHSGEVRRYIIDNALRWFDEFHVDALRLDAVHALHDASAVHLLEQLAVEVESLSTHLGRPLSLVAESDQNDPRLVTAREGGGYGLQGQWDDDVHHAVHAAVSGERQGYYSDFGSLESLRQVLTGAFLHAGTWSAFRGRVHGRPVDVGRVPGSRFVAYTLTHDQVGNRAAGDRPSMNLTPAQQLAKAAIVLCSPFTPMLFQGEEWGARTPFCFFTSHPEPELADAVRRGRTREFAEMGWDPATVADPQDPETFRRSVLDRSEQTQDEHAEILRGYRALIALRRSEPDLSDPWLGSVRVDCGVEAEDGRWLVVHRGSLALVVNLGTEPSRVPLAGEAVLVSGAVADDDSVFCQAFGFAVVRVV
>CP015453.1|AWH95191.1|1460506_1462141_+|hypothetical-protein
MASKRKTSALLAVGLVAGIVSPIAPLAVAQQLTTQSTAVTHTCELVKPWGLLGAKNQGTIVSPETVVVRYPATVAPGEVFTAYVQPGAAAMRTTDGRQAGLLSYDIAFPSNSTNLAANYNGGGSGYSIPGNGPALVDRVAANGQLATEGPFARISGGATAFHGANSRNGDAVDRWKAGMQVASNTTFRFPEVALKMRAPVSLANGSTITTALKAAGQSGDSDDPTRNTIQGAEEGGWGTERTNYYFCGSSANAGSLSTTTVNSSLPRYLAKTTTRMVTSDTLLPLAARTTNLTAEVSSTEELMSNIRPGGMNFTIRHKATGQLLATVPNVTVGANGQATASYTFPTLSNGSYRDEYEVTATYAGRVDDIESSTSEPVTVSVGYNEVNANVVLTSTNGALSGGTMPVTLRAAFALPAGKPAPAGLAIQLFRNDLPHGAPITIPTGTTTANYTFPTDTLTQAQETRTYRYRAEVVPVISGVDRFVGGSATPVAAIVVGSSPGSPLPEGGQGSVALEGFFRAPQLVWDWLTGSIGQAGAFSSGFAEN
>CP015453.1|AWH95190.1|1459464_1460199_-|hypothetical-protein
MAATSTAAATTAVAIVMAAAAPASANLPGVDPGTNVVIVDSTLIQVAVDAPNLTAGTVGVSLQNNTTSQITCNGIRGTDTGTTSRAGTVTTDEIVARTVDYYATYPHAFDPGMTIPVGSNGTNIITIGADLGSITGLIPGSAAGSLRSEFGAAGRLSEMYTSARLDGLVGVIESITLPASSGTTRTVALNDPASGPRPADFRPGALFACQISGQDFLFSGYFGDATPTIPLGSITSSETGRFGS
>CP015453.1|AWH95189.1|1458725_1459424_-|hypothetical-protein
MAALPIRTLALISALAVGLGSPAVAHAQIPGAIDAGTVVITDSNRLVVSVDAAQATATNVTGRIQNTTGTGFRCATPGVQGLEYPGQVTEAEIVARSMRYYANNIFQPIGGVGLDITGIELDPMPIGSLLDILPTGSFNKALGATRSDLMDIRSAQEAARVAGHTGDPRVGGNVAFNVGANASVTWSAQLGTPASGQRSDFQAAALFFCTETTGARRAHVFAGYEGGLAPTL
>CP015453.1|AWH95188.1|1457958_1458696_-|hypothetical-protein
MTFPIRAALLATAILTTLTAAPAVAGAQNSIPGDVNAGKVVVTSLSGVAVTVTQPNLSSVTVSIANGSGRNLTCAGPEGNSTVGVSVTAAPVAQAAVHYYANFAHKSDPVSVFGSSGNVQNQDGTITAQVPFGPLLGLLPSGSIAPILGDAYAARDWIARSNTAAKIAGHAGTTGTFSVNNGATQSRTVALSPPSHGARTDFAAGAFLVCTDPGGQAYAFAGYEGGTPPSPSSNGTLPIGSTGNR
>CP015453.1|AWH95187.1|1457097_1457610_-|hypothetical-protein
MSPASLRSTLRTAVAVGAFGALAVFGTAATAGAQPVVEAPSFGSLGSLTGLIGDGNWGNLDGFFDGSVGETGSLTGSVGSVDGSLGDAGSQTGALDTLEAGSSNGSAGSMGQIAGNIDPDGVTEANTGSAGMSSDLTGMLTGVSAGSVGDIVQSGSSALGAFTPPAPALP
>CP015453.1|AWH95197.1|1467521_1470074_-|malto-oligosyltrehalose-synthase
MAAADQPTTGPLRRGAALASTYRVQLRTPASDPDGRGFVLADVEELVPYLADLGVGSVYLSPLMTATPGSTHGYDVVDPTTVAAELGGIDALRSLRQACRAHGLGVVVDIVPNHLGVDQPVANRWWWDALRRGPDSPYFSFFDFDTEPANGADGRIAIPVLGSPEDIEQLVVVTPTGPGTESGSGTESGSGSGEAGSVEAELHFYDHRFPVAPGTGEGSAQQVHDRQHYRLVHWREPLLGYRRFFTVTGLAGLRQEDPAVFDATHSEVRRWCEEDLVDGIRVDHPDGLADPVGYARRLRELAGDDRWLLVEKILAPAEVLEPAMPVDGTTGYDALRLIDQMLVDHSGQARLTELATRYSGGPGDEEQVHEQSALLKRQIVIEDLSPELTRLARAVRRDAAGGRESSDAAGQDPIGVSSVGPDGVAGGGIDGGDDDADAMLREALVSVIAKTPVYRADYPVLRGTLPSIMEDLQRQEPKLESALRLVAGALALGGEASIRLAQVTGAATAKAEEDRLFYRLGRLVSLNEVGGSPGRMGLPVEAFHLAMAERARATPLAMTTLSTHDTKRGEDVRARISVLSQLPGEWADLVAEVFRRFPPPAEDAGYFLLQVIVGVWPESGEPSDVLRSRLHDYAEKALREAAVHTTWTDQDGDFESSAHKWIDTLLDSGGALLAPFARRIAPAGRDNSLIAKATQLMSPGVPDVYQGTEVWEDSLVDPDNRRFVDYAPLRSGAVARSGHPKFTLVREALRIRREHPAAMAGGAHVPLPVRGPAAADVVAFTRSVAGRPAVGMIARRRTAVVGAADVAGTSVQLPDGEWAVRPDGRSISGRVDVGDLLSGSPVVLIVREAD
>CP015453.1|AWH95198.1|1470076_1472221_-|glycogen-debranching-enzyme
MTNDDAQQSAPELIRAWPGTAFPLGATYDGTGTNFSLFSEVAERVELCLIDREGAETRVELTEVDGNIWHCYLFGVTPGQRYGFRVHGPYEPEHGLRCDPSKLLLDPYGKAFDGEFDGHPSLHSYDLDDPDSRNTEDSLGHTMVTVVINPYFDWGNDRSPGHEYHNTVIYEAHVKGMTATHPDIPAEMRGTYAGMTHPAIIDYLTDLGVTAIELMPVHQFMQDQRLVDMGLRNYWGYNSFGFLAPHNEYAFAEKPGDAVSEFKAMVKAFHDAGIEVILDVVYNHTAEGNHMGPTIGFRGIDNQAYYRLVEGDEQHYMDYTGTGNTLNVRHPHSLQLIMDSLRYWVLDMHVDGFRFDLASALARGLHDVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGQFRDTVRDFWRGEPATLGEFASRLTGSSDLYENTGRRPTASINFVTAHDGFTLNDLVSYNEKRNEANGEDGNDGESHNRSWNCGVEGPTDDPAVLDLRHRQRRNMLTTLILSQGTPMIAHGDEVARTQSGNNNVYCQDNELAWMSWELDEEKEDLLAFTRRLVRLRKDHPVFRRRRFFGTVLRDDEDPQDIAWFSPDGSEMTRKDWDSGFGKSLAVYLNGEGIHEPDARGQRIIDDSFLMLFNAHHEPIEFSLLGSEYAESWEVVLDTADHLEERAGELGSDDTITVADRGTIVLRKVT
>CP015453.1|AWH95199.1|1472277_1474437_-|acyltransferase
MATETPAAPARRRRGKMAYRHDIDGLRGLAIALVVVFHIWMGRVSGGVDVFLTLSGFFFLGSLLRGASDGRTPLNPIPHLTRLVRRLYPALVVTVAATVAGTILIKPPTQWSSIFEQTLASLFYYQNWELALTSQDYAAADATISPLQHLWSMSVQGQFYLVALAVVLGLTALWRLVVRRGTPTTFLLVVVAAGTAASVWWSAHGQAVNQPWNYYDTGARMWELLIGGLVAILLAGIVLPWPLRMLSTIAGLFLVVSTGFLFDGAAYFPGPLAWYPIGGALLIILGGNLPEGERATPRRDPVTWLLSARVFRRLGDISYSLYLWHWPLLILWLSYDQQAEITLVSGLVIVAVSVVLALLTEKYVERPLRMASRARSRATPAAQQRDALRKGPGRSARDQQRFVKATVLVVVAAVASLGTVGWWTATSASRSAVPYVDSLTDPDHPGARAFFDGVPAPEGVGYLPSLLQVGNDLPVSTMDGCISNFESSEVQMCVYGDVTAPRTVALVGGSHAEHWISGLDEVGRHYGFRVVTLLKMGCPLTLDASVSDSDEPLYESCAEWTPAALAALVGLAPEFVFTTATRPVGVVGPDIAPRQYVELWRALDQQGIGVIAIRDTPWLNQGRGPIRAGDCLGDGGTPEECGMPRERSIAPINPAGLAGAGIDSVRLIDLTDGLCDAENCPVVVGNVIVYHDSHHLSGSWVRSASGELARQMGPATGWW
>CP015453.1|AWH97272.1|1474602_1475202_+|hypothetical-protein
MGTLSGVVGPAVAALLVWIVSAPRSELLSVGDGRGLRLPESGTDGGSQLLMLIILLGAAVVSAVLVLWHRHPGLRRPGGIPVFLLLPGLTCAVAAAVATPLAALLAPPAQDAPYGAVVAQSPAVGALFFDRMIYGTSGPSWDWFPPGAGWLVFGAMIAAFTVAVLAHFSYSSDLRDGLDGAEPGNPPEQRGATGQVQSS
>CP015453.1|AWH95200.1|1475189_1476164_-|hypothetical-protein
MPTGAERPLDQALAETVELVESALQRAAPIQGVFDLHPFDHSAAGLTHRRRREIALEQLPAAIPLPFRPDAKPDEVAPRLQLFRGRRVVLWALFVLTVASAARPELSLFFGVAWLVALIWPRGSGETTRTSTRTPQDDAVGGGHATEIELRIIWMARWQAAAIVRTRAWRSEELAAGVGRIDVSSVLGNLTERALSLYRFTSTAPPMPSRSQPELRHQWQREQQRIGAIRAELVEHVAALIVYREHLDLISDLLDQRDLMAVYSERAAAFDDVLPPSPEGPVLLDATTEQRDLHSNLASQLQYLSAITDGSGTALPLCDSAQEL
>CP015453.1|AWH95201.1|1476276_1477002_-|NUDIX-hydrolase
MSQSNTGHEVLVVVGQVRPVPQAASPVLHVLLWQHALGPAAGRWALPGGGVRDDEDLAASATRQLAEKVDVRSLSHLESVAEFSEPSRVPGRRVFASGFLGVLPSDADPAVPEDTAWFRVDRLPDTVFDHAEIVARARARLAAKLSYSTLGFALAPEEFTLSTLAQHYAAALGHPVDPTNLQRVLTRRGELVRCGRSAPPGPSGGRPAALYRFSERRLRITDQFATLRPPADIEQCRSSGT
>CP015453.1|AWH95202.1|1477073_1478159_+|quinolinate-synthase
MNTATGLNTTTAPRPGTAIGRLDSPLASRIRRTEHGYTGVEATDEWADEIRRLADLRDAVILAHNYQVPEIQDIAHHVGDSLALSRIAAGAEQSTIVFCGVHFMAETAKILSPDKTVLIPDEAAGCSLADSITAEQLAEWKSEHPDAVVVSYVNTTAAVKELTDICCTSSNAVDVVESIDPAREVLFLPDQFLGAHVRRKTRRDNVLVWAGECHVHAAINGDQLEDQARRHPGADLYVHPECGCATSALYLAEEGAVPADNVKILSTGGMVDAARASGASQVLVATEVGMIHQLRKAAPEIDFMPVNADASCPYMKMITPAALLRALVEGADEVHVDPATAAAARGSVERMIAIGNPGSGE
>CP015453.1|AWH97273.1|1478287_1479163_+|nicotinate-nucleotide-diphosphorylase-(carboxylating)
MTGGGDDEVFDPDTRADALIAIRRALQEDLRYGPDATSLATVPADARVTARMATRADGVVAGLPLIPMVLAEVLGDDFAVELLAADGDRVAAGDVVAEISAPTLGLLTAERTLLNLVCHLSGVASATRAWADELEGTGCAVRDTRKTLPGMRLLQKYAVRCGGGVNHRLGLGDAVLVKDNHVVAAGGVVPALTAVRERFPELPCEVEVDSLEQLDQMLDAGVDLVLLDNFPVWQTQMAVQRRNTLSPRTRLESSGGLTLDGAGDYARCGVDFLAVGGLTHSVAVLDLGLDM
>CP015453.1|AWH95203.1|1479227_1479752_+|hypothetical-protein
MTGFWDTSEKSTPAERRQQRMAEARRRVESGENTSPPPPRSTPAKPARSGSARTSRAATVDPLSVTGAQFAVWRSVQHFCATDSLPDARGGDLDLLVAWSDSIQPFRLRQRIVARLDSQGAWLPVCYAKDGSRESITQAQADRYREVRLGESTLSGGAQKSLKETDHPEVTATL
>CP015453.1|AWH95204.1|1479761_1480337_-|hypothetical-protein
MSSTEETRIDVTRTEKTPTEKTRTGEIRSAIDAATVPGADALERARMIVVDKLGEWDSLGVDEIVESVCEAYEAHSGEPLRLADVDPSDPDNDTPALRNLRYARAARTAIIDLQREGTIVAVDEQSGDAEAVDLTGDRNEDRDIDHDGHHHDEVTATKETTGPAGRESGADEMVLSTGPRPQGRRFALSSR

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Crispr_ID: CP015453_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015453_4

2054226-2054334

Orphan

Consensus_repeat	Method
ACCACCGGGGTGACGCCCGGTTCCGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP015453_4

>merge|CP015453|4|2054226-2054334|CRISPRCasFinder
ACCACCGGGGTGACGCCCGGTTCCGTGCGTCGTTCCGGCGCACCACCGGGGTAGCTCCCGGTCCCGTGCGTCGTCCCGGCGCACCACCGGGGTGACGCCCGGTCCCGTG

>CP015453|4|3|2054226-2054334|CRISPRCasFinder
ACCACCGGGGTGACGCCCGGTTCCGTG	CGTCGTTCCGGCGCACCACCGGGGTAGCTCCCGGTCCCGTGCGTCGTCCCGGCGC
ACCACCGGGGTGACGCCCGGTCCCGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP015453.1\|AWH95670.1\|2048995_2049931_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
CP015453.1\|AWH95677.1\|2057162_2057564_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376717
CP015453.1\|AWH97333.1\|2050421_2050949_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366703
CP015453.1\|AWH95679.1\|2058011_2058689_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
CP015453.1\|AWH95667.1\|2046394_2046952_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
CP015453.1\|AWH95673.1\|2052512_2053010_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379199
CP015453.1\|AWH95678.1\|2057709_2058015_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|313765
CP015453.1\|AWH95676.1\|2055643_2057161_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223679
CP015453.1\|AWH95666.1\|2045465_2046344_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
CP015453.1\|AWH95682.1\|2060844_2061378_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
CP015453.1\|AWH95665.1\|2044886_2045318_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227703
CP015453.1\|AWH95671.1\|2050970_2051936_-\|recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
CP015453.1\|AWH97334.1\|2060047_2060812_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
CP015453.1\|AWH95681.1\|2059542_2059884_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
CP015453.1\|AWH95675.1\|2054441_2055644_-\|DNA-processing-protein-DprA	unknown	unknown	gnl\|CDD\|223829
CP015453.1\|AWH95680.1\|2058685_2059405_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
CP015453.1\|AWH95669.1\|2047962_2048787_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
CP015453.1\|AWH95683.1\|2061413_2061656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179479
CP015453.1\|AWH95668.1\|2046999_2047725_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
CP015453.1\|AWH95672.1\|2052012_2052495_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227787

Protein	Function_ID	Function_description	E-value
CP015453.1\|AWH95670.1\|2048995_2049931_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	6.11177e-168
CP015453.1\|AWH95677.1\|2057162_2057564_-\|hypothetical-protein	gnl\|CDD\|376717	pfam02021, UPF0102, Uncharacterized protein family UPF0102. The function of this family is unknown.	1.46135e-34
CP015453.1\|AWH97333.1\|2050421_2050949_+\|hypothetical-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.5684e-17
CP015453.1\|AWH95679.1\|2058011_2058689_-\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	7.98988e-89
CP015453.1\|AWH95667.1\|2046394_2046952_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.55915e-102
CP015453.1\|AWH95673.1\|2052512_2053010_-\|hypothetical-protein	gnl\|CDD\|379199	pfam13460, NAD_binding_10, NAD(P)H-binding.	6.69231e-19
CP015453.1\|AWH95678.1\|2057709_2058015_-\|hypothetical-protein	gnl\|CDD\|313765	pfam10611, DUF2469, Protein of unknown function (DUF2469). Member proteins often found in Actinomycetes clustered with signal peptidase and/or RNAse-HII.	3.8943e-62
CP015453.1\|AWH95676.1\|2055643_2057161_-\|hypothetical-protein	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	4.96655e-169
CP015453.1\|AWH95666.1\|2045465_2046344_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	2.42779e-59
CP015453.1\|AWH95682.1\|2060844_2061378_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.24807e-63
CP015453.1\|AWH95665.1\|2044886_2045318_+\|hypothetical-protein	gnl\|CDD\|227703	COG5416, COG5416, Uncharacterized integral membrane protein [Function unknown].	2.24709e-18
CP015453.1\|AWH95671.1\|2050970_2051936_-\|recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	4.32225e-117
CP015453.1\|AWH97334.1\|2060047_2060812_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.31181e-136
CP015453.1\|AWH95681.1\|2059542_2059884_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	2.87044e-69
CP015453.1\|AWH95675.1\|2054441_2055644_-\|DNA-processing-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	1.14005e-75
CP015453.1\|AWH95680.1\|2058685_2059405_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.38222e-44
CP015453.1\|AWH95669.1\|2047962_2048787_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	1.16774e-125
CP015453.1\|AWH95683.1\|2061413_2061656_-\|hypothetical-protein	gnl\|CDD\|179479	PRK02821, PRK02821, RNA-binding protein.	8.30875e-26
CP015453.1\|AWH95668.1\|2046999_2047725_-\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	2.93081e-137
CP015453.1\|AWH95672.1\|2052012_2052495_-\|hypothetical-protein	gnl\|CDD\|227787	COG5500, COG5500, Predicted integral membrane protein [Function unknown].	4.28044e-17

>CP015453.1|AWH95673.1|2052512_2053010_-|hypothetical-protein
MDPCALGRSLEGVDAVVVALGISENPVTVRLRGARGTADDVRSRGTATTVAAMEGHGIDRLVVLSTYGIGDSAAGLSPSMRLVVAGLLGPQFRDHEKQEQIVRRAPLDWTIARPVNLVDGPRSAVYADTGMRTVSMKVGAEQVGGALADWALDGPYLRETVALSS
>CP015453.1|AWH95672.1|2052012_2052495_-|hypothetical-protein
MVCTVFLLAATYGSALMMGFFATWSVAVLPGLDATGAQAAVRVMTSVNQTVLTPAFATVFFGTPLALVLASVASAAEGAWVVTAACTAALFLYGLGVVGVTTTVNVPLNDALSRAHGDDPEAAWLRFATRWRPWNHVRAVSATAAFSLCLVAWHPIALSG
>CP015453.1|AWH95671.1|2050970_2051936_-|recombinase-XerC
MVTRGGGEPERVLPGPLADVVADWAEHLASSRGRSGATRRAYASDVRQLLLFLRDQGVPLGTAADLDPALTLPALRSWLGSLVTGGAARSTVSRRVASVRSFSTWAHRAGLLGRDVAARLEAPRAQRHLPEVLDAVQAAETMRTTELGAAEGDPIALRDRLVMELLYSCGIRVAELCGLDMDDVDTERRLLRVIGKGDRERAVPYGVPAERALRDWLDGGRPALTTSSSGPALILGARGGRLDPRTARRVVNEVTDATPGSPRVSPHALRHSSATHLLEGGADLRHVQELLGHSTPATTQIYTHVSAERLRAAYRGAHPRA
>CP015453.1|AWH97333.1|2050421_2050949_+|hypothetical-protein
MVAAAMIAILLVVPTAAASPDPPRRDLRGPLPGPVSAVTAFDPPVEPWLAGHRGVDLAAAPLTTIRAPADGTVVFAGAVGGRPVLSIDHGAGLRTTYEPVRASVRTGDSVATGDAVGHLLAGHAGCPVASCLHWGARLASGGPSGDDDYIDPLSMLSVHDRPIRLKPTRPGDGFG
>CP015453.1|AWH95670.1|2048995_2049931_-|30S-ribosomal-protein-S2
MAVISMKQLLDAGAHFGHQTRRWNPKMRRFIFTDRNGIYIIDLQQTLTYIDQAYEFVKETVAHGGTVLFVGTKKQAQEAIAEEAAKVGMPYVNQRWLGGMLTNFQTVHQRLIRLKELEAMEQSGGFEGRTKKEILMLTREMTKLARTLGGMRDMTKVPSVVWIVDTNKEHIAVGEARKLNIPVVALLDTNCDPDLVDYPIPANDDAIRSVSVLTRVIASAVAEGLKARSQAGKATGEEAEPLAEWEAEQLDQVTGETAAPEAEKAAEAPAADATETEAPAAEAAATEAPAAESTEAEPAATEAPAAESTEA
>CP015453.1|AWH95669.1|2047962_2048787_-|elongation-factor-Ts
MANYTAADVKRLRELTGSGMMDCKKALEETDGDFDKAVEVLRIKGAKDVGKRAERTTAEGLVAVKDGVMIEMNSETDFVAKSAEFIALADKIVDVAASQGISDLDALNAAELDGSTVADAVVSFSAKSGEKLVLRRVGKLDGPVAVYLHKRSSDLPPAVGVMVAYEGEGESAEAAARSAAMQIAALKAQYVSRDEVPAEVVAKEREIAEATAREEGKPEQALVKIVEGRLNGFYKDVVLLDQPSVTDSKKTVGALLAEAGATVSAFLRFEVGQA
>CP015453.1|AWH95668.1|2046999_2047725_-|UMP-kinase
MTDPRDGYKRVMLKLGGEMFGGGGVGIDPDVVQSVARQIAEVSRTGAQIAIVIGGGNFFRGAQLQQRGLDRARSDYMGMLGTVMNCLALQDFLEQEGVSTRVQTAIHMGQVAEPYIPLRAERHLEKGRVVIFGAGMGMPYFSTDTTAAQRALEIKAEVLLMAKAVDGIYSDDPRTNPDAELFARIEHRECLERGLKVADTTAFSLCMDNKMPILVFNLLTEGNIARAVAGEEIGTLVSSPA
>CP015453.1|AWH95667.1|2046394_2046952_-|ribosome-recycling-factor
MIDDTLLEAEEKMEKAVEHVRDELAAIRTGRANPGMFNRVLCEYYGSLTPITQMASIAVPEPRMLIIKPYEMSQIGPIENAIRNSDLGVNPTNDGQVLRVTVPQLTEERRRDLVKQAKSKAEDGRIALRGVRRKAMDELKRIDKDGEAGEDEVNAAEKELDKLTHRFVADVDELVKAKEGELMEV
>CP015453.1|AWH95666.1|2045465_2046344_-|phosphatidate-cytidylyltransferase
MDTAPPGPPGPTAAAAAPPSRAGRDLTRAIPVGVGLGALVIASIAFNPRAWYLVAAGAVAIGTWEVFKRLRQAQFRLPLIPLLLGGQAMVWAGFFAEAKGAFAAFAATTVLVLVWRLLMAGLTTAPENYLRDVSVALFVLVWIAVPGSLGAMLADGDFGAQRVVALILLVVCSDVGGYITGVLFGKHPMAPAVSPKKSWEGFAGSMLFAIVGGALVVVLLFDDNFLKGVLLGVLTVLTATLGDLIESQVKRDLGIKDMGTLLPGHGGFMDRLDSVLPTAVVVWIIFTYVVPT
>CP015453.1|AWH95665.1|2044886_2045318_+|hypothetical-protein
MPTRSHDPVEPSRTDSAPGSAEIAPLEDTHAAAPATVPDEGSRDHGRGHDAELPDVTAGKLGSAWIGLVLGALVTILLLIFVAQNTTSTDVRYLGLEFSLPLGVLILFAAIAGALIMALFAGFRILQLRMRARKARKINARQH
>CP015453.1|AWH95675.1|2054441_2055644_-|DNA-processing-protein-DprA
MSDRGEDTLVPDPVRAAYAYLGAVTERPTAQLWDLVDAVGAVEAAHRIRAGQVGDALVSQTEARRSRVRPDDLLGEAAEVGARLLVPGDPGWPAAALDPLDRPRRRRGSGRGAVETALRPLGLWWRGPADPTTVVHRSVAVVGTRAPTPYGRAVTADVTSGVAAEGFTVVSGGAFGIDAAAHRAVLGAGGTTIAVLAGGVDRLYPRGNEGLLSAVAESGAVVSDQPPGTGVTRYRFLDRNRLIAALSRATVVVEAAARSGALSTAAWATVLDRPVGAVPGPVTSVASTGCHLLVRDGRAVLVGRTADVVELAGDMGETTPPPTGHASSWDDLDDVTRRVLEALPTTGGAVPAEVAASAGVPPSTARAVLGRLLVDGAVLRGPSGWRRSGHTGRQLTLPVD
>CP015453.1|AWH95676.1|2055643_2057161_-|hypothetical-protein
MALGRTWAVALSGIGGQLVEVEADVGRGLPGVSIVGMPDSAVLQSRDRMRAAVTNSGLTWPPGKVVLSLSPADLRKEGAGFDLALATGTLTASGVLPDARFAGTLLLGELALDGRVRSVRGVLPAVLAARDAGLTRAIVPTANLTEARLVRGIDSAGVDSLAMLADWSRGVGDLVALAPPVRRTVQDDTHDLSEVHGQEDCRRAVEVAAAGGHALLLRGAPGTGKTMLARRLPGLLPDLAEREALEATAIRSVTGRLAPDDPLLSRPPFVAPHHSASLASLVGGGTRRARPGAVTFAHQGVLFLDECAEFHGRVLDGLRTPLEEGEVRVGRSEGLSVFPARFQLVMAANDCPCGVPRPADCTCTAVARRRYGRALTGPLRDRIDISARTLPMGSGLFGVGEGEESAVVRSRVAEARAAAAQRWAGCPGAGNARSNAVVPGRVLRDSGRLDRGARNPLDRALAHGLLSPRGVDRCLRLAWTLADLDGAESPGGSHVAEALVLRGED
>CP015453.1|AWH95677.1|2057162_2057564_-|hypothetical-protein
MAGDRAGSVNGADGGDMRRRTGAIGEAHAARLIEARGGVVISRNWRSRTGELDLVALDTGGRLRFVEVRTRTGTGFGTPAESVTVTKRHRLRTLAREWLAAHPGSWHQVCFDVIGVDLADPSRPRLEIFEDVF
>CP015453.1|AWH95678.1|2057709_2058015_-|hypothetical-protein
MSAEDLENYETEMELSLYREYRDIVGQFTYVVETERRFYLANAVELIPRSADGEVYFDVRMSDAWVWDMYRPARFVKYVRVLTFKDVNIEELDKPELRLPE
>CP015453.1|AWH95679.1|2058011_2058689_-|ribonuclease-HII
MSPVRPGRVRVTRRDGRLALEAALGRRGLGPVAGVDEAGRGSCAGPLVVAACVLGDRLAPELADLDDSKKLSQPTRERLHDAVLRRAAAVSVVVIEPDRIDARGVHRCNLEGMRRAVAALDPAPGFVLTDGFAVDGLGCQSTSVIGGDAVVASIAAASVLAKVTRDRIMVDLDPRYPGYGFAAHKGYSTAGHARAIEQLGPSDIHRMSYANVRRAAQAHSRSSTR
>CP015453.1|AWH95680.1|2058685_2059405_-|signal-peptidase-I
MRGGRRDRRATEKKGQPWYIEIPMLVVIALVLVFVFQTFVGRVYQIPSESMEPTLHGCAGCTGDRIFVDKISYRFGDPKPGDVVVFEGPDSWNQGYQSIRSDNPAIRTLQNIGGVIGIIPPDQNDMVKRVIAVGGQTVGGCSPDGRLLVDGEPLDEPYLNVDPSLDRNPLNCAFGPVTVPEGNYWMMGDNRSNSADSRYHMGDEFQGTVPDENVIGKVQAIILPFNRIGSVPSPDINAG
>CP015453.1|AWH95681.1|2059542_2059884_-|50S-ribosomal-protein-L19
MNTLDFIDNKSLRDDIPAFRPGDTLDVHVKVIEGSKERVQVFKGVVIRRQGGGVRETFTVRKVSFGVGVERTFPVHSPTIDHIDVLTRGDVRRAKLYYLRNLRGKAAKIKEKR
>CP015453.1|AWH97334.1|2060047_2060812_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRLDVVTVFPDYLAPLRLALPGRAIDRGILDLAVHDLRAWARDVHKSVDDTPFGGGPGMVMRPTVWGDALDDLVRPAVDESGERPLLIVPTPAGRPFTQTDAHRYARRGHLLFACGRYEGIDQRVIDEASTRMDVEEVSIGDYVLIGGEVAVLVIAEAVVRLLPGVLGNQRSHEEDSFSDGLLEGPSYTRPEVWRDRPVPEVLRSGNHAKIARWRRDESLRRTARRRPDLLDGADLRPADLDILDSAGWTPSSH
>CP015453.1|AWH95682.1|2060844_2061378_-|ribosome-maturation-factor-RimM
MELVVGRVVKSHGVRGELVVDVRTDSPRDRFGVGTRLTGRTGKGNNVTDREVTIEAARDHSGRLLVRLAGVADRDSADALRGMLLLVDSDALPETDDPDEFHDHQLVGLRVLDTGGAELGEVTEVVHTAGGELLAVRLSDGADALVPFVSRIVPEIDLDSGTCVIDPPEGLLDLGTS
>CP015453.1|AWH95683.1|2061413_2061656_-|hypothetical-protein
MSDMVVDAVDHLVRGIVSDPDAVSVRSSGGRRGTVIRVTVSPDDLGRVIGRGGRTASAIRTIVAAVGGPDVRVDVVDTDR

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Click the colored protein region to show detailed information

Crispr_ID: CP015453_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015453_5

2538270-2538333

Unclear

Consensus_repeat	Method
ACGGTTGAGGGGCGGCGGTTGAG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP015453_5

>merge|CP015453|5|2538270-2538333|CRISPRCasFinder
ACGGTTGAGGGGCGGCGGTTGAGGAGCCACGGTCGAGGGTCACGGTTGAGGGGCGACGGTTGAG

>CP015453|5|4|2538270-2538333|CRISPRCasFinder
ACGGTTGAGGGGCGGCGGTTGAG	GAGCCACGGTCGAGGGTC
ACGGTTGAGGGGCGACGGTTGAG

Protein	Signature genes	Signature genes Name	Protein_function
CP015453.1\|AWH96007.1\|2529177_2529924_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225501
CP015453.1\|AWH97401.1\|2525429_2527181_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224055
CP015453.1\|AWH97405.1\|2549973_2551389_+\|AIR-synthase	unknown	unknown	gnl\|CDD\|274944
CP015453.1\|AWH97402.1\|2527270_2528941_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224055
CP015453.1\|AWH96008.1\|2530000_2530558_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP015453.1\|AWH96020.1\|2548826_2549903_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|274940
CP015453.1\|AWH96017.1\|2545745_2546270_+\|sulfur-reduction-protein-DsrE	unknown	unknown	gnl\|CDD\|188559
CP015453.1\|AWH96009.1\|2530639_2531869_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378343
CP015453.1\|AWH96019.1\|2547546_2548830_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274942
CP015453.1\|AWH96015.1\|2540720_2541596_-\|nucleoside-triphosphate-hydrolase	unknown	unknown	gnl\|CDD\|237065
CP015453.1\|AWH96018.1\|2546274_2547165_+\|acyltransferase	unknown	unknown	gnl\|CDD\|143587
CP015453.1\|AWH97403.1\|2533297_2534560_+\|lactate-2-monooxygenase	unknown	unknown	gnl\|CDD\|239448
CP015453.1\|AWH96022.1\|2552251_2553355_+\|glycosyl-transferase-family-1	unknown	unknown	gnl\|CDD\|274943
CP015453.1\|AWH97404.1\|2534785_2536291_+\|sodium-independent-anion-transporter	unknown	unknown	gnl\|CDD\|223732
CP015453.1\|AWH96016.1\|2541731_2545409_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
CP015453.1\|AWH96012.1\|2536293_2537478_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|172015
CP015453.1\|AWH96021.1\|2551388_2552261_+\|acyltransferase	unknown	unknown	gnl\|CDD\|143587
CP015453.1\|AWH96011.1\|2532660_2533101_+\|hypothetical-protein	unknown	unknown	unknown
CP015453.1\|AWH96014.1\|2538641_2540360_-\|sodium:proline-symporter	unknown	unknown	gnl\|CDD\|271370
CP015453.1\|AWH96010.1\|2531968_2532664_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP015453.1\|AWH96007.1\|2529177_2529924_-\|hypothetical-protein	gnl\|CDD\|225501	COG2951, MltB, Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane].	3.69947e-32
CP015453.1\|AWH97401.1\|2525429_2527181_-\|ABC-transporter-permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.3772e-125
CP015453.1\|AWH97405.1\|2549973_2551389_+\|AIR-synthase	gnl\|CDD\|274944	TIGR04050, MSMEG_0567_Cter, AIR synthase-related protein, MSMEG_0567 C-terminal family. Members of this family include the C-terminal region of MSMEG_0567 from Mycobacterium smegmatis, where the N-terminal is a GNAT family N-acetyltransferase, and resemble the full length of sll0787 from Synechocystis sp. PCC 6803. The conserved cluster that contains these is found broadly (Cyanobacteria, Proteobacteria, Actinobacteria) in about 8 percent of genomes and appears to be biosynthetic. The product is unkown. [Unknown function, Enzymes of unknown specificity].	1.09537e-140
CP015453.1\|AWH97402.1\|2527270_2528941_-\|ABC-transporter-permease	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	9.36431e-73
CP015453.1\|AWH96008.1\|2530000_2530558_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.01096e-11
CP015453.1\|AWH96020.1\|2548826_2549903_+\|radical-SAM-protein	gnl\|CDD\|274940	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family. Members of this protein family are radical SAM proteins related to MSMEG_0568 from Mycobacterium smegmatis. Members occur within 8-gene operons in species as diverse as M. smegmatis, Rhizobium leguminosarum, Synechococcus elongatus, and Sorangium cellulosum. The function of the operon is unknown, but similarity of MSMEG_0568 to some cofactor biosynthesis radical SAM proteins suggests a similar biosynthetic function. [Unknown function, Enzymes of unknown specificity].	2.96665e-178
CP015453.1\|AWH96017.1\|2545745_2546270_+\|sulfur-reduction-protein-DsrE	gnl\|CDD\|188559	TIGR04044, MSMEG_0572_fam, MSMEG_0572 family protein. This model describes a family of proteins with remote similarity to the DsrE/DsrF-like family (see pfam02635). All members are found in a context of at least seven genes that includes a radical SAM protein, suggesting biosynthesis. The system is sparsely but broadly distributed in bacteria, including Actinobacteria, Proteobacteria, and Cyanobacteria.	3.96921e-90
CP015453.1\|AWH96009.1\|2530639_2531869_+\|hypothetical-protein	gnl\|CDD\|378343	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236). This domain, found in various hypothetical bacterial proteins, has no known function. This family contains a highly conserved arginine and histidine that may be active site residues for an as yet unknown catalytic activity.	3.80836e-11
CP015453.1\|AWH96019.1\|2547546_2548830_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274942	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family. Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor.	0
CP015453.1\|AWH96015.1\|2540720_2541596_-\|nucleoside-triphosphate-hydrolase	gnl\|CDD\|237065	PRK12334, PRK12334, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.46016e-54
CP015453.1\|AWH97403.1\|2533297_2534560_+\|lactate-2-monooxygenase	gnl\|CDD\|239448	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.	9.90433e-176
CP015453.1\|AWH96022.1\|2552251_2553355_+\|glycosyl-transferase-family-1	gnl\|CDD\|274943	TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family. A conserved gene cluster found sporadically from Actinobacteria to Proteobacteria to Cyanobacteria features a radical SAM protein, an N-acetyltransferase, an oxidoreductase, and two additional proteins whose functional classes are unclear. The metabolic role of the cluster is probably biosynthetic. This glycosyltransferase, named from member MSMEG_0565 from Mycobacterium smegmatis, occurs in most but not all instances of the cluster. [Unknown function, Enzymes of unknown specificity].	1.76147e-141
CP015453.1\|AWH97404.1\|2534785_2536291_+\|sodium-independent-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	3.60701e-125
CP015453.1\|AWH96012.1\|2536293_2537478_+\|hypothetical-protein	gnl\|CDD\|172015	PRK13375, pimE, mannosyltransferase; Provisional.	3.55177e-37
CP015453.1\|AWH96021.1\|2551388_2552261_+\|acyltransferase	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	1.20065e-68
CP015453.1\|AWH96018.1\|2546274_2547165_+\|acyltransferase	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	8.03977e-73
CP015453.1\|AWH96014.1\|2538641_2540360_-\|sodium:proline-symporter	gnl\|CDD\|271370	cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and related proteins; solute-binding domain. Dur3 is the yeast plasma membrane urea transporter. Saccharomyces cerevisiae DUR3 also transports polyamine. The polyamine uptake of S. cerevisiae DUR3 is activated upon its phosphorylation by polyamine transport protein kinase 2 (PTK2). S. cerevisiae DUR3 also appears to play a role in regulating the cellular boron concentration. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	5.33274e-109
CP015453.1\|AWH96016.1\|2541731_2545409_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0

>CP015453.1|AWH96012.1|2536293_2537478_+|hypothetical-protein
MSRPTTTTRGLSVAAGLTLSVAVTVVVMTQTLTGFMLDLQVFQDAGKAMLAGRDLYSEDFPTRSGFRFIYPPFAAIAFIPLAPLAATAAQVAWTAATIAAVWAILAMVATRLRLHGAMALALALTGVALLLEPIRANLGFGQINVFLVLMVTADVLGFTPRRVRGVLVGLAAGVKLTPAAFALMFLARKDWASLVRALGAAVTTIVLGHLVRPADSAYFWTTEFFLTDRGGPPEFVPNQALSGLLARAGLTGAPLDLAVYGFFLLTAAAAAWGACLLIRDDRPVDALMLVSLGVFIASPVAVTHHWSGMFIALPLLLASRRLPVRLALAALVVAHLIGTHLAYSLTPLDPAAHLLQWLVGNAQGLTGIAAFGILLADAARQPTPTRPDPEDPDA
>CP015453.1|AWH97404.1|2534785_2536291_+|sodium-independent-anion-transporter
MAPVGVLASFRYAFSSPRRLRTEVLAGLVVALALIPEAISFSILAGVDPRVGLFASFTMAVTIAFTGGRPAMISAATGAIALVIAPVAREYGLDYFIATVLLAGIIQVVLSLIGVGRLMRFIPRSVMVGFVNALAILIFTAQIPHLLGVPWLVYPMVAAGIAIMVFFPRLSAAVPAPLIAIVALTALVVLFGWSMPDVSDQGELPGSLPSLFIPDVPWTLETLQIIAPYAFAMALVGLMESMMTAKLVDDITEVRTDKTREGWGQGVANIVTSFFGGMGGCAMIGQTMINVKQSGARTRLSTLLAGVFLLILVVALGDIVGLIPMAALVAVMIMVSVATMDWHSIHPRTLRLMPVSETVVMVVTVAATVITHNLAIGVILGVLTAMVMFARRVAHMTSLEKVSELDSNHDGTIDIRTYRVRGELFWASSNDLVYQFDYTGDPQHVVIDLTDADIWDASTVATLDAITHKYAAKGKTVEIIGLDGSSQERLDKLSGNLGDGH
>CP015453.1|AWH97403.1|2533297_2534560_+|lactate-2-monooxygenase
MYRAGVSGITPKVPTSAEKLEAAARRALMRRPGGRRAWAYVYGGAGSGVTMSGNRDALDRRQLVPRVLRSTDRRDLSTEVLGQRLPAPVLVAPIGAAGLVRRDADVHIGRAAAERGLPYILSSQGSSPMESTADAMKDGPRWFQLYWSRDEQLVDSFISRAEDIGAGALVVTLDTTTLGWRPWDLDLGSLPFTRGVGIAQYTSDPRFSEMVAERVAQDAGAASGTQSDSVKVTPKAVQTLFEMARNHPGGLRRNLSAPETRAAVQTFLDTFSNPALNWDHIATLRDRTRLPVVLKGVLHPEDAQRAFDMGVDAVMVSNHGGRQVDGSIGTLDALVRIRAAVGPEPTLLFDSGIRNGTDVVKAMACGADAVTIGRPHIYGLAIAGQQGVGEVLDNLLAEIDLTMSLCGASSWDEVDASLLA
>CP015453.1|AWH96011.1|2532660_2533101_+|hypothetical-protein
MSTWPEWIPITIVVVLSLLASAGLGSPIASLVLRSAHVPDPPTVEVSGDSRSPVVQRRENSEPQVREVLRGGMWIGILERVGLTAAILAGRFELAAVVVAIKALGRYPEIRENPAVSERFIIGTLTSLLVAAACGAAGLVVLHALA
>CP015453.1|AWH96010.1|2531968_2532664_+|hypothetical-protein
MYVVTIDQRGSRVAEDLVPGLLEALADIPCAAAFERTAGDEVQGLVTDPAAVRSALLVALRGGEWHCGVGAGEVDDDSYASGTRAGRGPAYLAARDAVEAAKGLSSSVAVRVPAGVGAGAGTGTESGAGTGATLAPRSRPGADAAAWAADCEAVWGLTAPLILDRTEAQWRVVDAVDRSHTQAAAALELDITPASVNGALRLSRIREERAAYPALDRLLAGAHAAATGGAR
>CP015453.1|AWH96009.1|2530639_2531869_+|hypothetical-protein
MTTAPERDTVTSPYPTRYREAEDRSRRMGRALKHIARVDQIDEQLMDRLGRGYLEKDEPGARLARAMRLRSGEPGAVSRRQLDEALTSGSAGLPDDAPEVLREYIALLEDTPDWVDWDQIAHGQKVYLRLGQNAADILLQLSLIGGYRFGGPTDLLVATGGLTGNTTLRRLAETSHWTMSLSIPDGLRPGGESWRLTGHVRAMHAVVNEAMEPRWDTGRWGLPISQSDLAATLGLFDAVVLLGVRTLGVPMSRRDSDAVMHVWRYVGWLMGVDDDFLVSRERDRHRINYHILLAQAGLSEAGPQLTQALVAAQRQRKRSGPLPGVQAWVGHERLLSMLTVLLGRESMREFGLPVRPPWAHAYLVTLNGLRYRTPWGRARLDSWGEKVRDRERKQTFGDAAADIGRPVTT
>CP015453.1|AWH96008.1|2530000_2530558_-|TetR-family-transcriptional-regulator
MVERIVEAARVVLVRDGYDSFTTNRVADEARVSPGSLYQYFPDKSALVTEVMDRWSAEISDRVAASLAGAGPVDVQNPGTVRSIADALLTALEVDAGLLRIVWEELPAVRHRAAQHALELRVRELLAVYLSASGVTAGDPAARAWVIVMAVENVAVRWVLDQPRITREALLDEFTALAGGYGPRG
>CP015453.1|AWH96007.1|2529177_2529924_-|hypothetical-protein
MTIRPRRGCAVALSLAAAVVASACSYGPTREAPVAIPPGIPPAAGAPVPAVDINAPGRTSDQLRPWAQGINEQMNIPVAALAAYGNAAETMRQTRPECNLAWTTLAGIGHVETRHGRYRGASLNDDGYALPPIIGIQLDGSPGFANIPDTDGGELDGDQEFDRAVGPMQFIPESWRKYGVDANGDGRADPNQIDDAAVAAARLLCENGGDLSVAENWQRAVLAYNASREYVMDVRDSAAAYSVGTTAP
>CP015453.1|AWH97402.1|2527270_2528941_-|ABC-transporter-permease
MTMWQLCEALVPIAIGVIVDRAIIPLDATAMLWSVLGLIALFTVLSLSYRFGARLSNRALQDEAHDLRVEATRVPLTRRRAMDDASSGDVLSVCSADADVAALVFRQIALGGSALIGIVGISAYLLWTDLLVGLIVLIGVPLSLVLVALPSRVISRHSTAQQTAIGMASSRATDIMTGLRVLKAGGGERWAAEQYRDASRAAADAGIVTAERTGRVQGIGSLGMAVVLALVLLAAGYRVLSGEMAIGTLVSVVGVAVFFEEPVRLITAMVSIFARSHGAAQRLVDLQASAPVDESGSEVPEGSHLQVSGLELPDGRELDLEVAAGEIVALVVEQPAAADAVTLAMAGHSDGADAVLVGGHRRSSLAAAIADHVVVAPHRVDLFVGTIRSNIAMSHDGGGHGSTSDDGGGDGAQHDGEAHVRVPVSDDVLRASAVAEIIEHLPDGLDHVVQEGGRNLSGGQRQRIALARALHADPDVLVLHDPTSAVDAVTEWEIAQAVRRLRTSRPGRSTLIVTSSPPFLATADRVVHLPRSGETHSGTHLELRESSASYRTAVDR
>CP015453.1|AWH97401.1|2525429_2527181_-|ABC-transporter-permease
MTTGTLPLASGRESLAVLWPLLKERRGYLLLVCLTGLVASVAGLVAPWVIGWLVDVLPGSQDYAAVWVGAGAIAAAGIVGAACTWAGQAWLAQLTEPTVARLREMVMDRSLRLGAAQMETTETGDLVSRVAEDAREISQAATAVVPLVVQSLFTVIVSGVGLATVDWRLGLVGLVALPMYWTTLRWYLPRSGPIYAAERAAFGTRASRLLGGITGSRTLHAFDAQDSELDRITGASGRARDLSIRVFYFVTRAFSRNNRAEVTVLGLLLVVGFVLVDAGTLTAGAVTTAALLFHRLFNPIGALVGMVDQVQSAGASLVRMVGVITMPVPERTATLESATDQHGALDLSGVSHSYGGGAPALIDVDLTVAPGEVVAVVGSTGAGKSTLALVAAGSVVPTHGSARMGGVPLADIDPLALRQHITMVSQEVHSFATTIAENVRAPRPEAGLAEVRAALQTVGADWVDDLPDGVDTVIGEGGHPLDPMQAQMIALARVELADPDVVILDEATAEAGSAGARRLDAAAAAVLKDRAGLVVAHRLSQAATADRILVVDHGRIVESGTHEELLRSEGRYAELSRAWFGGV
>CP015453.1|AWH96014.1|2538641_2540360_-|sodium:proline-symporter
MLGSTALSATAVVLLLVLFYGGTMFMSSRIAKRKENADSFMTAGHKIGFGISAASMTATWIWASSMYASVNSGYLYGISGPIHYGFWGALMILFIYPFGKRIRKVAPQAHTLAEVMFARHGRSSQFMLAGSNILGSVISLTSNFIAGGALISMLSPFSFIQGVIVIAAGVLLYTLWSGFRASVLTDFAQVLAMLGAVIIIVPSMFFFLGGVELFTTGAQNLTPQQQSFFSSDAFLNQGAPYIAAVLAYAIGNQTIAQRLFAVREDLIRPTFITATIGYGATIIGIGMVGVLALYAGIDPVDGDPNNVLPQVAAEYLPGVLVAVFFIMIIGSLSSTADSDLSAMSSIAMSDLYGQGMRGRGKVPNPRVMLIVGRITMVLATVAALFFANIRFNILDLLVFVGALWGALVFPVIASFYWKKVTNSAFTVSVLVALAVFLPTRFGLIPDSGVLAYAVEALAVVGVGVVLGLMVFGFLGLRPALVVAVIAALGSAPFILGFLRDYDTLTASLVAYAVSTIVCVAMSYRSSMDYDFDQIALATADYDTDEVAQELADADAQNKAENNNDDDDDVVRV
>CP015453.1|AWH96015.1|2540720_2541596_-|nucleoside-triphosphate-hydrolase
MSETLFSTGAGDRLGGDRLAEAVEVMARIRRDGDWESAQTHASLLPYLLEESWELVDAVADGDRDELVSELGDLLLQVLFHAAIGAERAEGSFDIQDVAAALLDKLRRRAPYWFTPDGSAGVGSAHLDAAEQDRLWQVAKAAERAGRPPRGVVDGIPWDMPALALGQKVLARASSAGVPDELVPAEMRVVRVDPVGLFREHAAGGRDDGSGREDCSGGENDSGREDSPGGGDASGRENGSGREDGTGSGSAEVAYRQVVRSFARDLREAESRLPVPATDATAADWRAAWPS
>CP015453.1|AWH96016.1|2541731_2545409_-|transcription-repair-coupling-factor
MTTTVSSPTTAALSGLAGAVAANPALADLRAGLDRDAAVVRSAESLRPFLVSTLAEHAPLLVVTATERECEELADELAGLFDGPGLPHGAVAQFPSWETLPHERLSPASDTIGRRLQVLNSVMAGQAPRIVVAAARSVVQPISPGAARREPIRLTRGAELDPSDLLATLTEFAYSREDMVARRGDVAVRGGIVDVFPTTADHPLRVEFDGDQIAEIREFSVADQRSLPEGEVGSAVLFPCRELLLDDEVRERAQRLARVHRENPTLAELLDSLAEGIPRDGMEALTSVLVPEEMATLPMLMPAGTRVVVCDPDKVRRRAADLAQAGREFLEASWTAATMGGDAPVDSETLDLSGSGYRTFSTVREEATTAGVPWWQLVPPGFLTDPEDGLVVDAPAGDPPAPRGKDSEMQAMFSRLRTLMSSGGRAAVVVPGHGTVDRVLERLSEAEVPATAAPAGSEPAAGVVSVYEAILHGGFALASDSGEQADHLVVVSETDLTGNRLGATARPKARHAKRRNQVDPLALKAGDWVVHDQHGIGRFVEMVERQVRGGDGSSRREYVVIEYAAGKRGGAADRLFVPMESLGQLSRYVGGEAPTLSKMGGADWQNTKRKARKAVREIATELVQLYAKRQSAPGRAFGPDTPWQREMEDAFPFTETVDQLTAIEEVKGDMEKTAPMDRVVVGDVGYGKTEVAVRAAFKAVQDGTQVAVLVPTTLLAQQHQATFVERMTGFPVTVKGLSRFTSDAEAKEVLKGLADGTVDVVIGTHRLLATAVHWKNLGLVVVDEEQRFGVEHKEHITSLRTHVDVLTMSATPIPRTLEMSLAGIREMSQILTPPEERLPVLTYVGAHSDKHVAAAIRRELLREGQVFYVHNRVRTIDATAARIRDLVPEARVVVAHGQMGEEQLEQTVGGFWNRDYDVLVCTTIVETGLDISNANTLIVDRSDQLGLSQMHQLRGRVGRSRERGYAYFLYDPEKPLTETAYDRLATIAQNNDLGAGMAVAMKDLELRGAGNVLGAEQSGHIAGVGFDLYIRLVGEAVEAYRAIADGETVEVEEEQGEIRIELPVDAYIPVEYVDGDRLRLEAYRKLSQARAPEDIDAVVEELVDRYGPMPVEARRVVSVSRLRLVCQKYKVREVVLAGSRLRVGPLDLLDSQQIRLKRMYPAAQYRATQKTVLLPLPKAAGARAGAGSEKARDDEMLQYAADFLTAMAGDPQGTHPVIQPEMVSA
>CP015453.1|AWH96017.1|2545745_2546270_+|sulfur-reduction-protein-DsrE
MPEFDATITENIATSLTEIPHPSLPKGTNIYGGTKIFPDYKAEEGESYFTLVHGIAHESSVSFVAVLQATRALRKGFESAIYFYGPGAINCLATRGFPTTGDSGFPGEQNINESLESFISEGGTVFCCRFGLGLHGGREEDLIEGVIPAHPLDVQDALIHYARKGAIINSTYMV
>CP015453.1|AWH96018.1|2546274_2547165_+|acyltransferase
MTTIGSVAANFTRDLEENYRTIARYAELARESGVDFLVFPEAAIGGYLSSLGNHGDTVSTAGSLPPAIRLDGPEIARVQEIVGDLVVAIGFCELDDDGVSRYNAAAVLDGHRVYGTYRKVHQPLGENMSYASGGDYRVFDTPVGRVGLQICYDKAFPEAARVMALQGAEIIASLSAWPAARTATAANLQEDRWTYRFNLFDSARALDNQVFWVASNQAGTFGSLRYVGNAKIVDPGGNVLATTTLDEGLAVAEVDVAGTFAAMRAGMFHLRDRRPDVYGSLVEVSDPADERTLASA
>CP015453.1|AWH96019.1|2547546_2548830_+|FAD-dependent-oxidoreductase
MSTTQVSPSTHVPVLVIGGGQAGLSVSHHLGRAGVDHLVVEKQTAVHAWSDTRWDSFTLVTPNWHCQLPGYHYEGPDPDGFMTRDQVVEWLHGWLDTFDPPLAEHTAATRLRRTGTGFEVTLAGPVGERTVTADEVVIATGGYPIPVMPSYAQFLDPRVAQLHSEQYRNPDQLAEGAVLVVGSGQSGAQIAEDLHLAGRRVHLAVGNAPRVARFYRGRDCMTWLADMGLYDTPAQQYPGGKAAQEKTNHYVTGRDGGRDVDLRRFAAEGMRLYGTLTAGEGTELRFDPSLTEALDSADRVYNSICADIDRHIAAHGIDAPPASRYEPVWAPGADPTSLDLAAEGITTIIWAIGYRPDYRWIEASAFDGAGHPMQTRGVTEVPGLSFVGLPWMHTWGSGRFLGIDRDARYLAEGIIARRHTAREERAS
>CP015453.1|AWH96020.1|2548826_2549903_+|radical-SAM-protein
MTTSTTGASTSTRVDLALLGIRGTPPLHRSGGAGPSDDGHLVVSGRDAAIPRNADSPFVFDGDRVLRDGVDTGLEISAIGRPRFYDRQTSDGVPYEKIARLHGRGVLATTVVQTCIRYRRDERCRFCSIEESLRAGTTVPVKQPEQLAEVARAAVDLDGITQMVMTTGTSAGPDRGAAHLARCVRAVKKAVPELPIQVQCEPPADLAVLTDLRDAGADAIGIHVESLDEDARRRWMPGKSTVPLAEYRAAWDEAVRVFGRNQVSTYLLVGLGEDPDEMIAGARELAESGVYPFIVPYRPQSGTLAVDVDGAPAPEQRRVEYISREVGAHLERIGMAGADQRAGCAACGACSVLQSVGG
>CP015453.1|AWH97405.1|2549973_2551389_+|AIR-synthase
MGAESVLGSAAASLLAGGRRAEPGPVVRIAEDPRTVAAYHRLRHEEFVLRQGLFPGSDLDDVDDDTRTVVLVSVAPDGTVLGGVRIAPCAQPDIGWWSGSRLVVADTAHSGGIGPALIRSACAHVEARGVLRFDATVQDRYSPLFTSLGWVDTGAGPVVAGRAHRRMRWPVDRIQRLADSTKSLLSGLLSPFAGQSGGLGATGFRGDDGAPVPGTDLVAACDAILPSMVERDPEWAGWCSVLVNIGDLSAMGADPVGLLDAVAAPTTSHLERIVRGVAAAAAAWGVPVLGGHTQVGVPSALSVTALGRTTRPVPAGGGRVGHTLSLTADLGGSWRPGYHERQWDSSSSRTSEELRLLAGHVAEIAPAAAKDVSMAGIVGTAGMLAEASGTGAQLDVAAIPRPQGASVGAWLTCFPGYAMLTADRGPAPEPAGPAVSAACGRLTAEPGVRLRWPDGEVTVAVAGTVTGFGPA
>CP015453.1|AWH96021.1|2551388_2552261_+|acyltransferase
MPTVTLGALAGNFGRDLPRCVDKAVGIIDAAARDGVDLLVFPHATLGGYLGALRDPSPETLPPALDPDGPELAAIAAAAGDMTLCIGYTEAVDGTRYNTAVCLSGDGVLGVHRKVHQPVDEGIHYGAGDSFRAFDTPVGRLGMLIDYDKTFPESARSLALDGAQVVAALSAWPASVTDRAARLPSDRQSRLFDLYDCARAAENQVFVVASNQTGVMGSLRFLGQAKVVGPGGEVLAATRSKGGLARAEVDIDTELARSRRVLDHLRERRPETYATEPTRSPAPRGGPPCA
>CP015453.1|AWH96022.1|2552251_2553355_+|glycosyl-transferase-family-1
MRIALLTYSTRPRGGVVHTLHLAEALARAGAAVTVYSLARGADAGFFREVDPAVTVRLAPFPDRAGESVTDRIVRSIETLRAFVDPDGFDIVHAQDCISANAVDRCIRTIHHLDDFTTPVLVDCHEKAIASPYAHVCVSRAVASEVQQGWGLAPTVIPNGVDHARFAEAAGPGTAPASARERWRRELFPYVLAVGGIEPRKGSIDLLEAFALTRRTRPDLSLVFAGGETLFDYRDYRARFDRRCAELGIDPVVLGVVAEDDLPSLVAACDVFAFPSTKEGFGLAAMEALAAGRPVVARELPILREVFGSSVEYAASIPELAERLESALVADPARARDGRALAASLTWDAAAVAHLEFYAEHPRGRLP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP015453_1	1.3\|288831\|30\|CP015453\|CRT	288831-288860	30	CP015453.1	289122-289151	0	1.0

1. spacer 1.3|288831|30|CP015453|CRT matches to position: 289122-289151, mismatch: 0, identity: 1.0

gctcgctccgctgtcggcggggtctgacgc	CRISPR spacer
gctcgctccgctgtcggcggggtctgacgc	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP015453_1	1.2\|288786\|24\|CP015453\|CRT	288786-288809	24	NZ_CP020332	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence	164958-164981	3	0.875
CP015453_3	3.1\|1467410\|31\|CP015453\|CRISPRCasFinder	1467410-1467440	31	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	2042618-2042648	5	0.839
CP015453_1	1.3\|288831\|30\|CP015453\|CRT	288831-288860	30	NC_007950	Polaromonas sp. JS666 plasmid 2, complete sequence	6443-6472	6	0.8
CP015453_1	1.3\|288831\|30\|CP015453\|CRT	288831-288860	30	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	464269-464298	6	0.8
CP015453_3	3.1\|1467410\|31\|CP015453\|CRISPRCasFinder	1467410-1467440	31	NZ_CP048424	Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence	231999-232029	7	0.774
CP015453_1	1.3\|288831\|30\|CP015453\|CRT	288831-288860	30	NZ_CP035513	Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence	63728-63757	8	0.733
CP015453_3	3.1\|1467410\|31\|CP015453\|CRISPRCasFinder	1467410-1467440	31	NC_004160	Paracoccus pantotrophus plasmid pWKS1, complete sequence	1537-1567	8	0.742
CP015453_3	3.1\|1467410\|31\|CP015453\|CRISPRCasFinder	1467410-1467440	31	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	236700-236730	8	0.742

1. spacer 1.2|288786|24|CP015453|CRT matches to NZ_CP020332 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence) position: , mismatch: 3, identity: 0.875

tctcgatcccgggtcgctggagcc	CRISPR spacer
tctcgatcccgagacgctggagct	Protospacer
***********.* *********.

2. spacer 3.1|1467410|31|CP015453|CRISPRCasFinder matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 5, identity: 0.839

tcggctgcagggccgcgaggctgcagggccg---	CRISPR spacer
tcgcctgcagggccgcgaggct---gggccttcc	Protospacer
*** ******************   *****

3. spacer 1.3|288831|30|CP015453|CRT matches to NC_007950 (Polaromonas sp. JS666 plasmid 2, complete sequence) position: , mismatch: 6, identity: 0.8

gctcgctccgctgtcggcggggtctgacgc	CRISPR spacer
cctcgcaccgctgtcggcggggtggaccgc	Protospacer
 ***** ****************  . ***

4. spacer 1.3|288831|30|CP015453|CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 6, identity: 0.8

gctcgctccgctgtcggcggggtctgacgc	CRISPR spacer
gctcgctccgccgtcgacggggtagttcgc	Protospacer
***********.****.******    ***

5. spacer 3.1|1467410|31|CP015453|CRISPRCasFinder matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

tcggctgcagggccgcgaggctgcagggccg	CRISPR spacer
ccggctgcagggcggtgaggctgctgatcag	Protospacer
.************ *.******** *. * *

6. spacer 1.3|288831|30|CP015453|CRT matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 8, identity: 0.733

gctcgctccgctgtcggcggggtctgacgc	CRISPR spacer
ccgcgctgcgctgtcggcggggtttgcgaa	Protospacer
 * **** ***************.**  .

7. spacer 3.1|1467410|31|CP015453|CRISPRCasFinder matches to NC_004160 (Paracoccus pantotrophus plasmid pWKS1, complete sequence) position: , mismatch: 8, identity: 0.742

tcggctgcagggccgcgaggctgcagggccg	CRISPR spacer
tcagcttcagggccgcgaggctgggggcgtt	Protospacer
**.*** **************** .**  .

8. spacer 3.1|1467410|31|CP015453|CRISPRCasFinder matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 8, identity: 0.742

tcggctgcagggccgcgaggctgcagggccg	CRISPR spacer
tcggctgcagggccgcgggtctggtcgtgca	Protospacer
*****************.* ***   *  *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1659845 : 1715699

Paenibacillus_phage(20.0%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH95353.1\|1659845_1660289_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
AWH95354.1\|1660285_1661977_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AWH95355.1\|1661973_1662495_-	hypothetical protein	NA	NA	NA	NA
AWH97288.1\|1662553_1662799_+	hypothetical protein	A0A059VGG3	Mycobacterium_phage	5.3e-14	49.4
AWH95356.1\|1662791_1664636_+	hypothetical protein	I4AZM6	Saccharomonospora_phage	2.5e-87	36.5
AWH95357.1\|1664724_1666116_-	RNA polymerase subunit sigma	M4SMP8	Cyanophage	3.1e-42	34.0
AWH95358.1\|1666297_1667143_-	polyphosphate glucokinase	NA	NA	NA	NA
AWH95359.1\|1667304_1668186_+	inositol monophosphatase	NA	NA	NA	NA
AWH95360.1\|1668175_1668814_-	hypothetical protein	NA	NA	NA	NA
AWH95361.1\|1669019_1669322_+	dUTPase	NA	NA	NA	NA
AWH95362.1\|1669326_1669833_-	hypothetical protein	NA	NA	NA	NA
AWH95363.1\|1669886_1670366_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	A0A2L1IVN2	Streptomyces_phage	4.7e-30	49.3
AWH95364.1\|1670444_1671344_+	hypothetical protein	NA	NA	NA	NA
AWH95365.1\|1671370_1671769_+	hypothetical protein	NA	NA	NA	NA
AWH95366.1\|1672705_1673593_-	hypothetical protein	NA	NA	NA	NA
AWH95367.1\|1673771_1674296_-	alkyl hydroperoxide reductase	NA	NA	NA	NA
AWH95368.1\|1674292_1674889_-	alkyl hydroperoxide reductase	NA	NA	NA	NA
AWH95369.1\|1675042_1675978_+	LysR family transcriptional regulator	NA	NA	NA	NA
AWH97289.1\|1675982_1676858_-	hypothetical protein	NA	NA	NA	NA
AWH95370.1\|1676914_1678246_-	RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.9e-18	26.1
AWH95371.1\|1678212_1679685_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	3.4e-31	26.9
AWH95372.1\|1679985_1680750_+	hypothetical protein	NA	NA	NA	NA
AWH95373.1\|1680840_1681257_+	esterase	NA	NA	NA	NA
AWH95374.1\|1681352_1682777_-	NADH dehydrogenase	NA	NA	NA	NA
AWH95375.1\|1683002_1684343_+	cyclopropane fatty acid synthase	NA	NA	NA	NA
AWH95376.1\|1684352_1684832_+	hypothetical protein	NA	NA	NA	NA
AWH95377.1\|1684838_1685318_-	acyl dehydratase	NA	NA	NA	NA
AWH95378.1\|1685461_1686244_+	thioesterase	NA	NA	NA	NA
AWH95379.1\|1686489_1687905_+	hypothetical protein	NA	NA	NA	NA
AWH95380.1\|1687904_1688924_+	hypothetical protein	NA	NA	NA	NA
AWH97290.1\|1688941_1689421_-	acetyltransferase	NA	NA	NA	NA
AWH95381.1\|1690003_1690357_-	cupin	NA	NA	NA	NA
AWH95382.1\|1690610_1691489_+	transporter	NA	NA	NA	NA
AWH95383.1\|1691862_1692429_-	hypothetical protein	NA	NA	NA	NA
AWH97291.1\|1692438_1692933_-	hypothetical protein	NA	NA	NA	NA
AWH95384.1\|1693066_1693849_+	hydrolase	NA	NA	NA	NA
AWH95385.1\|1693908_1694682_-	hypothetical protein	NA	NA	NA	NA
AWH95386.1\|1694698_1695955_-	MFS transporter	NA	NA	NA	NA
AWH97292.1\|1696819_1697200_+	recombinase	A0A1B0V7I5	Salmonella_phage	1.9e-26	51.6
AWH95387.1\|1697435_1697879_+	hypothetical protein	NA	NA	NA	NA
AWH95388.1\|1698133_1699189_-	cytochrome C oxidase assembly protein	NA	NA	NA	NA
AWH95389.1\|1699209_1700790_-	cytochrome BD ubiquinol oxidase subunit I	NA	NA	NA	NA
AWH95390.1\|1700933_1701293_+	transcriptional regulator	NA	NA	NA	NA
AWH95391.1\|1701307_1702141_+	hypothetical protein	NA	NA	NA	NA
AWH95392.1\|1702174_1705579_-	hypothetical protein	W8CYL7	Bacillus_phage	2.7e-10	21.3
AWH95393.1\|1705818_1707015_+	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
AWH95394.1\|1707491_1709081_-\|transposase	transposase	NA	NA	NA	NA
AWH95395.1\|1709194_1709614_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	4.4e-16	39.3
AWH95396.1\|1709738_1710125_+\|transposase	transposase	NA	NA	NA	NA
AWH95397.1\|1710811_1711078_+	hypothetical protein	NA	NA	NA	NA
AWH95398.1\|1711074_1712556_+	copper oxidase	NA	NA	NA	NA
AWH95399.1\|1712621_1713089_+	hypothetical protein	NA	NA	NA	NA
AWH95400.1\|1713115_1713535_+\|transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	8.8e-17	40.2
AWH97293.1\|1713659_1714046_+\|transposase	transposase	NA	NA	NA	NA
AWH95401.1\|1714109_1715699_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP015454

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11544

Enterobacteria_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH97600.1\|452_1511_-	hypothetical protein	NA	NA	NA	NA
AWH97601.1\|2376_3861_-	hypothetical protein	NA	NA	NA	NA
AWH97602.1\|4109_4775_+	hypothetical protein	NA	NA	NA	NA
AWH97603.1\|4861_5566_+	hypothetical protein	NA	NA	NA	NA
AWH97604.1\|5625_6402_+	hypothetical protein	NA	NA	NA	NA
AWH97605.1\|7593_8541_-	hypothetical protein	NA	NA	NA	NA
AWH97606.1\|8728_9295_+	DNA resolvase	A0A1W5LU24	Ralstonia_phage	1.1e-25	41.4
AWH97607.1\|9436_10210_-	AAA family ATPase	U5N3V8	Enterobacteria_phage	6.8e-55	53.3
AWH97618.1\|10206_11544_-\|transposase	transposase	U5N3F9	Enterobacteria_phage	3.9e-18	26.2

DBSCAN-SWA_2

15326 : 22280

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWH97612.1\|15326_16109_+	cobyrinic acid a,c-diamide synthase	V5UP47	Mycobacterium_phage	1.6e-11	30.1
AWH97613.1\|17590_18901_+	hypothetical protein	NA	NA	NA	NA
AWH97619.1\|18929_22280_-	TraA protein	V5UQN3	Mycobacterium_phage	6.4e-25	23.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP015453

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP015454

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection