CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	0 crisprs	RT	0	0
CP015643	Staphylococcus simulans strain MR1 plasmid unnamed1, complete sequence	0 crisprs	csa3,RT	0	1
CP015642	Staphylococcus simulans strain MR1 chromosome, complete genome	2 crisprs	csa3,cas9,cas1,cas2,WYL,DEDDh,cas3,DinG,RT	13	7

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

13375 : 54946

Staphylococcus_phage(66.67%)

integrase,transposase

attL 42641:42700|attR 50266:50327

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI02824.1\|13375_14050_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	3.9e-123	95.1
AWI02825.1\|14194_15139_+	hypothetical protein	NA	NA	NA	NA
AWI02826.1\|15286_15961_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	7.1e-125	96.9
AWI02827.1\|17120_17606_-	lincosamide nucleotidyltransferase Lnu(A)	A0A2K5B286	Erysipelothrix_phage	2.8e-14	31.2
AWI02828.1\|18446_19121_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	7.1e-125	96.9
AWI02829.1\|19155_19506_-	hypothetical protein	NA	NA	NA	NA
AWI02897.1\|19555_19828_-	hypothetical protein	NA	NA	NA	NA
AWI02830.1\|20258_21050_+	cobalamin biosynthesis protein CobQ	A0A0K2FLP4	Brevibacillus_phage	3.6e-19	27.2
AWI02831.1\|21055_21376_+	hypothetical protein	NA	NA	NA	NA
AWI02832.1\|21653_22058_-	hypothetical protein	NA	NA	NA	NA
AWI02833.1\|22183_23071_+	hypothetical protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-40	37.9
AWI02834.1\|23085_24081_+	hypothetical protein	NA	NA	NA	NA
AWI02835.1\|24153_25428_-	hypothetical protein	A0A2H4PQH1	Staphylococcus_phage	7.0e-49	30.7
AWI02836.1\|25424_26357_-	hypothetical protein	NA	NA	NA	NA
AWI02837.1\|26477_27011_+	hypothetical protein	NA	NA	NA	NA
AWI02838.1\|27007_27919_+	hypothetical protein	NA	NA	NA	NA
AWI02839.1\|27918_28524_+	hypothetical protein	NA	NA	NA	NA
AWI02840.1\|28953_29595_-	hypothetical protein	NA	NA	NA	NA
AWI02841.1\|29613_29865_-	transcriptional regulator	NA	NA	NA	NA
AWI02842.1\|32331_32589_+	prevent-host-death protein	NA	NA	NA	NA
AWI02843.1\|32588_32855_+	addiction module protein	NA	NA	NA	NA
AWI02844.1\|33461_34136_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	7.1e-125	96.9
AWI02845.1\|34145_34991_-	replication protein	NA	NA	NA	NA
AWI02846.1\|35529_36075_-	hypothetical protein	NA	NA	NA	NA
AWI02847.1\|36839_37052_-	hypothetical protein	NA	NA	NA	NA
AWI02848.1\|37171_37315_-	Rep protein	NA	NA	NA	NA
AWI02849.1\|37346_38021_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	7.1e-125	96.9
AWI02850.1\|38055_38877_-	hypothetical protein	NA	NA	NA	NA
AWI02851.1\|39326_39893_+	hypothetical protein	NA	NA	NA	NA
AWI02852.1\|41043_41763_-	replication protein	NA	NA	NA	NA
AWI02853.1\|41965_42640_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	1.7e-126	98.2
42641:42700	attL	NA	NA	NA	NA
AWI02854.1\|42914_43343_+	hypothetical protein	NA	NA	NA	NA
AWI02855.1\|43357_43738_+	hypothetical protein	NA	NA	NA	NA
AWI02856.1\|43879_45214_-\|transposase	transposase	A0A1X9I5T2	Streptococcus_phage	8.0e-112	47.2
AWI02857.1\|45341_45542_-	hypothetical protein	NA	NA	NA	NA
AWI02858.1\|45933_46608_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	1.6e-121	94.2
AWI02859.1\|46831_47032_-	cold-shock protein	Q9AZD3	Lactococcus_phage	2.5e-17	61.9
AWI02860.1\|47462_48656_+	sodium/glutamate symporter	NA	NA	NA	NA
AWI02861.1\|49112_49496_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	1.7e-19	49.1
AWI02862.1\|49590_50265_+\|integrase	integrase	A0A0N9RU54	Staphylococcus_phage	6.6e-123	95.1
AWI02863.1\|50614_51172_+	hypothetical protein	A0A0N9SJ02	Staphylococcus_phage	4.3e-27	50.8
50266:50327	attR	NA	NA	NA	NA
AWI02864.1\|51789_52398_+	transposon DNA-invertase	G8I4U3	Mycobacterium_phage	5.0e-13	30.2
AWI02865.1\|52580_52808_+	hypothetical protein	NA	NA	NA	NA
AWI02866.1\|53242_54946_-	ABC transporter	W8CYL7	Bacillus_phage	2.3e-79	35.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP015642

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP015642_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015642_1

505025-505652

orTypeII

Consensus_repeat	Method
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	PILER-CR
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CRISPRCasFinder
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	CRT

9 spacers

cas2,cas1,cas9

The CRISPR arrays of CP015642_1

>merge|CP015642|1|505025-505652|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAACACCAGAAAATATCACGAAAGTAACAAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCTTATGGCGTTTTGTGAAACAGTGCCGAATGGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCACATTATCGCAGTATGTTAGCTGACGAGCGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCGTGAGTGTACACAAAGATGAAGATGACATTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAATCATTCTAACGCCACACAGACACGCCCTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAATCATTCTAACGCCACACAGACACGCCCTGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAAGTTCTTGCATTATGTTCAGAACATCATAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCAAGTTCTTGCATTATGTTCAGAACATCATAGTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTCACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCT

>CP015642|1|1|505025-505586|PILER-CR
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AACACCAGAAAATATCACGAAAGTAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGCGTTTTGTGAAACAGTGCCGAATG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ACATTATCGCAGTATGTTAGCTGACGAGC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	GTGAGTGTACACAAAGATGAAGATGACATT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AATCATTCTAACGCCACACAGACACGCCCT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AATCATTCTAACGCCACACAGACACGCCCT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGTTCTTGCATTATGTTCAGAACATCATA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGTTCTTGCATTATGTTCAGAACATCATA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC

>CP015642|1|1|505025-505586|CRISPRCasFinder
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AACACCAGAAAATATCACGAAAGTAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGCGTTTTGTGAAACAGTGCCGAATG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ACATTATCGCAGTATGTTAGCTGACGAGC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	GTGAGTGTACACAAAGATGAAGATGACATT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AATCATTCTAACGCCACACAGACACGCCCT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AATCATTCTAACGCCACACAGACACGCCCT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGTTCTTGCATTATGTTCAGAACATCATA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGTTCTTGCATTATGTTCAGAACATCATA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC

>CP015642|1|1|505025-505652|CRT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AACACCAGAAAATATCACGAAAGTAACAA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	TTATGGCGTTTTGTGAAACAGTGCCGAATG
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ACATTATCGCAGTATGTTAGCTGACGAGC
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	GTGAGTGTACACAAAGATGAAGATGACATT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AATCATTCTAACGCCACACAGACACGCCCT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AATCATTCTAACGCCACACAGACACGCCCT
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGTTCTTGCATTATGTTCAGAACATCATA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	AAGTTCTTGCATTATGTTCAGAACATCATA
GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC	ACTAACCCAAAAGGAACTTGAACTGCACCT
GTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP015642.1\|AWI02739.1\|505772_506846_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226167
CP015642.1\|AWI00769.1\|512217_512976_+\|lactam-utilization-protein-LamB	unknown	unknown	gnl\|CDD\|235446
CP015642.1\|AWI00756.1\|491946_493368_+\|glucuronate-isomerase	unknown	unknown	gnl\|CDD\|235087
CP015642.1\|AWI00762.1\|502768_503674_+\|subtype-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP015642.1\|AWI00766.1\|509385_510393_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|224895
CP015642.1\|AWI00768.1\|510856_512221_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|236307
CP015642.1\|AWI00772.1\|515997_516177_-\|hypothetical-protein	unknown	unknown	unknown
CP015642.1\|AWI00771.1\|514434_515931_+\|xylulokinase	unknown	unknown	gnl\|CDD\|198374
CP015642.1\|AWI02738.1\|500511_502761_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
CP015642.1\|AWI00767.1\|510395_510839_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	unknown	unknown	gnl\|CDD\|235777
CP015642.1\|AWI00757.1\|493364_494411_+\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
CP015642.1\|AWI00764.1\|504004_504994_+\|hypothetical-protein	unknown	unknown	unknown
CP015642.1\|AWI00763.1\|503685_503994_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP015642.1\|AWI00759.1\|495278_497078_+\|beta-glucuronidase	unknown	unknown	gnl\|CDD\|236657
CP015642.1\|AWI02740.1\|507100_508159_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226167
CP015642.1\|AWI00760.1\|497215_498562_-\|sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|225723
CP015642.1\|AWI00765.1\|508664_509396_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|224960
CP015642.1\|AWI00770.1\|512979_514209_+\|iron-transporter	unknown	unknown	gnl\|CDD\|224826
CP015642.1\|AWI00758.1\|494415_495258_+\|D-mannonate-oxidoreductase	unknown	unknown	gnl\|CDD\|236216
CP015642.1\|AWI00761.1\|498905_499343_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP015642.1\|AWI02739.1\|505772_506846_+\|hypothetical-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	2.86836e-95
CP015642.1\|AWI00769.1\|512217_512976_+\|lactam-utilization-protein-LamB	gnl\|CDD\|235446	PRK05406, PRK05406, 5-oxoprolinase subunit PxpA.	5.91249e-154
CP015642.1\|AWI00756.1\|491946_493368_+\|glucuronate-isomerase	gnl\|CDD\|235087	PRK02925, PRK02925, glucuronate isomerase; Reviewed.	0
CP015642.1\|AWI00762.1\|502768_503674_+\|subtype-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	7.34483e-93
CP015642.1\|AWI00766.1\|509385_510393_+\|allophanate-hydrolase	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	2.84305e-121
CP015642.1\|AWI00768.1\|510856_512221_+\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|236307	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated.	0
CP015642.1\|AWI00771.1\|514434_515931_+\|xylulokinase	gnl\|CDD\|198374	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases. This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	0
CP015642.1\|AWI02738.1\|500511_502761_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	9.32354e-74
CP015642.1\|AWI00767.1\|510395_510839_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	gnl\|CDD\|235777	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein.	8.12324e-35
CP015642.1\|AWI00757.1\|493364_494411_+\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
CP015642.1\|AWI00758.1\|494415_495258_+\|D-mannonate-oxidoreductase	gnl\|CDD\|236216	PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.	3.50236e-161
CP015642.1\|AWI00763.1\|503685_503994_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.62482e-35
CP015642.1\|AWI00759.1\|495278_497078_+\|beta-glucuronidase	gnl\|CDD\|236657	PRK10150, PRK10150, beta-D-glucuronidase; Provisional.	0
CP015642.1\|AWI02740.1\|507100_508159_+\|hypothetical-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	2.30293e-87
CP015642.1\|AWI00760.1\|497215_498562_-\|sulfite-reductase-subunit-alpha	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	7.82722e-100
CP015642.1\|AWI00765.1\|508664_509396_+\|allophanate-hydrolase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	2.0211e-92
CP015642.1\|AWI00770.1\|512979_514209_+\|iron-transporter	gnl\|CDD\|224826	COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism].	2.39716e-80

>CP015642.1|AWI00764.1|504004_504994_+|hypothetical-protein
MYEAVLEISIEELPRVILNTSEYTSIYNEDSTHEEYILETLKNYFQPRNSNKDCVTITNLLECERVSNNRFRGFILNHSAIENEHQLAATSMMTKKIIRKLHNDMEIEGYINSVNVLLDDLRENLRGTLPLAVKSFDLKQFIRLLSFKYDYTEDYARLINRLEQVVPLVVDEMNYQAKEKAFLIYLYPEAGLSIKEQIRFRKTLNDLPIPIIVLTESSYFLSENIKGLNYFINNIQMITEEFIDDSYWNAPINIEIEKFKERFEYLFKKYCSFLEVNPTISNYNLTEIVVFDDLDLYIVIAFLKHCKFNYQLDIDREKISSALSVYLFS
>CP015642.1|AWI00763.1|503685_503994_+|CRISPR-associated-endonuclease-Cas2
MRVMIMFDLPTDTKEERRLYSKFRKGLISEGFLMMQYSIYIKSCINKDSAESSVNYVKRILPPDGHVRALTITEKQYEKMKILLGEEDKNIEILGDNRTILF
>CP015642.1|AWI00762.1|502768_503674_+|subtype-II-CRISPR-associated-endonuclease-Cas1
MAWRIVYLSEVDKLALNLNNLKIAKGDLEVKIPLSDIFAIVIEDLTTTITSRLMIELSKYNILVVFCNQQHLPECMVHPINGHFNQYGQMKEQLQWSEQNKGELWKHILVQKIQNQIQCMKHVGVLDERINKMKQLQTLVTSRDEMNIEGQAAKYYFNTFFEDFRRDDEFLIENMVLNFGYTILNSAIARTIVAKGLIPALGIHHIGARNHFNLASDIIEVFRPLVDLYLLKHPPEEEYMTKAYRLELVNLMHARVRIDGKQHTVIRAIEIMVQSIIEYFRTGRYETLKLPNIKQYSFYES
>CP015642.1|AWI02738.1|500511_502761_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNEEDIKGYRVTSTGKPEFTNFKIYHDIKGITSRKEILDNADLLNQIAEILTIYQSAEDIQEELAELEPKLTQEEIEQISNLTGYTGTHRLSLKAINLILDELWHTSDNQMTIFNRLKLVPKKVDLSQQKEIPTSLVDDFILSPVVKRSFIQSIKVINAIIKKFGLPKDIIIELAREKNSKEVQKFINEMQKRNRQTNERIEKIIKETGKEKAKFLIEKIKLHDMQEGKCLYSLESIPLEDLLNNPYHYEVDHIIPRSVSFDNSFNNKVLVKQEENSKKGNRTPFQYLSSSDAKISYETFKKHILNLSKGKGRVSKKKKEYLLEERDINRFSVQKDFINRNLVDTRYATRELMNLLKSYFRVNDLDVKVKSINGGFTSFLRKKWKFKKERNQGYKHHAEDALVIANADFIFKEWKKLDTTNKVMENQTVEEQQAENMPGIETDDEYKEIFVIPRQIQSIKDFKDYKYSHRVDKKPNRELVNDTLYSTRKDDKGNTLIINNIKGLYDKDNDKLKNLIKKSPEKLLMYHHDPQTYQKLKTIMEQYSNEKNPLYKYHEETGNYLTKYSKKDNGPIIKKVKYYGKKLNAHLDITNDYSNSQNKIVKLSLKPYRFDVYLDNGAYKFVTVKNLDVIKKEGFFKIDSNAYEKAKSEKKIDGNAVFIASFYNNDLIKIDGELYRIIGVNNDSVNRVELNMIDITYKEFLENIDDKRTPRILKTISQKTYSIEKYSADILGNLYKVKSKKKPQMIMKG
>CP015642.1|AWI00761.1|498905_499343_+|hypothetical-protein
MRKIGIFLTTLVAVALIFTGIEDIVKGAEAQAAKAVTGEVVSDELDPDGDGWANIGFENIKLDEPYQTKLVQLTHLKDTGKMSTTEYNEKVAALISEAKSIDTSQSQELPSAGEAEINLVLVIFGLCISLIGMVTVMASRKRKSE
>CP015642.1|AWI00760.1|497215_498562_-|sulfite-reductase-subunit-alpha
MKPNTFNPMQRLHFYAAVFITPLLITLTLSGIAYLFFPEVENQLYKHEFYGQSEHTKQQSMTDAIKQIEKEHPGYTINKVSVMESPYNNRITIGDMEGNSYYIFLDNHNQIVDQQNAKYTYSNMVRSIHSSLSTENTAINYLVELTACWTVFMILSGIYMLVRKKLLKSNNKVLKFQKWHAIVGLIIAIPMLILVFTGLPWSGFMGAKINQISTAYPQLGQTQLVANPPKSEANEIPWALRQKAAPQSEGGGHHGSMAMPMTNIPGQLSLDKVIHNAEKQGLTRPFAIVYPTSPDGSFTLSKASNSGVTGFDVAPEKETTRYMDQYTGKQLGKVDYQDYGILAKWLTWGIPLHEGHLFGMANKIINLLVCIAFLGGIIFGFMSWFRRLKHMKQAEMLPRRVKKPMSISLIITLIILGVLMPLFGFSLIIVFIIETLLYLKDKRNKQLN
>CP015642.1|AWI00759.1|495278_497078_+|beta-glucuronidase
MLYPITTETRNIIDLNGTWKFRLEHANEKLDATQPLDTDLVMSVPGSYNEQGAISEIRNHVGTVFYERDFIVPKALRDERLVLRFGSATHEAIVYIDGEEVVSHKGGFLPFEVDITDKVGAGSHRLTVSVNNILDHSTLPVGNYEEFTDEDGNLIRKNTPNFDFFNYSGLHRPVKIYTTPHKYVEDITVVPKVEGDNATVRYETEVVGDVEEIRVELLDEEGTIVGSATGAQGDIKVENPRLWEPLNAYLYNLKVTLFDNGEVVDTYTERVGIRSVEVKDGQFLINNKPFYFKGFGKHEDTPINGRGYNENANVMDLNLMKWINANSFRTAHYPYSEEMMRLADEQGIVVIDETTAVGVHLNFLVHLGKSNNPIDTWKDIKTKEAHEQVIRELIARDKNHACVVMWSIANEPESDAKGAKEYFEPLVQLARDLDPQDRPMTIVTIMFSQPDNCQVQDLVDVLCLNRYYGWYVDQGDLRAAKASLKKEMDGWSKVQPNKPIMFTEYGADTVAGLHAIDDIMFTEEYQVKYYEANHEIVDQYPQFIGEQTWNFADFETSTGHIRVQGNRKGIFTRDRKPKSVAFYFKERWANIPDFYYKTK
>CP015642.1|AWI00758.1|494415_495258_+|D-mannonate-oxidoreductase
MIPYEIDLNNKTVVVTGGNGVIGSAMSKSLAQVGANIAIIGLNDETGAQVVREIEEAGGKALFISASVTDKAQMEQAKTKIHEALGKVDVLINGAGGNHPKGTTDDEHFDKDNKDQMQTFFELDEASVGFVFDLNFLGTFIPSQVFAQDMIDNKEATIINISSMNAFTPLTKIPAYSGAKAAVSNFTQWLSVYLADTGVRVNAIAPGFLVTSQNEKLLIKEDGSYSARAEKILNATPLHRFGKPEELIGALFFLVDYRSSSFVDGVVLPVDGGFNAYSGV
>CP015642.1|AWI00757.1|493364_494411_+|mannonate-dehydratase
MKMTFRWYGKEDPISLEYIRQIPGMEGIVSAIYDVPVGEVWPLDKIEALKKEIEDAGLELSVIESVPVHEDIKLGRPTRDKYIENYQQTLRNLSKAGIKVVCYNFMPVFDWTRSDLEYRLDDGSTALIYNEDHIKKMDPLSGELALPGWDSSYTKDDLADLFKAYESVDEEKLWENLSYFINKIIPVAEEEDILMAIHPDDPPWNIFGLPRIITNKENLERFINLYDSKSNGLTMCSGSLGCDKNNDFPEMLRYFGKKDRVHFVHARNIKHTGTHSFEESAHPSEKGSLDMYEIVKAMHDFGYEGPVRPDHGRMIWGETGKPGYGLYDRALGATYLIGLYEAVSKGKE
>CP015642.1|AWI00756.1|491946_493368_+|glucuronate-isomerase
MAFINETFMLHNDKAVQLYEDYAKDMPIYDYHCHLDPKQISEDHHFDNITDLWLSGDHYKWRVMRAQGIEEHYITGDADKKEKFVKWAQALQNAVGNPVYHWSQLELAMYFGVYDLLTEDNAEEIYERVNQYLKDNHVTTQSLIKESKVNLICTTDNPTDDLHYHDEIKAQSDFKTAVLPAFRPDAAFKIGSQDFLDFVEKLAEITQPIQSVESFIDSLKQRIDYFHSKGGRLADHGLERIDYEDFTSEEITDIFRKALNKETVSDFEKAQFITFVLNELSKAYADKGWTMQIHFGAIRNNNTRAFEKLGPDTGFDSINDQTNLAYNLNHLLDMMEREDHLPKTILYNLNPNYNDVVGSTIANFQTEPGIASKIQHGAGWWFNDTKRGMLRQMSSLADQGMLMHFVGMLTDSRSFISYARHEYFRRILCTYIGEMVENGEIPDEPSLLEKLIKGICYNNAYHYFGLIKEENNQ
>CP015642.1|AWI02739.1|505772_506846_+|hypothetical-protein
MDHTSPTHPGTKIGPKYFLFNLLNGVAIGIVAGLIPNAILGEILKALVPFNPVFTQLLHITTAIQFAVPCLIGALVAYRFKFTPLGIAVVSAASFIGSGAVVFKHNAWVITGIGDLINTMFAAAIASLMILFIGERFGSLNLIILPTFVAVSTGFIALHTLPYVKLVTTAIGNMVNSFTELQPIPMCILISLVYASIVISPISTAALSMAIGIEGLAAGSASIGIAAVEAVLTIGTLRVNRLGVPMTIFLGGVKMMLPNLVRHPIIFLPITTTAAVTGFVASLIGIGGTKESAGFGIIGLVGPINAFRFLDYGDFWLKAILCAVAFFIVPFIIAFIAHFVYSKIFKIYDEEIFKFID
>CP015642.1|AWI02740.1|507100_508159_+|hypothetical-protein
MTRPGTKVSVGTFFYNVLNGVAFAIIAGLVPHAVLGEILKALSPYSKSAGVLLQVATAIQFTVPMLVGALVAHRFKFTPLGIAVVAAASFIGSGAAQFKNGAWVITGIGDLINTMLAASIASLLILFIGERFGSLNLIILPTFVAVITGFITLHTLPYVKLVTTGIGHIINTFTEMQPVLMCMLIAIAYSMIIISPISTVATSMAIGISGLAAGAASIGITAAEATLVFGTITVNRLGVPATILLGGVKMMLPNMVKYPVMLVPITVTAAISGFVASFIGIGGTKESAGFGIIGMVGPINAFRFMHVDEVWLKLVLIITAFFVVPFTVAYIAHFIFIKIFKLYDKEIFRFLG
>CP015642.1|AWI00765.1|508664_509396_+|allophanate-hydrolase
MDYQIISEQAILVRFEPQIAPETFKKVQQLVVYLERQDHEAIKEIVPSYRAVMIHFDDHKIHAKALIENLKLDTLDVSDIETSESSKVVRIPVIYGGKYGPDIEEVAKLNDLTVEDVIQLHTEPTYLIYMLGFMPGFPYLGGLDERLYTPRRDEPRVRIDAGSVGIAKNQTGLYPQDSPGGWQIIGRTPLDVFDLDREPMTLYEAGDRIEFYQISQDTYDEIIAQKNDPDFDIERWVTVQDEH
>CP015642.1|AWI00766.1|509385_510393_+|allophanate-hydrolase
MSIRIIKPGLFSTIQDIGRYGYQKEGFSSAGALDRYSYRLGTQLIGNEGPAIEATIIGPTLQFLEDNTVVITGAEFKATLNGEPISHQTVVQVYKGDVLALNAAIKGARGYLHFGHPIDVPEVAGSYATHTRTKMGGFHGRALRKDDMIPVHYNNDYRRHVGYTSDLDLIHEGTDAIRVVEGPQYDSFPDASHEALVSEPFEISEQSDRMGFRLKGASIPPTDSADIISEPVALGSVQVPNDGNPIVLMNDKQTVGGYTKIATVCQSDLSVLAQKQPGQKVNFEWVTVEEAIQHLDDYNKGFEASLEAIEKEPLFDMREMRTTSKRISELLEGDE
>CP015642.1|AWI00767.1|510395_510839_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit
MKLEEIKDLINLVKENKVNKFKYKDEAHEIELDFSSPQQTQPATQIQNQATSNPAPEAAQEPQADNQASGETVNAPMVGTFFLQDTKELTEPIVKVGDKIKKGDVIGYIEAMKVMNEVTSEVEGEVTDILVDHGTNVEYDQALIEVK
>CP015642.1|AWI00768.1|510856_512221_+|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MYRCLIANRGEIAVRIIRACREVGVETVAVYAKGDEKSLHVSLADQAICIGEANPLDSYLNINRIIAAAEITGANAIHPGYGFLSESPNFAQKVEENDIYFIGPTKRTMEMMGDKITARQTVESADVPIIPGSIGAVHSVDEIKEIAKDIGYPVVLKAASGGGGKGIRIVKEPEHLEKAFKEAQSEGKKYFDDDRIYVEAFIPVAKHVEVQVIGDGKENYVHLGERDCSVQRKNQKLIEESPCAALSEEKRQKICEDAVKVAQASNYRSAGTIEFLVTDDAYYFIEMNARIQVEHTVTEMRADRDLLQAQLYLMKHGELPFSQDDIHFTGHVIEARINAENPERKFQPSPGKVKALHLPQGFNVRVDSLLYPGYVVSPYYDSLVAKVIVKGANRTHAIEKLKATLDEMVIDGFSTTADFLYAVLSYPAYADGDAKDVDIKFLDRHQITKGAALT
>CP015642.1|AWI00769.1|512217_512976_+|lactam-utilization-protein-LamB
MKIDLNCDLGEAFGNYSFGGDHQIIPLITSANIACGFHAGDENVMYETVKLAKENGVGIGAHPGFHDIQGFGRRNMDLSPDEIYTLVAYQIGALSAFCRIHDVKINHVKPHGALYNMGARDKDIAHAIAQAVYDVDPSLILVGLSNTLLVSEAEAVGLKAANEVFADRRYEENGQLVSRKEADAVLTDTDEAIEQVVKMVKENKVIAKTGKEIELKADTICVHGDGAHALEFVSKIRERLTKEGISITKLGG
>CP015642.1|AWI00770.1|512979_514209_+|iron-transporter
MGENKQNKPEFQFTKEHKRLLLGSVFLMATSAIGPAFLTQTAVFTQQFAASFAFAILLSIIIDIGAQINIWRILVVTGLRGQEIANKMVKGLGTFISILVAIGGLAFNIGNVAGAGLGLNAIFGIDVKWGAAITAILAIGVFISKSGQKVMDFVTMILGVMMIGITAYVMVKSNPPYLEAAEKMVMPEHPGALVLPIITLIGGTVGGYITFAGAHRILDSGIKGKDYLPFVNHSAIAGILTTGVMRGLLFLAVLGVVVTGVTLNPENPPASVFEHALGPIGKNIFGIVLFAAALSSVIGSAYTSATFLKTLSKSLMKRSNIIVIVFIVVSTITFLLIGKPVKLLIIAGALNGLILPITLGVILIASKKKSIVGDYKHPTWMLMFGVLAVLVTIVTGFLSFQGLADLWNS
>CP015642.1|AWI00771.1|514434_515931_+|xylulokinase
MTTEAVIGIDLGTSAIKLIAVDRLGNVLGTQSEPLKLYHDYPGYSEQAPEEWVAAAVNGLHHLLAQPVLSDVSIEGLSFSGQMHGLVIVDQAGQPLRRAILWNDTRTTPQCEQIKVKYGDQVLGNPVVEGFTLTKLLWVQQHEPDLFKQIDTFMLPKDYLRFALTGVLHTEYSDAAATMLLNPQTKAWDKALGASFDIPDHIYPDLVESHAQVGVLKAELQQQLSLNKPVPVFAGGADNACAALGSGVIHPDDAICSIGTSGVLLICEPVGESEGYGHKIHLMNHAVPDVNYLMGVTLSAGYSLSWFKREFYPEDDFTTLMKDAEASQIGAHGLIFTPYLVGERTPHGDASIRGSFIGITGNHTRGDFGRAVVEGITYSLYDSLVYLRSIGRNVTKIVSTGGGAKSDFWLQLQANVFNTEIYKLKHEEGPSMGAAMLAAYSLSWYDSLKDCAEAFIHYSKVFQPDLKRHQTYEAYFEIYQQAYQATRHLTSDLLALQK
>CP015642.1|AWI00772.1|515997_516177_-|hypothetical-protein
MSFKEYVEDVVETIKHMRFGSKNGIIMIVSAIVLSAITTPIIGLPLGAWIGYYLEKNGK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP015642_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015642_2

1822921-1823545

orTypeII

Consensus_repeat	Method
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	CRISPRCasFinder
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	CRT
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	PILER-CR

9 spacers

cas2,cas1,cas9

The CRISPR arrays of CP015642_2

>merge|CP015642|2|1822921-1823545|CRISPRCasFinder,CRT,PILER-CR
TGTTTAAATCATTCTAAAAGATCACAATTCTAAAACTTTAAGAGCATGTAGCTATGATTTGGATAGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACACGATAGTTATTAAACGATAGTTATTAAAGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACAAAGGCTTAAATGGTTCTCAAATCATCTCAGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACCCCACAACGCCAGCATTGCCGTTTTCTTTTGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACAAAACCCTACGAATGTGTTGATAACGTTTGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACACACCAACAATTTTTCCGACTTCCTCCAACGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACTTTTTCTGCCCTTTTTTATAATTTAATTGGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACCTGATGTTTCGTCATTGCTTGTCTTGCTGCGTTTTACTTCATTCTAAAAGATCACAATTCTAAAACTTAATCGTCGTTTTATTATTTATTAAACAGTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC

>CP015642|2|2|1822921-1823545|CRISPRCasFinder
TGTTTAAATCATTCTAAAAGATCACAATTCTAAAAC	TTTAAGAGCATGTAGCTATGATTTGGATA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	ACGATAGTTATTAAACGATAGTTATTAAA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	AAAGGCTTAAATGGTTCTCAAATCATCTCA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	CCCACAACGCCAGCATTGCCGTTTTCTTTT
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	AAAACCCTACGAATGTGTTGATAACGTTT
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	ACACCAACAATTTTTCCGACTTCCTCCAAC
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	TTTTTCTGCCCTTTTTTATAATTTAATTG
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	CTGATGTTTCGTCATTGCTTGTCTTGCTGC
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	TTAATCGTCGTTTTATTATTTATTAAACA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC

>CP015642|2|2|1822921-1823545|CRT
TGTTTAAATCATTCTAAAAGATCACAATTCTAAAAC	TTTAAGAGCATGTAGCTATGATTTGGATA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	ACGATAGTTATTAAACGATAGTTATTAAA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	AAAGGCTTAAATGGTTCTCAAATCATCTCA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	CCCACAACGCCAGCATTGCCGTTTTCTTTT
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	AAAACCCTACGAATGTGTTGATAACGTTT
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	ACACCAACAATTTTTCCGACTTCCTCCAAC
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	TTTTTCTGCCCTTTTTTATAATTTAATTG
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	CTGATGTTTCGTCATTGCTTGTCTTGCTGC
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC	TTAATCGTCGTTTTATTATTTATTAAACA
GTTTTACTTCATTCTAAAAGATCACAATTCTAAAAC

>CP015642|2|2|1822923-1823545|PILER-CR
TTTAAATCATTCTAAAAGATCACAATTCTAAAACTT	TAAGAGCATGTAGCTATGATTTGGATAGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACAC	GATAGTTATTAAACGATAGTTATTAAAGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACAA	AGGCTTAAATGGTTCTCAAATCATCTCAGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACCC	CACAACGCCAGCATTGCCGTTTTCTTTTGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACAA	AACCCTACGAATGTGTTGATAACGTTTGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACAC	ACCAACAATTTTTCCGACTTCCTCCAACGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACTT	TTTCTGCCCTTTTTTATAATTTAATTGGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACCT	GATGTTTCGTCATTGCTTGTCTTGCTGCGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAACTT	AATCGTCGTTTTATTATTTATTAAACAGT
TTTACTTCATTCTAAAAGATCACAATTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP015642.1\|AWI01993.1\|1832357_1832840_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
CP015642.1\|AWI01990.1\|1825651_1829686_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
CP015642.1\|AWI01994.1\|1832969_1833455_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226451
CP015642.1\|AWI01986.1\|1820476_1821778_-\|uracil-permease	unknown	unknown	gnl\|CDD\|236744
CP015642.1\|AWI01983.1\|1817172_1818273_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP015642.1\|AWI01987.1\|1821999_1822527_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235365
CP015642.1\|AWI01980.1\|1812270_1813188_-\|dihydroorotate-dehydrogenase-B-catalytic-subunit	unknown	unknown	gnl\|CDD\|235982
CP015642.1\|AWI01985.1\|1819537_1820446_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|234849
CP015642.1\|AWI01988.1\|1823595_1824447_-\|hypothetical-protein	unknown	unknown	unknown
CP015642.1\|AWI01979.1\|1811566_1812271_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
CP015642.1\|AWI01996.1\|1834434_1837182_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
CP015642.1\|AWI01981.1\|1813184_1813949_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
CP015642.1\|AWI01991.1\|1830046_1831363_+\|transposase	unknown	unknown	gnl\|CDD\|225995
CP015642.1\|AWI01992.1\|1831427_1832345_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
CP015642.1\|AWI01989.1\|1824786_1825662_-\|subtype-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP015642.1\|AWI01978.1\|1810953_1811565_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
CP015642.1\|AWI01984.1\|1818279_1819551_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
CP015642.1\|AWI02772.1\|1824443_1824752_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP015642.1\|AWI01995.1\|1833461_1834256_-\|glyoxalase	unknown	unknown	gnl\|CDD\|225312
CP015642.1\|AWI01982.1\|1814006_1817180_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393

Protein	Function_ID	Function_description	E-value
CP015642.1\|AWI01993.1\|1832357_1832840_-\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.37287e-51
CP015642.1\|AWI01990.1\|1825651_1829686_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.91047e-107
CP015642.1\|AWI01994.1\|1832969_1833455_-\|hypothetical-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	9.18985e-30
CP015642.1\|AWI01986.1\|1820476_1821778_-\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	7.17605e-143
CP015642.1\|AWI01983.1\|1817172_1818273_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP015642.1\|AWI01987.1\|1821999_1822527_-\|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase	gnl\|CDD\|235365	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR.	1.72282e-88
CP015642.1\|AWI01980.1\|1812270_1813188_-\|dihydroorotate-dehydrogenase-B-catalytic-subunit	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	6.45178e-174
CP015642.1\|AWI01985.1\|1819537_1820446_-\|aspartate-carbamoyltransferase	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.56537e-169
CP015642.1\|AWI01979.1\|1811566_1812271_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	1.78708e-129
CP015642.1\|AWI01996.1\|1834434_1837182_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
CP015642.1\|AWI01981.1\|1813184_1813949_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	3.691e-122
CP015642.1\|AWI01991.1\|1830046_1831363_+\|transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.93462e-66
CP015642.1\|AWI01992.1\|1831427_1832345_-\|pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	6.39179e-124
CP015642.1\|AWI01989.1\|1824786_1825662_-\|subtype-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.23461e-92
CP015642.1\|AWI01978.1\|1810953_1811565_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	4.78352e-77
CP015642.1\|AWI01984.1\|1818279_1819551_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
CP015642.1\|AWI01982.1\|1814006_1817180_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP015642.1\|AWI01995.1\|1833461_1834256_-\|glyoxalase	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	4.78216e-79
CP015642.1\|AWI02772.1\|1824443_1824752_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	5.44995e-28

>CP015642.1|AWI01987.1|1821999_1822527_-|bifunctional-pyr-operon-transcriptional-regulator/uracil-phosphoribosyltransferase
MTERIVLDDAGMQRTLTRIAHEILEYNKGTENLVLLGVKTRGEFLAKRIQTKIQQIEDVSVPTGTLDITQFRDDLELPTPKMSEKSYVIDVDLKDKVVIIIDDVLYTGRTVRASLDAILLHSRPQKIGLATLVDRGHRELPIRADFVGKNIPTAKDEEVLVYVDETDGRNAVIIE
>CP015642.1|AWI01986.1|1820476_1821778_-|uracil-permease
MENEQMFERTVKPVLDVNEKPKAGQWAFLSLQHLFAMFGATVLVPFLTGLPISAALLASGIGTLLYILITKSMIPAYLGSSFAFITPIITGLSTHSLGDMLVALFMSGVMYVIIGILIKLSGIGWLMHLLPPVVVGPVIMVIGLSLAPTAANMAMFENTADMKGYNVTYLIVAMITLITTLVVQGYMKGFFSLIPVLIGIIVGYIAGIIFGIVDFKPVMKASWFDWPHIYVPFVDYHPSFHFGLVLLMVPIVFVTVSEHIGHQMVINKIVGRNFFEKPGLHRSIIGDGVSTMFASIIGGPPSTTYGENIGVLAITKIYSIYVIGGAAVIAIILAFVGKFTALISSIPTPVMGGVSILLFGIIASSGLRMLVESKVDFSENRNLVIASVILVVGIGNLMFDIHGVKVEGMALASLSGIVLNLILPKVKPETSNK
>CP015642.1|AWI01985.1|1819537_1820446_-|aspartate-carbamoyltransferase
MKQLVSMEHLSNEEIYSLIETAIEYKQGKKVHKLNDTYVANLFFENSTRTKCSFEMAERRLGMQEIPFETSTSSVKKGESLYDTCKTLESIGVDALVIRHPQNDYYKELEGLNIPVINGGDGSGQHPTQSLLDIMTIYEEYKKFKGLNVLICGDIKNSRVARSNYQALTALGANVKFAAPDEWVDDTLDAPYVKIDDVIEETDIVMLLRVQHERHDGELNFDPHEYHEKYGLTKERYNRMKPNAIVMHPAPVNRGVEIDTELVEAPKARIFKQMKNGMFLRMSVISHIIAEQQKGVLIDVAN
>CP015642.1|AWI01984.1|1818279_1819551_-|dihydroorotase
MLLIKNAKVLKDGKLTEASILVEDDKVKEIAPEITVGSEVEVIDAKGRFAAPGLVDVHVHLREPGGEHKETIETGTKAAARGGFTTVCPMPNTRPVPDTVEHLEKLNKLIEDNARVRVLPYASITIRQAGSELVDFKGLAEHGAFAFTDDGVGVQTAGTMYEAMQQAAKLNKAVVAHCEDNSLIYGGAMHEGKRSKELGIPGIPNICEAVQIARDVLLAEAADCHYHVCHVSTKESVRAIRDAKAAGIKVTAEVTPHHLLMTEDDVPGDNAMYKMNPPLRSKEDRDALIEGLLDGTIDCIATDHAPHAADEKAQPMTKAPFGIVGSETAFPLLYTHFVKNGDWSLQQLVDYLTIKPAQIFDLPYGILEEGKTADLTLINLEEEREIKAEDFHSKASNTPFIGYKVYGNPVLTMVAGEVAFKEE
>CP015642.1|AWI01983.1|1817172_1818273_-|carbamoyl-phosphate-synthase-small-subunit
MLEKRYLVFEDGSIYEGRKLGSDNLTKGEIVFNTAMTGYQETISDPSYTGQIITFTYPLIGNYGINRDDFESLVPTLSGVVVKEASTHPSNFRQQKTFNDVLVQYDIPGISGVDTRSITRKIREHGVLKAGFTDHAEDIPSFIEELKQFELSRDEVPMVSTKTPYVSTGSDLSVVLVDFGKKQNIVRELNARGCNVTVVPYNTPAEIILGMSPDGVMLSNGPGDPEDVPEAVEMIQGILGKIPFFGICLGHQLFALSQGAEAFKMKFGHRGANHPVKDLATGKIALTSQNHGYAIDEASVAHTDLEVTHIALNDGTVEGLKHKTLPAFSVQYHPEACPGPTDSNYLFDQFIDMMNEFKAKEHTVNA
>CP015642.1|AWI01982.1|1814006_1817180_-|carbamoyl-phosphate-synthase-large-subunit
MPRNNDIKTILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVRLLGTKLSSIQQAEDRELFRSLMNDLDVPVPESDIVHTVEQAFAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVTNGLHYSPATQCLIEKSIAGFKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPYSMNYYIIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMLNPVTGTSYAAFEPALDYVISKIPRFPFDKFEKGERVLGTQMKATGEVMAIGRTYEESLLKAIRSLEYGVHHLGLPNGESYDLDYIKERILQQDDERLFFIGEAIRRGTTLEEIHEMTKIDYFFLNKFQHIIDIERELKAHKGDIEYLKYAKDYGFSDKVIAHRFDMEEADVYRLRHENDIKPVYKMVDTCAAEFESATPYYYGTYERDNESIATDKEKVIVLGSGPIRIGQGVEFDYATVHAVWAIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIIELEQPKGVVVQFGGQTAINLAEKLAKHGVQILGTSLENLNRAEDRKEFEELLNTIDVPQPKGKTATSPAEALDNAREIGYPVVVRPSYVLGGRAMEIVYNDAELENYMREAVKASPEHPVLVDRYLTGKEIEVDAISDGETVIIPGIMEHIERAGVHSGDSIAVYPPQTLSDEVIQTLEAYTTKLAKGLDIIGLINIQFVLAHDGVYVLEVNPRSSRTVPFLSKITDIPMAQLAMRAILGEKLSELGYKPGLQPYSEGVYVKAPVFSFNKLKNVDITLGPEMKSTGEVMGKDLTLEKALFKGLTASGVEVKDHGTVLITVSDKDKEEMVKIEKRLHEVGYKVLATSGTAAKLAENHIPVETVGKIGGEDDLLNRIQNGDVQIVINTMTKGKTIERDGFQIRRASVENGVPCLTSLDTANALTNVIESMTFTMRSM
>CP015642.1|AWI01981.1|1813184_1813949_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MEQNIIVSNREIADRIFEIKVKGPVTRKMTQPGQFVHIKVGEGSLHMLRRPISICHIEPEIETFTMLYRAEGAGTQRLSQMRENDAIDIIAPLGNGFPVEKAERKALLVGGGIGVPPLYELSKQLNRQGIETVHVLGFRSKKDVFYADEFAQLGETHIVTEDGTMGAKGFVTNVISELPVDYDIYYTCGPKPMLKAIKEHDKLADVEGFLSLEERMGCGIGACYACVCHTPESETSYVKVCTDGPVFEKGAVIL
>CP015642.1|AWI01980.1|1812270_1813188_-|dihydroorotate-dehydrogenase-B-catalytic-subunit
MSRLNVEIPGLELKNPIMPASGCFAFGAEFSQFYDLSELGAIMIKAATKEARYGNETPRVAETDSGMINAIGLQNPGVHHIIEHELKKLEQFDVPIIANVAGSTEEDYVYVAEHISKAPNVKALELNISCPNVKEGGMQFGVDPVVAAELTRKVKAVSEVPVYVKLSPNVTDIVAMAKAIAQYADGLTMINTLVGLRIDAKTGRPIIANTVGGLSGPAIKPVAMRMVYQVRQAVDIPIIAMGGVQNAQDVIDYISVGANAVAVGTANFQNPMVCKEIIDELPALLDDLGVNHINELYKRTFEVTK
>CP015642.1|AWI01979.1|1811566_1812271_-|orotidine-5'-phosphate-decarboxylase
MANRNLPLPIIALDFATAEEVENFLDLFDEPLYIKIGMELYYQTGPELINKIKARGHQIFLDLKLHDIPNTVKQAMAGLGRLNVDLVNVHAAGGTEMMRQAVEGLRSVNKDTKIIAVTQLTSTTEEMLQKEQNIQTSIEEAVLNYARLTKEAGLDGVVCSPLEAELLTKELGSDFLKVTPGIRPAHYAQDDQKRITTPDKAREMGSTHIVVGRPITQSDNPVESYHHIKESWLG
>CP015642.1|AWI01978.1|1810953_1811565_-|orotate-phosphoribosyltransferase
MSKQIAQSLLDIGAVALSPNDLFTWSSGIKSPIYCDNRVTLGYPEVRNAIRDGLIELIQTHFKDAEIVSGTATAGIPHAAFISEKLDMPMSYVRSKSKSHGKQNQIEGAPSKGKKIVVVEDLISTGGSSLVAAEALREAGAEVLGVVAIFTYGLAKADQMFKDADIPFYTLSDYNELIDVAKEQGKISESDIQSLVEWRDNLA
>CP015642.1|AWI01988.1|1823595_1824447_-|hypothetical-protein
MKLVGEFNKPIEIAKQRLNVISFQNTSKLNALTEGLIKYSQSKSKNYDENVRLVADDYQTILPNKVNLIIVPCGDINLFDSKIFKEALYHRFEQQIFNEETTNLLYNKVESMIESFLNSLEIKNESYQVDFQSPNIVLKKLLGMFKPDFHNDLEDLNAIEQRKLFIDTLTSTEKENVLVLLFPEAHLGLSDMKAFKKYLQTLNMFSIIVTSHPYFIIESDTLALIKMNGEPVNTKQIREELLLFKEKEKITDLDKTSKMIAYHEFCQHPYLDDEFFIQFMNKY
>CP015642.1|AWI02772.1|1824443_1824752_-|CRISPR-associated-endonuclease-Cas2
MRLFIMFDLPVETSRERREYRKFVKFLLNEGYVRSQYSIYCKLILNRGTLNHQISKLKQNLPAHGIVQSLIVTEKQFSDMTYLVGEPRTKYDVNTTERILEL
>CP015642.1|AWI01989.1|1824786_1825662_-|subtype-II-CRISPR-associated-endonuclease-Cas1
MSFRTVIITKESKLSLRMNHLIVKADELYKIPLQEILCLVIENPSVSITGHLLNALSENKIITLLCDKKHLPSSFVVPIYGHHKQSRHIAKQLNWNKEYKSLLWQRIIKNKIAKQKQVIQYFYRNIDTSFFDNCVHETKLNDSTNREGLAAKSYFNIILDSGVSRNSDEFVNGGLDYGYQVLLAVFVRTIVSKGYLTEIGIKHKNEFNPFNLACDFMEVFRPMVDFLVLQNVYDKFEKEEKRAILNMFNEKVKLNKKNYFLVNAIEIYLDGIFKFLESGDINFIKMPVFNF
>CP015642.1|AWI01990.1|1825651_1829686_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKKTNPYILSLDIGTASIGYACMDLDFNILKYHDKDAIGVLTFEGADTAAERRGFRTSRRSKNRRIKRLGLLQEVLAPLVKNPNFYQLLNLHKWKNSNEDFKHRSLSEVLKALGKNPKAYPTIYHLQQDIQNHPEKKFEPELIFLALYHLVKYRGHFLFNNLSFDKGKTVDNEAQLSELLEQYQSINSYEDAISNKDIKVIVDTLKDDQLTRNDKSKELKRNVSKTHAELFKMLVGLKFKQSILFENMENVEDIKESATGSDAISLSDDYYENLSEFLTDEQLNFIESANTFFMGIMLDRILKGATSISAAKVRDYKIFKNQLKLIKDIVYQNKYDKYHEFFVTSKEDMRAYQENPDAKNFGKLSKFDQYLIHPKDQYAKLMKDLKGLVPKEYTEVLNLIDEQKFLVVQNTTDNASIPYQNNVFEAENILRNQQKYYPEITEEMIGKVINLISFRIPYYVGPLTNKNGQSDFAWVIRKSDEQTLPWNFDKVIDKSKSAEKFIRRMTSKCTYLLEEDVLPKHSLLYQEMEVLNELNNVQLRGENEPKHRIHRLDPKVKQFIYHNLFQKKKNVTHKDLITLLQNSEHRNTLNKTSGQKLKVFGTQNDSKFAPKLSTYNDMKAILGSVENKRQMIEELVLWITIFEDKAILKQKIGEKYPNITEKQLNQIVKLNYSGWGRLSEKLLNKEVNGRSLIDLMYSTENNFMEIITDKTLGFDCFIKNSNKVKNAKISYKDVAELRTSPALKKGIWNAIKMVREISNLFGAPEKIIIEFATEDQAKGKRQKSRSELWDDLVKKNNLKRNKEFEGLFEELKAYPDLDFSNPKLWLYIHQNGKCMYTKKPIDLERLMSDTNNQLYEIDHILPRTFVKDDSINNKVLVIQSANQKKSGDKMPLEIFDNHVLVPFWKMLYENDLISSSKLSKLMKKEFNDLDKEGFIQRQLVETRQIISHVSDFLTEEYPSTTVVPMKANVVSELRRKFDIPKIRQLNDWHHAVDAYLNGFVYQAARVFYPKVNLFEFNFKWEKVREKWRQLGEFTENNKKREFFLFKRMENYVNEYGEGMISKLIFDLDNFKFNYSRKVESTESAFYKQSAFSPKNTTAQYDSDKNKTAIYKEMKNKRGIVVSYTYVKKDQELIGYGVFNETVFEYVNNADVDMNTRALKIVRKAFPKLDIKKAQYLFSINKGDALLVNGHPFLFVSAYERINGKQLEFDIAMQRKIKQALSPYNNMTEQEKVEFYNQFAEKVIEEFRNSIGLQSRDRKVNLIKNLFNNTEKSNDSMTQSILEVLKMTKVSAERSKELKIRWNGQTPNTFIDTKNNAEIQYKSITGLKTTKPKSIFKLAESKNEL
>CP015642.1|AWI01991.1|1830046_1831363_+|transposase
MSNTISITLGIKDKNITFEDKVEERKYKGKNSLFYFGKLIHSPKRCKLCGHENTNFSIIKNGLKKSCLTIPKVSEKPAYLILEKQRFHCKKCCSYFTAETPVVERNCYISQNTRLAVLNKSIDIRSQKSVAESCHVSNSTVTRIINKAASQIAQTPFKYLPEHLMMDEFKSVKNVVGKMSFIYADAVTHRIIDIVPDRRLFALKNYFYRYPLSERKRVKTVSIDMYEPYMALIREVFPNAKILIDRFHIVQSLNRALNMTRVTVMNSFRTTERPLYNKYKRYWKILLKPYEQLEAFAYSKMPLYKQWKTPKGVVEHLLSFDERLLNTHTLVNELRSTLKENNKAAFETALKNIEINSVAPKLQTAVKTLRKHNSMIRNTFEYSNLTNGPLEVINTKIKLIQRISFGYRNFGNLRSRIILCTNLFAANPKKEIKQLYAA
>CP015642.1|AWI01992.1|1831427_1832345_-|pseudouridine-synthase
MSQFDFQITEDEHVGQRIDKFLPEQNSDWSRSQIQDWIKEGLVEVNQKVVKANYKMKKNDQVQVTEKETVEADIQPENLDLDIYYEDEDVAIVYKPKGMVVHPSPGHYSGTLVNGLMYQIKDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDIAHRGLVEQLMDKTVTRKYTALVHGNIPHDYGTIDAPIGRNKVDRQAMDVVDDGKDAITHFNVLEHFNNYTLVECELETGRTHQIRVHMKYIGYPLVGDPKYGPKKTMDIGGQALHAGVIGFTHPVTGEYIERKAPLPDYFEEILEDIRTRDA
>CP015642.1|AWI01993.1|1832357_1832840_-|signal-peptidase-II
MRKSYFIGATLFVTLAVLILDQFTKAYIVKTMSVGDSYSVIPGFLNITSHRNTGAAWGILSGKMGFFFLVTIIVLGLLTYFYVKEARGHFWMQMAISLLFAGALGNFIDRMKNGEVVDFIDTYIFGYDFPIFNVADSSLTVGVILILILLLFDSKKNKVK
>CP015642.1|AWI01994.1|1832969_1833455_-|hypothetical-protein
MKKLISAGVMLVVLGGATYVAVDHQDEIEHYIEQMKPDPMAFNPYDDGECTDYVFEKVKDDGNMIGKSWGDAKYWADKAEEAGYTVNQQPKASSLLQSPRGEEGHVAYIEHVNDDGSLYVTEMNYVAPQKVTSRTIQPQQVQNYHYIHPKENPKTQDTKEA
>CP015642.1|AWI01995.1|1833461_1834256_-|glyoxalase
MRQLGEKHYVNGVTLNVRDKENLKHFYEEILGFNVINETYTSIQYEVGDSKHRITLHQIDDGREPLVSEAGLFHIGIRLGSHAHLADLMAHLTEHEIPLNGAEHNVSTSLYFTDPEGNGFEFYADQPEETWDFDKENRVIMDTRHLYASKLMNLRSRDGWQGIPDDSMIGNLHLKTVRISEVKDYYLAHFGLEESSFVNKSSLFMSSNGYHHTLAVNHWMSSMQRMENDDTYGLTLVDFHYPETTHTWLKGPDGIAFRFNYLGV
>CP015642.1|AWI01996.1|1834434_1837182_-|isoleucine--tRNA-ligase
MNYKETLLMPKTDFPMRGGLPKKEPEIQKQWDEQDLYHKILEKNKGNETYILHDGPPYANGNLHMGHALNKILKDFIVRYKSMQGYYSPYVPGWDTHGLPIEQALTKKGVKRKEMPVSEFRELCKEFALEQIDIQKKDFKRLGVNGDFNDPYITLKPEYEAAQIRLFGEMADRGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSPSIYVAFDVKDGKGVVDEDAKFIIWTTTPWTLPSNVAITVHPELKYGQYKVNGEKYVVGTDLVEEVAEALDWDKDAIELEKTFTGKELEYVETQHPFVDRVSLVINGLHVTTDAGTGAVHTAPGHGEDDYIVGQKYGLPVISPLDDKGVFTEEGGQFEGMFYDKANKAVTDLLKENGSLLKLQFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIEETHFKVDWGKTRIYNMIRDRGEWVISRQRVWGVPLPVFYAENGDIIMDKEVIYHVANLFEKYGSNVWFDREAKDLLPEGFTHPGSPNGEFTKEEDIMDVWFDSGSSHRGVLETRPELSFPADLYLEGSDQYRGWFNSSITTSVATRGQSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQIVKQKGADIARLWVSSVDYLSDVRISDEILKQTADVYRKIRNTLRFMLGNVNDFNPSTDALDEADLLEVDRYLLNRLREFTANIIKHYDNFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEKQDSPKRRSMQTVLYQILVDMTKLLAPILAHTAEEVWSYIPHVEEESVHLANMPKVVEPDTALLEKWNTFMKLRDDVNRALESARNDKVIGKSLEAKVIIGSNEHFDATSFLKDFENLQQLFIVSQVEVEDKVEDGTEYYHGDIKVVHADGEKCERCWNYSTELGSANGLDHLCPRCQAVVETL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP015642_1	1.1\|505061\|29\|CP015642\|PILER-CR,CRISPRCasFinder,CRT	505061-505089	29	NZ_AP019752	Staphylococcus aureus strain JRA307 plasmid pJRA307-1, complete sequence	27166-27194	2	0.931
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_KM348008	Bacillus pumilus strain 15.1 plasmid pBp15.1S, complete sequence	2599-2627	4	0.862
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_KM348008	Bacillus pumilus strain 15.1 plasmid pBp15.1S, complete sequence	2599-2627	4	0.862
CP015642_1	1.1\|505061\|29\|CP015642\|PILER-CR,CRISPRCasFinder,CRT	505061-505089	29	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	11973-12001	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	46331-46359	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	92416-92444	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NC_021496	Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence	14780-14808	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	MG516911	Proteus mirabilis plasmid pPm60, complete sequence	50065-50093	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP047114	Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence	39404-39432	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP053899	Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence	109636-109664	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP053895	Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence	79715-79743	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP047288	Proteus cibarius strain G11 plasmid p152, complete sequence	69127-69155	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP053372	Proteus cibarius strain G32 plasmid pG32-177, complete sequence	64382-64410	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP053043	Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence	102225-102253	5	0.828
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP053897	Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence	82946-82974	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	46331-46359	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	92416-92444	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NC_021496	Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence	14780-14808	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	MG516911	Proteus mirabilis plasmid pPm60, complete sequence	50065-50093	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP047114	Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence	39404-39432	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP053899	Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence	109636-109664	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP053895	Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence	79715-79743	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP047288	Proteus cibarius strain G11 plasmid p152, complete sequence	69127-69155	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP053372	Proteus cibarius strain G32 plasmid pG32-177, complete sequence	64382-64410	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP053043	Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence	102225-102253	5	0.828
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP053897	Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence	82946-82974	5	0.828
CP015642_1	1.1\|505061\|29\|CP015642\|PILER-CR,CRISPRCasFinder,CRT	505061-505089	29	NZ_CP011248	Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence	157027-157055	6	0.793
CP015642_1	1.1\|505061\|29\|CP015642\|PILER-CR,CRISPRCasFinder,CRT	505061-505089	29	NZ_CP032919	Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence	156788-156816	6	0.793
CP015642_1	1.1\|505061\|29\|CP015642\|PILER-CR,CRISPRCasFinder,CRT	505061-505089	29	NZ_CP033029	Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence	156872-156900	6	0.793
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP045855	Agrobacterium sp. MA01 plasmid punnamed1, complete sequence	63502-63531	6	0.8
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP014171	Clostridium tyrobutyricum strain KCTC 5387 plasmid pCTK01, complete sequence	21003-21031	6	0.793
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	CP016281	Clostridium tyrobutyricum strain W428 plasmid pW428, complete sequence	15738-15766	6	0.793
CP015642_2	2.8\|1823415\|30\|CP015642\|CRISPRCasFinder,CRT	1823415-1823444	30	MN694376	Marine virus AFVG_250M360, complete genome	1914-1943	6	0.8
CP015642_2	2.8\|1823415\|30\|CP015642\|CRISPRCasFinder,CRT	1823415-1823444	30	MN694177	Marine virus AFVG_250M361, complete genome	37138-37167	6	0.8
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP014171	Clostridium tyrobutyricum strain KCTC 5387 plasmid pCTK01, complete sequence	21003-21031	6	0.793
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	CP016281	Clostridium tyrobutyricum strain W428 plasmid pW428, complete sequence	15738-15766	6	0.793
CP015642_2	2.17\|1823417\|30\|CP015642\|PILER-CR	1823417-1823446	30	MN694376	Marine virus AFVG_250M360, complete genome	1914-1943	6	0.8
CP015642_2	2.17\|1823417\|30\|CP015642\|PILER-CR	1823417-1823446	30	MN694177	Marine virus AFVG_250M361, complete genome	37138-37167	6	0.8
CP015642_2	2.1\|1822957\|29\|CP015642\|CRISPRCasFinder,CRT	1822957-1822985	29	NZ_LN774770	Lactococcus piscium MKFS47 plasmid II, complete sequence	47770-47798	7	0.759
CP015642_2	2.2\|1823022\|29\|CP015642\|CRISPRCasFinder,CRT	1823022-1823050	29	NZ_AP017915	Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ1 DNA, complete sequence, phylotype ProJPt-1	13818-13846	7	0.759
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP053309	Spiroplasma citri strain C5 plasmid pScpC5-5, complete sequence	251-279	7	0.759
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NC_021795	Cellulophaga phage phi17:1, complete genome	3978-4006	7	0.759
CP015642_2	2.9\|1823481\|29\|CP015642\|CRISPRCasFinder,CRT	1823481-1823509	29	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	35538-35566	7	0.759
CP015642_2	2.9\|1823481\|29\|CP015642\|CRISPRCasFinder,CRT	1823481-1823509	29	MK250016	Prevotella phage Lak-A1, complete genome	257107-257135	7	0.759
CP015642_2	2.9\|1823481\|29\|CP015642\|CRISPRCasFinder,CRT	1823481-1823509	29	MK250019	Prevotella phage Lak-A2, complete genome	178241-178269	7	0.759
CP015642_2	2.9\|1823481\|29\|CP015642\|CRISPRCasFinder,CRT	1823481-1823509	29	AP014117	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S25-C108, * SEQUENCING IN PROGRESS *	2493-2521	7	0.759
CP015642_2	2.10\|1822959\|29\|CP015642\|PILER-CR	1822959-1822987	29	NZ_LN774770	Lactococcus piscium MKFS47 plasmid II, complete sequence	47770-47798	7	0.759
CP015642_2	2.11\|1823024\|29\|CP015642\|PILER-CR	1823024-1823052	29	NZ_AP017915	Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ1 DNA, complete sequence, phylotype ProJPt-1	13818-13846	7	0.759
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP053309	Spiroplasma citri strain C5 plasmid pScpC5-5, complete sequence	251-279	7	0.759
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NC_021795	Cellulophaga phage phi17:1, complete genome	3978-4006	7	0.759
CP015642_2	2.18\|1823483\|29\|CP015642\|PILER-CR	1823483-1823511	29	NC_014841	Pantoea sp. At-9b plasmid pPAT9B04, complete sequence	35538-35566	7	0.759
CP015642_2	2.18\|1823483\|29\|CP015642\|PILER-CR	1823483-1823511	29	MK250016	Prevotella phage Lak-A1, complete genome	257107-257135	7	0.759
CP015642_2	2.18\|1823483\|29\|CP015642\|PILER-CR	1823483-1823511	29	MK250019	Prevotella phage Lak-A2, complete genome	178241-178269	7	0.759
CP015642_2	2.18\|1823483\|29\|CP015642\|PILER-CR	1823483-1823511	29	AP014117	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S25-C108, * SEQUENCING IN PROGRESS *	2493-2521	7	0.759
CP015642_1	1.2\|505126\|30\|CP015642\|PILER-CR,CRISPRCasFinder,CRT	505126-505155	30	NZ_CP023734	Escherichia coli strain FORC 064 plasmid pFORC64.3, complete sequence	36534-36563	8	0.733
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	299736-299765	8	0.733
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	547084-547113	8	0.733
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	MN693083	Marine virus AFVG_25M55, complete genome	22884-22913	8	0.733
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NC_019736	Crinalium epipsammum PCC 9333 plasmid pCRI9333.05, complete sequence	21549-21577	8	0.724
CP015642_2	2.7\|1823350\|29\|CP015642\|CRISPRCasFinder,CRT	1823350-1823378	29	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	186874-186902	8	0.724
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NC_019736	Crinalium epipsammum PCC 9333 plasmid pCRI9333.05, complete sequence	21549-21577	8	0.724
CP015642_2	2.16\|1823352\|29\|CP015642\|PILER-CR	1823352-1823380	29	NZ_CP044980	Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence	186874-186902	8	0.724
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP017764	Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence	3392-3421	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP032868	Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence	63468-63497	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP032864	Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence	12857-12886	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP032866	Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence	61706-61735	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP021893	Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence	36543-36572	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP041370	Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence	23094-23123	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP020024	Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence	50305-50334	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP032862	Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence	31925-31954	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP018185	Bacillus subtilis strain KH2 plasmid, complete sequence	30729-30758	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NC_015148	Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335	24963-24992	10	0.667
CP015642_1	1.9\|505587\|30\|CP015642\|CRT	505587-505616	30	NZ_CP014473	Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence	24963-24992	10	0.667

1. spacer 1.1|505061|29|CP015642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019752 (Staphylococcus aureus strain JRA307 plasmid pJRA307-1, complete sequence) position: , mismatch: 2, identity: 0.931

aacaccagaaaatatcacgaaagtaacaa	CRISPR spacer
aacacctgaaaatatcacgaaagtcacaa	Protospacer
****** ***************** ****

2. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_KM348008 (Bacillus pumilus strain 15.1 plasmid pBp15.1S, complete sequence) position: , mismatch: 4, identity: 0.862

tttttctgcccttttttataatttaattg	CRISPR spacer
gttttctgcccttttttatagttttatta	Protospacer
 *******************.*** ***.

3. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_KM348008 (Bacillus pumilus strain 15.1 plasmid pBp15.1S, complete sequence) position: , mismatch: 4, identity: 0.862

tttttctgcccttttttataatttaattg	CRISPR spacer
gttttctgcccttttttatagttttatta	Protospacer
 *******************.*** ***.

4. spacer 1.1|505061|29|CP015642|PILER-CR,CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 5, identity: 0.828

aacaccagaaaatatcacgaaagtaacaa	CRISPR spacer
aacaccagaaaacatcaccaaagttccat	Protospacer
************.***** *****  **

5. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
attttctgctcttttttattatttaaatc	Protospacer
 ********.********* ****** *

6. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
attttctgctcttttttattatttaaatc	Protospacer
 ********.********* ****** *

7. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NC_021496 (Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
cttttgtgcccctttttataatttaacgg	Protospacer
.**** *****.**************. *

8. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to MG516911 (Proteus mirabilis plasmid pPm60, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

9. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP047114 (Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

10. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP053899 (Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

11. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP053895 (Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

12. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP047288 (Proteus cibarius strain G11 plasmid p152, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

13. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP053372 (Proteus cibarius strain G32 plasmid pG32-177, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

14. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP053043 (Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

15. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP053897 (Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

16. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
attttctgctcttttttattatttaaatc	Protospacer
 ********.********* ****** *

17. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
attttctgctcttttttattatttaaatc	Protospacer
 ********.********* ****** *

18. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NC_021496 (Lactobacillus reuteri I5007 plasmid pLRI02, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
cttttgtgcccctttttataatttaacgg	Protospacer
.**** *****.**************. *

19. spacer 2.16|1823352|29|CP015642|PILER-CR matches to MG516911 (Proteus mirabilis plasmid pPm60, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

20. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP047114 (Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

21. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP053899 (Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

22. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP053895 (Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

23. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP047288 (Proteus cibarius strain G11 plasmid p152, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

24. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP053372 (Proteus cibarius strain G32 plasmid pG32-177, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

25. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP053043 (Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

26. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP053897 (Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence) position: , mismatch: 5, identity: 0.828

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctttccttttttataattttcttc	Protospacer
******* .***************  **

27. spacer 1.1|505061|29|CP015642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 6, identity: 0.793

aacaccagaaaatatcacgaaagtaacaa	CRISPR spacer
aaccccagaaaatatcacgatagacgcat	Protospacer
*** **************** **  .**

28. spacer 1.1|505061|29|CP015642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 6, identity: 0.793

aacaccagaaaatatcacgaaagtaacaa	CRISPR spacer
aaccccagaaaatatcacgatagacgcat	Protospacer
*** **************** **  .**

29. spacer 1.1|505061|29|CP015642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 6, identity: 0.793

aacaccagaaaatatcacgaaagtaacaa	CRISPR spacer
aaccccagaaaatatcacgatagacgcat	Protospacer
*** **************** **  .**

30. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP045855 (Agrobacterium sp. MA01 plasmid punnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
gttggcccaaacggaactggaactgcacct	Protospacer
..*..****** ****** ***********

31. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP014171 (Clostridium tyrobutyricum strain KCTC 5387 plasmid pCTK01, complete sequence) position: , mismatch: 6, identity: 0.793

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctgccctttttaataaccatatag	Protospacer
**************** ****..  ** *

32. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to CP016281 (Clostridium tyrobutyricum strain W428 plasmid pW428, complete sequence) position: , mismatch: 6, identity: 0.793

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctgccctttttaataaccatatag	Protospacer
**************** ****..  ** *

33. spacer 2.8|1823415|30|CP015642|CRISPRCasFinder,CRT matches to MN694376 (Marine virus AFVG_250M360, complete genome) position: , mismatch: 6, identity: 0.8

ctgatgtttcgtcattgcttgtcttgctgc	CRISPR spacer
ataatttttcgtcatggcttgtcttgtttc	Protospacer
 *.** ********* **********.* *

34. spacer 2.8|1823415|30|CP015642|CRISPRCasFinder,CRT matches to MN694177 (Marine virus AFVG_250M361, complete genome) position: , mismatch: 6, identity: 0.8

ctgatgtttcgtcattgcttgtcttgctgc	CRISPR spacer
ataatttttcgtcatggcttgtcttgtttc	Protospacer
 *.** ********* **********.* *

35. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP014171 (Clostridium tyrobutyricum strain KCTC 5387 plasmid pCTK01, complete sequence) position: , mismatch: 6, identity: 0.793

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctgccctttttaataaccatatag	Protospacer
**************** ****..  ** *

36. spacer 2.16|1823352|29|CP015642|PILER-CR matches to CP016281 (Clostridium tyrobutyricum strain W428 plasmid pW428, complete sequence) position: , mismatch: 6, identity: 0.793

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttctgccctttttaataaccatatag	Protospacer
**************** ****..  ** *

37. spacer 2.17|1823417|30|CP015642|PILER-CR matches to MN694376 (Marine virus AFVG_250M360, complete genome) position: , mismatch: 6, identity: 0.8

ctgatgtttcgtcattgcttgtcttgctgc	CRISPR spacer
ataatttttcgtcatggcttgtcttgtttc	Protospacer
 *.** ********* **********.* *

38. spacer 2.17|1823417|30|CP015642|PILER-CR matches to MN694177 (Marine virus AFVG_250M361, complete genome) position: , mismatch: 6, identity: 0.8

ctgatgtttcgtcattgcttgtcttgctgc	CRISPR spacer
ataatttttcgtcatggcttgtcttgtttc	Protospacer
 *.** ********* **********.* *

39. spacer 2.1|1822957|29|CP015642|CRISPRCasFinder,CRT matches to NZ_LN774770 (Lactococcus piscium MKFS47 plasmid II, complete sequence) position: , mismatch: 7, identity: 0.759

tttaagagcatgtagctatgatttggata	CRISPR spacer
tttaagagcatgttgttatgattgccttg	Protospacer
************* *.*******    *.

40. spacer 2.2|1823022|29|CP015642|CRISPRCasFinder,CRT matches to NZ_AP017915 (Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ1 DNA, complete sequence, phylotype ProJPt-1) position: , mismatch: 7, identity: 0.759

acgatagttattaaacgatagttattaaa	CRISPR spacer
agattagttattaaatgatatttattatt	Protospacer
* . ***********.**** ******

41. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP053309 (Spiroplasma citri strain C5 plasmid pScpC5-5, complete sequence) position: , mismatch: 7, identity: 0.759

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttatgccgttttttataattttcaaa	Protospacer
***** **** *************    .

42. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NC_021795 (Cellulophaga phage phi17:1, complete genome) position: , mismatch: 7, identity: 0.759

tttttctgcccttttttataatttaattg	CRISPR spacer
cttttttgcccttttttataatagtacgg	Protospacer
.****.****************   *. *

43. spacer 2.9|1823481|29|CP015642|CRISPRCasFinder,CRT matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
gtaatcgtcgttttatgatttttttattg	Protospacer
 *************** **** ** * ..

44. spacer 2.9|1823481|29|CP015642|CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
atcaaattcgtttcattatttattaaact	Protospacer
 * *   ******.**************

45. spacer 2.9|1823481|29|CP015642|CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
atcaaattcgtttcattatttattaaact	Protospacer
 * *   ******.**************

46. spacer 2.9|1823481|29|CP015642|CRISPRCasFinder,CRT matches to AP014117 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S25-C108, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
ataataatcgttttattatttattttgaa	Protospacer
 **** .*****************  . *

47. spacer 2.10|1822959|29|CP015642|PILER-CR matches to NZ_LN774770 (Lactococcus piscium MKFS47 plasmid II, complete sequence) position: , mismatch: 7, identity: 0.759

tttaagagcatgtagctatgatttggata	CRISPR spacer
tttaagagcatgttgttatgattgccttg	Protospacer
************* *.*******    *.

48. spacer 2.11|1823024|29|CP015642|PILER-CR matches to NZ_AP017915 (Candidatus Azobacteroides pseudotrichonymphae plasmid pAPPJ1 DNA, complete sequence, phylotype ProJPt-1) position: , mismatch: 7, identity: 0.759

acgatagttattaaacgatagttattaaa	CRISPR spacer
agattagttattaaatgatatttattatt	Protospacer
* . ***********.**** ******

49. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP053309 (Spiroplasma citri strain C5 plasmid pScpC5-5, complete sequence) position: , mismatch: 7, identity: 0.759

tttttctgcccttttttataatttaattg	CRISPR spacer
tttttatgccgttttttataattttcaaa	Protospacer
***** **** *************    .

50. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NC_021795 (Cellulophaga phage phi17:1, complete genome) position: , mismatch: 7, identity: 0.759

tttttctgcccttttttataatttaattg	CRISPR spacer
cttttttgcccttttttataatagtacgg	Protospacer
.****.****************   *. *

51. spacer 2.18|1823483|29|CP015642|PILER-CR matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
gtaatcgtcgttttatgatttttttattg	Protospacer
 *************** **** ** * ..

52. spacer 2.18|1823483|29|CP015642|PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
atcaaattcgtttcattatttattaaact	Protospacer
 * *   ******.**************

53. spacer 2.18|1823483|29|CP015642|PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
atcaaattcgtttcattatttattaaact	Protospacer
 * *   ******.**************

54. spacer 2.18|1823483|29|CP015642|PILER-CR matches to AP014117 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C36-MedDCM-OCT-S25-C108, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.759

ttaatcgtcgttttattatttattaaaca	CRISPR spacer
ataataatcgttttattatttattttgaa	Protospacer
 **** .*****************  . *

55. spacer 1.2|505126|30|CP015642|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023734 (Escherichia coli strain FORC 064 plasmid pFORC64.3, complete sequence) position: , mismatch: 8, identity: 0.733

ttatggcgttttgtgaaacagtgccgaatg	CRISPR spacer
tattattaatttgtgatacagtgccgaatg	Protospacer
*  *. .. ******* *************

56. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
cggaacccaaaagcaacttgaattgctgtt	Protospacer
   ********** ********.***  .*

57. spacer 1.9|505587|30|CP015642|CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
cggaacccaaaagcaacttgaattgctgtt	Protospacer
   ********** ********.***  .*

58. spacer 1.9|505587|30|CP015642|CRT matches to MN693083 (Marine virus AFVG_25M55, complete genome) position: , mismatch: 8, identity: 0.733

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
actaacccaaaagcaccttgaacaaagttt	Protospacer
************* * ******* . ...*

59. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NC_019736 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.05, complete sequence) position: , mismatch: 8, identity: 0.724

tttttctgcccttttttataatttaattg	CRISPR spacer
agattttgccctattttataatttaaagt	Protospacer
   **.****** *************

60. spacer 2.7|1823350|29|CP015642|CRISPRCasFinder,CRT matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 8, identity: 0.724

tttttctgcccttttttataatttaattg	CRISPR spacer
aacatctgcccctttttataatttacata	Protospacer
  . *******.*************  *.

61. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NC_019736 (Crinalium epipsammum PCC 9333 plasmid pCRI9333.05, complete sequence) position: , mismatch: 8, identity: 0.724

tttttctgcccttttttataatttaattg	CRISPR spacer
agattttgccctattttataatttaaagt	Protospacer
   **.****** *************

62. spacer 2.16|1823352|29|CP015642|PILER-CR matches to NZ_CP044980 (Bacillus thuringiensis strain BT62 plasmid pBT62B, complete sequence) position: , mismatch: 8, identity: 0.724

tttttctgcccttttttataatttaattg	CRISPR spacer
aacatctgcccctttttataatttacata	Protospacer
  . *******.*************  *.

63. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP017764 (Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

64. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP032868 (Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

65. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP032864 (Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

66. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP032866 (Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

67. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP021893 (Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

68. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP041370 (Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

69. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP020024 (Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

70. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP032862 (Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

71. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP018185 (Bacillus subtilis strain KH2 plasmid, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

72. spacer 1.9|505587|30|CP015642|CRT matches to NC_015148 (Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

73. spacer 1.9|505587|30|CP015642|CRT matches to NZ_CP014473 (Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.667

actaacccaaaaggaacttgaactgcacct	CRISPR spacer
ggctacccaagaggaacttgaactgtttga	Protospacer
. . ******.**************. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1025875 : 1036252

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI01246.1\|1025875_1026160_+	co-chaperone GroES	A0A221S4A8	uncultured_virus	1.8e-13	35.9
AWI01247.1\|1026198_1027818_+	chaperonin GroL	A0A240F779	uncultured_virus	3.8e-156	53.0
AWI01248.1\|1027881_1029057_-	recombinase	A0A1W6JPB2	Staphylococcus_phage	1.0e-150	66.9
AWI01249.1\|1029066_1029648_-	hypothetical protein	A0A0A8WFJ2	Clostridium_phage	2.3e-07	37.1
AWI01250.1\|1029741_1029960_+	hypothetical protein	NA	NA	NA	NA
AWI01251.1\|1029963_1030269_+	excisionase	A0A1W6JPE8	Staphylococcus_phage	1.1e-35	76.5
AWI01252.1\|1030270_1030474_+	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	7.5e-22	68.7
AWI01253.1\|1030476_1030899_+	hypothetical protein	NA	NA	NA	NA
AWI01254.1\|1030898_1031198_+	pathogenicity island protein	Q4ZE75	Staphylococcus_phage	9.4e-21	50.5
AWI01255.1\|1031300_1033640_+	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	6.0e-139	41.9
AWI01256.1\|1034023_1034290_+	hypothetical protein	H9A0M1	Staphylococcus_phage	1.8e-07	42.5
AWI01257.1\|1035685_1036252_+	peptidase U35	Q8SBP9	Clostridium_phage	5.2e-12	32.2

DBSCAN-SWA_2

1167127 : 1202981

Staphylococcus_phage(89.29%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI01374.1\|1167127_1169170_-	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-67	30.3
AWI01375.1\|1169430_1169943_-	hypothetical protein	NA	NA	NA	NA
AWI01376.1\|1170122_1170815_+	hypothetical protein	NA	NA	NA	NA
AWI01377.1\|1170930_1172319_+	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	5.9e-158	57.3
AWI01378.1\|1172321_1173332_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.5e-97	53.7
AWI01379.1\|1173322_1173580_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	4.7e-29	75.7
AWI01380.1\|1173657_1174149_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.9e-35	49.7
AWI01381.1\|1174114_1174888_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	1.3e-93	66.5
AWI01382.1\|1174940_1176533_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	6.8e-259	81.4
AWI01383.1\|1176920_1178117_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	3.0e-187	81.6
AWI01384.1\|1178213_1179113_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.0e-99	75.4
AWI01385.1\|1179234_1180071_+	glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	4.2e-103	63.8
AWI01386.1\|1180122_1180476_-	camphor resistance protein CrcB	NA	NA	NA	NA
AWI01387.1\|1180468_1180840_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	6.1e-38	64.5
AWI01388.1\|1180900_1181209_-	hypothetical protein	NA	NA	NA	NA
AWI01389.1\|1181396_1182113_+	transaldolase	M1PR54	Cyanophage	3.8e-20	35.0
AWI01390.1\|1182253_1182715_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.4e-18	40.9
AWI01391.1\|1182689_1183130_-	hypothetical protein	NA	NA	NA	NA
AWI01392.1\|1183129_1183627_-	hypothetical protein	A0A2H4PQT5	Staphylococcus_phage	1.1e-21	42.5
AWI01393.1\|1183831_1184053_+	hypothetical protein	NA	NA	NA	NA
AWI01394.1\|1184226_1185543_+\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	1.4e-44	31.0
AWI01395.1\|1185939_1186785_+	autolysin	A0A1W6JNR1	Staphylococcus_phage	4.2e-42	41.7
AWI01396.1\|1186926_1188408_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.0e-14	64.5
AWI01397.1\|1188802_1189852_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	4.1e-119	59.9
AWI01398.1\|1189856_1190489_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	2.8e-67	61.4
AWI01399.1\|1190504_1191686_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.8e-168	73.5
AWI01400.1\|1191718_1192180_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.9e-58	75.2
AWI01401.1\|1192253_1193249_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.8e-115	63.3
AWI01402.1\|1193510_1194341_+	lysophospholipase	NA	NA	NA	NA
AWI01403.1\|1194517_1195474_+	L-lactate dehydrogenase	NA	NA	NA	NA
AWI01404.1\|1195539_1196097_-	rRNA methyltransferase	A0A2H4PQV0	Staphylococcus_phage	3.5e-61	61.6
AWI01405.1\|1196093_1197056_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	4.3e-67	83.7
AWI01406.1\|1197328_1198507_+	multidrug MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.0e-163	73.2
AWI01407.1\|1198886_1201301_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	85.0
AWI01408.1\|1201321_1201639_+	sulfurtransferase	A0A2H4PQR9	Staphylococcus_phage	1.5e-32	66.7
AWI01409.1\|1201724_1202981_-	hypothetical protein	A0A2H4PQX1	Staphylococcus_phage	2.6e-40	75.0

DBSCAN-SWA_3

1325485 : 1335559

Klosneuvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI01515.1\|1325485_1327759_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.6e-75	30.9
AWI01516.1\|1327777_1328296_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	8.1e-28	44.4
AWI01517.1\|1328647_1330837_+	GTP pyrophosphokinase	A0A1B1IUF0	uncultured_Mediterranean_phage	9.0e-12	38.0
AWI01518.1\|1330852_1331305_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
AWI01519.1\|1331301_1332177_+	cell wall amidase	A0A0N9SGH1	Paenibacillus_phage	6.8e-11	33.1
AWI01520.1\|1332502_1333777_+\|tRNA	histidine--tRNA ligase	A0A2K9L6G5	Tupanvirus	2.3e-15	23.8
AWI01521.1\|1333792_1335559_+\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	9.2e-07	33.7

DBSCAN-SWA_4

1622456 : 1661492

Staphylococcus_virus(38.64%)

portal,terminase,integrase

attL 1621546:1621568|attR 1661528:1661550

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1621546:1621568	attL	NA	NA	NA	NA
AWI01789.1\|1622456_1623014_-	hypothetical protein	A0A0U4JD08	Gordonia_phage	1.2e-05	32.2
AWI02767.1\|1623430_1623616_-	XRE family transcriptional regulator	A0A0F6N3H3	Staphylococcus_phage	1.4e-22	86.9
AWI01790.1\|1624323_1624866_-	hypothetical protein	NA	NA	NA	NA
AWI01791.1\|1625575_1627048_-	hypothetical protein	A0A2H4JAU4	uncultured_Caudovirales_phage	2.6e-220	71.8
AWI01792.1\|1627048_1627297_-	PTS mannose transporter subunit IID	Q4ZD59	Staphylococcus_phage	2.2e-36	87.8
AWI01793.1\|1627436_1627736_-	hypothetical protein	Q4ZD60	Staphylococcus_phage	6.3e-33	80.2
AWI01794.1\|1627792_1628071_-	hypothetical protein	A0A2H4J771	uncultured_Caudovirales_phage	7.6e-17	63.2
AWI01795.1\|1628076_1629945_-	hypothetical protein	A0A2H4JCH3	uncultured_Caudovirales_phage	4.6e-150	45.8
AWI01796.1\|1629961_1631614_-	hypothetical protein	A0A2P1JUJ3	Bacillus_phage	4.7e-45	36.3
AWI01797.1\|1631624_1632554_-	hypothetical protein	A0A2H4J5C4	uncultured_Caudovirales_phage	4.3e-48	59.6
AWI01798.1\|1632557_1636331_-	hypothetical protein	H9A0P1	Staphylococcus_phage	9.8e-115	65.0
AWI01799.1\|1636353_1636668_-	hypothetical protein	NA	NA	NA	NA
AWI01800.1\|1636700_1637159_-	hypothetical protein	NA	NA	NA	NA
AWI01801.1\|1637226_1637784_-	hypothetical protein	A0A1W6JQQ8	Staphylococcus_phage	5.1e-20	33.5
AWI01802.1\|1637797_1638268_-	hypothetical protein	A0A2H4PQL6	Staphylococcus_phage	3.5e-14	31.8
AWI01803.1\|1638282_1638666_-	hypothetical protein	M9NRJ3	Staphylococcus_phage	4.7e-25	46.3
AWI01804.1\|1638669_1638993_-	hypothetical protein	NA	NA	NA	NA
AWI01805.1\|1638982_1639303_-	hypothetical protein	NA	NA	NA	NA
AWI01806.1\|1639499_1640459_-	hypothetical protein	A0A097PAW2	Streptococcus_pyogenes_phage	1.1e-35	53.4
AWI01807.1\|1640473_1641043_-	hypothetical protein	I6SB44	Staphylococcus_virus	5.6e-22	45.2
AWI01808.1\|1641146_1642133_-	hypothetical protein	Q4ZC73	Staphylococcus_virus	9.5e-62	42.0
AWI01809.1\|1642101_1643502_-\|portal	phage portal protein	A0A1W6JQP9	Staphylococcus_phage	1.7e-125	49.9
AWI01810.1\|1643498_1644770_-\|terminase	terminase	Q4ZCF2	Staphylococcus_virus	2.4e-230	93.1
AWI01811.1\|1644769_1645147_-	DNA-binding protein	A0A1W6JP86	Staphylococcus_phage	6.7e-40	64.0
AWI01812.1\|1645225_1645771_-	hypothetical protein	NA	NA	NA	NA
AWI01813.1\|1645967_1646393_-	transcriptional regulator	A0A1J0MFW0	Staphylococcus_phage	2.3e-57	80.9
AWI01814.1\|1646519_1646696_-	transcriptional regulator	Q4ZC79	Staphylococcus_virus	2.1e-20	87.9
AWI01815.1\|1646698_1646995_-	hypothetical protein	NA	NA	NA	NA
AWI01816.1\|1647539_1647767_-	hypothetical protein	Q4ZC83	Staphylococcus_virus	3.6e-17	71.6
AWI01817.1\|1647763_1648024_-	hypothetical protein	NA	NA	NA	NA
AWI01818.1\|1648481_1648901_-	hypothetical protein	Q4ZC89	Staphylococcus_virus	7.7e-21	60.0
AWI01819.1\|1648901_1649417_-	hypothetical protein	Q4ZC91	Staphylococcus_virus	3.6e-12	30.8
AWI01820.1\|1649429_1649621_-	hypothetical protein	Q4ZC92	Staphylococcus_virus	6.6e-28	98.4
AWI01821.1\|1649621_1650029_-	Holliday junction resolvase	Q4ZC94	Staphylococcus_virus	6.9e-67	91.9
AWI01822.1\|1650012_1650201_-	hypothetical protein	Q4ZC95	Staphylococcus_virus	7.2e-27	95.2
AWI01823.1\|1650194_1650968_-	DNA replication protein DnaC	A0A1W6JP70	Staphylococcus_phage	6.0e-104	79.2
AWI01824.1\|1650980_1651718_-	replication protein	Q4ZDQ6	Staphylococcus_virus	9.0e-65	65.4
AWI01825.1\|1651763_1652246_+	hypothetical protein	A0A2H4JC39	uncultured_Caudovirales_phage	9.4e-47	61.9
AWI01826.1\|1652261_1652933_-	hypothetical protein	Q4ZC99	Staphylococcus_virus	4.7e-113	86.0
AWI01827.1\|1652945_1653392_-	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	3.1e-52	90.2
AWI01828.1\|1653391_1654063_-	single-stranded DNA-binding protein	A0A1J0MF78	Staphylococcus_phage	8.4e-110	89.5
AWI01829.1\|1654025_1654280_-	hypothetical protein	Q4ZCA2	Staphylococcus_virus	6.1e-37	96.4
AWI01830.1\|1654272_1654497_-	hypothetical protein	NA	NA	NA	NA
AWI01831.1\|1654596_1654812_-	hypothetical protein	Q4ZCA4	Staphylococcus_virus	3.3e-28	90.1
AWI01832.1\|1654824_1655127_-	hypothetical protein	Q4ZCA6	Staphylococcus_virus	6.7e-51	98.0
AWI01833.1\|1655241_1655565_+	hypothetical protein	NA	NA	NA	NA
AWI01834.1\|1655758_1655986_-	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	2.0e-23	71.6
AWI01835.1\|1655986_1656760_-	phage antirepressor	Q4ZCB0	Staphylococcus_virus	1.5e-142	99.2
AWI01836.1\|1656875_1657112_+	hypothetical protein	Q4ZBN3	Staphylococcus_phage	6.0e-31	84.6
AWI01837.1\|1657280_1657520_-	transcriptional regulator	A0A2H4J9X2	uncultured_Caudovirales_phage	3.9e-38	94.9
AWI01838.1\|1657712_1658045_+	transcriptional regulator	A0A2H4JC44	uncultured_Caudovirales_phage	1.0e-47	94.5
AWI01839.1\|1658058_1658532_+	toxin	A0A2H4J4F2	uncultured_Caudovirales_phage	1.1e-55	65.4
AWI01840.1\|1658536_1659160_+	hypothetical protein	NA	NA	NA	NA
AWI01841.1\|1659573_1660089_+	hypothetical protein	A0A0H3U494	Staphylococcus_phage	3.5e-39	48.0
AWI01842.1\|1660090_1660399_+	hypothetical protein	NA	NA	NA	NA
AWI01843.1\|1660463_1661492_+\|integrase	integrase	Q4ZCC1	Staphylococcus_virus	5.1e-191	98.8
1661528:1661550	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1934125 : 1942547

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI02094.1\|1934125_1934692_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.6e-32	40.3
AWI02095.1\|1934688_1935729_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.6e-70	44.1
AWI02096.1\|1935733_1937155_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.6e-47	30.8
AWI02097.1\|1937133_1939323_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	7.4e-139	39.4
AWI02098.1\|1939315_1939987_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWI02099.1\|1939986_1940247_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWI02100.1\|1940246_1940951_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	1.1e-48	42.9
AWI02101.1\|1940950_1942078_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AWI02102.1\|1942064_1942547_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.7e-22	44.7

DBSCAN-SWA_6

2183606 : 2217596

Staphylococcus_phage(27.78%)

transposase,capsid,head,portal,terminase,tail,integrase

attL 2175431:2175447|attR 2213189:2213205

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2175431:2175447	attL	NA	NA	NA	NA
AWI02303.1\|2183606_2183915_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AWI02304.1\|2184094_2185738_-\|terminase	terminase	A0A290GJW3	Caldibacillus_phage	1.0e-156	50.8
AWI02305.1\|2185730_2186051_-	hypothetical protein	NA	NA	NA	NA
AWI02306.1\|2186185_2186479_-	HNH endonuclease	R9TNN2	Paenibacillus_phage	7.3e-18	43.8
AWI02307.1\|2186471_2186753_-	DNA packaging protein	NA	NA	NA	NA
AWI02308.1\|2186818_2188051_-\|capsid	phage capsid protein	NA	NA	NA	NA
AWI02309.1\|2188052_2188619_-	peptidase U35	Q8SBP9	Clostridium_phage	2.3e-12	33.8
AWI02310.1\|2188605_2189814_-\|portal	phage portal protein	A0A1L2BY94	Clostridium_phage	1.2e-58	35.0
AWI02311.1\|2190011_2190353_-	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	2.2e-42	70.5
AWI02312.1\|2190601_2192101_-	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	3.0e-216	73.5
AWI02313.1\|2192097_2193018_-	hypothetical protein	A0A1W6JQL5	Staphylococcus_phage	3.0e-57	42.6
AWI02314.1\|2193061_2193337_-	pathogenicity island protein	A0A1W6JPG5	Staphylococcus_phage	4.0e-18	51.6
AWI02315.1\|2193336_2193630_-	hypothetical protein	NA	NA	NA	NA
AWI02316.1\|2193632_2193836_-	pathogenicity island protein	A0A2H4JD47	uncultured_Caudovirales_phage	1.1e-20	74.6
AWI02317.1\|2193852_2194098_-	hypothetical protein	NA	NA	NA	NA
AWI02318.1\|2194101_2194320_-	transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	2.3e-13	54.2
AWI02319.1\|2194482_2195184_+	hypothetical protein	A0A2H4JH10	uncultured_Caudovirales_phage	3.2e-51	51.7
AWI02320.1\|2195203_2196262_+\|integrase	integrase	A0A1W6JQE7	Staphylococcus_phage	1.7e-64	42.7
AWI02321.1\|2197114_2197297_-	hypothetical protein	NA	NA	NA	NA
AWI02322.1\|2197810_2199124_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
AWI02323.1\|2199379_2200564_+	MFS transporter	NA	NA	NA	NA
AWI02324.1\|2200618_2201563_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.9e-53	40.6
AWI02325.1\|2201581_2202580_-	hypothetical protein	A1IMD5	Streptococcus_phage	3.4e-51	41.8
AWI02326.1\|2202566_2203490_-	RNase adaptor protein RapZ	A0A0R8VB27	Thermobifida_phage	8.8e-09	30.3
AWI02327.1\|2203655_2204612_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	7.3e-83	49.5
AWI02328.1\|2204718_2206158_-	hypothetical protein	NA	NA	NA	NA
AWI02329.1\|2206178_2206661_-	acetyltransferase	NA	NA	NA	NA
AWI02330.1\|2206672_2207500_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
AWI02331.1\|2207505_2208438_-	HPr kinase/phosphorylase	NA	NA	NA	NA
AWI02332.1\|2208626_2211476_-	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	6.3e-311	56.9
AWI02333.1\|2211486_2213469_-	excinuclease ABC subunit B	NA	NA	NA	NA
2213189:2213205	attR	NA	NA	NA	NA
AWI02334.1\|2213798_2214041_-	protein CsbA	NA	NA	NA	NA
AWI02335.1\|2214047_2214689_-	hydrolase	NA	NA	NA	NA
AWI02336.1\|2215017_2215953_-	LysM family protein	NA	NA	NA	NA
AWI02337.1\|2216279_2217596_-\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	1.4e-44	31.0

DBSCAN-SWA_7

2240647 : 2253127

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI02789.1\|2240647_2241616_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-133	78.4
AWI02358.1\|2241921_2242896_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	2.1e-170	90.7
AWI02359.1\|2243008_2245114_-	ribonucleotide-diphosphate reductase	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	88.2
AWI02360.1\|2245076_2245478_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.8e-43	65.4
AWI02361.1\|2246362_2247250_+	hypothetical protein	NA	NA	NA	NA
AWI02362.1\|2247252_2247756_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	6.6e-51	70.1
AWI02363.1\|2247938_2249462_+	peptide transporter	A0A0P0IY73	Acinetobacter_phage	7.1e-72	37.7
AWI02364.1\|2249756_2251259_+	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	3.0e-67	34.3
AWI02365.1\|2251384_2251921_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWI02366.1\|2252062_2253127_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.2e-19	25.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP015643

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP015642

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection