CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020953	Clostridium drakei strain SL1 chromosome, complete genome	8 crisprs	WYL,c2c9_V-U4,cas3,csa3,DEDDh,DinG,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,PD-DExK,PrimPol	0	4	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP020953_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_1

683693-683784

Unclear

Consensus_repeat	Method
AAATCGAATAATTATTCACTTTTA	CRISPRCasFinder

1 spacers

WYL,c2c9_V-U4

The CRISPR arrays of CP020953_1

>merge|CP020953|1|683693-683784|CRISPRCasFinder
AAATCGAATAATTATTCACTTTTAATTGATAAATATATTTTATCTTAGAAAATATTGGATGTCAATATAAATCGAATAATTATTCACATTTT

>CP020953|1|1|683693-683784|CRISPRCasFinder
AAATCGAATAATTATTCACTTTTA	ATTGATAAATATATTTTATCTTAGAAAATATTGGATGTCAATAT
AAATCGAATAATTATTCACATTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI03501.1\|685235_686198_+\|DNA-binding-transcriptional-regulator	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP020953.1\|AWI03503.1\|687177_687645_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319953
CP020953.1\|AWI03495.1\|679929_680226_+\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI07705.1\|683924_684485_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP020953.1\|AWI03491.1\|675835_676834_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|349913
CP020953.1\|AWI03505.1\|688988_690119_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
CP020953.1\|AWI03498.1\|681440_682343_-\|protein-RarD	unknown	unknown	gnl\|CDD\|225510
CP020953.1\|AWI03493.1\|677895_678423_+\|isopentenyl-diphosphate-delta-isomerase	unknown	unknown	gnl\|CDD\|240048
CP020953.1\|AWI03507.1\|690578_690740_+\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
CP020953.1\|AWI03499.1\|682423_683620_-\|dipeptidyl-aminopeptidase	unknown	unknown	gnl\|CDD\|368943
CP020953.1\|AWI03496.1\|680355_681045_+\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI03492.1\|677121_677832_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|293807
CP020953.1\|AWI03502.1\|686290_686917_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153234
CP020953.1\|AWI03508.1\|690742_691285_+\|RNA-polymerase-subunit-sigma-70	unknown	unknown	gnl\|CDD\|274357
CP020953.1\|AWI03506.1\|690269_690431_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378571
CP020953.1\|AWI03490.1\|674225_675359_+\|cell-filamentation-protein-Fic	unknown	unknown	gnl\|CDD\|225718
CP020953.1\|AWI03497.1\|681022_681280_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340949
CP020953.1\|AWI03500.1\|684716_685172_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349911
CP020953.1\|AWI03504.1\|687983_688208_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377933
CP020953.1\|AWI03494.1\|678916_679720_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224007

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI03501.1\|685235_686198_+\|DNA-binding-transcriptional-regulator	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	8.57407e-40
CP020953.1\|AWI03494.1\|678916_679720_+\|hypothetical-protein	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	3.69079e-15
CP020953.1\|AWI07705.1\|683924_684485_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.12924e-10
CP020953.1\|AWI03491.1\|675835_676834_+\|aminopeptidase	gnl\|CDD\|349913	cd05663, M28_like_PA_PDZ_associated, M28 Zn-peptidase containing a protease-associated (PA) domain insert and associated with a PDZ domain. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins, many of which contain a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate. Proteins in this subfamily are also associated with the PDZ domain, a widespread protein module that has been recruited to serve multiple functions during the course of evolution.	7.25314e-37
CP020953.1\|AWI03505.1\|688988_690119_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.70449e-32
CP020953.1\|AWI03498.1\|681440_682343_-\|protein-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	6.92083e-93
CP020953.1\|AWI03493.1\|677895_678423_+\|isopentenyl-diphosphate-delta-isomerase	gnl\|CDD\|240048	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.64668e-27
CP020953.1\|AWI03507.1\|690578_690740_+\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	8.92744e-16
CP020953.1\|AWI03499.1\|682423_683620_-\|dipeptidyl-aminopeptidase	gnl\|CDD\|368943	pfam06500, DUF1100, Alpha/beta hydrolase of unknown function (DUF1100). This family consists of several hypothetical bacterial proteins of unknown function. Members of this family have an alpha/beta hydrolase fold.	2.1676e-06
CP020953.1\|AWI03492.1\|677121_677832_+\|metal-dependent-hydrolase	gnl\|CDD\|293807	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain. This subgroup includes the uncharacterized Bacillus subtilis yflN protein. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.96931e-58
CP020953.1\|AWI03502.1\|686290_686917_+\|glutamine-amidotransferase	gnl\|CDD\|153234	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	4.10036e-77
CP020953.1\|AWI03508.1\|690742_691285_+\|RNA-polymerase-subunit-sigma-70	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	6.98127e-17
CP020953.1\|AWI03506.1\|690269_690431_+\|hypothetical-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	2.21494e-07
CP020953.1\|AWI03490.1\|674225_675359_+\|cell-filamentation-protein-Fic	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.74176e-35
CP020953.1\|AWI03503.1\|687177_687645_+\|glyoxalase	gnl\|CDD\|319953	cd09011, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	3.66179e-51
CP020953.1\|AWI03500.1\|684716_685172_+\|hypothetical-protein	gnl\|CDD\|349911	cd05661, M28_like_PA, M28 Zn-peptidase containing a PA domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	2.07514e-21
CP020953.1\|AWI03504.1\|687983_688208_+\|hypothetical-protein	gnl\|CDD\|377933	pfam07872, DUF1659, Protein of unknown function (DUF1659). This family consists of hypothetical bacterial proteins of unknown function.	8.20418e-14
CP020953.1\|AWI03497.1\|681022_681280_+\|hypothetical-protein	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.00821086

>CP020953.1|AWI03499.1|682423_683620_-|dipeptidyl-aminopeptidase
MMNLVFKDDQFEFQTLRLLGETAFGAADIAEVISTAEKIEEGNYASWCNEWSKTAKRLHKIANDNYLKGHTISAKKEYLRAANYYRTAEFFLHENPNNTKIDELYNANLECFSYVMKLNKPCIKNIEIPYENTVLPGHYYQLENSNEPKPVLIAMTGFDGTKEELYGMAMIALEHGMNCLTFEGPGQGEVIRKKKLFFRHDYEKVITPIVDYLLTKKEIDPNKIILWGQSLGGYLAPRAAAFEHRLAACIANEGIYDFLGGFMSELNVTREQFLNSLLLNTEKFNKSIYDQMKINSTLRWGVSHGMYVFGVDSPAEFVLKAKNYYLEEIPEKIQCPTLITDGENEIFFKGQAKCLYNTLTCNKDYIFFTSEEGAGSHCQEGAKLIANERIFSWIETIL
>CP020953.1|AWI03498.1|681440_682343_-|protein-RarD
MKNSLYKCNKRIGIFYSAAASTIWGFLPLYWKLLRKIPADELLAHRIIWSFVFVILVLTFTKKLRVFIKQFSDKKTILLISICSVLISINWFIYIWAVNSNHVIEASMGYYINPLISVLLGVIIFKEKLNFYQKVSLVFAATGVLFIIIEYGKIPWISIMLAISFASYGLFKKMVTIESIIGIALETLIMTPISLIYIIFKQINGLGYLSMINLQTMCLLLSSGIATVIPLLLFAKGAKRIELSVIGFLQYISPTISLILGIFLFHEEFTNYDIVSFGLIWIALIIFSLSNFFTVQNNHS
>CP020953.1|AWI03497.1|681022_681280_+|hypothetical-protein
MKLLIQSKVYLFRNSGEFKERRSLMMTMLFCSAIALLSLSFTSNIWWLLFSSLLVGLTSITQMLIVNTPFSGTDTDIKVKELLEK
>CP020953.1|AWI03496.1|680355_681045_+|hypothetical-protein
MSANLNSIYSSCINNTSYTQRLSTEKTINSKSTDSNLFATKLENEKKSDTYINDLKNCFPKTTVTVRSMTAKEVGDYREEWKGQPNDYSGFKHDIVVSSKVLEKMEKDPEYAEQMMKKIKKAAVPEGFGNATIYEYKVVVRDDGEIETWVCADCMNGKNKKVYYDNDDDKKKAEKKKLKLIYENKRIYEQWRVQALSDEKIKTNQFINQQYFFHAGVINKIRNEVINSK
>CP020953.1|AWI03495.1|679929_680226_+|hypothetical-protein
MDNTNLTKNRARILSIVAIIVPLATFITMMFEFFHAKTIKGITPSFTLFICILGIIAAFISKKMFPSKLGKISLILTIVLTILNLIPFLYFIVFFSIP
>CP020953.1|AWI03494.1|678916_679720_+|hypothetical-protein
MKIGINVSFKELHLIKDIFKEYNIQHIQIALPANIDMISDDICNMISKYKIENPGIEISIHAYPFNFAESVEVVRNTWIELAHKTIDFANNIEAVFVNFHCGYGIDAGKRKQHDEVVRKLIPVLYKITDLGVRNNIEIHIENLYSEQRNSDFCKIGDRLSDFQKIFESIDSSMLKLCYDYGHGNLDENGIDILRNFYYRLGSIHAHDNDQLTDIHWPIGNADLGSIKWDEEIKFLNSFNYKGAFILEGYQNDKLESLKYLKKLNLMK
>CP020953.1|AWI03493.1|677895_678423_+|isopentenyl-diphosphate-delta-isomerase
MEMIDIYDELGQKCGKIEEKYESHKKGLIHKGVCVWIVNSNDEILLQTRNSQVMFPNMMDISFSGHIQAGETSLEAAIREGKEELGIDLEIDKLQYLFSCREYGEVDGYIENEIDDVFLYRKDILLEDYSFYDNEVKEVSYVSLDNFKIMVETHSTMLMPYKTHYIFLLTALGRR
>CP020953.1|AWI03492.1|677121_677832_+|metal-dependent-hydrolase
MTELITLQLLFKRGEMKFYIYPVVIKNNDDLILIDTGFPMFLPIIEKAFEKKGLDIRKLQQVILTHHDHDHMGAVKEIVKKYPSVKVKCSAEQIPYVLGKKKSLRLEQAEKLGADAGFIQMIKSIEYLDSALEVRDNEIICNGVKVIETSGHMPGHISIYIESMKTLISGDMLVLEDGVLCIADEQFVLDKVAEINSLKKILNLDIEKIICFHGGEYKSNNLKEDLKKIIAKGYKS
>CP020953.1|AWI03491.1|675835_676834_+|aminopeptidase
MKLILKLGTIIAISLAFSSCSYGVSKQNTKEETKSNEQLVQVQAPVKIPTIEETVNTLCSDEFEGRLVVSKGNEKAGEYISKTFKDIGLTSLFGDSYYEPYAQEVYKKYGVIDKNDKSENKGVHNVIGVIKGKDSKDAVFISAHFDHVGYEDGKIIRGALDDASGMSALIKIAHTLKEYSKEKPFDMDIVLCAFNGEEEALSGSRAFVNDIKSKSVYSNMYNINIDCIGGKKGGTNLALKDKSKISGKLYNSIKVTLKKDNIGFGDTAVKGSGDHMSFQRASIPNVFIVQEGIEKLVHKPTDTPDILDYGQIYRIANAISDFVEANNGVIFN
>CP020953.1|AWI03490.1|674225_675359_+|cell-filamentation-protein-Fic
MAKAYEPFKSPIDNLININEFINELLEANKLVGVYQVLLNRSKIDPELLLTPITLQEAIQSTKIEGTQVTLDDMLEYGADENKKTNDIQEVLNYSEALRVGEGLIGRIPISTRLIREMHEILLSGDVRGKNRNPGEFRRIRNFIGPEGCTIQTASYIPPEPQLVPEYMSNLEKYINEPKDNLHDLIRIAIIHAQFETIHPFLDGNGRIGRILIPLYLFDKGVIDSPNFFISESLEKDKFKYYKLLNDIRIEVCNEDDKCKMLASQRWNTWIKFFITAIINQANQNIKLIEKIDELYNITIDESRKIINSNKLIDIVNVMFKLPIFNKKRILEMVDIPSSTLGVYLNKLEEKQIIYSDGKSRNKKYYFYDLINILRQQ
>CP020953.1|AWI07705.1|683924_684485_+|TetR-family-transcriptional-regulator
MLEVAYKLFCENGYYKTNSIEIAKIAGISIGCFYSYFKDKDAVFYEILDLYNKNFLEIVNNIPNIAEISKGDKKEGMLLIANKLIMIHESSKDLNRELNILYNSNTKVASVVDEQHKKIRNIIREWLCFHENDIKVTDIDSAIIIIEEISNSIINRIVFKKDDIDSNRILNAGIEAINKYLFSEKY
>CP020953.1|AWI03500.1|684716_685172_+|hypothetical-protein
MEIARLLNKSSNDYELRFIFFGGEEFASIGARYYLSQLSDNDKKDIKANINMDSIAQKNHDNPYIFTVDGKSNFATELLKNDSKNKDIIIKKMNREISDYVEFDKCGIPSLCIGQSYDKNLNINGPEDKVSIVDKTKLKLVADIVVRALSN
>CP020953.1|AWI03501.1|685235_686198_+|DNA-binding-transcriptional-regulator
MSKNDNMLAILWMLNSGAKITAKQISERLEINIRSVYRYMDALCVSGVPIISEPGHNGGYSLLNNFIRTPLFFDLEEKKSLLHAATFAMEAGYPFMEALNRATSKLKMFSNQEQEKVLNRHLMGFEVVSRICDPAVKPILMIIEQAVANECSVEIEYCTGYEGHPKHRVVDPYGMLYWNDKWYVIAFCHLRNEIRSFRVDRIVNIISTKNTFKRPEAFSAREFFTKNLLSNTESKAGLCTLVIEGKSEALNDLCAHWFLGYHLTERTECRANFLMDENSIHTYVPHILLPYGKSIKVLEPNSFKDAMVAILKDLMDYYLH
>CP020953.1|AWI03502.1|686290_686917_+|glutamine-amidotransferase
MKNIVYIYVFDTMADWEIGYLSAEINSGRYYKKGLMPLKVVTVGITKAPITTMGGLKVLPEIELKECNAHDAAALILPGGNTWTEAIHAPIITMAEKYLEKGIVVGAICGATIGLAMGGVLDKRAHTSNDLGYLKMVCPSYHGEKYYKQECAVTDGSLITASGIAPLEFALHILKILDVFLPETLDSWYNLYKTQEPKYFFKLMNSIQ
>CP020953.1|AWI03503.1|687177_687645_+|glyoxalase
MKFKNPMLVVTDMEKAKTFYKDVLGLRVIMDFGANVTLTGGVALQTKESWKDFIQKNDNEIRFNGNESELYFEEDNFDSFINKLNSFNYIEYVHHVYEHKWGQRVVRFYDLDKHIIEVGENMKVVCKRFLDSGLTVEEIAKRMDVPVKFVQAYTK
>CP020953.1|AWI03504.1|687983_688208_+|hypothetical-protein
MAAKSTKLESSMVLKYKDGTDKNGKDKIKKLNFSKVKTSAVDQDVLDVAKSIEILIGKTLDELIRVDQNGITNA
>CP020953.1|AWI03505.1|688988_690119_+|transposase
MIKAIKIRLFPSKGQEILMFKSCGVMRFAYNWGRARWEELYKQSLEPSKAKIKKEFNNTIKNQENYKWLKEVSGQITAQAFEDLNNAYKNFFKGLAKYPRFKTKRKSRKSFYVRYDRLYFKEDIVYIEKIGKVKCKTNYDIPILPNYNNPRCHFDGKYWYLTLGFEHNENQVELNKDLSIGIDLGVSNLAVVNCIDKPIKNINKCTKVRKLKKRLKRLQKQVSRKYEANRQDSKYNKTNNIIKLEKVIKLVYRKLNNIRANHIHQTTNMIIKLRPYRVVMEDLNISGMLKNKHLSKAIQEQGFFEFIRQMQYKCKFNGVEFVQVDKFYPSSKTCSCCGNVKKDLKLKDRMYVCDICGLEMDRDKNASINLGNYKIV
>CP020953.1|AWI03506.1|690269_690431_+|hypothetical-protein
MKFIKLYKVFICIYRVYATVIIAKNIFFSSGGDLKAIDSAHIIDRNKTSLSVK
>CP020953.1|AWI03507.1|690578_690740_+|YvrJ-family-protein
MGDLVNLIGNVGFPIAVSIYLLVRIEGKMEILTQSINNLSNVINDAKKNSNSK
>CP020953.1|AWI03508.1|690742_691285_+|RNA-polymerase-subunit-sigma-70
MVFIIEELVKKARSGNRAAVDEIIGKFKYFVIKQASKYSIPSYDFEDLVQHGYLSIIKAVNLYNTGGGSFTTYCTNAVINNFKALLKGQIKHYREIQDENAINMEAYDFTLEDEVIAYEESAKLKEALYKLQGMEKSIIESVYIKGTTLRKAAADCGINYRRAIKVRREALRKLRKYLSL

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Crispr_ID: CP020953_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_2

2451786-2451889

Orphan

Consensus_repeat	Method
CCAGCTCCACAAGAACAATTTGCTTGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020953_2

>merge|CP020953|2|2451786-2451889|CRISPRCasFinder
CCAGCTCCACAAGAACAATTTGCTTGAGCACCAGCACCTTGGAATGGGAATCCTTGTGAATAAGGGAATCCTGCCCCAGCTCCACAAGAACAGTTTGCTTGAGC

>CP020953|2|2|2451786-2451889|CRISPRCasFinder
CCAGCTCCACAAGAACAATTTGCTTGAGC	ACCAGCACCTTGGAATGGGAATCCTTGTGAATAAGGGAATCCTGCC
CCAGCTCCACAAGAACAGTTTGCTTGAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI04985.1\|2445122_2445950_+\|lipase	unknown	unknown	gnl\|CDD\|378820
CP020953.1\|AWI04991.1\|2450412_2451075_+\|hydrogenase-accessory-protein-HypB	unknown	unknown	gnl\|CDD\|349775
CP020953.1\|AWI04984.1\|2443760_2444900_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI04989.1\|2448615_2450016_+\|Ni/Fe-hydrogenase	unknown	unknown	gnl\|CDD\|380187
CP020953.1\|AWI05002.1\|2461523_2462435_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176125
CP020953.1\|AWI04992.1\|2451071_2451512_+\|hydrogenase-maturation-protease	unknown	unknown	gnl\|CDD\|99872
CP020953.1\|AWI05001.1\|2460712_2461225_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
CP020953.1\|AWI04988.1\|2447764_2448598_+\|Ni/Fe-hydrogenase	unknown	unknown	gnl\|CDD\|224654
CP020953.1\|AWI04986.1\|2446045_2446993_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl\|CDD\|224619
CP020953.1\|AWI04995.1\|2454460_2455318_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|223364
CP020953.1\|AWI04997.1\|2456403_2457684_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
CP020953.1\|AWI04994.1\|2453428_2454442_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|181535
CP020953.1\|AWI04999.1\|2458749_2459874_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|270349
CP020953.1\|AWI04990.1\|2450058_2450409_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468
CP020953.1\|AWI05000.1\|2459880_2460696_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|223247
CP020953.1\|AWI04993.1\|2452445_2452652_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI04987.1\|2447298_2447721_+\|cytochrome-B5	unknown	unknown	gnl\|CDD\|227229
CP020953.1\|AWI04983.1\|2443441_2443702_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377743
CP020953.1\|AWI04998.1\|2457661_2458735_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|376510
CP020953.1\|AWI04996.1\|2455321_2456383_+\|3-dehydroquinate-synthase	unknown	unknown	gnl\|CDD\|341474

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI04985.1\|2445122_2445950_+\|lipase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	1.30438e-84
CP020953.1\|AWI04991.1\|2450412_2451075_+\|hydrogenase-accessory-protein-HypB	gnl\|CDD\|349775	cd05390, HypB, nickel incorporation protein HypB. HypB is one of numerous accessory proteins required for the maturation of nickel-dependent hydrogenases, like carbon monoxide dehydrogenase or urease. HypB is a GTP-binding protein and has GTP hyrolase activity. It forms homodimer and is capable of binding two nickel ions and two zinc ions. The active site is located on the dimer interface. Energy from hydrolysis of GTP is used to insert nickels into hydrogenases.	2.78923e-95
CP020953.1\|AWI04996.1\|2455321_2456383_+\|3-dehydroquinate-synthase	gnl\|CDD\|341474	cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol condensation. The binding of substrates and ligands induces domain conformational changes. In some fungi and protozoa, this domain is fused with the other four domains in shikimate pathway and forms a penta-domain AROM protein, which catalyzes steps 2-6 in the shikimate pathway.	1.00095e-160
CP020953.1\|AWI04989.1\|2448615_2450016_+\|Ni/Fe-hydrogenase	gnl\|CDD\|380187	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit. Members of this family are the large subunit of the periplasmic nickel-dependent hydrogenase. Some members contain a selenocysteine residue.	6.78924e-154
CP020953.1\|AWI05002.1\|2461523_2462435_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176125	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold. GltC, a member of the LysR family of bacterial transcriptional factors, activates the expression of gltA gene of glutamate synthase operon and is essential for cell growth in the absence of glutamate. Glutamate synthase is a heterodimeric protein that encoded by gltA and gltB, whose expression is subject to nutritional regulation. GltC also negatively auto-regulates its own expression. This substrate-binding domain has strong homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.60825e-82
CP020953.1\|AWI04992.1\|2451071_2451512_+\|hydrogenase-maturation-protease	gnl\|CDD\|99872	cd00518, H2MP, Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing and assembly with other subunits. Hydrogenase maturation endopeptidases are responsible for the proteolytic processing, liberating a short C-terminal peptide by cleaving after a His or an Arg residue, e.g., HycI (E. coli) is involved in processing of HypE, the large subunit of hydrogenase 3. This cleavage is nickel dependent. This CD also includes such hydrogenase-processing proteins as HydD, HupW, and HoxW, as well as, proteins of the F420-reducing hydrogenase of methanogens (e.g., FrcD). Also included, is the Pyrococcus furiosus FrxA protein, a bifunctional endopeptidase/ sulfhydrogenase found in NADP-reducing hyperthermophiles.The Pyrococcus FrxA is not related to those found in Helicobacter pylori.	2.15947e-15
CP020953.1\|AWI05001.1\|2460712_2461225_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	3.06261e-57
CP020953.1\|AWI04988.1\|2447764_2448598_+\|Ni/Fe-hydrogenase	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	3.81983e-94
CP020953.1\|AWI04986.1\|2446045_2446993_+\|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	1.21672e-47
CP020953.1\|AWI04995.1\|2454460_2455318_+\|prephenate-dehydrogenase	gnl\|CDD\|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	3.46131e-69
CP020953.1\|AWI04997.1\|2456403_2457684_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	2.53258e-176
CP020953.1\|AWI04994.1\|2453428_2454442_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	0
CP020953.1\|AWI04999.1\|2458749_2459874_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|270349	cd13631, PBP2_Ct-PDT_like, Catalytic domain of prephenate dehydratase from Chlorobium tepidum and similar proteins, subgroup 2; the type 2 periplasmic binding protein fold. Prephenate dehydratase (PDT, EC:4.2.1.51) converts prephenate to phenylpyruvate through dehydration and decarboxylation reactions. PDT plays a key role in the biosynthesis of L-Phe in organisms that utilize the shikimate pathway. PDT is allosterically regulated by L-Phe and other amino acids. The catalytic PDT domain consists of two similar subdomains with a cleft in between, which hosts the highly conserved active site. In gram-postive bacteria and archaea, PDT is a monofunctional enzyme, consisting of a catalytic domain (PDT domain) and a regulatory domain (ACT) (aspartokinase, chorismate mustase domain). In gram-negative bacteria, PDT exists as fusion protein with chorismate mutase (CM), forming a bifunctional enzyme, P-protein (PheA). The CM in the P-protein catalyzes the pericycle isomerization of chorismate to prephenate that serves as a substrate for PDT. The CM and PDT are essentail enzymes for the biosynthesis of aromatic amino acids in microorganisms but are not found in humans. Thus, both CM and PDT can potentially serve as drug targets against microbial pathogens. The PDT domain has the same structural fold as the type 2 periplasmic binding proteins (PBP2), many of which are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.23818e-98
CP020953.1\|AWI04990.1\|2450058_2450409_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	7.79937e-37
CP020953.1\|AWI05000.1\|2459880_2460696_+\|shikimate-dehydrogenase	gnl\|CDD\|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	6.37107e-92
CP020953.1\|AWI04983.1\|2443441_2443702_-\|hypothetical-protein	gnl\|CDD\|377743	pfam06961, DUF1294, Protein of unknown function (DUF1294). This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.	6.36365e-24
CP020953.1\|AWI04987.1\|2447298_2447721_+\|cytochrome-B5	gnl\|CDD\|227229	COG4892, COG4892, Predicted heme/steroid binding protein [General function prediction only].	9.38531e-27
CP020953.1\|AWI04998.1\|2457661_2458735_+\|chorismate-synthase	gnl\|CDD\|376510	pfam01264, Chorismate_synt, Chorismate synthase.	0

>CP020953.1|AWI04992.1|2451071_2451512_+|hydrogenase-maturation-protease
MKKIVIGVGNKLMLDDGVAIFLLENIKSVLEDNDIEVIIGETDVDFCLSKLNNVDEFYIADSYFSDKVPGDLTFKKIKDIKKIRKQCAAHSLGLMDLIDIYGIEVKGYFIGIEIGRIDMNIGLSNDLQVEFKDICSKVLNFILNVT
>CP020953.1|AWI04991.1|2450412_2451075_+|hydrogenase-accessory-protein-HypB
MSEIKVIVNMLHTNEEIALENKKIFDDENIFVINLMSAPGSGKTSILEKLICSIKKHLNIAVIEGDIYTTKDADRIEAKGIPVVQINTSGACHLDADMIREAVLNLDLRNLDMIIIENVGNLVCPAEFEVGEDMKACVLSITEGNDKPLKYPLMFEKSEVLILNKIDLIDFTNFSKEEFYKDINTVNSKIKVFETSCTNNKGIDELSNWILEKANEKISI
>CP020953.1|AWI04990.1|2450058_2450409_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MVKLHEISIMESTIDIVLKKAEECNFKIIRKVTLKIGELSGVMDEALNFAFSELKNYSILKDAELCIDKIKARAYCKNCDINYDIDHFNKLCPICGGFSSKIITGYELYLYSIEGE
>CP020953.1|AWI04989.1|2448615_2450016_+|Ni/Fe-hydrogenase
MDTRITIEPITRISGPLSMEVEIEKNKIVNAKSSGVLFRGFESMLKGRPPLDAVYFTERICGICSTAHGVVASLALEDALKVKPDKNGVRIRDFAHGADFIQNIIRQICIFVFPDYAKIKEVPGSIDYDFRLPDKLTQKISEDYLKALEYSRFAHEMVAIIGGKAPHNHGVFVGGTTANLDASKIIRLKYLLQQIHEFICSDMIEDINIISAYYPEYFNMGAGTKNLLTFGLFNDLPEKELVYVYPSVYIDDKKSSLDVDAIKEGVEYSWYKNTKSNTVPSEKPSELDIKKPGAYTFIKAPRYRGKVVQVGPLARMILGGYYKYNVSTMDRLIARVLEGKILSEKMLELLDFIRPIPAVQNQYIIPESAEGKGLYDAVRGALGHWIKIENGVIKNYDIITPTVWNLSPKDSVSQHGAIEESLIGTEIQNVKNPVEIGRIIRSFDPCVSCATHVTTDCCKDYNIEIV
>CP020953.1|AWI04988.1|2447764_2448598_+|Ni/Fe-hydrogenase
MPLMKLVYEAIDKINRGIVKKPNFIWLECTGCEGNIISFLNADKPDFKYFLNQMVNLKYSNSLMQPDGERAYENFLETLNTDFILGVEGAITKKDNGFYTLMAYYNGKQISAAEGVSLAAAKTKKIIAIGTCASFGGISAAKPNPTGCMSLSEFLNRKIINIPGCPANPLWVIGTIASLILYGEIDVDDKGRPLMFYRETNHTDCERRSYFDNNIFAKKLGEHECMFKLGCRGPITKAYCPLGKWNSRMNWPVENNTPCIGCASEYFPDGTEPFIRY
>CP020953.1|AWI04987.1|2447298_2447721_+|cytochrome-B5
MDKRTSQELKNMLQEINYYRKLINDSICPYEKIYLINTIAYKTTEILDDINMNENMEREMPIQSSKEFTIEELAEYDGSMGKPAYVAVNGIVYDLSYISVWGGGTHFGLYAGRDLSKEFKSCHGNKVEMLKNLPVVGKIK
>CP020953.1|AWI04986.1|2446045_2446993_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MGKKINNLLKIIVVLVFFCGIFSIAKYYIYKHEHINTKNINMNLYIDTTDSVSKDKLQVNWKQLAAIDGVRYKNDFSKVSGENITKLASMFLVKNTSVHNVGNSKYKLLSLDEVLDKLSLKKSEKEKVYRYLKDLDSVALNRKLKDDPSYKKFIDELTPEAIDIYNRYGILPSVTISQAILESGWGKSELASKSNNLFGIKADSSWKGKSVIMKTSEYYDKIIKDSFRVYASKSESLKDYGDFLYKNKRYKDKGVLSALNYRDQAEAIEKAGYSTVQDKKGNEIYADLVIKIIKENNLQLIDNKVQLEKSQALSK
>CP020953.1|AWI04985.1|2445122_2445950_+|lipase
MFNKLQGEFNAFDGTKLFYSKDIVDSAKAVVVIVHGLCEHLERYNYFTKKLNDFGYTVYRFDNRGHGKSGGERGYIENFQDFFKDADKVVDMALEENKGLPVFMFGHSMGGFITAGYGMKYKNKLKGQILSGPAITEPHAFKDLKKDNYFEKHPREKSPNALSKFICRDENVVKDYDNDPLVLKETNIKLLGEAFIKGSKWISENIKNYEYPCLILHGEMDRIVKNEASKWMFNNINSDDKSMKIYPKCYHEILSEKEEKDDIIEDIHRWIEERI
>CP020953.1|AWI04984.1|2443760_2444900_-|hypothetical-protein
MDKFTDELRAKKVINRNDIQTFKNYIDKKYAKNQTKERASMLSNTIHHILYTKLEGIPNEYKSSIKVNILKNTFAKNKTSITMYDVFDCCLMENKLKTNCTSLLTNWINLNIDNPIKDEDLKSYLGIKEEVNHKKKVKNTDDNKLIVNMTDSNINVENNAPNYKFLNTYLKYLGTLKFSNKTIITFIVIIFLIMFYPISKVAYSMSSKSNFKFYSFKEKSVSQGLLQNTNCKFSNAHLPDYMKYKDIDEVKLKKFLTLHKSLLVKEPYFSTIMSVAKEFNLNPLVLFSITGQEQSFVPEDTKFASKIANNPFNVFHSWQEYNTDIKDASKIAARTVINLSKDMPKDSDPFLWVGKSYAEDKNWGKGVEAIFKDLSEKCK
>CP020953.1|AWI04983.1|2443441_2443702_-|hypothetical-protein
MKVFLCYILVINLYGIFLMHSDKSKSQKGKWRIPEKTLFVTSLLLGSPGILIGMYLFRHKTKHKRFTIGIPVILIIQIFIFAKYFS
>CP020953.1|AWI04993.1|2452445_2452652_-|hypothetical-protein
MIILTILLSAVVFILLGSVIAAVALPIFAFIFAIGIVISILALIFKIIFAGPLFILMIIIALYYFFKR
>CP020953.1|AWI04994.1|2453428_2454442_+|3-deoxy-7-phosphoheptulonate-synthase
MVVIMRCGATREEIERIKERIEMEGCKVNLIQGENQCILGIVGDTTKLDPDKIQANECVERVTKVQQPFKLANRLFHPSNSEIKVNDQVIGGDKIAIMAGPCSVESEEQILEIAKTVKESGAGFLRGGAFKPRTSPYSFQGLKQEGLELLKLARKETGLPIVTEIMSADMIDTFVEDVDVIQVGARNMQNFDLLKQLGKTRKPILLKRGLSATIEELIMSAEYIMAGGNENVILCERGIRTFETYTRNTLDLSAIPAIKRLSHLPIIVDPSHSAGMWWMVEPLAKAALAVGADGLIIEVHNDPANAKCDGQQSIKPERFKELMKELSQIAKIEKKAI
>CP020953.1|AWI04995.1|2454460_2455318_+|prephenate-dehydrogenase
MEECDFNFNIVIVGLGLIGGSYAMALRKLNPLSISGIDVDENSLKEAVNRGIIDQGFTDGKEALRKADLVIMATYPEEIVKFMKSNIGDFKKGAVITDTCGIKEGLIDIINSFLPDELDFVGGHPMAGKESKGIKVASDDIFNNANYIITPTERNLKENIMLIEKMARAIGCKKVISISPEEHDKIISFTSQLPHVIAVSLMDSDFAENNIETFTGGSFKDATRVAVINSTLWSELFFLNSDNLINEIERFQKSMEKIKNAIMSEDENTLKHIFRNATARRKKMV
>CP020953.1|AWI04996.1|2455321_2456383_+|3-dehydroquinate-synthase
MKIIEVKLKDNSYKIYIEKNIFEKIAAYLKENHENKKILIVTDKNLEKLYVKALNKTIQDKNFKTKIISIEPGEKSKSIDTLKKLYEDFTNFNLTRGDLILTFGGGVVGDLGGFAAATYLRGIPYIQIPTSLLAQVDSSVGGKVAVDLPWGKNLVGSFYQPKAVFIDPELLKTLDKRFLHDGLAEVIKYGCIRDESIFRTLMNYKDDEELLENIEKIIYTCCNIKKKVVESDEKDLGERMILNFGHTLGHAVEEYFNYSKYTHGEAVAIGMAEITRRSEELNITKIGTYNFIKKILMKYELPYRRIEMDKEKILHTIKLDKKSSGENINLILLNKIGEGFIKKVSIKEIENYI
>CP020953.1|AWI04997.1|2456403_2457684_+|3-phosphoshikimate-1-carboxyvinyltransferase
MKYVMINPSNLSGKVEVPTSKSACHRAVICAGLSNGTSNISNVVFSEDVEATCDVMKNLGVRIKKEKNSLQIRGLEKLEPINSNMDCSESGSTLRFLIPVGATTGEKLTFKGKGKLIERPLKCYYNIFDEQKLKYDNANGKLPLTIEGKLKPDEYKVRGDISSQFISGLMFALPLLDGDSKIIITTELESKPYVDLTMDMLKKYGIDIENREYKEFIIRGNQSYKSSDCEVEGDFSQAAFWLAAGLLGNDIVCEGLDINSLQGDKAILNIIKSMNGKISIQGNKIRAVPSKTKGTIIDASQCPDLVPILTSLAALSEGTTEIVNAARLRIKESDRLSAISTELNRLGADIEEKEDGLIIRGKESLKGGEVQSWNDHRIAMALAVASIKCNEPVIIKDASCVKKSYPDFWKHFRALGGNIDEWSLGQ
>CP020953.1|AWI04998.1|2457661_2458735_+|chorismate-synthase
MSGVWGSKVRLSIFGESHGKAIGINIDGLKPGIELDLDYINKEMKRRAPGGNELSTPRKEEDNFEILSGYFNGRTTGTPLCAIIHNKNQHSKDYEKTKNLMRPSHGDLTGYVKYQGFNDYRGGGHFSGRITAPLVFAGAICKQILEKKGIFIGSHIKSIAKIEDVSFNMTEIENEILKSLNESKFPVLTEQIGINMKNSILKAKEEMDSLGGVIETAVNNLPVGLGEPFFDSVESVLSHLLFSIPGVKGVEFGEGFNISKMKGSEANDGFYIENEKIKTYSNNNGGILGGITNGMPLIFRTAVKPTPSIAKIQNTVDIQKRENAKIEIKGRHDPCIIPRALPVVEAAAAIAIIQFID
>CP020953.1|AWI04999.1|2458749_2459874_+|bifunctional-chorismate-mutase/prephenate-dehydratase
MEDLNYLREQINEIDEELVKLFKKRMSVVSNVAHYKIENHMEVLDSSREDQIINKHLKKVEDKTLQNYLKEFLQDLMSISRESQKEILSKVSCNCEADEDSEFKVGFQGVPASFSHQAVNEYFGNNVKSEHFKSFKDIFEAVQKGDIKYGVLPIENSSTGGISEVYDLMREYGFYIVGEKCVKVDHNLMGIGNAEICDINEVYSHTQGFLQCKEFFDVHSDWRLIPYFNTAKSAEYVSKENLKNKACVASKKAAEFYGLKILKENINYNSNNYTRFIIIGRKEKCDVNCDKISVILSISHEVGALYKILKHFSDNNLNMMKIESRPIVGKSWQYFFYIDFQGNILNENTRSALKTIEEESLYYKFLGNYKGEVS
>CP020953.1|AWI05000.1|2459880_2460696_+|shikimate-dehydrogenase
MGNLYGLIGKTLGHSISPKIHSLILEDLNLNGFYNLFEVNNEDLKKAVIGLKALGAKGINVTIPHKVNIMEYLDDVSVEASKIGAINTIDFKGNKLIGYNTDYYGFGESLKREEIDTYNKEAVILGTGGASKAVFHYLLDNGINDIIFVSRIPENAKDKLKDFKVISYEDMNKLKCKDIIINCTPCGMYPKIESCSVDKNILSKFSSAIDLIYNPIETIFLREAREIGVKTVNGLYMLVAQAIASQEIWQQMKIGQEIKKHIYKVIEKCNC
>CP020953.1|AWI05001.1|2460712_2461225_+|shikimate-kinase
MKGVINMVSKNIVLIGMPGSGKTTIGKILYEKLRTDFIDMDDYIEDREGKTITDIFKNGEDYFRKLEKEAVCEVSAKKSAIISTGGGVIKNFSNIENFKKNGIVIFIDRPVENIAKDINVLSRPLLKDGVGKLYELLDERYELYKKYSDFRIENNGKIEDVIEKILELAK
>CP020953.1|AWI05002.1|2461523_2462435_-|LysR-family-transcriptional-regulator
MNLKQLQYFRVLAQTEHYTKAAEKLYITQPSLSYSISELEREFGTQLFEKEGRNVKLTKYGRFFLSYVEKALDELDLGKNLLLKMVSPTEGKVDLAFIYTLGSKFVPNIVQSFLNETNYKNVDFSFAQGNTQYLINNLKEGKFDLVFCSFVENEPNIDFIPIAQEELVIIVPKDHPLSNYKSISLSETSPYPFVFFSNESGLRPLIDKMFKDSNIVPKIACEAEEDSAIAGFVAINYGMAIIPNIPSLKNFDVKILKIKQPNYKRFIYAATVKNRYNTLATDSFRSFAIKYGKKNYLDTNKCI

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Crispr_ID: CP020953_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_3

3361921-3362544

Orphan

III-B

Consensus_repeat	Method
ATTTAAATACATCCTATGTTATAGTTCAAC	PILER-CR
ATTTAAATACATCTTATGTTATAGTTCAAC	CRISPRCasFinder
ATTTAAATACATCCTATGTTATAGTTCAAC	CRT

9 spacers

The CRISPR arrays of CP020953_3

>merge|CP020953|3|3361921-3362544|PILER-CR,CRISPRCasFinder,CRT
ATTTAAATACATCCTATGTTATAGTTCAACAAATTTTGTACCCCTTCATTTAATAACTCATTTTCTATTTAAATACATCCTATGTTATAGTTCAACTTACTATGTCAAAGCAATAGCAACTTACTTGTTTTATTTAAATACATCCTATGTTATAGTTCAACCTCCAGAAAATCGTAATTTGATAATAGGACTTGCAAATTTAAATACATCCTATGTTATAGTTCAACTTTTCCATTCATTTATTATTCCTCCCTTTCACTTTAATTTAAATACATCCTATGTTATAGTTCAACTATTTGTTTACAAGAAGCTCAACTTATACATATGCAATTTAAATACATCCTATGTTATAGTTCAACATATAGTGAAAAAGCATTAAGAACAGCAGTAATGTAATTTAAATACATCCTATGTTATAGTTCAACTAATCCATTAGATAATGAACTAAATATACCAATGAAATTTAAATACATCCTATGTTATAGTTCAACAGAAGATATTCCAGACTATACACCGTACAAAATATAATTTAAATACATCCTATGTTATAGTTCAACAACAGAAAAATCTATTATATTTTATAATAAAGATAAATTTAAATACATCCTATGTTATAGTTCAACC

>CP020953|3|1|3361921-3362543|PILER-CR
ATTTAAATACATCCTATGTTATAGTTCAAC	AAATTTTGTACCCCTTCATTTAATAACTCATTTTCT
ATTTAAATACATCCTATGTTATAGTTCAAC	TTACTATGTCAAAGCAATAGCAACTTACTTGTTTT
ATTTAAATACATCCTATGTTATAGTTCAAC	CTCCAGAAAATCGTAATTTGATAATAGGACTTGCAA
ATTTAAATACATCCTATGTTATAGTTCAAC	TTTTCCATTCATTTATTATTCCTCCCTTTCACTTTA
ATTTAAATACATCCTATGTTATAGTTCAAC	TATTTGTTTACAAGAAGCTCAACTTATACATATGCA
ATTTAAATACATCCTATGTTATAGTTCAAC	ATATAGTGAAAAAGCATTAAGAACAGCAGTAATGTA
ATTTAAATACATCCTATGTTATAGTTCAAC	TAATCCATTAGATAATGAACTAAATATACCAATGAA
ATTTAAATACATCCTATGTTATAGTTCAAC	AGAAGATATTCCAGACTATACACCGTACAAAATATA
ATTTAAATACATCCTATGTTATAGTTCAAC	AACAGAAAAATCTATTATATTTTATAATAAAGATAA
ATTTAAATACATCCTATGTTATAGTTCAAC

>CP020953|3|3|3361921-3362544|CRISPRCasFinder
ATTTAAATACATCCTATGTTATAGTTCAAC	AAATTTTGTACCCCTTCATTTAATAACTCATTTTCT
ATTTAAATACATCCTATGTTATAGTTCAAC	TTACTATGTCAAAGCAATAGCAACTTACTTGTTTT
ATTTAAATACATCCTATGTTATAGTTCAAC	CTCCAGAAAATCGTAATTTGATAATAGGACTTGCAA
ATTTAAATACATCCTATGTTATAGTTCAAC	TTTTCCATTCATTTATTATTCCTCCCTTTCACTTTA
ATTTAAATACATCCTATGTTATAGTTCAAC	TATTTGTTTACAAGAAGCTCAACTTATACATATGCA
ATTTAAATACATCCTATGTTATAGTTCAAC	ATATAGTGAAAAAGCATTAAGAACAGCAGTAATGTA
ATTTAAATACATCCTATGTTATAGTTCAAC	TAATCCATTAGATAATGAACTAAATATACCAATGAA
ATTTAAATACATCCTATGTTATAGTTCAAC	AGAAGATATTCCAGACTATACACCGTACAAAATATA
ATTTAAATACATCCTATGTTATAGTTCAAC	AACAGAAAAATCTATTATATTTTATAATAAAGATAA
ATTTAAATACATCCTATGTTATAGTTCAACC

>CP020953|3|1|3361921-3362543|CRT
ATTTAAATACATCCTATGTTATAGTTCAAC	AAATTTTGTACCCCTTCATTTAATAACTCATTTTCT
ATTTAAATACATCCTATGTTATAGTTCAAC	TTACTATGTCAAAGCAATAGCAACTTACTTGTTTT
ATTTAAATACATCCTATGTTATAGTTCAAC	CTCCAGAAAATCGTAATTTGATAATAGGACTTGCAA
ATTTAAATACATCCTATGTTATAGTTCAAC	TTTTCCATTCATTTATTATTCCTCCCTTTCACTTTA
ATTTAAATACATCCTATGTTATAGTTCAAC	TATTTGTTTACAAGAAGCTCAACTTATACATATGCA
ATTTAAATACATCCTATGTTATAGTTCAAC	ATATAGTGAAAAAGCATTAAGAACAGCAGTAATGTA
ATTTAAATACATCCTATGTTATAGTTCAAC	TAATCCATTAGATAATGAACTAAATATACCAATGAA
ATTTAAATACATCCTATGTTATAGTTCAAC	AGAAGATATTCCAGACTATACACCGTACAAAATATA
ATTTAAATACATCCTATGTTATAGTTCAAC	AACAGAAAAATCTATTATATTTTATAATAAAGATAA
ATTTAAATACATCCTATGTTATAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI05728.1\|3368260_3368599_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133411
CP020953.1\|AWI05726.1\|3365112_3366504_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694
CP020953.1\|AWI05717.1\|3349698_3350478_+\|cupin	unknown	unknown	gnl\|CDD\|380352
CP020953.1\|AWI05721.1\|3355637_3357185_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225306
CP020953.1\|AWI05733.1\|3373171_3373531_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|380355
CP020953.1\|AWI07782.1\|3360340_3361285_+\|primosomal-replication-protein-N	unknown	unknown	gnl\|CDD\|377797
CP020953.1\|AWI05725.1\|3364066_3364228_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753
CP020953.1\|AWI05731.1\|3370981_3371608_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
CP020953.1\|AWI05723.1\|3361217_3361574_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180750
CP020953.1\|AWI05732.1\|3372011_3372830_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
CP020953.1\|AWI05715.1\|3347403_3349125_-\|hydrogenase	unknown	unknown	gnl\|CDD\|274983
CP020953.1\|AWI05729.1\|3369316_3369901_-\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|153233
CP020953.1\|AWI05719.1\|3352690_3353872_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341026
CP020953.1\|AWI05727.1\|3366810_3367497_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225500
CP020953.1\|AWI05730.1\|3369994_3370759_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP020953.1\|AWI05722.1\|3357381_3359265_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
CP020953.1\|AWI05718.1\|3350622_3352620_-\|2-enoate-reductase	unknown	unknown	gnl\|CDD\|239241
CP020953.1\|AWI05716.1\|3349124_3349376_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239278
CP020953.1\|AWI05720.1\|3354062_3355460_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349922
CP020953.1\|AWI05724.1\|3362752_3363016_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI05728.1\|3368260_3368599_-\|hypothetical-protein	gnl\|CDD\|133411	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	3.8108e-22
CP020953.1\|AWI05726.1\|3365112_3366504_+\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0
CP020953.1\|AWI05717.1\|3349698_3350478_+\|cupin	gnl\|CDD\|380352	cd02223, cupin_Bh2720-like, Bacillus halodurans Bh2720 and related proteins, cupin domain. This family includes bacterial, archaeal, and eukaryotic proteins similar to Bh2720, a Bacillus halodurans protein of unknown function with a cupin beta-barrel fold.	2.35464e-60
CP020953.1\|AWI05721.1\|3355637_3357185_+\|hypothetical-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	3.02058e-15
CP020953.1\|AWI05733.1\|3373171_3373531_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|380355	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain. This family includes bacterial proteins homologous to YdbB, a Bacillus subtilis protein of unknown function. It also includes protein Nmb1881 From Neisseria meningitidis, also of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.52579e-50
CP020953.1\|AWI07782.1\|3360340_3361285_+\|primosomal-replication-protein-N	gnl\|CDD\|377797	pfam07261, DnaB_2, Replication initiation and membrane attachment. This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261.	6.08326e-12
CP020953.1\|AWI05725.1\|3364066_3364228_-\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	5.2209e-07
CP020953.1\|AWI05731.1\|3370981_3371608_-\|N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	0.000272662
CP020953.1\|AWI05723.1\|3361217_3361574_+\|hypothetical-protein	gnl\|CDD\|180750	PRK06921, PRK06921, hypothetical protein; Provisional.	0.000201142
CP020953.1\|AWI05732.1\|3372011_3372830_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	1.4554e-29
CP020953.1\|AWI05715.1\|3347403_3349125_-\|hydrogenase	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	8.06442e-60
CP020953.1\|AWI05729.1\|3369316_3369901_-\|dimethyladenosine-transferase	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	2.88238e-62
CP020953.1\|AWI05719.1\|3352690_3353872_-\|MFS-transporter	gnl\|CDD\|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.67809e-60
CP020953.1\|AWI05727.1\|3366810_3367497_-\|hypothetical-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.61223e-47
CP020953.1\|AWI05730.1\|3369994_3370759_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.85162e-17
CP020953.1\|AWI05722.1\|3357381_3359265_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.97224e-26
CP020953.1\|AWI05718.1\|3350622_3352620_-\|2-enoate-reductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
CP020953.1\|AWI05716.1\|3349124_3349376_-\|hypothetical-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	6.25368e-10
CP020953.1\|AWI05720.1\|3354062_3355460_-\|amidohydrolase	gnl\|CDD\|349922	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily. Peptidase M20 family, ACY1L2 aminobenzoyl-glutamate utilization protein B (AbgB) subfamily. This group contains mostly bacterial amidohydrolases, including gene products of abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate is a natural end product of folate catabolism, and its utilization is initiated by the abg region gene product, AbgT, by enabling uptake of its into the cell in a concentration-dependent, saturable manner. It is subsequently cleaved by AbgA and AbgB (sometimes referred to as AbgAB).	0
CP020953.1\|AWI05724.1\|3362752_3363016_-\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	6.83015e-07

>CP020953.1|AWI05723.1|3361217_3361574_+|hypothetical-protein
MENMKEKKKKQSGIKGTWKDSSEFDALENCPICGGKGYIIRHSPNSQDTIAFCKCREMDNLKRIWSFSGIETRRNKLIFGNYKVYNEATKKCIGSRILEMYKNFIVAISGKENNYRLK
>CP020953.1|AWI07782.1|3360340_3361285_+|primosomal-replication-protein-N
MFGVTESIILQQIHYWLLKSNHIIDGTPWIYNSYEAWHNQISFLCKRTIIRAIKKLETSGVVLSSNFNKSKMDKTKWYTIDYEKLESLCDAFEDSTNSTIDTEGKPSKNSSDISEDDVNKSSNTCLSPSSIESKSPVDNAYFNKTIPEITTENYLKKEEEELTDVVSFYSDNISCASPYEINLLKNFMEDFNSKDLIILGMKQALKSNAKNLRYIEKVLYSWKNKGLRNEKEVINYLNNYKKHKSYYGFHNFKTKSDFFDDYKNLQGGESFGRTWGNYEKSWGYNSEIEETQFGKYEREEEKTEWYQGDMEGLI
>CP020953.1|AWI05722.1|3357381_3359265_-|amino-acid-permease
MLKKFLDVLFGEPLANEQGKHEKYNIPFGLAIMASDAISSVAYGAQEILFVLIVLGASAYQWLTWTSFMIIGLLIILTIAYIQIIKAYPQGGGAYKVAKENIGDKAGLSAGAGLIISYILTVAVSASAGADAIISAFVGLAEYKVIFVVAIIVVLTILNLRGISESSKIFAIPTYIFIFSMIFMIVYGLFKYFVLNIHPQPMFSVPAGTTENLSIFLILRAFSSGCSALTGVEAVSNSVPNFQEPSQKSAKTVMILLAALIFFIFGGTSVLAIFYTAVPIANGPTVVSQIAFGVFHNGIMYYVIQFSTAVILLMACNTAYTGFPMLMYIVGKDGFAPRQFTIRGKRLSFSFGICALSFIACVLVTIFKADTHRLIPLYAIGVFISFTLGQFGMVNHWRKERGKGWIKRAIINGCGAAVTLFTTIIILVEKFSEGAFIVAILIPMIILVQMRIKHHYNKVANGLSISQINLKKLNLRIKYTHTVIVPIASLNKAVIGALKYAQSISDNVIALNISTDMEAMERLKQRWSELDTDITLISKYSPYRAVITPLLQNIVSIADKAGEDEKVTVIVPQFITHGHFGKVLHNHTSFFIRETLLKNNNIIVSTFPYHLSDEEIAAANKKNKKIK
>CP020953.1|AWI05721.1|3355637_3357185_+|hypothetical-protein
MLVLMSEIVNKLLKYNPVFRIKHDLYVKRCKFLDCNDFSLNSDTIYLGSISNLSSDISLNSPANLLFLSDVDIPNYLKNNTMINYILINENIGSSKIFNELQDLFSFHEMEAVCSEKLFKALCKGNNIKQLLDTCMEILGNPLLLTDSYLHLMDYSGFSDNIDEPLWKECIIAGHIPLKYINQRNFNLTIKNTIDSDIMWEIGSLKHKQILARIRLNGTVIAYLKILQYNKEITQSDITIIPEICSVLALSIEKSKYSFFIPKSPIETLIIALLKGRIISEISIEEIKNQLKYPYYYVVSFYIRSHVPDLTTKLYHMKGVISSFFYHYHTVIYADHIITLIDKKTSSAPVIDTTIYNSFIQLLSDNKLTAGISRCFQSLIKISKFHMQSVKAAELGYKLDKEDSPYFYNDYAVYHLFDTCSSKEKLEEFCDPLILQLINRDKENGTSYTLSLYNYIKNNFDMQKTSNFMNVHYNTMKYRLKKIQDILQIDLNNSNTVFHINMSFRILELLGYLKL
>CP020953.1|AWI05720.1|3354062_3355460_-|amidohydrolase
MEEYHRISEIIESKRQLLINISDEIWRYAELKFQEFKSAELLCKTLEKEEFSVQRGAAGIKTAFVASYGKGKPVIAILGEYDALDGLSQEGGVTEEKSIIPGGSGHGCGHNLLGTGALGAAIALRYCIRENNLPGTIRYYGCPAEEGGCGKVFMTREGLFNDVDCALSWHPDTGNYVGTNSCLALYNVYFKFKGKSSHAAMVPHLGRSALDAVELMNVGVNYLREHIIPEARIHYAITNAGGSAPNIVQAEAEDYFSIRAPKISQARGIYERACDVAKGAALMTGTKVEISIDSALSNFVPNKTLEMLIYKSFSKLGTPEYSENDRQLAKKFRTSLSEDNKKSDIHVLTVKELRDKDISEIVNPFNDNEKTLPVSTDVGDVSWIVPTGMFNTACAGFGTPIHSWIFVAQGNTSIAHKGMLQAGKVIALTAVELFKNPEIIQNAKRELKERLGGETYSCPIPKKNQ
>CP020953.1|AWI05719.1|3352690_3353872_-|MFS-transporter
MAEKKYGFVEKAAVLSIALLMYTTSVTTPALGEIAKAFPGVSQEVVKQIAALPSLMMVIFSLVAGQLERFISKKKILYIAMLLQFVGGILPAFANNMTFILIMRGIFGAGYGLLFPLSTPILADMFQGDEFKSLMGYKAAIGALAGVVFQMLGGVLAAISWRYAFLGFLLMIPICLLIIFKVPDIKNKKISEDAQSGKLTSKTYILSFLNALLNILQFTFMTNVAMVMTAGKIGSAPEAGFVLTVFTGGAFAAGMIYGKIFNIFKKFTIAIAVGFIGASFLILLNVNTYPMYIFAGIIFGIGFGTYNPDFGVKLVASADKSASARAFSIYVALMGLGQFVSPIVLAFITNKFGLKGPKAAWFVAAPCILTASVVMFLIIAFTKPKNVAASISK
>CP020953.1|AWI05718.1|3350622_3352620_-|2-enoate-reductase
MTYKYQKLFESLKIGSIEIKNRFAMAPMGPQGLGDAEGAFNQRGVDYYVARARGGTGLIITGVTFVENEVEHHEMPGVPCSTYNPVHFVRTASEMTERIHAYDSKVFLQMSAGFGRVAPPANENVPPIAPSPIPNRWVDVTCREISKDEIHHIVKMFGEGAVNAKRAGFDGVQIHAVHEGYLLDQFAISFFNHRTDEYGGCLENRLRFAREVVEEIKKRCGDDYPVILRYSPKSFIKNWRQGALPGEEFEEKGKDIPEGIEAGKLLVQYGYDALDVDVGCYDAWWWNHPPMYQKKGLYIPYAKIMKEAVDVPIICAGRMDNPDLALSALEDGACDMIGLGRPLLADPDYVNKLRLDKTALIRPCLSCHEGCLGRMVKSGSLNCAVNPEACREGVNFIIPVLKPKKVLIVGGGVAGCEAARVLKLRGHEPVIYEKTGRLGGNLIPGGVPDFKEDDRALIKWYENTLKDLNVDIKLNTEVTPEIVKNSKVDVVIIATGSKPKVFNLGDNSKVFTAADVLCGKKQAGDKVVVLGGGLVGCETALYLKKMGKEVTIVEAMDSLLALNGPSCFANFGMLMALISYNHINVVTSSKIVKTTDKGVIVNTQGSCEREIEADSVVLAVGYNSNKELYDSLKFEVQDIRLLGDARKVSNIMYAIWDAYEVASRL
>CP020953.1|AWI05717.1|3349698_3350478_+|cupin
MYNPYETYPYPYFFNPQRYMRNAYRTYQCPCMMNMPMYAQNFPNEMDDDRYIPFTNNMHNNINSNMNNNPNNNIKSNMNNNIMNNNLKPNNTKPNNPKPINTNPPMKSNLKPDSFKGSKDNNSPKSKDYGPEPFAINIEEATKENKYYRSTLWTGKHYQLTLMSIDPGDDIGLEVHPDVDQFLRIEEGQGIVKMGNSKKHLDFQMRVRDGFAIFVPAGTWHNLINTGKGPLKLYSIYAPPQHPHGTLHKTKADAQAAGD
>CP020953.1|AWI05716.1|3349124_3349376_-|hypothetical-protein
MISISVCVGSACHLKGSHKVIKNLQKLISQYKLEASVELKGAFCLGHCTEGVSVKIDEEEKIYSVNEKNVEQFFNEEVVRRIK
>CP020953.1|AWI05715.1|3347403_3349125_-|hydrogenase
MKYMNFSSANCKNCYKCLRSCPVKAIKFKNQQAEIVEDRCIACSHCLAICPQKARHIVSDLERVKEAINSGKKVIATIAPSFVGFFDIDPGRFVSLLRKLGFSYIEETASGADVVSELYRQYMKEEKLDNYISTACPSANYIVEKYFPNLIKYMIPTVSPMIAHGKVLRKIYGEDSFIVFIGPCMGKKIESEGFTNKEVLDAVITFEEFTSWVENSNIDIQNLEPCEFDRNSFKDGRKYPLFTGIVSCVSDVIKEKKLEVISISGTEECMELFKSIEKGEVTNAFIEASACKGSCIGGPGMINNEKGYYKRVQKVKNYINRNNSIGERKLDLDMDIEFSRSFIDKSIEKKLASEKEIEKIMMEMGKYSVEDELNCGVCGYNTCREKAEAIFEGMAESNMCLHYMRNRAESIRNVIFENIVNCIIFLDGEMRIKDINPAAEKAFTVKAENIINKPIALIMDDQDFRNVKETGKDILGKKVSFPNYNLDFIETVRYLEKQDIVMIALVNITEEEKNKRKLVKLKENTINTAQEVIEKQMRVAQEIASLLGETTAETKIALTKLKKVVEEEKGCDS
>CP020953.1|AWI05724.1|3362752_3363016_-|hypothetical-protein
MSIDEIRRLHYKQEGKEEGREEGIAEAIEQSRLKNVEMVIKLLNKKFKNVDGDVIERIKVLSSDSLNLIIEDILDIESIEDLKKVWD
>CP020953.1|AWI05725.1|3364066_3364228_-|hypothetical-protein
MVIKLLNKKFKNVDGDVIEKIKVLNSDILNLIIEDILDIESIEDLKKYGIKSF
>CP020953.1|AWI05726.1|3365112_3366504_+|amino-acid-permease
MEKKELTRGLKARHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYAVAGIAMYIVMRIMGEMLYLEPLTGSFATYANKYISPWAGYMTAWCYWFMWIAVGMSEVTAIGIYMNYWFPALPAWIPALIGVAILAAANMTSVKFYGEFEFWFSLIKIITIVVMLLVGFGLIFFGIGNHGTAIGLTNLTANGGFFAGGLKGWLFALCLVTASYQGVELIGITAGEAQDPKNTLRKATKNIIWRILIFYIGAIFVIVTIYPWNQISALGSPFVLTFAKVGVSAAAGIINFVVLTAAMSGCNSGIYSCGRMLYTLSKNGQAPKFLGKVNKEGVPVNALKTTLACLLCCVILNYLCPNSKLFVYIYSASVLPGMIPWVVLCISQIKFRKEHAAEMETHPFKSRLFPYANYVVVVYLCLVLMGMCFNSDTQIPLLVGAIFCAIVTIAYFAFGINKRTTPEIEEFKSENL
>CP020953.1|AWI05727.1|3366810_3367497_-|hypothetical-protein
MGENIIKIFSKTKVLKLIFIFLLIFIFQFICVDFWVINKANKYIVDKNSVPRVECIIIPGAYVYPDGRLSDILKDRVDTALEIYKGNSNLKILVTGDHGNVQYDEVNNMRKYLEQRGIKSSSIFLDHAGFSTYESIYRAKHIFKVNSAVIVTQDYHLKRSVYSARGMGIECYGVKADKHIYVDIVKYKLRESLAIYKDFIAVNILKTNPKFLGKEIPINTGNFRETRD
>CP020953.1|AWI05728.1|3368260_3368599_-|hypothetical-protein
MENKIKIGDFAKITGCTVKTIIYYHKIGLLQEPKRSSGGYRLYGSVELTSMKLIKYLKSLGFDLKKIKEVLGNAYESKTLKEALKSLRIELLKEGEKIQERVGKIDILLEEN
>CP020953.1|AWI05729.1|3369316_3369901_-|dimethyladenosine-transferase
MNINILLFNNFETLDIFGPVEILGQIEEYQIHYYSESGGIITNAQKLKIVTEPINSADESGILVIPGGMGTRELVNNTCFLDKLKLIAEKSTYCLSICTGSAVLAKCGVLKNKKATSNKQALEWVKLVSDQVNWIEKARWVADGKYYTSSGISAGIDMTLGFVSDRFGKDKAVKIANDIEYIWNDDCTNDIFAR
>CP020953.1|AWI05730.1|3369994_3370759_-|alpha/beta-hydrolase
MSYFNFDNKRVYYTEFGNGTPLLLLHGNTASSNMFVEIAEKYKKNFKVILIDFLGHGKSDRLDKFPADLWFYEAKQTIAFLREKQYSKVNIIGSSGGALVAINVALEASELVNKVIADSFEGEKPLKAFTENIEVDRENSKQNENVKVFYLYMHGSDWEQVVDNDTSAIIRHEKEIGKFFHKDLQSFKSDILLTGSKEDEFIGTISPNYFEKVYGELVSKIGHGKINLFETGGHPAMLTNQDSFYQLSMEFFGQ
>CP020953.1|AWI05731.1|3370981_3371608_-|N-acetyltransferase
MIIINENQIESTARLLVNCFINDPLSIVETKGIENKEIFLEKLFMNQLRIWEKTIDVFSLDDKFNSVIVGYEKKNYKSFRIFLLTLMSNSKMLRDLGTKNVKIYSSNIKNVLKVINLKWQKEFIKGNYYYIKIIAIANENRGKGVFRKLITPTINYCKELNIPIILESTNPDNIPIYQHFGFKLVKTIAIDGIDLRQYCFIKYSNLLD
>CP020953.1|AWI05732.1|3372011_3372830_-|chemotaxis-protein
MEKILESFLETMPVLKDVLQEDLAVIVADTTSILYYRAGDTIDLRIKVGQKLTTDQPIYKTIESGKIYSEIVSKELHGVPFKAVTYPIKDSQGKVIGGVGIGKSLAKQSKVEEVSENIFSSLQQTNASIQEVAANSQNLSLSMNNIINSTKSTEQNIKDTDGILNLIASISSQSNLLALNAAIEAARAGEAGRGFSVVADEMRKLSQMSGQSANKISQILLEMKKSIDEVIKEINNTGMIAESQASATEQISAALEEITSNSEVLANVAKIL
>CP020953.1|AWI05733.1|3373171_3373531_-|mannose-6-phosphate-isomerase
MDKVNVYEKLNLFNDHWSPKILGEFNDSYVKVAKFKGEFIRHTHENEDEMFYILKGVLTIKFSDKDVILNEGEFIIIPKGVEHMPVAKEEVHVMLIEAKTTLNTGDVKNERTVEDLDRI

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Crispr_ID: CP020953_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_4

3363117-3363873

Orphan

III-B

Consensus_repeat	Method
ATTTAAATACATCTTATGTTATAGTTCAAC	PILER-CR
ATTTAAATACATCTTATGTTATAGTTCAAC	CRISPRCasFinder
ATTTAAATACATCTTATGTTATAGTTCAAC	CRT

11 spacers

The CRISPR arrays of CP020953_4

>merge|CP020953|4|3363117-3363873|PILER-CR,CRISPRCasFinder,CRT
ATTTAAATACATCTTATGTTATAGTTCAACAAGTGGAGAAAATAAATTTTCACATTACGCATATTTATTTAAATACATCTTATGTTATAGTTCAACGCAGTACCTTCACCAATTTTCAGGAGGGGAACTTCAAATTTAAATACATCTTATATTATAGTTCAACAAGTAAGTAATACCTTGTCTTATTAATAATATTGCCATTTAAATATATCTTATGTTATAGTTCAACATTTAGGAGAGATACTGAAGAACATCTCTCCTTTTCATTTAAATACATCTTATGTTATAGTTCAACTAGTACTAAAAAGCTAACTAAAGCTATGCATTATTCATTTAAATACATCTTATGTTATAGTTCAACAAATGCAATATATACAGGTAAAAAATCGGCAACTGGATTTAAATACATCTTATGTTATAGTTCAACATTTTGCGAATACATGGGAGAATAATATGGCTCTTTATTTAAATACATCTTATGTTATAGTTCAACGAAATTACCAACACATATGGTAATGTAAAAATATTAATTTAAATACATCTTATGTTATAGTTCAACTTAAAGAGGATATAGAACAAAGGGCATTTTACTTAGTATTTAAATACATCTTATGTTATAGTTCAACTTATATCCGTTTGAATTGGTCCTCTGCTTGGACTCATTTAAATACATCTTATGTTATAGTTCAACAGTAAGTGTTAAATAAATGAAATGTGCAAAGATATAATTTAAATACATCTTATGTTATAGTTCAAC

>CP020953|4|2|3363117-3363873|PILER-CR
ATTTAAATACATCTTATGTTATAGTTCAAC	AAGTGGAGAAAATAAATTTTCACATTACGCATATTT
ATTTAAATACATCTTATGTTATAGTTCAAC	GCAGTACCTTCACCAATTTTCAGGAGGGGAACTTCAA
ATTTAAATACATCTTATATTATAGTTCAAC	AAGTAAGTAATACCTTGTCTTATTAATAATATTGCC
ATTTAAATATATCTTATGTTATAGTTCAAC	ATTTAGGAGAGATACTGAAGAACATCTCTCCTTTTC
ATTTAAATACATCTTATGTTATAGTTCAAC	TAGTACTAAAAAGCTAACTAAAGCTATGCATTATTC
ATTTAAATACATCTTATGTTATAGTTCAAC	AAATGCAATATATACAGGTAAAAAATCGGCAACTGG
ATTTAAATACATCTTATGTTATAGTTCAAC	ATTTTGCGAATACATGGGAGAATAATATGGCTCTTT
ATTTAAATACATCTTATGTTATAGTTCAAC	GAAATTACCAACACATATGGTAATGTAAAAATATTA
ATTTAAATACATCTTATGTTATAGTTCAAC	TTAAAGAGGATATAGAACAAAGGGCATTTTACTTAGT
ATTTAAATACATCTTATGTTATAGTTCAAC	TTATATCCGTTTGAATTGGTCCTCTGCTTGGACTC
ATTTAAATACATCTTATGTTATAGTTCAAC	AGTAAGTGTTAAATAAATGAAATGTGCAAAGATATA
ATTTAAATACATCTTATGTTATAGTTCAAC

>CP020953|4|4|3363117-3363873|CRISPRCasFinder
ATTTAAATACATCTTATGTTATAGTTCAAC	AAGTGGAGAAAATAAATTTTCACATTACGCATATTT
ATTTAAATACATCTTATGTTATAGTTCAAC	GCAGTACCTTCACCAATTTTCAGGAGGGGAACTTCAA
ATTTAAATACATCTTATATTATAGTTCAAC	AAGTAAGTAATACCTTGTCTTATTAATAATATTGCC
ATTTAAATATATCTTATGTTATAGTTCAAC	ATTTAGGAGAGATACTGAAGAACATCTCTCCTTTTC
ATTTAAATACATCTTATGTTATAGTTCAAC	TAGTACTAAAAAGCTAACTAAAGCTATGCATTATTC
ATTTAAATACATCTTATGTTATAGTTCAAC	AAATGCAATATATACAGGTAAAAAATCGGCAACTGG
ATTTAAATACATCTTATGTTATAGTTCAAC	ATTTTGCGAATACATGGGAGAATAATATGGCTCTTT
ATTTAAATACATCTTATGTTATAGTTCAAC	GAAATTACCAACACATATGGTAATGTAAAAATATTA
ATTTAAATACATCTTATGTTATAGTTCAAC	TTAAAGAGGATATAGAACAAAGGGCATTTTACTTAGT
ATTTAAATACATCTTATGTTATAGTTCAAC	TTATATCCGTTTGAATTGGTCCTCTGCTTGGACTC
ATTTAAATACATCTTATGTTATAGTTCAAC	AGTAAGTGTTAAATAAATGAAATGTGCAAAGATATA
ATTTAAATACATCTTATGTTATAGTTCAAC

>CP020953|4|2|3363117-3363873|CRT
ATTTAAATACATCTTATGTTATAGTTCAAC	AAGTGGAGAAAATAAATTTTCACATTACGCATATTT
ATTTAAATACATCTTATGTTATAGTTCAAC	GCAGTACCTTCACCAATTTTCAGGAGGGGAACTTCAA
ATTTAAATACATCTTATATTATAGTTCAAC	AAGTAAGTAATACCTTGTCTTATTAATAATATTGCC
ATTTAAATATATCTTATGTTATAGTTCAAC	ATTTAGGAGAGATACTGAAGAACATCTCTCCTTTTC
ATTTAAATACATCTTATGTTATAGTTCAAC	TAGTACTAAAAAGCTAACTAAAGCTATGCATTATTC
ATTTAAATACATCTTATGTTATAGTTCAAC	AAATGCAATATATACAGGTAAAAAATCGGCAACTGG
ATTTAAATACATCTTATGTTATAGTTCAAC	ATTTTGCGAATACATGGGAGAATAATATGGCTCTTT
ATTTAAATACATCTTATGTTATAGTTCAAC	GAAATTACCAACACATATGGTAATGTAAAAATATTA
ATTTAAATACATCTTATGTTATAGTTCAAC	TTAAAGAGGATATAGAACAAAGGGCATTTTACTTAGT
ATTTAAATACATCTTATGTTATAGTTCAAC	TTATATCCGTTTGAATTGGTCCTCTGCTTGGACTC
ATTTAAATACATCTTATGTTATAGTTCAAC	AGTAAGTGTTAAATAAATGAAATGTGCAAAGATATA
ATTTAAATACATCTTATGTTATAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI05728.1\|3368260_3368599_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133411
CP020953.1\|AWI05726.1\|3365112_3366504_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694
CP020953.1\|AWI05717.1\|3349698_3350478_+\|cupin	unknown	unknown	gnl\|CDD\|380352
CP020953.1\|AWI05721.1\|3355637_3357185_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225306
CP020953.1\|AWI05733.1\|3373171_3373531_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|380355
CP020953.1\|AWI07782.1\|3360340_3361285_+\|primosomal-replication-protein-N	unknown	unknown	gnl\|CDD\|377797
CP020953.1\|AWI05725.1\|3364066_3364228_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753
CP020953.1\|AWI05731.1\|3370981_3371608_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
CP020953.1\|AWI05723.1\|3361217_3361574_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180750
CP020953.1\|AWI05732.1\|3372011_3372830_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
CP020953.1\|AWI05729.1\|3369316_3369901_-\|dimethyladenosine-transferase	unknown	unknown	gnl\|CDD\|153233
CP020953.1\|AWI05719.1\|3352690_3353872_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341026
CP020953.1\|AWI05727.1\|3366810_3367497_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225500
CP020953.1\|AWI05730.1\|3369994_3370759_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP020953.1\|AWI05722.1\|3357381_3359265_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223605
CP020953.1\|AWI05718.1\|3350622_3352620_-\|2-enoate-reductase	unknown	unknown	gnl\|CDD\|239241
CP020953.1\|AWI05734.1\|3373677_3374490_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP020953.1\|AWI05716.1\|3349124_3349376_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239278
CP020953.1\|AWI05720.1\|3354062_3355460_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349922
CP020953.1\|AWI05724.1\|3362752_3363016_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI05728.1\|3368260_3368599_-\|hypothetical-protein	gnl\|CDD\|133411	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	3.8108e-22
CP020953.1\|AWI05726.1\|3365112_3366504_+\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0
CP020953.1\|AWI05717.1\|3349698_3350478_+\|cupin	gnl\|CDD\|380352	cd02223, cupin_Bh2720-like, Bacillus halodurans Bh2720 and related proteins, cupin domain. This family includes bacterial, archaeal, and eukaryotic proteins similar to Bh2720, a Bacillus halodurans protein of unknown function with a cupin beta-barrel fold.	2.35464e-60
CP020953.1\|AWI05721.1\|3355637_3357185_+\|hypothetical-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	3.02058e-15
CP020953.1\|AWI05733.1\|3373171_3373531_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|380355	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain. This family includes bacterial proteins homologous to YdbB, a Bacillus subtilis protein of unknown function. It also includes protein Nmb1881 From Neisseria meningitidis, also of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.52579e-50
CP020953.1\|AWI07782.1\|3360340_3361285_+\|primosomal-replication-protein-N	gnl\|CDD\|377797	pfam07261, DnaB_2, Replication initiation and membrane attachment. This family consists of several bacterial replication initiation and membrane attachment (DnaB) proteins, as well as DnaD which is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication. DnaD has been merged into this family. This family also includes Ftn6, a cyanobacterial-specific divisome component possibly playing a role at the interface between DNA replication and cell division. Ftn6 possesses a conserved domain localized within the N-terminus of the proteins. This domain, named FND, exhibits sequence and structure similarities with the DnaD-like domains pfam04271 now merged into pfam07261.	6.08326e-12
CP020953.1\|AWI05725.1\|3364066_3364228_-\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	5.2209e-07
CP020953.1\|AWI05731.1\|3370981_3371608_-\|N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	0.000272662
CP020953.1\|AWI05723.1\|3361217_3361574_+\|hypothetical-protein	gnl\|CDD\|180750	PRK06921, PRK06921, hypothetical protein; Provisional.	0.000201142
CP020953.1\|AWI05732.1\|3372011_3372830_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	1.4554e-29
CP020953.1\|AWI05729.1\|3369316_3369901_-\|dimethyladenosine-transferase	gnl\|CDD\|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	2.88238e-62
CP020953.1\|AWI05719.1\|3352690_3353872_-\|MFS-transporter	gnl\|CDD\|341026	cd17473, MFS_arabinose_efflux_permease_like, Putative arabinose efflux permease family transporters of the Major Facilitator Superfamily. This family includes a group of putative arabinose efflux permease family transporters, such as alpha proteobacterium quinolone resistance protein NorA (characterized Staphylococcus aureus Quinolone resistance protein NorA belongs to a different group), Desulfovibrio dechloracetivorans bacillibactin exporter, Vibrio aerogenes antiseptic resistance protein. The biological function of those transporters remain unclear. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.67809e-60
CP020953.1\|AWI05727.1\|3366810_3367497_-\|hypothetical-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.61223e-47
CP020953.1\|AWI05730.1\|3369994_3370759_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.85162e-17
CP020953.1\|AWI05722.1\|3357381_3359265_-\|amino-acid-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	1.97224e-26
CP020953.1\|AWI05718.1\|3350622_3352620_-\|2-enoate-reductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
CP020953.1\|AWI05734.1\|3373677_3374490_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.73522e-35
CP020953.1\|AWI05716.1\|3349124_3349376_-\|hypothetical-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	6.25368e-10
CP020953.1\|AWI05720.1\|3354062_3355460_-\|amidohydrolase	gnl\|CDD\|349922	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily. Peptidase M20 family, ACY1L2 aminobenzoyl-glutamate utilization protein B (AbgB) subfamily. This group contains mostly bacterial amidohydrolases, including gene products of abgB that catalyze the cleavage of p-aminobenzoyl-glutamate, a folate catabolite in Escherichia coli, to p-aminobenzoate and glutamate. p-Aminobenzoyl-glutamate is a natural end product of folate catabolism, and its utilization is initiated by the abg region gene product, AbgT, by enabling uptake of its into the cell in a concentration-dependent, saturable manner. It is subsequently cleaved by AbgA and AbgB (sometimes referred to as AbgAB).	0
CP020953.1\|AWI05724.1\|3362752_3363016_-\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	6.83015e-07

>CP020953.1|AWI05724.1|3362752_3363016_-|hypothetical-protein
MSIDEIRRLHYKQEGKEEGREEGIAEAIEQSRLKNVEMVIKLLNKKFKNVDGDVIERIKVLSSDSLNLIIEDILDIESIEDLKKVWD
>CP020953.1|AWI05723.1|3361217_3361574_+|hypothetical-protein
MENMKEKKKKQSGIKGTWKDSSEFDALENCPICGGKGYIIRHSPNSQDTIAFCKCREMDNLKRIWSFSGIETRRNKLIFGNYKVYNEATKKCIGSRILEMYKNFIVAISGKENNYRLK
>CP020953.1|AWI07782.1|3360340_3361285_+|primosomal-replication-protein-N
MFGVTESIILQQIHYWLLKSNHIIDGTPWIYNSYEAWHNQISFLCKRTIIRAIKKLETSGVVLSSNFNKSKMDKTKWYTIDYEKLESLCDAFEDSTNSTIDTEGKPSKNSSDISEDDVNKSSNTCLSPSSIESKSPVDNAYFNKTIPEITTENYLKKEEEELTDVVSFYSDNISCASPYEINLLKNFMEDFNSKDLIILGMKQALKSNAKNLRYIEKVLYSWKNKGLRNEKEVINYLNNYKKHKSYYGFHNFKTKSDFFDDYKNLQGGESFGRTWGNYEKSWGYNSEIEETQFGKYEREEEKTEWYQGDMEGLI
>CP020953.1|AWI05722.1|3357381_3359265_-|amino-acid-permease
MLKKFLDVLFGEPLANEQGKHEKYNIPFGLAIMASDAISSVAYGAQEILFVLIVLGASAYQWLTWTSFMIIGLLIILTIAYIQIIKAYPQGGGAYKVAKENIGDKAGLSAGAGLIISYILTVAVSASAGADAIISAFVGLAEYKVIFVVAIIVVLTILNLRGISESSKIFAIPTYIFIFSMIFMIVYGLFKYFVLNIHPQPMFSVPAGTTENLSIFLILRAFSSGCSALTGVEAVSNSVPNFQEPSQKSAKTVMILLAALIFFIFGGTSVLAIFYTAVPIANGPTVVSQIAFGVFHNGIMYYVIQFSTAVILLMACNTAYTGFPMLMYIVGKDGFAPRQFTIRGKRLSFSFGICALSFIACVLVTIFKADTHRLIPLYAIGVFISFTLGQFGMVNHWRKERGKGWIKRAIINGCGAAVTLFTTIIILVEKFSEGAFIVAILIPMIILVQMRIKHHYNKVANGLSISQINLKKLNLRIKYTHTVIVPIASLNKAVIGALKYAQSISDNVIALNISTDMEAMERLKQRWSELDTDITLISKYSPYRAVITPLLQNIVSIADKAGEDEKVTVIVPQFITHGHFGKVLHNHTSFFIRETLLKNNNIIVSTFPYHLSDEEIAAANKKNKKIK
>CP020953.1|AWI05721.1|3355637_3357185_+|hypothetical-protein
MLVLMSEIVNKLLKYNPVFRIKHDLYVKRCKFLDCNDFSLNSDTIYLGSISNLSSDISLNSPANLLFLSDVDIPNYLKNNTMINYILINENIGSSKIFNELQDLFSFHEMEAVCSEKLFKALCKGNNIKQLLDTCMEILGNPLLLTDSYLHLMDYSGFSDNIDEPLWKECIIAGHIPLKYINQRNFNLTIKNTIDSDIMWEIGSLKHKQILARIRLNGTVIAYLKILQYNKEITQSDITIIPEICSVLALSIEKSKYSFFIPKSPIETLIIALLKGRIISEISIEEIKNQLKYPYYYVVSFYIRSHVPDLTTKLYHMKGVISSFFYHYHTVIYADHIITLIDKKTSSAPVIDTTIYNSFIQLLSDNKLTAGISRCFQSLIKISKFHMQSVKAAELGYKLDKEDSPYFYNDYAVYHLFDTCSSKEKLEEFCDPLILQLINRDKENGTSYTLSLYNYIKNNFDMQKTSNFMNVHYNTMKYRLKKIQDILQIDLNNSNTVFHINMSFRILELLGYLKL
>CP020953.1|AWI05720.1|3354062_3355460_-|amidohydrolase
MEEYHRISEIIESKRQLLINISDEIWRYAELKFQEFKSAELLCKTLEKEEFSVQRGAAGIKTAFVASYGKGKPVIAILGEYDALDGLSQEGGVTEEKSIIPGGSGHGCGHNLLGTGALGAAIALRYCIRENNLPGTIRYYGCPAEEGGCGKVFMTREGLFNDVDCALSWHPDTGNYVGTNSCLALYNVYFKFKGKSSHAAMVPHLGRSALDAVELMNVGVNYLREHIIPEARIHYAITNAGGSAPNIVQAEAEDYFSIRAPKISQARGIYERACDVAKGAALMTGTKVEISIDSALSNFVPNKTLEMLIYKSFSKLGTPEYSENDRQLAKKFRTSLSEDNKKSDIHVLTVKELRDKDISEIVNPFNDNEKTLPVSTDVGDVSWIVPTGMFNTACAGFGTPIHSWIFVAQGNTSIAHKGMLQAGKVIALTAVELFKNPEIIQNAKRELKERLGGETYSCPIPKKNQ
>CP020953.1|AWI05719.1|3352690_3353872_-|MFS-transporter
MAEKKYGFVEKAAVLSIALLMYTTSVTTPALGEIAKAFPGVSQEVVKQIAALPSLMMVIFSLVAGQLERFISKKKILYIAMLLQFVGGILPAFANNMTFILIMRGIFGAGYGLLFPLSTPILADMFQGDEFKSLMGYKAAIGALAGVVFQMLGGVLAAISWRYAFLGFLLMIPICLLIIFKVPDIKNKKISEDAQSGKLTSKTYILSFLNALLNILQFTFMTNVAMVMTAGKIGSAPEAGFVLTVFTGGAFAAGMIYGKIFNIFKKFTIAIAVGFIGASFLILLNVNTYPMYIFAGIIFGIGFGTYNPDFGVKLVASADKSASARAFSIYVALMGLGQFVSPIVLAFITNKFGLKGPKAAWFVAAPCILTASVVMFLIIAFTKPKNVAASISK
>CP020953.1|AWI05718.1|3350622_3352620_-|2-enoate-reductase
MTYKYQKLFESLKIGSIEIKNRFAMAPMGPQGLGDAEGAFNQRGVDYYVARARGGTGLIITGVTFVENEVEHHEMPGVPCSTYNPVHFVRTASEMTERIHAYDSKVFLQMSAGFGRVAPPANENVPPIAPSPIPNRWVDVTCREISKDEIHHIVKMFGEGAVNAKRAGFDGVQIHAVHEGYLLDQFAISFFNHRTDEYGGCLENRLRFAREVVEEIKKRCGDDYPVILRYSPKSFIKNWRQGALPGEEFEEKGKDIPEGIEAGKLLVQYGYDALDVDVGCYDAWWWNHPPMYQKKGLYIPYAKIMKEAVDVPIICAGRMDNPDLALSALEDGACDMIGLGRPLLADPDYVNKLRLDKTALIRPCLSCHEGCLGRMVKSGSLNCAVNPEACREGVNFIIPVLKPKKVLIVGGGVAGCEAARVLKLRGHEPVIYEKTGRLGGNLIPGGVPDFKEDDRALIKWYENTLKDLNVDIKLNTEVTPEIVKNSKVDVVIIATGSKPKVFNLGDNSKVFTAADVLCGKKQAGDKVVVLGGGLVGCETALYLKKMGKEVTIVEAMDSLLALNGPSCFANFGMLMALISYNHINVVTSSKIVKTTDKGVIVNTQGSCEREIEADSVVLAVGYNSNKELYDSLKFEVQDIRLLGDARKVSNIMYAIWDAYEVASRL
>CP020953.1|AWI05717.1|3349698_3350478_+|cupin
MYNPYETYPYPYFFNPQRYMRNAYRTYQCPCMMNMPMYAQNFPNEMDDDRYIPFTNNMHNNINSNMNNNPNNNIKSNMNNNIMNNNLKPNNTKPNNPKPINTNPPMKSNLKPDSFKGSKDNNSPKSKDYGPEPFAINIEEATKENKYYRSTLWTGKHYQLTLMSIDPGDDIGLEVHPDVDQFLRIEEGQGIVKMGNSKKHLDFQMRVRDGFAIFVPAGTWHNLINTGKGPLKLYSIYAPPQHPHGTLHKTKADAQAAGD
>CP020953.1|AWI05716.1|3349124_3349376_-|hypothetical-protein
MISISVCVGSACHLKGSHKVIKNLQKLISQYKLEASVELKGAFCLGHCTEGVSVKIDEEEKIYSVNEKNVEQFFNEEVVRRIK
>CP020953.1|AWI05725.1|3364066_3364228_-|hypothetical-protein
MVIKLLNKKFKNVDGDVIEKIKVLNSDILNLIIEDILDIESIEDLKKYGIKSF
>CP020953.1|AWI05726.1|3365112_3366504_+|amino-acid-permease
MEKKELTRGLKARHIELIALGGTIGVGLFMGSASTIKWAGPSVLLAYAVAGIAMYIVMRIMGEMLYLEPLTGSFATYANKYISPWAGYMTAWCYWFMWIAVGMSEVTAIGIYMNYWFPALPAWIPALIGVAILAAANMTSVKFYGEFEFWFSLIKIITIVVMLLVGFGLIFFGIGNHGTAIGLTNLTANGGFFAGGLKGWLFALCLVTASYQGVELIGITAGEAQDPKNTLRKATKNIIWRILIFYIGAIFVIVTIYPWNQISALGSPFVLTFAKVGVSAAAGIINFVVLTAAMSGCNSGIYSCGRMLYTLSKNGQAPKFLGKVNKEGVPVNALKTTLACLLCCVILNYLCPNSKLFVYIYSASVLPGMIPWVVLCISQIKFRKEHAAEMETHPFKSRLFPYANYVVVVYLCLVLMGMCFNSDTQIPLLVGAIFCAIVTIAYFAFGINKRTTPEIEEFKSENL
>CP020953.1|AWI05727.1|3366810_3367497_-|hypothetical-protein
MGENIIKIFSKTKVLKLIFIFLLIFIFQFICVDFWVINKANKYIVDKNSVPRVECIIIPGAYVYPDGRLSDILKDRVDTALEIYKGNSNLKILVTGDHGNVQYDEVNNMRKYLEQRGIKSSSIFLDHAGFSTYESIYRAKHIFKVNSAVIVTQDYHLKRSVYSARGMGIECYGVKADKHIYVDIVKYKLRESLAIYKDFIAVNILKTNPKFLGKEIPINTGNFRETRD
>CP020953.1|AWI05728.1|3368260_3368599_-|hypothetical-protein
MENKIKIGDFAKITGCTVKTIIYYHKIGLLQEPKRSSGGYRLYGSVELTSMKLIKYLKSLGFDLKKIKEVLGNAYESKTLKEALKSLRIELLKEGEKIQERVGKIDILLEEN
>CP020953.1|AWI05729.1|3369316_3369901_-|dimethyladenosine-transferase
MNINILLFNNFETLDIFGPVEILGQIEEYQIHYYSESGGIITNAQKLKIVTEPINSADESGILVIPGGMGTRELVNNTCFLDKLKLIAEKSTYCLSICTGSAVLAKCGVLKNKKATSNKQALEWVKLVSDQVNWIEKARWVADGKYYTSSGISAGIDMTLGFVSDRFGKDKAVKIANDIEYIWNDDCTNDIFAR
>CP020953.1|AWI05730.1|3369994_3370759_-|alpha/beta-hydrolase
MSYFNFDNKRVYYTEFGNGTPLLLLHGNTASSNMFVEIAEKYKKNFKVILIDFLGHGKSDRLDKFPADLWFYEAKQTIAFLREKQYSKVNIIGSSGGALVAINVALEASELVNKVIADSFEGEKPLKAFTENIEVDRENSKQNENVKVFYLYMHGSDWEQVVDNDTSAIIRHEKEIGKFFHKDLQSFKSDILLTGSKEDEFIGTISPNYFEKVYGELVSKIGHGKINLFETGGHPAMLTNQDSFYQLSMEFFGQ
>CP020953.1|AWI05731.1|3370981_3371608_-|N-acetyltransferase
MIIINENQIESTARLLVNCFINDPLSIVETKGIENKEIFLEKLFMNQLRIWEKTIDVFSLDDKFNSVIVGYEKKNYKSFRIFLLTLMSNSKMLRDLGTKNVKIYSSNIKNVLKVINLKWQKEFIKGNYYYIKIIAIANENRGKGVFRKLITPTINYCKELNIPIILESTNPDNIPIYQHFGFKLVKTIAIDGIDLRQYCFIKYSNLLD
>CP020953.1|AWI05732.1|3372011_3372830_-|chemotaxis-protein
MEKILESFLETMPVLKDVLQEDLAVIVADTTSILYYRAGDTIDLRIKVGQKLTTDQPIYKTIESGKIYSEIVSKELHGVPFKAVTYPIKDSQGKVIGGVGIGKSLAKQSKVEEVSENIFSSLQQTNASIQEVAANSQNLSLSMNNIINSTKSTEQNIKDTDGILNLIASISSQSNLLALNAAIEAARAGEAGRGFSVVADEMRKLSQMSGQSANKISQILLEMKKSIDEVIKEINNTGMIAESQASATEQISAALEEITSNSEVLANVAKIL
>CP020953.1|AWI05733.1|3373171_3373531_-|mannose-6-phosphate-isomerase
MDKVNVYEKLNLFNDHWSPKILGEFNDSYVKVAKFKGEFIRHTHENEDEMFYILKGVLTIKFSDKDVILNEGEFIIIPKGVEHMPVAKEEVHVMLIEAKTTLNTGDVKNERTVEDLDRI
>CP020953.1|AWI05734.1|3373677_3374490_-|alpha/beta-hydrolase
MGYYIKAEPNVKIYVEDLNPDGKKTILFLHGWPGSHKLFEYQFDQLPKMGYRCIGIDQRGFGESDKPYKGYDYDRLSDDVRAVVNVLKLNDFTLAGHSTGGAIAIRYMSRHRGYGVSKLALFAAAAPSLIKRRNFPYGLEKEDVIKMINETYNDRPKMLSNFGDIFFFQYITKPFSDWFFQLGLQAAGWATAAVENTWINEVLFSDLAAINVPTLIIHGIHDKVVPFSLAKVQKQSIKNSKLIPFEFSGHGAFYDQRDKFNEELMKFIEK

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Crispr_ID: CP020953_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_5

3399051-3399343

TypeIII

III-B

Consensus_repeat	Method
ATTTAAATACATCCTATGTTAAAGTTCAAC	CRISPRCasFinder
ATTTAAATACATCCTATGTTAAAGTTCAAC	CRT
ATTTAAATACATCCTATGTTAAAGTTCAAC	PILER-CR

4 spacers

cas6,csx1

The CRISPR arrays of CP020953_5

>merge|CP020953|5|3399051-3399343|CRISPRCasFinder,CRT,PILER-CR
TTTTTAATATGCCATATGTTAAAGTTCAATAGTATTAACAATAATAGCTTTCCAAGCTAAAGCTAAATTTAAATACATCCTATGTTAAAGTTCAACTCTCTAATTTGTGCTTTAAGCCTTTCAATTTCGGTTCATTTAAATACATCCTATGTTAAAGTTCAACTTTCTGCAAGACTTACACAATAACTGAAGTAATAGAATTTAAATACATCCTATGTTAAAGTTCAACATAAATGGATTCCAGAGTTCAATAAAATAATAGTATTTAAATACATCCTATGTTAAAGTTCAAC

>CP020953|5|5|3399051-3399343|CRISPRCasFinder
TTTTTAATATGCCATATGTTAAAGTTCAAT	AGTATTAACAATAATAGCTTTCCAAGCTAAAGCTAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	TCTCTAATTTGTGCTTTAAGCCTTTCAATTTCGGTTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	TTTCTGCAAGACTTACACAATAACTGAAGTAATAGA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATAAATGGATTCCAGAGTTCAATAAAATAATAGT
ATTTAAATACATCCTATGTTAAAGTTCAAC

>CP020953|5|3|3399051-3399343|CRT
TTTTTAATATGCCATATGTTAAAGTTCAAT	AGTATTAACAATAATAGCTTTCCAAGCTAAAGCTAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	TCTCTAATTTGTGCTTTAAGCCTTTCAATTTCGGTTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	TTTCTGCAAGACTTACACAATAACTGAAGTAATAGA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATAAATGGATTCCAGAGTTCAATAAAATAATAGT
ATTTAAATACATCCTATGTTAAAGTTCAAC

>CP020953|5|3|3399117-3399343|PILER-CR
ATTTAAATACATCCTATGTTAAAGTTCAAC	TCTCTAATTTGTGCTTTAAGCCTTTCAATTTCGGTTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	TTTCTGCAAGACTTACACAATAACTGAAGTAATAGA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATAAATGGATTCCAGAGTTCAATAAAATAATAGT
ATTTAAATACATCCTATGTTAAAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP020953.1\|AWI05752.1\|3389756_3390023_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|337191
CP020953.1\|AWI05753.1\|3390294_3390660_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05760.1\|3395370_3397044_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05770.1\|3411359_3412052_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05755.1\|3391665_3392184_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP020953.1\|AWI05759.1\|3394529_3395237_-\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP020953.1\|AWI05762.1\|3399630_3401313_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05754.1\|3390925_3391663_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100081
CP020953.1\|AWI05768.1\|3409611_3410055_+\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05761.1\|3397274_3398951_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878
CP020953.1\|AWI05764.1\|3401985_3402399_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378906
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP020953.1\|AWI05766.1\|3407886_3408441_-\|flavodoxin	unknown	unknown	gnl\|CDD\|223728
CP020953.1\|AWI05758.1\|3393506_3394259_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|128898
CP020953.1\|AWI05757.1\|3392676_3393261_-\|transferase	unknown	unknown	gnl\|CDD\|100047
CP020953.1\|AWI05765.1\|3403890_3406290_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
CP020953.1\|AWI05763.1\|3401462_3401912_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05756.1\|3392232_3392655_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319924

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI05758.1\|3393506_3394259_-\|SAM-dependent-methyltransferase	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	1.19618e-17
CP020953.1\|AWI05752.1\|3389756_3390023_-\|hypothetical-protein	gnl\|CDD\|337191	pfam08765, Mor, Mor transcription activator family. Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.	0.00250974
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.73146e-11
CP020953.1\|AWI05760.1\|3395370_3397044_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	5.61129e-75
CP020953.1\|AWI05755.1\|3391665_3392184_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.75606e-09
CP020953.1\|AWI05759.1\|3394529_3395237_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.68724e-07
CP020953.1\|AWI05762.1\|3399630_3401313_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	3.78e-73
CP020953.1\|AWI05754.1\|3390925_3391663_+\|site-2-protease-family-protein	gnl\|CDD\|100081	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.	1.23794e-24
CP020953.1\|AWI05761.1\|3397274_3398951_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	7.22243e-72
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	7.08496e-09
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.88309e-34
CP020953.1\|AWI05766.1\|3407886_3408441_-\|flavodoxin	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.4025e-30
CP020953.1\|AWI05764.1\|3401985_3402399_-\|hypothetical-protein	gnl\|CDD\|378906	pfam12663, DUF3788, Protein of unknown function (DUF3788). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length. This family may be distantly related to RelE proteins.	1.42119e-43
CP020953.1\|AWI05757.1\|3392676_3393261_-\|transferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	9.04484e-90
CP020953.1\|AWI05765.1\|3403890_3406290_-\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
CP020953.1\|AWI05756.1\|3392232_3392655_-\|hypothetical-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.18715e-45

>CP020953.1|AWI05761.1|3397274_3398951_-|AAA-family-ATPase
MKKIPIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFEKLNIYEHKDIMGKQGIYPVIYITFKDLKDKNIDKCYEKIKEILIEQYDKFQFILDTLSEVDKMYYNDILLGKASEAQYETSLKNLSKFLSRYYGVNVVILIDEYDVPIQSGYLNDYYEDIVEFMRNFLSGGVKDNEYLEKAVMTGILRVAKESIFSGLNNLSVYGILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENIIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKEINEDVEMKEIDKSTENVWSFLLLSGYLKTVKKIRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTINYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>CP020953.1|AWI05760.1|3395370_3397044_-|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELYIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLESNIMDYEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKYYNKKAVIIIDEYDVPIQGGYTGDYYEDIISFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLNVYSILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENVIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGHQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWFRESINNDEFNFMLNSLINGDIKTFGKILKKFVLSSVSYFDISGQESEKVYHAFVLGMLIALSEDYEVKSNRESGYGRYDVMIIQKDKNKIGIIMEFKKVDRDDEEDLKKAAEEGLKQIRKRKYKQELIAREIKNIIEIGVAFEGKDVMVLT
>CP020953.1|AWI05759.1|3394529_3395237_-|hypothetical-protein
MRIFECNFKVFLIKNILKEDVQEAISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYGEGEIYNFQIRCVGEELKNHFVKFLTNEYTTHIKALTCQSKSIFKKPIDRVYSITPAVIKISDLEKTEYWRNNHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERVDNRTPIATNFKGRRMLGDKITLTVDTGIEAQNIAYMLLGTGIGDMSPRGYGYMNYQYIK
>CP020953.1|AWI05758.1|3393506_3394259_-|SAM-dependent-methyltransferase
MDFRKVFDSIPKEFDEWRTRYCDELFADVIEYSKLGCSKTVLEIGPGTGQATEPILKTGCSYLAIELGENLAEYTKKKFSSYDNFQIVNDDFETYDFGYNQFDLVYSAATIQWIPEKIGFKKVYDILKNNGTFAMMLTRTDEKSANEALYLKIQKVYAEYFRPETEYTCHLNYNNIKKYGFTNIEYFEYHKTRVLNSDEYVLWISTHATHITLKEPYKSKFYAGIKEAILSFGNNIKLYDTIVLYLAIKA
>CP020953.1|AWI05757.1|3392676_3393261_-|transferase
MDFTEIMKHNKGYFSKHTDAQPKLQRKAKELCWRYNQTGPSEEEKRSSILKELLGTYHPLTFIEPSFRCDYGFNIHTHGLTVINYNCVILDTSPVYIGANAFIAPGVCLACSGHAILPKQRAEGIGTSKPITIEDDVWIGANAVVCGGVTIGKGSIIGAGSVVNKDIPAGVIAVGNPCKVLREITEEDLISLSN
>CP020953.1|AWI05756.1|3392232_3392655_-|hypothetical-protein
MIQSVVHIALVVKDYDEAIEFYTKKLHFTLVEDTYQPEQEKRWVVVSPPGSNGTTILLARASKPEQKPFIGNQAGGRVFLFLGTDDFWRDYNEMIEIGIEFVREPKEQDYGIVAVFKDLYGNLWDLVQFNENHPMFKRVK
>CP020953.1|AWI05755.1|3391665_3392184_-|N-acetyltransferase
MIRVAATYDILEIENIYNEILDYEEKTVSYTNWQKGLYPTVDYARSAIGNSTMFVGENEKGIYGCVVLNSIQPKEYGNISWGIKAKPSEIMVIHTLCIRPSESRKGKGKIMMDFIEKYAKEKGYKAIRLDTYEGNIPAGTLYPKLGYHYVGTTKFHFQNVIWENLKCFEKSL
>CP020953.1|AWI05754.1|3390925_3391663_+|site-2-protease-family-protein
MMENKNLIKKLNIKKILLNILMVSLIVLLLGFVINFKYSVGYLFVLIIHESGHYIMAKFLKLDVAFGGFTPFGAYVIHEDTKNCKENALIAMAGPLFGGILGLIYYIVYYVTGDYTFLALTFTSIILNLANLIPVSPLDGGQIVEAISPILCYMGFPFLIYLFISVNRLKSKLLLIFIMLAGIYQTYNFTVKHKTDSYYKLDKNSKIKFIIMYSILILFLAISAIYLYNVFDYKYIFKSISRFKA
>CP020953.1|AWI05753.1|3390294_3390660_-|hypothetical-protein
MIVDDLLEKLNELMFKNIDFDEILDLRDSSIFDREWNRVYKVVEEEKKIKGYSEENKQLSDEYRKNAYFRVYNLCENDSLAAYISDDFGMICDSELVGYTDSWLEALIKTYAASKIPCGDI
>CP020953.1|AWI05752.1|3389756_3390023_-|hypothetical-protein
MKYINAVEVLPKSLIDEIQRYVSGKIVYIPQPEGIKNNWGSKTGAKEKIENRNRKIRFEKENGKTIDELMIKYHLSYDTIKKIVYVKK
>CP020953.1|AWI05762.1|3399630_3401313_-|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLIPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELYIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLKSNIMDDEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKHYNEKTVIIIDEYDVPIQGGYTGNYYEDIINFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLNVYSILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENVIYNPWCILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGHQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKNTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTMNYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>CP020953.1|AWI05763.1|3401462_3401912_-|hypothetical-protein
MKTLSIDANDEEIKDLVIEWNELLAAEKYEEALSMFPSHKLEVEWTPELLEQAVYGYGVVGYTREEIKEMFGPEDYKVTSIFDNKEKNKIINSIEVSRDWNFKDENIIGMVHYDCVPLNGELSDLTARFHIRKIYDNNVTLEFLDLHVM
>CP020953.1|AWI05764.1|3401985_3402399_-|hypothetical-protein
MLDKIPTSEDLITLIGKSLFEVWTALCDMIEEKYDMEHLWNNGGKAWKYEYKYRRGGKTLCALYVKENCFGLMIIFGKNERAKFEEDKQNYSIEVQKVYDESKTYHDGKWMMFELVDKSLFGDMEKMLFIKRKSNKK
>CP020953.1|AWI05765.1|3403890_3406290_-|valine--tRNA-ligase
MLDKKYDPIKNEKKWQKFWQENRIYKYDFVSDKKTFSIDTPPPTISGSLHIGHIFSYTQAEIIARFHRMQGENVFYPFGFDDNGLPTERLIEKEENIRANSIPRSEFTEKCMVTTKKYEEDFKNLWMSMGFSVDWSLQYKTIGSTARKISQKAFLDMAKLRKAYIKESPVLWCTTCRTSIAQAELESADKETTFNYVTFICEDSELIIATTRPELLYSCVCLFINPEDERYLKYLGKRALVPLYNYEIPIFSDEKVSMDKGTGIVMCATFGDTTDVEWYKKYKLPYRKTIEENGKISEGVPFIGGLGTLNAREKIIQLLKDNNILVKSETITHSVSIHERCGKAIEIIPSKQWYIDILSEKERYLKAADEINWYPASMKNKYITWVENLKWDWCISRQRYFGVPFPIWYCKKCGKPIFAKDEELPINPIETNPSDPCSCGSTDFIPETAVFDTWATSSLTPLINSKWNTDKDMTEELLPMGMRTQAHEIIRTWTFYTIVRSLFHTGKIPWKDIMLCGFVLAKKGEKISKSKNNAPSSPKELIKRHSADALRYWASSAKLGTDTMFSEEELKTSKRFLNKLWNASAFCIMQLEDYDEVKPIKLLPIDKWILEKIKILEKNSIENLNQYETGLAKHDIDEFFWNDFCDNYLEIIKDRLYKPEIHGKDERLSGQYTLYNALLEILKLYSIYVPHITEEVYQSFYRNFENCISIHKMQWSMKFDNNDENILQFGENVKKIIGEVRRYKSERNLSLKEKINILKISIPKSYEEYITQTLKDIKACTWAEDIEVKFSDKYDVEIL
>CP020953.1|AWI05766.1|3407886_3408441_-|flavodoxin
MSKVVIFKGSPRKNGYTSRLLEQVAKGAKSKGAEVIEFDLNDPGIRGCQGCYYCRTHDGCAVNDYLQPMYKAIDEADAIVFGSPIYYYQITGQARVWLDRTFPMVGENFAPRHSGKKAITIFAQGNPNPQIAEEGIKFVTNIFETYGWKIEDSIHYCGTSSNPDLEKFEELSLRAFKDGENLVG
>CP020953.1|AWI05767.1|3408561_3408882_+|transcriptional-regulator
MEDCYVKYAMDVIGGKWKLLIIWTMYQNGVIRFNELQRKVEGISSLMLSKNLKELEKDCLIVRHQYNEIPPRVEYELSGLSEKLIVVLESLSNWGYEVYKYKNNSI
>CP020953.1|AWI05768.1|3409611_3410055_+|hypothetical-protein
MENMVTVSKSAVGISILFILYLVTFTINLPLIIDSKLSYFNFFATVFYLLAWTGYGIYLYKKKELAFFLYALAYWILVMVASITSNILFIIIFFTPLCGLRMFFVWLNYPTNLAFEKEPYAYLFISIIFVTLSVLAIILIKSNKKLN
>CP020953.1|AWI05769.1|3410471_3410942_-|N-acetyltransferase
MDITIIKGNINYIDECEAALVNSELGIRYFDKKGSARDALKEGFDKRQVYVAIDDNNNCKGFIWVILNGAFHSFPYLHIIAVNQESRGKGIGKKLLKFFEYICFKDYSKLFLVVGDFNSAARILYERIGYVQVGTIPDLYREGITENLMMKSREEN
>CP020953.1|AWI05770.1|3411359_3412052_-|hypothetical-protein
MNFYELRIKVKLSQNMDLIEVPYNIGVFINNSMLKTALLKKIHEEKFYKYVYDTFYPMEKDKLYKKDKIYYFRLRSMNIQLLNKMAIAIYNHDYNNIKAIDVDLKVQEVDKINEIYTLKPAIVTIDSKPWLKEKYSVDLLMKRLNDNLEKKLNQIGEECEVVGLGSFINGIEILNKFPMKYRYKSINLLGNKVQIKVNEDKLSQKKALIAVALGLGEKGSSLGAGFCEYK
>CP020953.1|AWI05771.1|3412053_3413523_-|hypothetical-protein
MKNILITNLGNRDLQIHKDNVRAIKELYNDDEKMKDILNKGRLEDDGYMVFSKIFRELTQKILEYYPKGIEYIDFPIIKSIVKKVEGDLENEKLEKIILMVTDQQDIKHNGQDTVYLGEIIERLHRDKKLEIGLNQSKDNIEIASFCTKSNPSDYDEMRKFYQEKLSKEYDSNKIFLNITGGTPAMAFGLLYNASINASCRVIPFYTKQNTNRTVKFNISETLRKDDDKKQICEFITKNDYMTANILLEKYNNKYGVLEGKYETALNMVKAAHARIQFDFESASRYIDKAQDYDSGSRAVCDRFIYFIKELQNKQKIYLLNELKNNAIYEYENGAYTDFLGRVFRSLEDIYRFILIKKNILKINENDNLKLNKAELESAGIIVKGKLNVPQMSTILEKILEKESEEYKLYIHCTKMDKLRQIRNDSVLAHGYKGVSKDKIDREIGNAIEFLGNLIVQYKKVFNIEINDDHFYDKNGEFNSHLIKLIEEI

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Crispr_ID: CP020953_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_6

3403451-3403680

TypeIII

III-B

Consensus_repeat	Method
TATTTAAATACATCATATGTTAAAGTTCAACT	CRT
AAATACATCATATGTTAAAGTTCAACT	CRISPRCasFinder
ATTTAAATACATCATATGTTAAAGTTCAAC	PILER-CR

3 spacers

cas6,csx1,csm5gr7,csm4gr5,csm3gr7

The CRISPR arrays of CP020953_6

>merge|CP020953|6|3403451-3403680|CRT,CRISPRCasFinder,PILER-CR
TTTGCAAATACATCATATGTTAAAGTTCAACTTTTATCAGGTCAGGAAAATTTAGCTATATTTGCTAATTTAAATACATCATATGTTAAAGTTCAACTATAGACTCAGATCCTTCTACAAAACGTGATTTTCTATTTAAATACATCATATGTTAAAGTTCAACTCAACAGATTTGCTCTTAAAAAGTGGTAGTACTAGTATTTAAATACATCATATGTTAAAGTTCAACC

>CP020953|6|4|3403451-3403680|CRT
TTTGCAAATACATCATATGTTAAAGTTCAACT	TTTATCAGGTCAGGAAAATTTAGCTATATTTGCT
AATTTAAATACATCATATGTTAAAGTTCAACT	ATAGACTCAGATCCTTCTACAAAACGTGATTTTC
TATTTAAATACATCATATGTTAAAGTTCAACT	CAACAGATTTGCTCTTAAAAAGTGGTAGTACTAG
TATTTAAATACATCATATGTTAAAGTTCAACC

>CP020953|6|6|3403456-3403680|CRISPRCasFinder
AAATACATCATATGTTAAAGTTCAACT	TTTATCAGGTCAGGAAAATTTAGCTATATTTGCTAATTT
AAATACATCATATGTTAAAGTTCAACT	ATAGACTCAGATCCTTCTACAAAACGTGATTTTCTATTT
AAATACATCATATGTTAAAGTTCAACT	CAACAGATTTGCTCTTAAAAAGTGGTAGTACTAGTATTT
AAATACATCATATGTTAAAGTTCAACC

>CP020953|6|4|3403518-3403679|PILER-CR
ATTTAAATACATCATATGTTAAAGTTCAAC	TATAGACTCAGATCCTTCTACAAAACGTGATTTTCT
ATTTAAATACATCATATGTTAAAGTTCAAC	TCAACAGATTTGCTCTTAAAAAGTGGTAGTACTAGT
ATTTAAATACATCATATGTTAAAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI05773.1\|3414601_3415648_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP020953.1\|AWI05756.1\|3392232_3392655_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319924
CP020953.1\|AWI05774.1\|3415656_3416418_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP020953.1\|AWI05760.1\|3395370_3397044_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05755.1\|3391665_3392184_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP020953.1\|AWI05759.1\|3394529_3395237_-\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP020953.1\|AWI05762.1\|3399630_3401313_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05757.1\|3392676_3393261_-\|transferase	unknown	unknown	gnl\|CDD\|100047
CP020953.1\|AWI05768.1\|3409611_3410055_+\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05761.1\|3397274_3398951_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP020953.1\|AWI05766.1\|3407886_3408441_-\|flavodoxin	unknown	unknown	gnl\|CDD\|223728
CP020953.1\|AWI05772.1\|3413519_3414602_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP020953.1\|AWI05764.1\|3401985_3402399_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378906
CP020953.1\|AWI05770.1\|3411359_3412052_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05765.1\|3403890_3406290_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
CP020953.1\|AWI05763.1\|3401462_3401912_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05758.1\|3393506_3394259_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|128898

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI05773.1\|3414601_3415648_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	1.04494e-16
CP020953.1\|AWI05756.1\|3392232_3392655_-\|hypothetical-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.18715e-45
CP020953.1\|AWI05774.1\|3415656_3416418_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	9.92516e-82
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.73146e-11
CP020953.1\|AWI05760.1\|3395370_3397044_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	5.61129e-75
CP020953.1\|AWI05755.1\|3391665_3392184_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.75606e-09
CP020953.1\|AWI05759.1\|3394529_3395237_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.68724e-07
CP020953.1\|AWI05762.1\|3399630_3401313_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	3.78e-73
CP020953.1\|AWI05757.1\|3392676_3393261_-\|transferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	9.04484e-90
CP020953.1\|AWI05761.1\|3397274_3398951_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	7.22243e-72
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	7.08496e-09
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.88309e-34
CP020953.1\|AWI05766.1\|3407886_3408441_-\|flavodoxin	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.4025e-30
CP020953.1\|AWI05772.1\|3413519_3414602_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.81728e-14
CP020953.1\|AWI05764.1\|3401985_3402399_-\|hypothetical-protein	gnl\|CDD\|378906	pfam12663, DUF3788, Protein of unknown function (DUF3788). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length. This family may be distantly related to RelE proteins.	1.42119e-43
CP020953.1\|AWI05765.1\|3403890_3406290_-\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
CP020953.1\|AWI05758.1\|3393506_3394259_-\|SAM-dependent-methyltransferase	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	1.19618e-17

>CP020953.1|AWI05764.1|3401985_3402399_-|hypothetical-protein
MLDKIPTSEDLITLIGKSLFEVWTALCDMIEEKYDMEHLWNNGGKAWKYEYKYRRGGKTLCALYVKENCFGLMIIFGKNERAKFEEDKQNYSIEVQKVYDESKTYHDGKWMMFELVDKSLFGDMEKMLFIKRKSNKK
>CP020953.1|AWI05763.1|3401462_3401912_-|hypothetical-protein
MKTLSIDANDEEIKDLVIEWNELLAAEKYEEALSMFPSHKLEVEWTPELLEQAVYGYGVVGYTREEIKEMFGPEDYKVTSIFDNKEKNKIINSIEVSRDWNFKDENIIGMVHYDCVPLNGELSDLTARFHIRKIYDNNVTLEFLDLHVM
>CP020953.1|AWI05762.1|3399630_3401313_-|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLIPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELYIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLKSNIMDDEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKHYNEKTVIIIDEYDVPIQGGYTGNYYEDIINFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLNVYSILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENVIYNPWCILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGHQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKNTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTMNYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>CP020953.1|AWI05761.1|3397274_3398951_-|AAA-family-ATPase
MKKIPIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFEKLNIYEHKDIMGKQGIYPVIYITFKDLKDKNIDKCYEKIKEILIEQYDKFQFILDTLSEVDKMYYNDILLGKASEAQYETSLKNLSKFLSRYYGVNVVILIDEYDVPIQSGYLNDYYEDIVEFMRNFLSGGVKDNEYLEKAVMTGILRVAKESIFSGLNNLSVYGILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENIIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKEINEDVEMKEIDKSTENVWSFLLLSGYLKTVKKIRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTINYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>CP020953.1|AWI05760.1|3395370_3397044_-|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELYIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLESNIMDYEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKYYNKKAVIIIDEYDVPIQGGYTGDYYEDIISFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLNVYSILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENVIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGHQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWFRESINNDEFNFMLNSLINGDIKTFGKILKKFVLSSVSYFDISGQESEKVYHAFVLGMLIALSEDYEVKSNRESGYGRYDVMIIQKDKNKIGIIMEFKKVDRDDEEDLKKAAEEGLKQIRKRKYKQELIAREIKNIIEIGVAFEGKDVMVLT
>CP020953.1|AWI05759.1|3394529_3395237_-|hypothetical-protein
MRIFECNFKVFLIKNILKEDVQEAISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYGEGEIYNFQIRCVGEELKNHFVKFLTNEYTTHIKALTCQSKSIFKKPIDRVYSITPAVIKISDLEKTEYWRNNHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERVDNRTPIATNFKGRRMLGDKITLTVDTGIEAQNIAYMLLGTGIGDMSPRGYGYMNYQYIK
>CP020953.1|AWI05758.1|3393506_3394259_-|SAM-dependent-methyltransferase
MDFRKVFDSIPKEFDEWRTRYCDELFADVIEYSKLGCSKTVLEIGPGTGQATEPILKTGCSYLAIELGENLAEYTKKKFSSYDNFQIVNDDFETYDFGYNQFDLVYSAATIQWIPEKIGFKKVYDILKNNGTFAMMLTRTDEKSANEALYLKIQKVYAEYFRPETEYTCHLNYNNIKKYGFTNIEYFEYHKTRVLNSDEYVLWISTHATHITLKEPYKSKFYAGIKEAILSFGNNIKLYDTIVLYLAIKA
>CP020953.1|AWI05757.1|3392676_3393261_-|transferase
MDFTEIMKHNKGYFSKHTDAQPKLQRKAKELCWRYNQTGPSEEEKRSSILKELLGTYHPLTFIEPSFRCDYGFNIHTHGLTVINYNCVILDTSPVYIGANAFIAPGVCLACSGHAILPKQRAEGIGTSKPITIEDDVWIGANAVVCGGVTIGKGSIIGAGSVVNKDIPAGVIAVGNPCKVLREITEEDLISLSN
>CP020953.1|AWI05756.1|3392232_3392655_-|hypothetical-protein
MIQSVVHIALVVKDYDEAIEFYTKKLHFTLVEDTYQPEQEKRWVVVSPPGSNGTTILLARASKPEQKPFIGNQAGGRVFLFLGTDDFWRDYNEMIEIGIEFVREPKEQDYGIVAVFKDLYGNLWDLVQFNENHPMFKRVK
>CP020953.1|AWI05755.1|3391665_3392184_-|N-acetyltransferase
MIRVAATYDILEIENIYNEILDYEEKTVSYTNWQKGLYPTVDYARSAIGNSTMFVGENEKGIYGCVVLNSIQPKEYGNISWGIKAKPSEIMVIHTLCIRPSESRKGKGKIMMDFIEKYAKEKGYKAIRLDTYEGNIPAGTLYPKLGYHYVGTTKFHFQNVIWENLKCFEKSL
>CP020953.1|AWI05765.1|3403890_3406290_-|valine--tRNA-ligase
MLDKKYDPIKNEKKWQKFWQENRIYKYDFVSDKKTFSIDTPPPTISGSLHIGHIFSYTQAEIIARFHRMQGENVFYPFGFDDNGLPTERLIEKEENIRANSIPRSEFTEKCMVTTKKYEEDFKNLWMSMGFSVDWSLQYKTIGSTARKISQKAFLDMAKLRKAYIKESPVLWCTTCRTSIAQAELESADKETTFNYVTFICEDSELIIATTRPELLYSCVCLFINPEDERYLKYLGKRALVPLYNYEIPIFSDEKVSMDKGTGIVMCATFGDTTDVEWYKKYKLPYRKTIEENGKISEGVPFIGGLGTLNAREKIIQLLKDNNILVKSETITHSVSIHERCGKAIEIIPSKQWYIDILSEKERYLKAADEINWYPASMKNKYITWVENLKWDWCISRQRYFGVPFPIWYCKKCGKPIFAKDEELPINPIETNPSDPCSCGSTDFIPETAVFDTWATSSLTPLINSKWNTDKDMTEELLPMGMRTQAHEIIRTWTFYTIVRSLFHTGKIPWKDIMLCGFVLAKKGEKISKSKNNAPSSPKELIKRHSADALRYWASSAKLGTDTMFSEEELKTSKRFLNKLWNASAFCIMQLEDYDEVKPIKLLPIDKWILEKIKILEKNSIENLNQYETGLAKHDIDEFFWNDFCDNYLEIIKDRLYKPEIHGKDERLSGQYTLYNALLEILKLYSIYVPHITEEVYQSFYRNFENCISIHKMQWSMKFDNNDENILQFGENVKKIIGEVRRYKSERNLSLKEKINILKISIPKSYEEYITQTLKDIKACTWAEDIEVKFSDKYDVEIL
>CP020953.1|AWI05766.1|3407886_3408441_-|flavodoxin
MSKVVIFKGSPRKNGYTSRLLEQVAKGAKSKGAEVIEFDLNDPGIRGCQGCYYCRTHDGCAVNDYLQPMYKAIDEADAIVFGSPIYYYQITGQARVWLDRTFPMVGENFAPRHSGKKAITIFAQGNPNPQIAEEGIKFVTNIFETYGWKIEDSIHYCGTSSNPDLEKFEELSLRAFKDGENLVG
>CP020953.1|AWI05767.1|3408561_3408882_+|transcriptional-regulator
MEDCYVKYAMDVIGGKWKLLIIWTMYQNGVIRFNELQRKVEGISSLMLSKNLKELEKDCLIVRHQYNEIPPRVEYELSGLSEKLIVVLESLSNWGYEVYKYKNNSI
>CP020953.1|AWI05768.1|3409611_3410055_+|hypothetical-protein
MENMVTVSKSAVGISILFILYLVTFTINLPLIIDSKLSYFNFFATVFYLLAWTGYGIYLYKKKELAFFLYALAYWILVMVASITSNILFIIIFFTPLCGLRMFFVWLNYPTNLAFEKEPYAYLFISIIFVTLSVLAIILIKSNKKLN
>CP020953.1|AWI05769.1|3410471_3410942_-|N-acetyltransferase
MDITIIKGNINYIDECEAALVNSELGIRYFDKKGSARDALKEGFDKRQVYVAIDDNNNCKGFIWVILNGAFHSFPYLHIIAVNQESRGKGIGKKLLKFFEYICFKDYSKLFLVVGDFNSAARILYERIGYVQVGTIPDLYREGITENLMMKSREEN
>CP020953.1|AWI05770.1|3411359_3412052_-|hypothetical-protein
MNFYELRIKVKLSQNMDLIEVPYNIGVFINNSMLKTALLKKIHEEKFYKYVYDTFYPMEKDKLYKKDKIYYFRLRSMNIQLLNKMAIAIYNHDYNNIKAIDVDLKVQEVDKINEIYTLKPAIVTIDSKPWLKEKYSVDLLMKRLNDNLEKKLNQIGEECEVVGLGSFINGIEILNKFPMKYRYKSINLLGNKVQIKVNEDKLSQKKALIAVALGLGEKGSSLGAGFCEYK
>CP020953.1|AWI05771.1|3412053_3413523_-|hypothetical-protein
MKNILITNLGNRDLQIHKDNVRAIKELYNDDEKMKDILNKGRLEDDGYMVFSKIFRELTQKILEYYPKGIEYIDFPIIKSIVKKVEGDLENEKLEKIILMVTDQQDIKHNGQDTVYLGEIIERLHRDKKLEIGLNQSKDNIEIASFCTKSNPSDYDEMRKFYQEKLSKEYDSNKIFLNITGGTPAMAFGLLYNASINASCRVIPFYTKQNTNRTVKFNISETLRKDDDKKQICEFITKNDYMTANILLEKYNNKYGVLEGKYETALNMVKAAHARIQFDFESASRYIDKAQDYDSGSRAVCDRFIYFIKELQNKQKIYLLNELKNNAIYEYENGAYTDFLGRVFRSLEDIYRFILIKKNILKINENDNLKLNKAELESAGIIVKGKLNVPQMSTILEKILEKESEEYKLYIHCTKMDKLRQIRNDSVLAHGYKGVSKDKIDREIGNAIEFLGNLIVQYKKVFNIEINDDHFYDKNGEFNSHLIKLIEEI
>CP020953.1|AWI05772.1|3413519_3414602_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSYLQKDIINLKIKTLAPIAILNDDNSKLSPYIDVIRDKDEYILLDIDKISDILISDEKYYNKYLEILRNKRSNSRDKYTIKNLLRDKNIKLEEVEAGRIKCSCNIKGNVEINTCIKSKGIPYIPGSSLKGGIRTAVLYNKIDKNDVVGKQKIFSREYVGQDIFRKNPKSVQEDIFKNLIIRDTEIDSNIQTSIYEARSINIYKDINSEKLNLDMKMLLECIDQNQTLNSQIILKGNDFKKEDLFYKINDFYEKAINKELGEISKVRFNEKDILINEYSLLLEKIRKFKNDKNGFISRVGKLKGFFSNTLTAELNDDEIYNFAIYPKKRRKKGEFPTTKWVISSDNDIRGTFGWIEVKER
>CP020953.1|AWI05773.1|3414601_3415648_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVTLSFKNNAKLHIGEELYDYISSDKLYSMIINALSYIISVDELNGIVNLINEKVRISSAFLGLKVTKNNISNNIEFLPKPYILIKEKEISKEIEEENLINRKKYKNILWISSNSFGNMSKNYDLQEDLINYSFKNGFIIDGKYYVENEEVDEDVQKVLEDYSPIKKDMIQRNIIDRYTKESLNTYYDTFSMFSNKETDCIRIEPYLYFFLDDKEEILKDNYIQALQFISIGGKRSLGAGVVEKIGISNYKLDIYDNEKIYINFSMIYPNKKDLSKISKYSLENRNGFIFSKRSTNIKKPTLRMIKEGSIFNGKAEGEIYSLKVDGVNHDIHVYGKAFLSPFGGEK
>CP020953.1|AWI05774.1|3415656_3416418_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MLGRLIINADLVVKTGLHIGGGSSSVEIGGIDNSVIKNHKGEPYIPGSSLKGKLRSLTELAHNKIGKNEKGENLPCNCGECFICKIYGVSASEENKSTDRLPTRIIVRDAFLKDSIAETMRRKEKDFKDLELSYTESKWENSIDRLTSKANPRLFERVPEGAIFDLEIIYTIYKEEDIENIKNLIEGFQFLEDDYLGGNGTRGYGKVKFENIRFFTKTIKDYTSKQFGDTKASVDEIDDIWIGKLKEQMIDTK

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Crispr_ID: CP020953_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_7

3406914-3407670

TypeIII

III-B

Consensus_repeat	Method
ATTTAAATACATCCTATGTTAAAGTTCAAC	CRISPRCasFinder
ATTTAAATACATCCTATGTTAAAGTTCAAC	CRT
ATTTAAATACATCCTATGTTAAAGTTCAAC	PILER-CR

11 spacers

cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11

The CRISPR arrays of CP020953_7

>merge|CP020953|7|3406914-3407670|CRISPRCasFinder,CRT,PILER-CR
TCATGTATACATCATATGTTAAAGTTCAACTAGCACTTAATAATGCAACTTATTATGTAGGACAAGCATTTAAATACATCCTATGTTAAAGTTCAACTTACTTTTTTTATTATTTGATATGAACCATTTACATCATTTAAATACATCCTATGTTAAAGTTCAACAGAGAAAAAGGAAACATACCAGCAATTAAAATTGTTATTTAAATACATCCTATGTTAAAGTTCAACCTATGGCACAAACTAAAACTGTTCAAGAAGCAGCAGCATTTAAATACATCCTATGTTAAAGTTCAACGCATCTTTAAACGTTACTTTAGTATTAGTAAAATTAATTTAAATACATCCTATGTTAAAGTTCAACATAATAAACATGGCAAGTGCTATTACTGTGTATGATTTAAATACATCCTATGTTAAAGTTCAACGGATTAGTTTTAAAAGATATTTTAGAAAGTTAAGTATTTAAATACATCCTATGTTAAAGTTCAACAAAATAGTCTTTTCAAATATAGAGCTACATCGCAAATTTAAATACATCCTATGTTAAAGTTCAACTAATGAGGAAATAAAAACAATACAGTCTAAATATAAATTTAAATACATCCTATGTTAAAGTTCAACATTTATTAAGTGTTTCACCTTCAACTTTTGTTATTTCATTTAAATACATCCTATGTTAAAGTTCAACCTGACCAGGATTTAGTTAATGCAGTTCAAGAAAATATATTTAAATACATCCTATGTTAAAGTTCAAC

>CP020953|7|7|3406914-3407670|CRISPRCasFinder
TCATGTATACATCATATGTTAAAGTTCAAC	TAGCACTTAATAATGCAACTTATTATGTAGGACAAGC
ATTTAAATACATCCTATGTTAAAGTTCAAC	TTACTTTTTTTATTATTTGATATGAACCATTTACATC
ATTTAAATACATCCTATGTTAAAGTTCAAC	AGAGAAAAAGGAAACATACCAGCAATTAAAATTGTT
ATTTAAATACATCCTATGTTAAAGTTCAAC	CTATGGCACAAACTAAAACTGTTCAAGAAGCAGCAGC
ATTTAAATACATCCTATGTTAAAGTTCAAC	GCATCTTTAAACGTTACTTTAGTATTAGTAAAATTA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATAATAAACATGGCAAGTGCTATTACTGTGTATG
ATTTAAATACATCCTATGTTAAAGTTCAAC	GGATTAGTTTTAAAAGATATTTTAGAAAGTTAAGT
ATTTAAATACATCCTATGTTAAAGTTCAAC	AAAATAGTCTTTTCAAATATAGAGCTACATCGCAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	TAATGAGGAAATAAAAACAATACAGTCTAAATATAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATTTATTAAGTGTTTCACCTTCAACTTTTGTTATTTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	CTGACCAGGATTTAGTTAATGCAGTTCAAGAAAATAT
ATTTAAATACATCCTATGTTAAAGTTCAAC

>CP020953|7|5|3406914-3407670|CRT
TCATGTATACATCATATGTTAAAGTTCAAC	TAGCACTTAATAATGCAACTTATTATGTAGGACAAGC
ATTTAAATACATCCTATGTTAAAGTTCAAC	TTACTTTTTTTATTATTTGATATGAACCATTTACATC
ATTTAAATACATCCTATGTTAAAGTTCAAC	AGAGAAAAAGGAAACATACCAGCAATTAAAATTGTT
ATTTAAATACATCCTATGTTAAAGTTCAAC	CTATGGCACAAACTAAAACTGTTCAAGAAGCAGCAGC
ATTTAAATACATCCTATGTTAAAGTTCAAC	GCATCTTTAAACGTTACTTTAGTATTAGTAAAATTA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATAATAAACATGGCAAGTGCTATTACTGTGTATG
ATTTAAATACATCCTATGTTAAAGTTCAAC	GGATTAGTTTTAAAAGATATTTTAGAAAGTTAAGT
ATTTAAATACATCCTATGTTAAAGTTCAAC	AAAATAGTCTTTTCAAATATAGAGCTACATCGCAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	TAATGAGGAAATAAAAACAATACAGTCTAAATATAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATTTATTAAGTGTTTCACCTTCAACTTTTGTTATTTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	CTGACCAGGATTTAGTTAATGCAGTTCAAGAAAATAT
ATTTAAATACATCCTATGTTAAAGTTCAAC

>CP020953|7|5|3406981-3407670|PILER-CR
ATTTAAATACATCCTATGTTAAAGTTCAAC	TTACTTTTTTTATTATTTGATATGAACCATTTACATC
ATTTAAATACATCCTATGTTAAAGTTCAAC	AGAGAAAAAGGAAACATACCAGCAATTAAAATTGTT
ATTTAAATACATCCTATGTTAAAGTTCAAC	CTATGGCACAAACTAAAACTGTTCAAGAAGCAGCAGC
ATTTAAATACATCCTATGTTAAAGTTCAAC	GCATCTTTAAACGTTACTTTAGTATTAGTAAAATTA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATAATAAACATGGCAAGTGCTATTACTGTGTATG
ATTTAAATACATCCTATGTTAAAGTTCAAC	GGATTAGTTTTAAAAGATATTTTAGAAAGTTAAGT
ATTTAAATACATCCTATGTTAAAGTTCAAC	AAAATAGTCTTTTCAAATATAGAGCTACATCGCAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	TAATGAGGAAATAAAAACAATACAGTCTAAATATAA
ATTTAAATACATCCTATGTTAAAGTTCAAC	ATTTATTAAGTGTTTCACCTTCAACTTTTGTTATTTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	CTGACCAGGATTTAGTTAATGCAGTTCAAGAAAATAT
ATTTAAATACATCCTATGTTAAAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI05775.1\|3416435_3416966_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP020953.1\|AWI05756.1\|3392232_3392655_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319924
CP020953.1\|AWI05774.1\|3415656_3416418_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP020953.1\|AWI05760.1\|3395370_3397044_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05773.1\|3414601_3415648_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP020953.1\|AWI05759.1\|3394529_3395237_-\|hypothetical-protein	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP020953.1\|AWI05762.1\|3399630_3401313_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05757.1\|3392676_3393261_-\|transferase	unknown	unknown	gnl\|CDD\|100047
CP020953.1\|AWI05768.1\|3409611_3410055_+\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05761.1\|3397274_3398951_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP020953.1\|AWI05766.1\|3407886_3408441_-\|flavodoxin	unknown	unknown	gnl\|CDD\|223728
CP020953.1\|AWI05772.1\|3413519_3414602_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP020953.1\|AWI05764.1\|3401985_3402399_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378906
CP020953.1\|AWI05770.1\|3411359_3412052_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05765.1\|3403890_3406290_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237306
CP020953.1\|AWI05763.1\|3401462_3401912_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05758.1\|3393506_3394259_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|128898

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI05775.1\|3416435_3416966_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.96678e-14
CP020953.1\|AWI05756.1\|3392232_3392655_-\|hypothetical-protein	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.18715e-45
CP020953.1\|AWI05774.1\|3415656_3416418_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	9.92516e-82
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.73146e-11
CP020953.1\|AWI05760.1\|3395370_3397044_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	5.61129e-75
CP020953.1\|AWI05773.1\|3414601_3415648_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	1.04494e-16
CP020953.1\|AWI05759.1\|3394529_3395237_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.68724e-07
CP020953.1\|AWI05762.1\|3399630_3401313_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	3.78e-73
CP020953.1\|AWI05757.1\|3392676_3393261_-\|transferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	9.04484e-90
CP020953.1\|AWI05761.1\|3397274_3398951_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	7.22243e-72
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	7.08496e-09
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.88309e-34
CP020953.1\|AWI05766.1\|3407886_3408441_-\|flavodoxin	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.4025e-30
CP020953.1\|AWI05772.1\|3413519_3414602_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.81728e-14
CP020953.1\|AWI05764.1\|3401985_3402399_-\|hypothetical-protein	gnl\|CDD\|378906	pfam12663, DUF3788, Protein of unknown function (DUF3788). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length. This family may be distantly related to RelE proteins.	1.42119e-43
CP020953.1\|AWI05765.1\|3403890_3406290_-\|valine--tRNA-ligase	gnl\|CDD\|237306	PRK13208, valS, valyl-tRNA synthetase; Reviewed.	0
CP020953.1\|AWI05758.1\|3393506_3394259_-\|SAM-dependent-methyltransferase	gnl\|CDD\|128898	smart00650, rADc, Ribosomal RNA adenine dimethylases.	1.19618e-17

>CP020953.1|AWI05765.1|3403890_3406290_-|valine--tRNA-ligase
MLDKKYDPIKNEKKWQKFWQENRIYKYDFVSDKKTFSIDTPPPTISGSLHIGHIFSYTQAEIIARFHRMQGENVFYPFGFDDNGLPTERLIEKEENIRANSIPRSEFTEKCMVTTKKYEEDFKNLWMSMGFSVDWSLQYKTIGSTARKISQKAFLDMAKLRKAYIKESPVLWCTTCRTSIAQAELESADKETTFNYVTFICEDSELIIATTRPELLYSCVCLFINPEDERYLKYLGKRALVPLYNYEIPIFSDEKVSMDKGTGIVMCATFGDTTDVEWYKKYKLPYRKTIEENGKISEGVPFIGGLGTLNAREKIIQLLKDNNILVKSETITHSVSIHERCGKAIEIIPSKQWYIDILSEKERYLKAADEINWYPASMKNKYITWVENLKWDWCISRQRYFGVPFPIWYCKKCGKPIFAKDEELPINPIETNPSDPCSCGSTDFIPETAVFDTWATSSLTPLINSKWNTDKDMTEELLPMGMRTQAHEIIRTWTFYTIVRSLFHTGKIPWKDIMLCGFVLAKKGEKISKSKNNAPSSPKELIKRHSADALRYWASSAKLGTDTMFSEEELKTSKRFLNKLWNASAFCIMQLEDYDEVKPIKLLPIDKWILEKIKILEKNSIENLNQYETGLAKHDIDEFFWNDFCDNYLEIIKDRLYKPEIHGKDERLSGQYTLYNALLEILKLYSIYVPHITEEVYQSFYRNFENCISIHKMQWSMKFDNNDENILQFGENVKKIIGEVRRYKSERNLSLKEKINILKISIPKSYEEYITQTLKDIKACTWAEDIEVKFSDKYDVEIL
>CP020953.1|AWI05764.1|3401985_3402399_-|hypothetical-protein
MLDKIPTSEDLITLIGKSLFEVWTALCDMIEEKYDMEHLWNNGGKAWKYEYKYRRGGKTLCALYVKENCFGLMIIFGKNERAKFEEDKQNYSIEVQKVYDESKTYHDGKWMMFELVDKSLFGDMEKMLFIKRKSNKK
>CP020953.1|AWI05763.1|3401462_3401912_-|hypothetical-protein
MKTLSIDANDEEIKDLVIEWNELLAAEKYEEALSMFPSHKLEVEWTPELLEQAVYGYGVVGYTREEIKEMFGPEDYKVTSIFDNKEKNKIINSIEVSRDWNFKDENIIGMVHYDCVPLNGELSDLTARFHIRKIYDNNVTLEFLDLHVM
>CP020953.1|AWI05762.1|3399630_3401313_-|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLIPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELYIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLKSNIMDDEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKHYNEKTVIIIDEYDVPIQGGYTGNYYEDIINFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLNVYSILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENVIYNPWCILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGHQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKNTRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTMNYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>CP020953.1|AWI05761.1|3397274_3398951_-|AAA-family-ATPase
MKKIPIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFEKLNIYEHKDIMGKQGIYPVIYITFKDLKDKNIDKCYEKIKEILIEQYDKFQFILDTLSEVDKMYYNDILLGKASEAQYETSLKNLSKFLSRYYGVNVVILIDEYDVPIQSGYLNDYYEDIVEFMRNFLSGGVKDNEYLEKAVMTGILRVAKESIFSGLNNLSVYGILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENIIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGQQLKSELEDLIQDKSITKEINEDVEMKEIDKSTENVWSFLLLSGYLKTVKKIRKPDGRLVCELAIPNIEVKYLYNEIIMSWLKESVNNDEFNLMLNSLTNGDIENFEDIFADYVVKSFSYFDIGDESENFYHAFVLGILVALNNKYRVKSNRESGYGRYDIMIIPKDIGKNGIIIEFKKVNKRRKETLNTAAENALAQIKTINYRQELIELRVKNIIELGIAFEGKDVFVLKSSDS
>CP020953.1|AWI05760.1|3395370_3397044_-|AAA-family-ATPase
MKKISIGITDFKEIINNNYYLVDKSLFIKEIMEDGSKVLLLPRPRRFGKTINMSMLKYFFEKTDEDNSFLFKELYIYKCKDVMEKQGKYPVIYLTFKDEKYLSWKDCKSGMKFVIGNEFKRHKYLLESNIMDYEEKETYKDIMNLKADDIYYHKSLLSLSMYLSKYYNKKAVIIIDEYDVPIQGGYTGDYYEDIISFMRNFLSGGLKDNIYLEKAILTGILRVAKESIFSGLNNLNVYSILKNKYSSYFGFSEVEIEEIFKYYEVEFKLDEVKSWYNGYVFGENVIYNPWSILNYVNNYEEGLQPYWINTSSNDLVKSLITKGGHQLKSELEDLIQDKSITKEINENIEMKEIDKSTENVWSFLLLSGYLKTVKKTRKPDGRLVCELAIPNIEVKYLYNEIIMSWFRESINNDEFNFMLNSLINGDIKTFGKILKKFVLSSVSYFDISGQESEKVYHAFVLGMLIALSEDYEVKSNRESGYGRYDVMIIQKDKNKIGIIMEFKKVDRDDEEDLKKAAEEGLKQIRKRKYKQELIAREIKNIIEIGVAFEGKDVMVLT
>CP020953.1|AWI05759.1|3394529_3395237_-|hypothetical-protein
MRIFECNFKVFLIKNILKEDVQEAISKLIDKSFYKNESLKDFHEENRIKGYCFNSLYPISINKDYGEGEIYNFQIRCVGEELKNHFVKFLTNEYTTHIKALTCQSKSIFKKPIDRVYSITPAVIKISDLEKTEYWRNNHNEEDFFEYIRENSIKKYEVLTGEKVDRSLRIFTYERVDNRTPIATNFKGRRMLGDKITLTVDTGIEAQNIAYMLLGTGIGDMSPRGYGYMNYQYIK
>CP020953.1|AWI05758.1|3393506_3394259_-|SAM-dependent-methyltransferase
MDFRKVFDSIPKEFDEWRTRYCDELFADVIEYSKLGCSKTVLEIGPGTGQATEPILKTGCSYLAIELGENLAEYTKKKFSSYDNFQIVNDDFETYDFGYNQFDLVYSAATIQWIPEKIGFKKVYDILKNNGTFAMMLTRTDEKSANEALYLKIQKVYAEYFRPETEYTCHLNYNNIKKYGFTNIEYFEYHKTRVLNSDEYVLWISTHATHITLKEPYKSKFYAGIKEAILSFGNNIKLYDTIVLYLAIKA
>CP020953.1|AWI05757.1|3392676_3393261_-|transferase
MDFTEIMKHNKGYFSKHTDAQPKLQRKAKELCWRYNQTGPSEEEKRSSILKELLGTYHPLTFIEPSFRCDYGFNIHTHGLTVINYNCVILDTSPVYIGANAFIAPGVCLACSGHAILPKQRAEGIGTSKPITIEDDVWIGANAVVCGGVTIGKGSIIGAGSVVNKDIPAGVIAVGNPCKVLREITEEDLISLSN
>CP020953.1|AWI05756.1|3392232_3392655_-|hypothetical-protein
MIQSVVHIALVVKDYDEAIEFYTKKLHFTLVEDTYQPEQEKRWVVVSPPGSNGTTILLARASKPEQKPFIGNQAGGRVFLFLGTDDFWRDYNEMIEIGIEFVREPKEQDYGIVAVFKDLYGNLWDLVQFNENHPMFKRVK
>CP020953.1|AWI05766.1|3407886_3408441_-|flavodoxin
MSKVVIFKGSPRKNGYTSRLLEQVAKGAKSKGAEVIEFDLNDPGIRGCQGCYYCRTHDGCAVNDYLQPMYKAIDEADAIVFGSPIYYYQITGQARVWLDRTFPMVGENFAPRHSGKKAITIFAQGNPNPQIAEEGIKFVTNIFETYGWKIEDSIHYCGTSSNPDLEKFEELSLRAFKDGENLVG
>CP020953.1|AWI05767.1|3408561_3408882_+|transcriptional-regulator
MEDCYVKYAMDVIGGKWKLLIIWTMYQNGVIRFNELQRKVEGISSLMLSKNLKELEKDCLIVRHQYNEIPPRVEYELSGLSEKLIVVLESLSNWGYEVYKYKNNSI
>CP020953.1|AWI05768.1|3409611_3410055_+|hypothetical-protein
MENMVTVSKSAVGISILFILYLVTFTINLPLIIDSKLSYFNFFATVFYLLAWTGYGIYLYKKKELAFFLYALAYWILVMVASITSNILFIIIFFTPLCGLRMFFVWLNYPTNLAFEKEPYAYLFISIIFVTLSVLAIILIKSNKKLN
>CP020953.1|AWI05769.1|3410471_3410942_-|N-acetyltransferase
MDITIIKGNINYIDECEAALVNSELGIRYFDKKGSARDALKEGFDKRQVYVAIDDNNNCKGFIWVILNGAFHSFPYLHIIAVNQESRGKGIGKKLLKFFEYICFKDYSKLFLVVGDFNSAARILYERIGYVQVGTIPDLYREGITENLMMKSREEN
>CP020953.1|AWI05770.1|3411359_3412052_-|hypothetical-protein
MNFYELRIKVKLSQNMDLIEVPYNIGVFINNSMLKTALLKKIHEEKFYKYVYDTFYPMEKDKLYKKDKIYYFRLRSMNIQLLNKMAIAIYNHDYNNIKAIDVDLKVQEVDKINEIYTLKPAIVTIDSKPWLKEKYSVDLLMKRLNDNLEKKLNQIGEECEVVGLGSFINGIEILNKFPMKYRYKSINLLGNKVQIKVNEDKLSQKKALIAVALGLGEKGSSLGAGFCEYK
>CP020953.1|AWI05771.1|3412053_3413523_-|hypothetical-protein
MKNILITNLGNRDLQIHKDNVRAIKELYNDDEKMKDILNKGRLEDDGYMVFSKIFRELTQKILEYYPKGIEYIDFPIIKSIVKKVEGDLENEKLEKIILMVTDQQDIKHNGQDTVYLGEIIERLHRDKKLEIGLNQSKDNIEIASFCTKSNPSDYDEMRKFYQEKLSKEYDSNKIFLNITGGTPAMAFGLLYNASINASCRVIPFYTKQNTNRTVKFNISETLRKDDDKKQICEFITKNDYMTANILLEKYNNKYGVLEGKYETALNMVKAAHARIQFDFESASRYIDKAQDYDSGSRAVCDRFIYFIKELQNKQKIYLLNELKNNAIYEYENGAYTDFLGRVFRSLEDIYRFILIKKNILKINENDNLKLNKAELESAGIIVKGKLNVPQMSTILEKILEKESEEYKLYIHCTKMDKLRQIRNDSVLAHGYKGVSKDKIDREIGNAIEFLGNLIVQYKKVFNIEINDDHFYDKNGEFNSHLIKLIEEI
>CP020953.1|AWI05772.1|3413519_3414602_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSYLQKDIINLKIKTLAPIAILNDDNSKLSPYIDVIRDKDEYILLDIDKISDILISDEKYYNKYLEILRNKRSNSRDKYTIKNLLRDKNIKLEEVEAGRIKCSCNIKGNVEINTCIKSKGIPYIPGSSLKGGIRTAVLYNKIDKNDVVGKQKIFSREYVGQDIFRKNPKSVQEDIFKNLIIRDTEIDSNIQTSIYEARSINIYKDINSEKLNLDMKMLLECIDQNQTLNSQIILKGNDFKKEDLFYKINDFYEKAINKELGEISKVRFNEKDILINEYSLLLEKIRKFKNDKNGFISRVGKLKGFFSNTLTAELNDDEIYNFAIYPKKRRKKGEFPTTKWVISSDNDIRGTFGWIEVKER
>CP020953.1|AWI05773.1|3414601_3415648_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVTLSFKNNAKLHIGEELYDYISSDKLYSMIINALSYIISVDELNGIVNLINEKVRISSAFLGLKVTKNNISNNIEFLPKPYILIKEKEISKEIEEENLINRKKYKNILWISSNSFGNMSKNYDLQEDLINYSFKNGFIIDGKYYVENEEVDEDVQKVLEDYSPIKKDMIQRNIIDRYTKESLNTYYDTFSMFSNKETDCIRIEPYLYFFLDDKEEILKDNYIQALQFISIGGKRSLGAGVVEKIGISNYKLDIYDNEKIYINFSMIYPNKKDLSKISKYSLENRNGFIFSKRSTNIKKPTLRMIKEGSIFNGKAEGEIYSLKVDGVNHDIHVYGKAFLSPFGGEK
>CP020953.1|AWI05774.1|3415656_3416418_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MLGRLIINADLVVKTGLHIGGGSSSVEIGGIDNSVIKNHKGEPYIPGSSLKGKLRSLTELAHNKIGKNEKGENLPCNCGECFICKIYGVSASEENKSTDRLPTRIIVRDAFLKDSIAETMRRKEKDFKDLELSYTESKWENSIDRLTSKANPRLFERVPEGAIFDLEIIYTIYKEEDIENIKNLIEGFQFLEDDYLGGNGTRGYGKVKFENIRFFTKTIKDYTSKQFGDTKASVDEIDDIWIGKLKEQMIDTK
>CP020953.1|AWI05775.1|3416435_3416966_-|type-III-A-CRISPR-associated-protein-Csm2
MPISGLSAIVGRYKGGGIIVNNNSGWNNRNHQNNKFQNGKPQNRNERYDDSEKYANYFNEIILKITSLKEEYDKYINECKDYAYYLKRDGLTTSQVRKIYSDIMNAETAIDLKRLRPRLAYIIGKNERNRAIKSLINILDKGIEKLNIKDVDEEIKSLKEFMETIVAYRKYVGNDK

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Crispr_ID: CP020953_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020953_8

3419406-3419634

TypeIII

III-B

Consensus_repeat	Method
ATTTAAATACATCCTATGTTAAAGTTCAAC	PILER-CR
ATTTAAATACATCCTATGTTAAAGTTCAACCA	CRISPRCasFinder
ATTTAAATACATCCTATGTTAAAGTTCAAC	CRT

3 spacers

cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1

The CRISPR arrays of CP020953_8

>merge|CP020953|8|3419406-3419634|PILER-CR,CRISPRCasFinder,CRT
ATTTAAATACATCCTATGTTAAAGTTCAACGTTAAAACTTAATTTCCATCCATTTATTTTAGCTATATTTAAATACATCATATGTTAAAGTTCAACTCTCTAGCGCCAGCGTAGTTTACATTTCCACTGTCATTTAAATACATCCTATGTTAAAGTTCAACCAATTCTCAATGATAAAATATTCGGAGGGATTGTTAATTTAAATACATCCTATGTTAAAGTTCAACCA

>CP020953|8|6|3419406-3419632|PILER-CR
ATTTAAATACATCCTATGTTAAAGTTCAAC	GTTAAAACTTAATTTCCATCCATTTATTTTAGCTAT
ATTTAAATACATCATATGTTAAAGTTCAAC	TCTCTAGCGCCAGCGTAGTTTACATTTCCACTGTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	CAATTCTCAATGATAAAATATTCGGAGGGATTGTTA
ATTTAAATACATCCTATGTTAAAGTTCAAC

>CP020953|8|8|3419406-3419634|CRISPRCasFinder
ATTTAAATACATCCTATGTTAAAGTTCAACGT	TAAAACTTAATTTCCATCCATTTATTTTAGCTAT
ATTTAAATACATCATATGTTAAAGTTCAACTC	TCTAGCGCCAGCGTAGTTTACATTTCCACTGTC
ATTTAAATACATCCTATGTTAAAGTTCAACCA	ATTCTCAATGATAAAATATTCGGAGGGATTGTTA
ATTTAAATACATCCTATGTTAAAGTTCAACCA

>CP020953|8|6|3419406-3419632|CRT
ATTTAAATACATCCTATGTTAAAGTTCAAC	GTTAAAACTTAATTTCCATCCATTTATTTTAGCTAT
ATTTAAATACATCATATGTTAAAGTTCAAC	TCTCTAGCGCCAGCGTAGTTTACATTTCCACTGTC
ATTTAAATACATCCTATGTTAAAGTTCAAC	CAATTCTCAATGATAAAATATTCGGAGGGATTGTTA
ATTTAAATACATCCTATGTTAAAGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP020953.1\|AWI05785.1\|3429105_3429768_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225917
CP020953.1\|AWI05779.1\|3421453_3422881_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240543
CP020953.1\|AWI05776.1\|3416925_3419031_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP020953.1\|AWI05777.1\|3419842_3420646_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378535
CP020953.1\|AWI05784.1\|3427508_3428528_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238568
CP020953.1\|AWI05773.1\|3414601_3415648_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP020953.1\|AWI05778.1\|3420791_3421313_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|238496
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878
CP020953.1\|AWI05774.1\|3415656_3416418_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212
CP020953.1\|AWI05768.1\|3409611_3410055_+\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05781.1\|3424421_3424901_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI07785.1\|3426413_3427400_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
CP020953.1\|AWI05780.1\|3423063_3424215_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
CP020953.1\|AWI05775.1\|3416435_3416966_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP020953.1\|AWI05770.1\|3411359_3412052_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05783.1\|3425634_3426414_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|224045
CP020953.1\|AWI05782.1\|3425083_3425518_-\|hypothetical-protein	unknown	unknown	unknown
CP020953.1\|AWI05772.1\|3413519_3414602_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863

Protein	Function_ID	Function_description	E-value
CP020953.1\|AWI05785.1\|3429105_3429768_+\|hypothetical-protein	gnl\|CDD\|225917	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only].	5.16758e-31
CP020953.1\|AWI05776.1\|3416925_3419031_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.10064e-97
CP020953.1\|AWI05779.1\|3421453_3422881_-\|MATE-family-efflux-transporter	gnl\|CDD\|240543	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	6.34074e-120
CP020953.1\|AWI05769.1\|3410471_3410942_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.73146e-11
CP020953.1\|AWI05777.1\|3419842_3420646_-\|hypothetical-protein	gnl\|CDD\|378535	pfam10997, Amj, Alternate to MurJ. This bacterial family of proteins has no known function. However, family members include lipid II flippase Amj, which is required for bacterial cell wall synthesis. It transports lipid-linked peptidoglycan precursors from the inner to the outer surface of the cytoplasmic membrane.	4.84834e-106
CP020953.1\|AWI05784.1\|3427508_3428528_-\|hypothetical-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	4.88641e-73
CP020953.1\|AWI05773.1\|3414601_3415648_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	1.04494e-16
CP020953.1\|AWI05778.1\|3420791_3421313_-\|amidohydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	1.44185e-49
CP020953.1\|AWI05771.1\|3412053_3413523_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	7.08496e-09
CP020953.1\|AWI05774.1\|3415656_3416418_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	9.92516e-82
CP020953.1\|AWI05767.1\|3408561_3408882_+\|transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.88309e-34
CP020953.1\|AWI05780.1\|3423063_3424215_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.01363e-37
CP020953.1\|AWI05775.1\|3416435_3416966_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.96678e-14
CP020953.1\|AWI05783.1\|3425634_3426414_-\|ABC-transporter	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.80595e-97
CP020953.1\|AWI07785.1\|3426413_3427400_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	4.09614e-88
CP020953.1\|AWI05772.1\|3413519_3414602_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.81728e-14

>CP020953.1|AWI05776.1|3416925_3419031_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDCNKLIYAFAKYLKNIDEERYNKLLDIFFIENNDDIEKAYMAAIGNHVSQLRNKPIYKLKNILSNTNDSYLLFIKLELDFDSLNKSKKENNMIQKCVWDNYIDEVLDKLKTSKGNFEKVYYICMKYLSNIPAINKENCDISLFDACKITSAIAKCQEKNDSQFILIKGDFSGIQKFIYKTKKADALKTLKARSFYLTLLQDLCSKYMVRKLKLNITNILYSGGGNFYIIGSKDDVAEFEKARKDLSRLLLNAHGGDLYLALSEVEFTLYDFNNFQEVWKKVGNNVGKIKNKRWSEIGLEENFDKIFGPLDYGGKLNQTCSICNCISEKLDEEKRCPLCQSYIELIEGAKNKKYYIEEETEFGLIKDSYYEVKDIFRALGYNISFTKDLYKENEETVVYSINDFEDHNADGYIFKSIKLITNSLDEMVKSSEILGDNKIGVIKLDVDNLGSLFINTKSIGQVVGLSRNISMFFEGFVEKIIENNYIPKKCRQYLKTKNWKEKITIIYAGGDDTFVVGRYDEVFEFAYVFRELFRIFVDCKDKTFSAGVGMFNSDFPIIKTAEITEDFLSKGKLTEGKDKICFLGEVFTWEQYLELIKLKNLIEKIYAKTQSKSIFEKIDKSTKGFEAVFKKGNRNINYIKMYRLAYYLRDLRTKDNTILIDSLVEQYESICLSAVVKSDLRKQAMIIPFANKWAQCNCRQV
>CP020953.1|AWI05775.1|3416435_3416966_-|type-III-A-CRISPR-associated-protein-Csm2
MPISGLSAIVGRYKGGGIIVNNNSGWNNRNHQNNKFQNGKPQNRNERYDDSEKYANYFNEIILKITSLKEEYDKYINECKDYAYYLKRDGLTTSQVRKIYSDIMNAETAIDLKRLRPRLAYIIGKNERNRAIKSLINILDKGIEKLNIKDVDEEIKSLKEFMETIVAYRKYVGNDK
>CP020953.1|AWI05774.1|3415656_3416418_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MLGRLIINADLVVKTGLHIGGGSSSVEIGGIDNSVIKNHKGEPYIPGSSLKGKLRSLTELAHNKIGKNEKGENLPCNCGECFICKIYGVSASEENKSTDRLPTRIIVRDAFLKDSIAETMRRKEKDFKDLELSYTESKWENSIDRLTSKANPRLFERVPEGAIFDLEIIYTIYKEEDIENIKNLIEGFQFLEDDYLGGNGTRGYGKVKFENIRFFTKTIKDYTSKQFGDTKASVDEIDDIWIGKLKEQMIDTK
>CP020953.1|AWI05773.1|3414601_3415648_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVTLSFKNNAKLHIGEELYDYISSDKLYSMIINALSYIISVDELNGIVNLINEKVRISSAFLGLKVTKNNISNNIEFLPKPYILIKEKEISKEIEEENLINRKKYKNILWISSNSFGNMSKNYDLQEDLINYSFKNGFIIDGKYYVENEEVDEDVQKVLEDYSPIKKDMIQRNIIDRYTKESLNTYYDTFSMFSNKETDCIRIEPYLYFFLDDKEEILKDNYIQALQFISIGGKRSLGAGVVEKIGISNYKLDIYDNEKIYINFSMIYPNKKDLSKISKYSLENRNGFIFSKRSTNIKKPTLRMIKEGSIFNGKAEGEIYSLKVDGVNHDIHVYGKAFLSPFGGEK
>CP020953.1|AWI05772.1|3413519_3414602_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MSYLQKDIINLKIKTLAPIAILNDDNSKLSPYIDVIRDKDEYILLDIDKISDILISDEKYYNKYLEILRNKRSNSRDKYTIKNLLRDKNIKLEEVEAGRIKCSCNIKGNVEINTCIKSKGIPYIPGSSLKGGIRTAVLYNKIDKNDVVGKQKIFSREYVGQDIFRKNPKSVQEDIFKNLIIRDTEIDSNIQTSIYEARSINIYKDINSEKLNLDMKMLLECIDQNQTLNSQIILKGNDFKKEDLFYKINDFYEKAINKELGEISKVRFNEKDILINEYSLLLEKIRKFKNDKNGFISRVGKLKGFFSNTLTAELNDDEIYNFAIYPKKRRKKGEFPTTKWVISSDNDIRGTFGWIEVKER
>CP020953.1|AWI05771.1|3412053_3413523_-|hypothetical-protein
MKNILITNLGNRDLQIHKDNVRAIKELYNDDEKMKDILNKGRLEDDGYMVFSKIFRELTQKILEYYPKGIEYIDFPIIKSIVKKVEGDLENEKLEKIILMVTDQQDIKHNGQDTVYLGEIIERLHRDKKLEIGLNQSKDNIEIASFCTKSNPSDYDEMRKFYQEKLSKEYDSNKIFLNITGGTPAMAFGLLYNASINASCRVIPFYTKQNTNRTVKFNISETLRKDDDKKQICEFITKNDYMTANILLEKYNNKYGVLEGKYETALNMVKAAHARIQFDFESASRYIDKAQDYDSGSRAVCDRFIYFIKELQNKQKIYLLNELKNNAIYEYENGAYTDFLGRVFRSLEDIYRFILIKKNILKINENDNLKLNKAELESAGIIVKGKLNVPQMSTILEKILEKESEEYKLYIHCTKMDKLRQIRNDSVLAHGYKGVSKDKIDREIGNAIEFLGNLIVQYKKVFNIEINDDHFYDKNGEFNSHLIKLIEEI
>CP020953.1|AWI05770.1|3411359_3412052_-|hypothetical-protein
MNFYELRIKVKLSQNMDLIEVPYNIGVFINNSMLKTALLKKIHEEKFYKYVYDTFYPMEKDKLYKKDKIYYFRLRSMNIQLLNKMAIAIYNHDYNNIKAIDVDLKVQEVDKINEIYTLKPAIVTIDSKPWLKEKYSVDLLMKRLNDNLEKKLNQIGEECEVVGLGSFINGIEILNKFPMKYRYKSINLLGNKVQIKVNEDKLSQKKALIAVALGLGEKGSSLGAGFCEYK
>CP020953.1|AWI05769.1|3410471_3410942_-|N-acetyltransferase
MDITIIKGNINYIDECEAALVNSELGIRYFDKKGSARDALKEGFDKRQVYVAIDDNNNCKGFIWVILNGAFHSFPYLHIIAVNQESRGKGIGKKLLKFFEYICFKDYSKLFLVVGDFNSAARILYERIGYVQVGTIPDLYREGITENLMMKSREEN
>CP020953.1|AWI05768.1|3409611_3410055_+|hypothetical-protein
MENMVTVSKSAVGISILFILYLVTFTINLPLIIDSKLSYFNFFATVFYLLAWTGYGIYLYKKKELAFFLYALAYWILVMVASITSNILFIIIFFTPLCGLRMFFVWLNYPTNLAFEKEPYAYLFISIIFVTLSVLAIILIKSNKKLN
>CP020953.1|AWI05767.1|3408561_3408882_+|transcriptional-regulator
MEDCYVKYAMDVIGGKWKLLIIWTMYQNGVIRFNELQRKVEGISSLMLSKNLKELEKDCLIVRHQYNEIPPRVEYELSGLSEKLIVVLESLSNWGYEVYKYKNNSI
>CP020953.1|AWI05777.1|3419842_3420646_-|hypothetical-protein
MTSQIYIVFILTFTIFLIGTLAYSARVVGVKTGRIAVAAAVFNVFVLIQRTASTIQAPLLGKAVDNSISTGQTSDLLYVFRWIIFSITLATITGAILMPTFIKIFNKLVVSFSVYRSVPKLVFHAFSKSGIEQFKNSISIPKKENLYELRNFKKIPKKVVLLNMIAFSVSSISVLAALYAACLSPNLRTTCTTLSSVINSVSTIFMVIFIDPYLSMTTDDVIRGDCTELEFNRCVIFIIVGLIVGSILAQFMLIPASKLIVIIAKLI
>CP020953.1|AWI05778.1|3420791_3421313_-|amidohydrolase
MVLLVVDTQKLITNEKLYKFHMFVSNVKEIIHMARENNIEVIYVRHDDGIGNELTKGNDGFEIYEKFQPMSDEKIFDKKVNSAFKETGLLEYLMDKGEKDIIIVGLQTDYCIDATIKCGFEHGFNIIVPAYSNTTVDNKFMSAEQSYEYYNEFMWNGRYAECISFDEAIKRMK
>CP020953.1|AWI05779.1|3421453_3422881_-|MATE-family-efflux-transporter
MNYKEANTFMGSRKRNIDMCNGPLFSKVFIFALPIMAMFILQLLFNTADMVVVGHFSGSKALAAVGATGSLINLIITLFMGLSVGTTVVVAQDYGADRPDAVSRSVHTSIAVSIIGGLIVMVLGILLCKPLLELMGTPEDIIGLSVVYMKIYFISMPANMVYNFAAAILRAAGDSRRPMYYLIVTGILHVIFNLFFVIVLHMGVAGVAFATVISEYLSVMLIMICLYRCEGAIRFIPGKMRIDKCKLKDIIRIGLPAGMQGLLFSISNVLIQSAVNSFGSTMVAASAAASNVENYIGTTMNAYYNAAISFTGQNMGAKKYDRIDNIAKVCTILIFATWIIMGGMTMFFGKSLLGIYTSDPEVIRLGMLRINVMMIAFFTCGMMNVYPGLTRAMGYSILPMISTLVGACLMRILWLSTVFVWYPTEVMLFACYPVTWALAGIGQVAIFFYARRQIREQTKPSFRRRFLAILSSIVR
>CP020953.1|AWI05780.1|3423063_3424215_-|AI-2E-family-transporter
MELEKKIRSKTAILIVLAFGLYIGFNYWNNIMGIFIKVYNLIFPFILGGCIAFILNIPAGFISKKLLGCSDKGIGRIIKKHSTGISIVISFFAIVGIFVLISSIIVPNIIETAAILPKTFDNSTKAFQKWMDSNTKLSSSIVNLVNNMGIDWNNIFNKAKSIIFNGIGSMVLSTLQAATSLASATVEFILGVIFAIYILAQKKRIGIQFKKLLYAFMKKEKADSILDILKLTNITFSNFITGQCIVAAILGMMFFVVMMLLSMPYALMISVLIGFLSIIPVLGSAIGCALSVVLIVMVNPIKAGVFLLVFLLIKQIEDNLIYPKVVGESVGLPSIWVLVAITLGGKTFGVAGMIIFIPVFSVAYVLLRKEVYIKLKQKGLEIE
>CP020953.1|AWI05781.1|3424421_3424901_-|hypothetical-protein
MEFQVIRKLFNIKQNNGFSEDDICKACKKHGNLPLTLQEYYRQLGNCKHINQTQNSLCHPNKLIDTGEYLIFYKENQYVVQWAIKKTDLYKDNPPVYCSWDENEFKLESESLLDFLYAMAFFQAASWGLEYCSEDLYMISKEQAQIIKDQYKKIDYELH
>CP020953.1|AWI05782.1|3425083_3425518_-|hypothetical-protein
MSVKVDNISQIMRYNTLQNLSNINQGLFSNSSEVLFSRMLDNMIQDNNSSHVKNRSKKGKLKDSRDFNSTDSVEGLSLQPQQMARMMRISAEQSMISALSGNSMNSMYNGFLGLNGMMGGSNYTTLMFGYMLGRMSQNSHSTTK
>CP020953.1|AWI05783.1|3425634_3426414_-|ABC-transporter
MKLKVEDLCYKICDYDILNDVNIEIKEGEFVGLIGPNGCGKSTLLKNIYRVCKPYCGSVFIDDININKLSSKDAAKRMSVMIQENNIEFDVNVLDMVLLGRYAHKKLLENNSEEDLIIARQSLKDVGLYGYEDRSFFSLSGGEKQRVLIARALTQKAKLVILDEPTNHLDIGYQFQIMDILKSQKVTVFSSIHDLNIAAFYCDKIFAMDCGRITGYGTPEKVITEDLIKKLFRVNAQIQVNSTTNKISIHYISSSIDSP
>CP020953.1|AWI07785.1|3426413_3427400_-|iron-ABC-transporter-permease
MILSILIGSVNIESCWIFKIIFNNSMHQEYFQAVWPKSSESIVWNIRLPRVLLSAIVGAGLSLCGIAMQALTKNSLSDPYILGISSGASSGAVAVIMFGFFSFLTPYSITAGAFIGAVLAIIIALKFANIRGRITSTQLVLSGIAVSALFSAITNLFIFKEDNSDKVRTALFWMVGSLGGTKWSYIPYSGIMFAICTVSFFLLHKSLDALLLGDATATTLGVNTKLIKIVIIVLCTLLTGSIVSVSGVIGFVGLVIPHITRTFVGSNHKRLMPAAVLIGALFLIWSDVCARVIVSPEELPIGVVTAFIGAPFFLWILRKSSYSFGGSK
>CP020953.1|AWI05784.1|3427508_3428528_-|hypothetical-protein
MKKIKLLCLSSVLIVSLSAFAGCSSSKEKVSNDKSTEAQSSTYKPVTITVDLLRNGKGEKVTETFKAPPKKAVTLGDEFTDILLDLGLEKNIVGRTENGCKAVRTTFNDVRKNVPVLADKNLSQEKLLSVQPDFIMGWDSNFSDKKFGKEFCEKNGISIYTPKFTGDHATIQDLYTDYITLGQIFNVSSKAEARVNDMKAKVSKVQDKIKTVKNDPQKIFIYDSGENAPFTGCQGLPGDLIKIAGGKNIFDDIDKGWANVSWEEVVKRNPQVIIIMNYGTGDAEKKEKFLYSNPALKDVEAIKNKRVYPITLTDVEGSAGTAEVVNDLAKAFYPSVFNN
>CP020953.1|AWI05785.1|3429105_3429768_+|hypothetical-protein
MIDILICEEIKKICPEMTLGCIQAHVNVENSSDSLLKEINDYCEVLKKEIHIENLASSPRIMDGRTVYKKLGKAPSKYRLSSEALIRRILQGKGLYKVNNIVDINNLISLKSKFPVGSYNTKNLHSPISLVIGKEGDQYKGIGKENINIESLPVLTDSLGHFGSPTSDSERAMITNDAGEILMCIFSFSGKDNIKEYLECGKQLLERYANGEDITIKIIE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP020953_7	7.7\|3407341\|35\|CP020953\|CRISPRCasFinder,CRT,PILER-CR	3407341-3407375	35	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	556689-556723	7	0.8
CP020953_7	7.7\|3407341\|35\|CP020953\|CRISPRCasFinder,CRT,PILER-CR	3407341-3407375	35	NZ_CP028836	Enterococcus faecalis strain FC plasmid unnamed1, complete sequence	12221-12255	7	0.8
CP020953_7	7.7\|3407341\|35\|CP020953\|CRISPRCasFinder,CRT,PILER-CR	3407341-3407375	35	MK465703	Enterococcus faecium strain E505 plasmid pE505-1, complete sequence	5570-5604	7	0.8
CP020953_7	7.4\|3407144\|37\|CP020953\|CRISPRCasFinder,CRT,PILER-CR	3407144-3407180	37	MN693985	Marine virus AFVG_250M674, complete genome	18291-18327	8	0.784
CP020953_4	4.6\|3363478\|36\|CP020953\|PILER-CR,CRISPRCasFinder,CRT	3363478-3363513	36	NZ_CP053933	Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed2, complete sequence	26566-26601	9	0.75
CP020953_4	4.6\|3363478\|36\|CP020953\|PILER-CR,CRISPRCasFinder,CRT	3363478-3363513	36	NZ_CP009718	Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence	558-593	9	0.75
CP020953_4	4.6\|3363478\|36\|CP020953\|PILER-CR,CRISPRCasFinder,CRT	3363478-3363513	36	NZ_CP053936	Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed4, complete sequence	26579-26614	9	0.75
CP020953_7	7.2\|3407011\|37\|CP020953\|CRISPRCasFinder,CRT,PILER-CR	3407011-3407047	37	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	124387-124423	11	0.703

1. spacer 7.7|3407341|35|CP020953|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.8

--ggattagttttaaaagatattttagaaagttaagt	CRISPR spacer
tttcatta--tttaaaaaatattttagaaatttaatt	Protospacer
    ****  *******.************ **** *

2. spacer 7.7|3407341|35|CP020953|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028836 (Enterococcus faecalis strain FC plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

ggatta--gttttaaaagatattttagaaagttaagt	CRISPR spacer
--attaccgaattaaaagatatttttgaaagtaaagg	Protospacer
  ****  *  ************** ****** ***

3. spacer 7.7|3407341|35|CP020953|CRISPRCasFinder,CRT,PILER-CR matches to MK465703 (Enterococcus faecium strain E505 plasmid pE505-1, complete sequence) position: , mismatch: 7, identity: 0.8

ggatta--gttttaaaagatattttagaaagttaagt	CRISPR spacer
--attaccgaattaaaagatatttttgaaagtaaagg	Protospacer
  ****  *  ************** ****** ***

4. spacer 7.4|3407144|37|CP020953|CRISPRCasFinder,CRT,PILER-CR matches to MN693985 (Marine virus AFVG_250M674, complete genome) position: , mismatch: 8, identity: 0.784

ctatggcacaaactaaaactgttcaagaagcagcagc	CRISPR spacer
catcgagtcaaactaaaaatgttcaagaagcatcagc	Protospacer
*  .*.  ********** ************* ****

5. spacer 4.6|3363478|36|CP020953|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053933 (Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.75

aaatgcaatatatacaggtaaaaaatcggcaactgg--	CRISPR spacer
aaatgcaatatataaatgtaaaaaat--gtatttattt	Protospacer
************** * *********  *.* .*.

6. spacer 4.6|3363478|36|CP020953|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009718 (Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence) position: , mismatch: 9, identity: 0.75

aaatgcaatatatacaggtaaaaaatcggcaactgg--	CRISPR spacer
aaatgcaatatataaatgtaaaaaat--gtatttattt	Protospacer
************** * *********  *.* .*.

7. spacer 4.6|3363478|36|CP020953|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053936 (Bacillus thuringiensis strain FDAARGOS_794 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.75

aaatgcaatatatacaggtaaaaaatcggcaactgg--	CRISPR spacer
aaatgcaatatataaatgtaaaaaat--gtatttattt	Protospacer
************** * *********  *.* .*.

8. spacer 7.2|3407011|37|CP020953|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 11, identity: 0.703

ttactttttttattatttgatatgaaccatttacatc	CRISPR spacer
agtatatttttattatttgatattgaccattttattt	Protospacer
    * ***************** .*******   *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

524592 : 530454

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI03357.1\|524592_525072_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-27	46.2
AWI03358.1\|525073_525784_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SE76	Cyanophage	4.9e-44	43.7
AWI03359.1\|525832_527272_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.1e-55	34.3
AWI03360.1\|527332_528328_+	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	4.0e-68	45.6
AWI03361.1\|528315_528927_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.1e-20	35.6
AWI03362.1\|528951_530454_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.6e-63	44.6

DBSCAN-SWA_2

1205720 : 1288880

Clostridium_phage(33.33%)

capsid,protease,tail,tRNA,portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI03996.1\|1205720_1206731_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
AWI03997.1\|1206846_1207896_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA
AWI03998.1\|1208115_1208580_+	ribosome maturation factor	NA	NA	NA	NA
AWI03999.1\|1208597_1209704_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
AWI04000.1\|1209727_1209997_+	nucleic acid-binding protein	NA	NA	NA	NA
AWI04001.1\|1209986_1210301_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA
AWI04002.1\|1210318_1212406_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	3.7e-23	25.6
AWI04003.1\|1212480_1212846_+	ribosome-binding factor A	NA	NA	NA	NA
AWI04004.1\|1212832_1213792_+	DHH family phosphoesterase	G3MA01	Bacillus_virus	8.8e-28	31.0
AWI04005.1\|1213813_1214689_+\|tRNA	tRNA pseudouridine(55) synthase	NA	NA	NA	NA
AWI04006.1\|1214695_1215634_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
AWI04007.1\|1215749_1216013_+	30S ribosomal protein S15	NA	NA	NA	NA
AWI04008.1\|1216167_1218282_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
AWI04009.1\|1218358_1219657_+	peptidase M16	G3MBJ8	Bacillus_virus	3.1e-44	30.6
AWI04010.1\|1219725_1219998_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA
AWI04011.1\|1220052_1221258_+	aspartate kinase	NA	NA	NA	NA
AWI04012.1\|1221322_1221994_+\|protease	Clp protease	NA	NA	NA	NA
AWI04013.1\|1222104_1224369_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.9e-89	49.4
AWI04014.1\|1224465_1225803_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AWI04015.1\|1225786_1226374_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AWI04016.1\|1226680_1227757_+	DNA recombination/repair protein RecA	A0A0S2MVG1	Bacillus_phage	2.4e-122	63.7
AWI04017.1\|1228020_1229562_+	ribonuclease Y	NA	NA	NA	NA
AWI04018.1\|1229702_1229963_+	stage V sporulation protein S	J9PTX7	Bacillus_phage	9.3e-09	41.0
AWI04019.1\|1230102_1230969_+	decaprenyl-phosphate phosphoribosyltransferase	NA	NA	NA	NA
AWI04020.1\|1231007_1232261_+	hypothetical protein	NA	NA	NA	NA
AWI04021.1\|1232257_1232614_+	transporter	NA	NA	NA	NA
AWI04022.1\|1232826_1234020_+	aspartate aminotransferase	NA	NA	NA	NA
AWI04023.1\|1234189_1234450_+	HPr family phosphocarrier protein	NA	NA	NA	NA
AWI04024.1\|1234479_1234719_-	DUF378 domain-containing protein	NA	NA	NA	NA
AWI04025.1\|1234922_1236359_+	adenylosuccinate lyase	NA	NA	NA	NA
AWI04026.1\|1236518_1236779_+	hypothetical protein	NA	NA	NA	NA
AWI04027.1\|1237025_1239113_+	nitrate reductase	NA	NA	NA	NA
AWI04028.1\|1239116_1239533_+	nitrate reductase	NA	NA	NA	NA
AWI04029.1\|1239553_1240780_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.4e-07	22.5
AWI04030.1\|1241073_1242384_+	MFS transporter	NA	NA	NA	NA
AWI04031.1\|1242622_1243393_+	nitrite transporter NirC	NA	NA	NA	NA
AWI04032.1\|1243437_1244439_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
AWI04033.1\|1244439_1245231_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
AWI04034.1\|1245244_1246198_+	sulfite reductase subunit C	NA	NA	NA	NA
AWI04035.1\|1246349_1247042_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
AWI04036.1\|1247341_1248805_+	repressor LexA	R9VW28	Paenibacillus_phage	6.2e-09	36.8
AWI04037.1\|1248862_1249162_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.7e-12	42.4
AWI04038.1\|1249164_1251384_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.4e-153	40.1
AWI04039.1\|1251621_1252860_+	flagellar hook protein	NA	NA	NA	NA
AWI04040.1\|1252901_1253408_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.0e-15	38.2
AWI04041.1\|1253805_1255263_+	gamma-aminobutyrate permease	NA	NA	NA	NA
AWI04042.1\|1255423_1255870_+	deoxyuridine 5'-triphosphate nucleotidohydrolase	A0A1L2BX65	Bacteriophage	2.5e-33	50.0
AWI07718.1\|1255912_1256728_-	hypothetical protein	NA	NA	NA	NA
AWI04043.1\|1257199_1258114_-	hypothetical protein	NA	NA	NA	NA
AWI04044.1\|1258103_1258625_-	RNA polymerase subunit sigma	NA	NA	NA	NA
AWI07719.1\|1258878_1259391_-	hypothetical protein	NA	NA	NA	NA
AWI04045.1\|1259785_1260556_-	histidinol-phosphatase	NA	NA	NA	NA
AWI04046.1\|1260963_1261743_-	peptidoglycan-binding protein	A0A141HRV8	Bacillus_phage	2.5e-17	45.6
AWI04047.1\|1262036_1262921_-	fatty acid-binding protein DegV	NA	NA	NA	NA
AWI04048.1\|1264937_1265378_-	ImmA/IrrE family metallo-endopeptidase	I3VYZ2	Thermoanaerobacterium_phage	3.4e-19	46.9
AWI04049.1\|1265392_1265806_-	transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	1.5e-08	37.2
AWI07720.1\|1266134_1266653_+	hypothetical protein	A0A0A7RVX8	Clostridium_phage	4.7e-28	62.2
AWI04050.1\|1266871_1267051_+	hypothetical protein	A0A0A7RUG6	Clostridium_phage	1.1e-08	56.9
AWI04051.1\|1267092_1267872_+\|terminase	terminase	A0A1L2JY44	Aeribacillus_phage	2.1e-43	41.0
AWI04052.1\|1267849_1269112_+\|terminase	terminase	A0A1L2JY46	Aeribacillus_phage	5.0e-156	65.3
AWI04053.1\|1269125_1270532_+\|portal	phage portal protein	A0A0A7S074	Clostridium_phage	1.1e-103	42.3
AWI04054.1\|1270571_1271126_+	phage scaffold protein	A0A0A7RW68	Clostridium_phage	3.5e-21	36.5
AWI04055.1\|1271141_1271468_+	hypothetical protein	A0A1X9IGG8	Lactococcus_phage	2.4e-09	39.3
AWI04056.1\|1271481_1272501_+\|capsid	capsid protein	S5MA55	Brevibacillus_phage	1.7e-74	45.0
AWI04057.1\|1272537_1272876_+	hypothetical protein	NA	NA	NA	NA
AWI04058.1\|1272877_1273228_+	hypothetical protein	A0A1V0DZW2	Clostridioides_phage	3.1e-07	31.9
AWI04059.1\|1273227_1273680_+	hypothetical protein	NA	NA	NA	NA
AWI04060.1\|1273676_1274120_+	hypothetical protein	A0A0A7RTI2	Clostridium_phage	6.1e-08	31.3
AWI07721.1\|1274202_1275291_+\|tail	phage tail sheath protein	A0A0A7S0D2	Clostridium_phage	2.0e-73	42.3
AWI04061.1\|1275294_1275762_+	hypothetical protein	A0A0A7RVT1	Clostridium_phage	1.1e-28	46.1
AWI04062.1\|1275858_1276278_+	hypothetical protein	NA	NA	NA	NA
AWI04063.1\|1276499_1279652_+	hypothetical protein	A0A1L2JY60	Aeribacillus_phage	1.3e-32	39.8
AWI04064.1\|1279728_1281102_+	hypothetical protein	A0A1V0DZX6	Clostridioides_phage	4.1e-18	45.7
AWI04065.1\|1281116_1281431_+	hypothetical protein	NA	NA	NA	NA
AWI04066.1\|1281442_1281868_+	hypothetical protein	A0A1V0DZX0	Clostridioides_phage	8.1e-18	36.4
AWI04067.1\|1281886_1282318_+	hypothetical protein	A0A0A7S0E2	Clostridium_phage	1.0e-23	41.0
AWI04068.1\|1282310_1283369_+	hypothetical protein	A0A0A7RUN3	Clostridium_phage	1.1e-47	34.6
AWI04069.1\|1283361_1283985_+	hypothetical protein	A0A2H4J1P4	uncultured_Caudovirales_phage	7.4e-28	33.5
AWI04070.1\|1283987_1286321_+	hypothetical protein	A0A0A7RTP0	Clostridium_phage	9.2e-55	64.4
AWI04071.1\|1286320_1286815_+	hypothetical protein	NA	NA	NA	NA
AWI04072.1\|1287415_1288132_+	hypothetical protein	A0A0A7RW14	Clostridium_phage	1.3e-23	34.0
AWI07722.1\|1288685_1288880_+	hypothetical protein	A0A0A7RU02	Clostridium_phage	1.0e-23	87.3

DBSCAN-SWA_3

1355908 : 1373082

Clostridium_phage(80.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI04128.1\|1355908_1356370_-	hypothetical protein	A0A0A7RVV2	Clostridium_phage	1.5e-46	58.2
AWI04129.1\|1356398_1356725_-	transcriptional regulator	A0A0A7RTU8	Clostridium_phage	5.8e-24	73.3
AWI04130.1\|1356902_1357106_+	hypothetical protein	NA	NA	NA	NA
AWI04131.1\|1357327_1357528_+	hypothetical protein	NA	NA	NA	NA
AWI04132.1\|1357637_1358102_+	hypothetical protein	A0A090EUN5	Clostridium_phage	2.1e-19	38.2
AWI04133.1\|1358661_1359555_+	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	4.9e-57	43.3
AWI04134.1\|1359592_1360045_+	hypothetical protein	A0A0A8WDZ7	Clostridium_phage	1.9e-12	34.0
AWI04135.1\|1359962_1360217_+	hypothetical protein	A0A0A7RW80	Clostridium_phage	6.1e-13	48.6
AWI04136.1\|1360257_1362909_+\|tail	phage tail tape measure protein	Q9G097	Lactococcus_phage	4.7e-71	36.1
AWI04137.1\|1362921_1363359_+	hypothetical protein	NA	NA	NA	NA
AWI04138.1\|1363348_1364437_+	hypothetical protein	A0A0A7RU03	Clostridium_phage	5.6e-39	29.7
AWI04139.1\|1364436_1364772_+	hypothetical protein	A0A0A7S0S4	Clostridium_phage	5.2e-12	53.0
AWI04140.1\|1364779_1365391_+	hypothetical protein	A0A0A7RW86	Clostridium_phage	1.7e-29	41.5
AWI04141.1\|1365393_1366467_+	hypothetical protein	A0A172JHW1	Bacillus_phage	2.9e-11	28.3
AWI04142.1\|1366481_1368020_+	hypothetical protein	A0A0A7RU28	Clostridium_phage	8.4e-89	65.3
AWI04143.1\|1368032_1370309_+	hypothetical protein	A0A0A7RU09	Clostridium_phage	1.7e-29	34.8
AWI04144.1\|1370328_1370574_+	hypothetical protein	NA	NA	NA	NA
AWI04145.1\|1370585_1371578_+	hypothetical protein	A0A0A7RW91	Clostridium_phage	1.8e-84	48.8
AWI04146.1\|1371597_1372182_+	hypothetical protein	NA	NA	NA	NA
AWI04147.1\|1372197_1373082_+	hypothetical protein	A0A223LC33	Bacillus_phage	7.0e-56	44.4

DBSCAN-SWA_4

2625601 : 2633773

Klosneuvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI05137.1\|2625601_2627044_+	RNA helicase	A0A1V0SIR5	Klosneuvirus	3.2e-66	39.3
AWI05138.1\|2627061_2628210_+	helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.1e-48	29.9
AWI05139.1\|2628470_2628665_+	transcriptional regulator	A0A1V0E021	Clostridioides_phage	2.5e-06	45.2
AWI05140.1\|2628667_2629138_+	hypothetical protein	NA	NA	NA	NA
AWI07760.1\|2629416_2630124_+	lantibiotic ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-56	48.4
AWI05141.1\|2630129_2630891_+	multidrug ABC transporter permease	NA	NA	NA	NA
AWI05142.1\|2630892_2631663_+	antibiotic ABC transporter permease	NA	NA	NA	NA
AWI05143.1\|2631746_2632406_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	5.3e-24	30.4
AWI05144.1\|2632396_2633773_+	two-component sensor histidine kinase	A0A2K9L5I4	Tupanvirus	5.9e-09	23.6

DBSCAN-SWA_5

5626185 : 5682877

Clostridium_phage(37.5%)

transposase,protease,tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI07616.1\|5626185_5627193_+\|coat	spore coat protein	NA	NA	NA	NA
AWI07617.1\|5627219_5627423_+	hypothetical protein	NA	NA	NA	NA
AWI07618.1\|5627444_5628206_+\|coat	spore coat protein	NA	NA	NA	NA
AWI07619.1\|5628218_5629235_+\|coat	spore coat protein	NA	NA	NA	NA
AWI07620.1\|5629293_5630418_-	glycosyl transferase	NA	NA	NA	NA
AWI07621.1\|5630532_5631549_+\|coat	spore coat protein S	NA	NA	NA	NA
AWI07622.1\|5631717_5632584_+	sporulation peptidase YabG	NA	NA	NA	NA
AWI07623.1\|5632787_5633024_+	hypothetical protein	NA	NA	NA	NA
AWI07624.1\|5633391_5634951_+	peptidase M23	NA	NA	NA	NA
AWI07850.1\|5635448_5636264_+	cyanophycinase	NA	NA	NA	NA
AWI07625.1\|5636289_5638905_+	cyanophycin synthetase	NA	NA	NA	NA
AWI07626.1\|5639033_5639876_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
AWI07627.1\|5640019_5640214_+	hypothetical protein	NA	NA	NA	NA
AWI07628.1\|5640262_5641723_+	spore germination protein	NA	NA	NA	NA
AWI07629.1\|5644107_5644758_+	stage II sporulation protein R	NA	NA	NA	NA
AWI07630.1\|5644770_5646012_-	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA
AWI07631.1\|5646335_5647700_+	germination protein YpeB	NA	NA	NA	NA
AWI07632.1\|5647858_5648842_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
AWI07633.1\|5648895_5649315_+	hypothetical protein	NA	NA	NA	NA
AWI07634.1\|5649418_5649727_+	ribose-5-phosphate isomerase	NA	NA	NA	NA
AWI07635.1\|5650031_5651645_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.4e-155	52.2
AWI07636.1\|5651955_5652297_+	hypothetical protein	NA	NA	NA	NA
AWI07637.1\|5652474_5653971_+	transcription termination factor Rho	NA	NA	NA	NA
AWI07638.1\|5654030_5654249_-	50S ribosomal protein L31	NA	NA	NA	NA
AWI07639.1\|5654436_5655039_+	thymidine kinase	A0A249XXF6	Clostridium_phage	2.1e-51	52.7
AWI07640.1\|5655038_5655989_+	hypothetical protein	NA	NA	NA	NA
AWI07641.1\|5656041_5656914_+	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA
AWI07642.1\|5656980_5658057_+	peptide chain release factor 1	NA	NA	NA	NA
AWI07643.1\|5658095_5658710_+	hypothetical protein	NA	NA	NA	NA
AWI07851.1\|5658850_5659513_+	ZIP family metal transporter	NA	NA	NA	NA
AWI07644.1\|5659728_5660781_+	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	5.2e-50	38.0
AWI07645.1\|5660804_5661263_+	protein tyrosine phosphatase	NA	NA	NA	NA
AWI07646.1\|5661344_5661794_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
AWI07647.1\|5661808_5662438_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AWI07648.1\|5662627_5663116_+	cytidine deaminase	A0A2H4PI75	Streptomyces_phage	2.8e-14	36.5
AWI07649.1\|5663195_5664230_+	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
AWI07650.1\|5664248_5665397_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	5.2e-27	28.3
AWI07651.1\|5666106_5666469_+	ATP synthase subunit I	NA	NA	NA	NA
AWI07652.1\|5666485_5667169_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
AWI07653.1\|5667202_5667451_+	ATP synthase F0 subunit C	NA	NA	NA	NA
AWI07654.1\|5667505_5667985_+	ATP synthase F0 subunit B	NA	NA	NA	NA
AWI07655.1\|5667987_5668527_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
AWI07656.1\|5668537_5670052_+	ATP synthase subunit alpha	NA	NA	NA	NA
AWI07657.1\|5670074_5670926_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
AWI07658.1\|5670939_5672340_+	ATP synthase subunit beta	NA	NA	NA	NA
AWI07659.1\|5672411_5672810_+	ATP synthase F1 subunit epsilon	NA	NA	NA	NA
AWI07660.1\|5673067_5673760_+	hypothetical protein	NA	NA	NA	NA
AWI07661.1\|5673784_5675044_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
AWI07662.1\|5675306_5676788_-	hypothetical protein	NA	NA	NA	NA
AWI07663.1\|5676950_5677994_+	stage II sporulation protein D	Q2XU88	Pseudomonas_phage	1.4e-34	36.8
AWI07664.1\|5678172_5679399_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AWI07665.1\|5679417_5679744_+	hypothetical protein	NA	NA	NA	NA
AWI07666.1\|5679966_5680692_+	peptidase	NA	NA	NA	NA
AWI07667.1\|5680800_5681055_+	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	5.7e-19	60.0
AWI07668.1\|5681157_5682189_+	rod shape-determining protein	NA	NA	NA	NA
AWI07669.1\|5682337_5682877_-\|protease	spore protease YyaC	A0A0A8WIQ6	Clostridium_phage	3.2e-27	39.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP020953

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection