CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029188	Streptomyces sp. HNM0039 chromosome, complete genome	26 crisprs	WYL,cas4,csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,Cas9_archaeal,DinG	6	39	1	0

1. CP029188

CRISPR-Cas detection and classification

Crispr_ID: CP029188_1

• CRISPR_ID: CP029188_1
• CRISPR_location: 579153-579261
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of CP029188_1

Consensus_repeat	Method
GCACCGGCCCGCCGGTCCGTTCGTC	CRISPRCasFinder

spacers of CP029188_1

>1.1|579178|19|CP029188|CRISPRCasFinder
CGCATGGCCGCCCGTCTGC
>1.2|579222|15|CP029188|CRISPRCasFinder
CGTGCGTCCTCCGAC

CRISPR arrays and Neighbor proteins around CP029188_1

CRISPR arrays

The CRISPR arrays of CP029188_1

>merge|CP029188|1|579153-579261|CRISPRCasFinder
GCACCGGCCCGCCGGTCCGTTCGTCCGCATGGCCGCCCGTCTGCCCACCGCCCCGCCTGCCCGCCGGCCCGTGCGTCCTCCGACGCCCCGGCCCGCCGGTCCGTTCGTC

>CP029188|1|1|579153-579261|CRISPRCasFinder
GCACCGGCCCGCCGGTCCGTTCGTC	CGCATGGCCGCCCGTCTGC
CCACCGCCCCGCCTGCCCGCCGGCC	CGTGCGTCCTCCGAC
GCCCCGGCCCGCCGGTCCGTTCGTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI27781.1|572372_573134_-|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl|CDD|212491
CP029188.1|AWI27786.1|576988_577450_+|dehydratase	unknown	unknown	gnl|CDD|239534
CP029188.1|AWI27796.1|589246_589996_+|GntR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225099
CP029188.1|AWI27791.1|581461_582544_-|alcohol-dehydrogenase	unknown	unknown	gnl|CDD|176240
CP029188.1|AWI27787.1|577583_578207_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380061
CP029188.1|AWI27797.1|589992_591189_+|DNA-methyltransferase	unknown	unknown	gnl|CDD|380119
CP029188.1|AWI27779.1|570057_570651_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380061
CP029188.1|AWI27783.1|574842_575085_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI27784.1|575298_575880_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI27785.1|576124_576838_+|DUF1275-domain-containing-protein	unknown	unknown	gnl|CDD|377734
CP029188.1|AWI27780.1|570720_572391_-|acyl-CoA-synthetase	unknown	unknown	gnl|CDD|341259
CP029188.1|AWI27793.1|584471_584795_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI27792.1|582561_583953_-|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|143456
CP029188.1|AWI27778.1|568492_569707_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173844
CP029188.1|AWI27790.1|580778_581360_+|hypothetical-protein	unknown	unknown	gnl|CDD|377662
CP029188.1|AWI27782.1|573302_574553_+|DUF1343-domain-containing-protein	unknown	unknown	gnl|CDD|377768
CP029188.1|AWI27795.1|587680_589009_+|homogentisate-1,2-dioxygenase	unknown	unknown	gnl|CDD|235421
CP029188.1|AWI27798.1|591469_592693_+|CoA-transferase	unknown	unknown	gnl|CDD|224717
CP029188.1|AWI27789.1|579300_580635_-|MFS-transporter	unknown	unknown	gnl|CDD|340927
CP029188.1|AWI27794.1|584988_587229_-|molybdopterin-binding-oxidoreductase	unknown	unknown	gnl|CDD|239163

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI27781.1|572372_573134_-|SDR-family-NAD(P)-dependent-oxidoreductase	gnl|CDD|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.9085e-41
CP029188.1|AWI27786.1|576988_577450_+|dehydratase	gnl|CDD|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	8.30846e-95
CP029188.1|AWI27796.1|589246_589996_+|GntR-family-transcriptional-regulator	gnl|CDD|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	8.89069e-44
CP029188.1|AWI27791.1|581461_582544_-|alcohol-dehydrogenase	gnl|CDD|176240	cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	8.61167e-153
CP029188.1|AWI27787.1|577583_578207_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	2.26144e-38
CP029188.1|AWI27779.1|570057_570651_-|TetR-family-transcriptional-regulator	gnl|CDD|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	5.68347e-31
CP029188.1|AWI27797.1|589992_591189_+|DNA-methyltransferase	gnl|CDD|380119	pfam18135, Type_ISP_C, Type ISP C-terminal specificity domain. This is the C-terminal domain of Type ISP restriction-modification enzyme LLaBIII present in Lactococcus lactis subsp. cremoris. Type ISP restriction-modification (RM) enzymes provide a potent defence against infection by foreign and bacteriophage DNA. This domain interacts extensively with DNA and is known as the target recognition domain (TRD). TRD works by recognising 6/7 base pairs of asymmetric sequence.	1.27848e-54
CP029188.1|AWI27795.1|587680_589009_+|homogentisate-1,2-dioxygenase	gnl|CDD|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0
CP029188.1|AWI27785.1|576124_576838_+|DUF1275-domain-containing-protein	gnl|CDD|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	8.88412e-24
CP029188.1|AWI27780.1|570720_572391_-|acyl-CoA-synthetase	gnl|CDD|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	1.41441e-177
CP029188.1|AWI27792.1|582561_583953_-|aldehyde-dehydrogenase-family-protein	gnl|CDD|143456	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.	0
CP029188.1|AWI27778.1|568492_569707_+|acyl-CoA-dehydrogenase	gnl|CDD|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	0
CP029188.1|AWI27790.1|580778_581360_+|hypothetical-protein	gnl|CDD|377662	pfam06475, Glycolipid_bind, Putative glycolipid-binding. This family has a novel fold known as a spiral beta-roll, consisting of a 15-stranded beta sheet wrapped around a single alpha helix. It forms dimers. It has some structural similarity to the E. coli lipoprotein localization factors LolA and LolB. Its structure suggests that it may have a role in glycolipid binding. Its genomic context supports a role in glycolipid metabolism.	8.04679e-51
CP029188.1|AWI27782.1|573302_574553_+|DUF1343-domain-containing-protein	gnl|CDD|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
CP029188.1|AWI27798.1|591469_592693_+|CoA-transferase	gnl|CDD|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	6.95041e-129
CP029188.1|AWI27789.1|579300_580635_-|MFS-transporter	gnl|CDD|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.88788e-151
CP029188.1|AWI27794.1|584988_587229_-|molybdopterin-binding-oxidoreductase	gnl|CDD|239163	cd02762, MopB_1, The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0

Protein sequences

>CP029188.1|AWI27787.1|577583_578207_-|TetR/AcrR-family-transcriptional-regulator
MTAAQDTTAEDAPWGEVAPDAARKLLVAAVEAFAERGYHATTTRDIAGRAGMSPAALYIHYKTKEELLHRISRIGHDKALEVLSAASGRGGTPGERLAEAVRSFVRWHAGRHDTARVVQYELDALSEEHRAEIMALRRRSDAVVREILRDGVESGEFDVPDVPGTTVAVLSLCIDVARWFNVQGRRTPEEVGELYADLVLRMVSAGK
>CP029188.1|AWI27786.1|576988_577450_+|dehydratase
MAEPRIFTSAEELTAGVGEELGPSDWLEVDQKRIDLFAEATGDHQWIHVDPERAAAGPFGTTVAHGYLTLSLLPALVPQIMRVEGMKMGINYGTNKVRFPAPVPVGSRLRATAVLRSVEQIGGGVQVTAAVTVEREGGEKPVCVAESVSRYFF
>CP029188.1|AWI27785.1|576124_576838_+|DUF1275-domain-containing-protein
MQAKRVTFLTWAMMALTVTTGMVEAVSFLALGPVFTAVQTGTMLLLSFALVGVAGLAVVPCLASVAGFTVGAALSARFESRSRLKGHRWFREALIAESLVLAVAASVAWGIERPGEPLTAHHYTAAGLVALAMGIRNVSTLRAGVRGMPVTVTTRALAALIGGSPLAVDTRLAPGAGDQVRRAVSVLAMFAGGLLGAWLLHDGRIGAGAVLLCTAVLGVAVALAFTLVPRERTSEAD
>CP029188.1|AWI27784.1|575298_575880_+|hypothetical-protein
MRDPRCDPALRRYSLRKCLERFAPYGHRATWDHLCTRHGIDPDDRDPDPARLVAALAELEEARAVWLAYERDFAERRKREKHDGLRRPGSFDDWHRRTWGGNGIARCDDPRVHPTDPLADVLRRLITALEAAPSAVCPVCADPGIVWRQDLDQEPWVGPVCSGCGIVVPQPVLTREALWAAKRAPVGALASVA
>CP029188.1|AWI27783.1|574842_575085_-|hypothetical-protein
MTALRRAAPGPRILLPASSRPAPGQVPARSYRETHRAARTDRPPRGTAEGARFRRHAVPGDPVRGCRHGPAGRGDERERP
>CP029188.1|AWI27782.1|573302_574553_+|DUF1343-domain-containing-protein
MSLSRRGLLAAGGAAGALAASAAAATPAAAHGGRSRVRTGFERLAADGYRLLSGERVGVVTNPTGITRDARHLVDVMHADDRVDLVAVFGPEHGFRGTAQAGGSEGRYDDPATGLPVYDTYLKSGQPLADIFTASGVDTVVFDIQDAGARFYTYIWTMYDCMAAAVLAGKRFVVLDRPNPVTGRAAHGPVLDKAFATFVGREPIAQAHGMTVAELALLFNAEFLAAPAELDVVRMSGWRRDDFHDATGLPWVPPSPNMPTPDTALVYSGTCLFEGTNLSEGRGTTRPFELLGAEGIDRVWAEAANALGLPGVRFREAYFTPTFSKFQGRTVGGVQLHVHDRQAFDPVRTGIGLLMTAKRSWGGFAWRPDHWIDKLTGSTRVRTMIDAGAGTDEVVGAWQQDLAAFRALRREYLLYR
>CP029188.1|AWI27781.1|572372_573134_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSTVQGANVVVTGAGGGIGAALARRFAAEGARVAVNDIDPGRTRAVAEEIGALAVPGDASAVVEEAREALGGTVDVYCANAGLASPGDAFADEDVWASAWDVNVMAHVRAVRTLLPGWLERGSGRFVSTVSAAGLLTMIGAAPYSVTKHGALAFAEWLSLTYRHRGLKVHAVCPQGVRTDMLAAAGSAGELVLAPGAIEPEDVADALFEGIEADRFLILPHPEVAGYHQARAGDPDRWLGTMNHIQQKWEAAR
>CP029188.1|AWI27780.1|570720_572391_-|acyl-CoA-synthetase
MGGRPVSASRYAARPWLSQLTAAQRAPVHPPASVVHSFRAAARRAPDRTALAYFDGRLSYREADALSDSVAGRLAARGVARGDRVALMLQNTPHFVLALLGAWKAGATVVPLNPMYKSAEVTHALDDSGATVLICSDRAWETQLRGTAAATPVRFAVTACELDLQTRDDSRVLGFERLPPPGDTDDLVAVARAGYAAPEGRDPAAGDVALISYTSGTSGRPKGAMNLHGGITYNAERQRTGHPVPEGACYFALAPLFHITGLVCELAACAANAGTLALAYRFEAGVVLDAFLEHRPAYTVGPSTAFMALAAHPAAGPDHFASFAVVSSGGAPVPPALVERFRAEFGPYIRNGYGLTECTAPCASVPPGREAPVDPASGALSVGLPGADTVVRILDDQGREVPFGEHGEIAVRGPQVVPGYWRLPEATAAGFPDGELRTGDIGFMDPDGWLYVVDRKKDMINASGFKVWPREVEDVLHTHPAVREAAVVGVPHAYRGETVKAYVSLRPGTAVGPDELAGYCADRLAAYKYPRQVEILEELPKTTSGKILRRELRSRA
>CP029188.1|AWI27779.1|570057_570651_-|TetR-family-transcriptional-regulator
MARTTDGNGTPVPQRLLATATRLFAEQGYDRTSVQEIVEAAGVTKGALYHYFGSKEDLLQEVYSRVLRLQQERLDAFAEADAPVERRLRSAAADVVVTTIENLDDASIFFRSMHHLSPEKNKQVRAERRRYHERFRALIEEGQQSGVFSAATPADLVVDYHFGSVHHLSTWYRPDGPLSPQQVADHLADLLLRALRP
>CP029188.1|AWI27778.1|568492_569707_+|acyl-CoA-dehydrogenase
MDFAFDARTEELRARLLAFMDEHVYPAEPVEQAQRAELASPWDTPAVVAELQAEARRRGLWNLFLPDSEHGAGLTNLQYAPLAEITGRSPHLAPIALNCAAPDTGNMEVLAQFGTEEQKKQWLEPLLAADIRSAFAMTEPDVASSDATNIETRIERRGDEYVVNGRKWYISGAMNPDCRIFIVMGKTDPEGADIRRQQSMLLVPRDTPGVEVRRAMRVYGFEDHSHGGHAEVVFQDARVPVSNLVGEEGGGFAIAQARLGPGRIHHCMRLIGMAERAIELMCRRALSRTAFGKPIAQQGVVQNWIADARVAVEQMRLLVLKTAWLMDTVGNRGAHTEIQAIKIATPRAVVDILDKAVQVHGAGGVSQDFPLAELWAGARTLQLADGPDEVHQRSLARRELKQYR
>CP029188.1|AWI27789.1|579300_580635_-|MFS-transporter
MDTAPPSPLAGDPQLTAPTDRHRRRVAGAAALASAVEWYDYFVFGIAAALVLGDLYFPAGSASAGVLAAFATFAVGFLARPVGGIIAGQFGDKHGRKPMLVLALTLMGLATTGIGLLPTYESIGIAAPLLLVLLRVMQGLAVGAQWGGAMLMATEYAPEGKRGLYGSLVQLGVPIGVVTANTVFLAAGALTDDAAFASWGWRVPFLVGFLVLGLAWYIHARVEETPEFREAERALAEKEKSEPRSPLRTILRRHLGTVFLAGGSFAVNTATFYIIITGVLDYSTRELGMEREAVLTVSLCVSLTQLALIPAAAALSDRVGRLRIYAAGAVGLLAWAFPLFLLIDTASLLWLAVGTFVTSCFLSIMYGPQAALFAELFTPEMRYTGASLGYQIAAVFGGGLAPFIMVLLLEATGTSMAVSAYITVLAAVALGSIRVLAKRAAARE
>CP029188.1|AWI27790.1|580778_581360_+|hypothetical-protein
MEFTHPPAGAAWLHQDSRQGFEVAFFRVTDDGLRIDGHAAVAEDGDAFAVEYEIELDPDWRTRTARVRGRSPSGSRTVVLETDGSGHWAVDGKRAPYLEGCLDVDLEASALTNALPVRRLSLPQGARASAPAAWVRARDLTVERLEQTYTRSTDRGTHTCHDYAAPAYGFSSRIVSDESGLPLEYPGIAVRAL
>CP029188.1|AWI27791.1|581461_582544_-|alcohol-dehydrogenase
MVRAAVLPAVGSPLEITRIELPEPGPGRVRVRLTAAGVCHSDLSLSNGTMQVPVPAVLGHEGAGTVVSVGEGVTHVAPGDGVVLNWAPSCGHCHHCSLGEVWLCAGALKGAGAVHAVTEDGTQLHPGLNVAAFAEETVVAANCVLPLPEGVPPAEAALLGCAVLTGYGAVHHSARVREGETVVVLGVGGVGLATLQAARIAGASRIIAVDVSPGKEGLARAAGATDFVVASDATAREVRALTGGLGADVAVECVGRAVTIRAAWDSTRRGGRTTVVGIGGKDQQVTFHALELFHWGRTLSGCVYGNSDPARDLPVLAEHIRAGRLDLSALVTERIGLDGIPAAFENMVAGKGGRALVVFP
>CP029188.1|AWI27792.1|582561_583953_-|aldehyde-dehydrogenase-family-protein
MKAHDGMYIGGVWRPALGAGTIAVVDPADEQVIAHVPAGSPEDVDAAVVAARDAFPGWAATAPADRAARIAALRDVLAARKDEVAATVTAELGAPPRLAEAVHAGLPVLVAGSYAELAASYAFEETVGNSTVLHEPVGVVGAITPWNYPLHQIVAKVAPALAAGCTVVLKPAEDTPLTARLFAEAVHESGLPGGVFNLVTGLGPVAGQALAEHPGVDLVSFTGSTAVGRRIGATAGGAVKRVALELGGKSANVILPGADLPRAVNAGIANVMSNSGQTCSAWTRMLVHRDRYEEAVALAAEAAAKYVPGDRLGPLVSARQRDRVRGYIEQGVAEGARLVAGGPEAPRETGYYVSPTVFADVTPDMTIAQEEIFGPVVSLMRYEDEDDALRIANGTVYGLAGAVWGERDEAVAFARRMDTGQVDINGGRFNPLAPFGGYKQSGVGRELGTHGLAEYLHTKSLQF
>CP029188.1|AWI27793.1|584471_584795_-|hypothetical-protein
MRGLADGGAELAVVLRLRWDDVAALGREASRLAEQRGAPVTLDEAASHRLRTWSSVSKSQEEKGQQAPAAISGGQQVDRTRSQVASISPPTVRPPQHSPTALGQTPA
>CP029188.1|AWI27794.1|584988_587229_-|molybdopterin-binding-oxidoreductase
MPGTDATRTALRICPLCEATCGLVLTVERDGAGERVDTVRGDRADVFSGGFICPKGASFGELDSDPDRLRTPLVRDAHGELREAGWDEAFDVIAARIRPLIEEHGPDAVGLVLGNPNVHTMAGGLYPPVLLSTLGTRNLFTASTLDQMPKHVSSGLLFGNPLAIPVPDLDRTDHLLLLGANPLDSNGSLCTAPDFPGRLKALRRRGGRLTVVDPRRTRTARLADRHVAIRPGTDALLLAALVHVLFEEDLTAPGALAGQVDGMDGIREAVRDFTPEAAAAACDMDAAVIRTIARELASAPTAAVYGRIGSCTVEHGTLAGWLVDVLNILTGNLDRPGGVLFPLAAHDRAPRPATEPARPGKGFALGRWTSRVAGHPEAKGELPIAALAEEIETPGEGRIRAVITIAANPVLSAPDGDRLDRALGGLDLMVSVDPYLNETSRHADVVLPPPPPSRSGHYDFSFNGLAVRNQVRYTPPAIPLDEGALDECEIHARLILAVGGMHGAEPSAVDDMVVSGSLARAVADPRSPVHGQDAEELAARLNGRSGPERRLDMMLRLGPYELTLDDLLAHPHGIDLGPLRPRLAQVLRTRSGRVELLPGPIAADLPRLRRALGVRGDGLVLVGRRHLRSNNSWMHNIPALQGGSNRCTLQVHPDDAARLGLGDGALARVKAAGGELEVPVEITDEVRTGVVSLPHGWGHDRPGTRMRVAAARPGVNVNQLLDGSLLDPLSGTSVLNGFAVEVAPAR
>CP029188.1|AWI27795.1|587680_589009_+|homogentisate-1,2-dioxygenase
MSGIEQARKAAEGLEYLSGFGNEHSSEAVPGALPLGRNSPQRAPLGLYAEQLSGSAFTEPRALNRRSWLYRIRPSAAHPPFVRTGDGALRTAPFTETVPDPNRLRWDPLPEPAPGTDWLSGLWTLGGNGDATQRTGMAVHLYHANTSMERRVFGDADGELLIVPERGGMLLRTELGLLSVRPGEVALVPRGVRFRVELLDDTVRGYVCENYGQPFSLPELGPIGANGLANPRDFRVPVAAYEDVEGDVEVVNKFCGNLWTATYDHSPLDVVAWHGSHVPYVYDLRTFNVMGTISYDHPDPSIFTVLTSPSDTPGLAGVDFVVFAPRWLVGEDTFRPPYFHRNVMSEYMGLIEGAYDAKTSGEGGFVPGGGSLHNMMSAHGPDRETFDRASAADLVPQRIDDGLAFMFETRWPVTATAQAANADHLQTGYDDVWQGLERHFRS
>CP029188.1|AWI27796.1|589246_589996_+|GntR-family-transcriptional-regulator
MTAFAPDSLVLNRKLPLWYQVSQSLRASILGRRPHDPLRLPTEEQLAEHYGVSVLTMRQALKELESEGLISRHRRRGTFIEPGARRSAPRRLLGSIDAIVAQQSGERTTVLGHAAEPVPGELAEYFPDGDEVVTYRRLRCDGDSGEPTNWAENAVRPDVAARLDVADLERWPMTKVLRDVVGVRISRITDTVEARLADPETAELLQVPLLSPILHYTGVTYDAEGRVVDVARIRYRGDRFSFSVTIEAE
>CP029188.1|AWI27797.1|589992_591189_+|DNA-methyltransferase
MSGQEGGAGGAVPLDDVMPWSTGPLRLGRGWIVAPDAGTLRARWDALVAAGGRERAALFQQTRARGLGSSVAALPGQATGTGRFAAERGTCPEPVRIAHAPFDQQWIIPDHRLIDVARPELWRVADGRQLFAVEQGRVPGDGGPAVLVTGALPEGRGTGRPGRIRPLYRRPGAREPNLAPGLLAALRERFPDAAEPGDVLAWVAAAGRPTAGGCEVPFTADPGVWERGVRLGRRLIGIQLRGARDGERPRLPGGRRPYVRAAVPSRPATLVYDPQEEALLLDGGRIAPVPAGAWDFRVGGVRVLEDWFARRTAEPAAGTLEALGPSAWPQEWTSELLELVTVLALLGQLDQPRAELGADIARTGWHDLRVPPAPRSARAPASVLDHREEGPGGQFVLL
>CP029188.1|AWI27798.1|591469_592693_+|CoA-transferase
MSQPPPLEGITVVAVEQAVSAPFATRQLADLGARVIKVERPDGGDFARGYDTAAGGLASHFVWCNRGKESLAVDLKDPRGLDAVRRLVARADVFVQNLAQGAAARLGLDAATLCAAHPRLVAVDISGYGGYGPYAHKRAYDMLVQCEAGLVSVTGTAEQPVKAGIPAADVAAAMYAFSGVLAALLRRGTTGRGGPVEISMLESLAEWMGHPLHHGMHGGEAPERTGLAHAVIAPYDAYPTADGGQVLLSVQNDREWQRLAERVLGRPELAEDPAFATNKARTANRGRTDAVVARALARLDTAGAVAALEEAGIACARLNSVADLAAHPQLAARDRWRDVATPAGPLRAMLPPITFPDGPEPGMGAVPALGEHTGALLREAGLTAAEVAELHRDGVVPAEHPPGGHLG

Crispr_ID: CP029188_2

• CRISPR_ID: CP029188_2
• CRISPR_location: 781018-781121
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_2

Consensus_repeat	Method
CGACGCACGGGCCCCCGGCCGACCCC	CRISPRCasFinder

spacers of CP029188_2

>2.1|781044|52|CP029188|CRISPRCasFinder
ACGAGCACCGACCTCACCGCGCGGAACCACCCGGCGCCCGGCGGCTCCGCCA

CRISPR arrays and Neighbor proteins around CP029188_2

CRISPR arrays

The CRISPR arrays of CP029188_2

>merge|CP029188|2|781018-781121|CRISPRCasFinder
CGACGCACGGGCCCCCGGCCGACCCCACGAGCACCGACCTCACCGCGCGGAACCACCCGGCGCCCGGCGGCTCCGCCACGACGCACGGGCCCCCGGCCGACCCC

>CP029188|2|2|781018-781121|CRISPRCasFinder
CGACGCACGGGCCCCCGGCCGACCCC	ACGAGCACCGACCTCACCGCGCGGAACCACCCGGCGCCCGGCGGCTCCGCCA
CGACGCACGGGCCCCCGGCCGACCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI27944.1|789302_790136_-|hypothetical-protein	unknown	unknown	gnl|CDD|372611
CP029188.1|AWI27935.1|770922_771645_-|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|378410
CP029188.1|AWI27945.1|790244_791066_-|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl|CDD|237285
CP029188.1|AWI27932.1|766445_767654_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173838
CP029188.1|AWI27930.1|764300_765089_-|short-chain-dehydrogenase	unknown	unknown	gnl|CDD|236110
CP029188.1|AWI27940.1|782739_783906_+|hypothetical-protein	unknown	unknown	gnl|CDD|377122
CP029188.1|AWI27936.1|771894_773355_-|glutamate-synthase-subunit-beta	unknown	unknown	gnl|CDD|237213
CP029188.1|AWI27943.1|787987_789016_-|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl|CDD|237284
CP029188.1|AWI27946.1|791062_792367_-|tryptophan-synthase-subunit-beta	unknown	unknown	gnl|CDD|235288
CP029188.1|AWI32880.1|781373_782666_+|hypothetical-protein	unknown	unknown	gnl|CDD|377122
CP029188.1|AWI27934.1|768399_770652_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI27941.1|783902_785549_+|hypothetical-protein	unknown	unknown	gnl|CDD|377122
CP029188.1|AWI27942.1|787000_787798_+|CoA-ester-lyase	unknown	unknown	gnl|CDD|225184
CP029188.1|AWI27947.1|792436_792655_-|tryptophan-synthase-subunit(beta)	unknown	unknown	unknown
CP029188.1|AWI27931.1|765138_766290_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173841
CP029188.1|AWI27933.1|767958_768390_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI27939.1|779772_780768_+|hypothetical-protein	unknown	unknown	gnl|CDD|377122
CP029188.1|AWI32881.1|785837_787004_+|acyl-CoA-transferase	unknown	unknown	gnl|CDD|367110
CP029188.1|AWI27937.1|773347_777937_-|glutamate-synthase-large-subunit	unknown	unknown	gnl|CDD|236968
CP029188.1|AWI27938.1|778809_779538_-|hypothetical-protein	unknown	unknown	gnl|CDD|153124

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI27944.1|789302_790136_-|hypothetical-protein	gnl|CDD|372611	pfam13462, Thioredoxin_4, Thioredoxin.	8.68982e-22
CP029188.1|AWI27935.1|770922_771645_-|VWA-domain-containing-protein	gnl|CDD|378410	pfam10138, vWA-TerF-like, vWA found in TerF C-terminus. vWA domain fused to TerD domain typified by the TerF protein. Some times found as solos.	8.34453e-87
CP029188.1|AWI27945.1|790244_791066_-|tryptophan-synthase-subunit-alpha	gnl|CDD|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	9.28732e-112
CP029188.1|AWI27932.1|766445_767654_+|acyl-CoA-dehydrogenase	gnl|CDD|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	6.69813e-25
CP029188.1|AWI27930.1|764300_765089_-|short-chain-dehydrogenase	gnl|CDD|236110	PRK07831, PRK07831, SDR family oxidoreductase.	7.38698e-156
CP029188.1|AWI27940.1|782739_783906_+|hypothetical-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	8.90195e-38
CP029188.1|AWI27936.1|771894_773355_-|glutamate-synthase-subunit-beta	gnl|CDD|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
CP029188.1|AWI27943.1|787987_789016_-|prolipoprotein-diacylglyceryl-transferase	gnl|CDD|237284	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed.	1.58023e-112
CP029188.1|AWI27946.1|791062_792367_-|tryptophan-synthase-subunit-beta	gnl|CDD|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
CP029188.1|AWI32880.1|781373_782666_+|hypothetical-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	1.87865e-21
CP029188.1|AWI27941.1|783902_785549_+|hypothetical-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	1.60558e-38
CP029188.1|AWI27942.1|787000_787798_+|CoA-ester-lyase	gnl|CDD|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	5.19426e-49
CP029188.1|AWI27931.1|765138_766290_+|acyl-CoA-dehydrogenase	gnl|CDD|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	5.39019e-134
CP029188.1|AWI27939.1|779772_780768_+|hypothetical-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	2.88462e-46
CP029188.1|AWI32881.1|785837_787004_+|acyl-CoA-transferase	gnl|CDD|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.72104e-140
CP029188.1|AWI27937.1|773347_777937_-|glutamate-synthase-large-subunit	gnl|CDD|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
CP029188.1|AWI27938.1|778809_779538_-|hypothetical-protein	gnl|CDD|153124	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	4.14081e-92

Protein sequences

>CP029188.1|AWI27939.1|779772_780768_+|hypothetical-protein
MDWIACDRARGALLGLAVGDALGAPAENMRPSEIRRRWGRIEGFVTDSPAGTDDTEYAIFSGLLLARHGSALTVAHVEKAWHHWIADLDEGPFRGAGFSERGTLENLRRGLAAPITAQHRHAWSDGLAIRAAPFGVFAAGSPGEAARLVAVDGCVSHDGEGIYGGQAVAAGVAAAMAGAGPAGVIGAALSAVPLDSWTSRSLRRAVVAAERAGTDPLGRERTVRSAVVVGGYPWTDLAPEAVGLAFGAFAAARGDFRTSVLTAVNMGRDADTTAAVAGALAGAMSGASAIPPDWAAAIGPVRGSCLPSMRGYHVLDIADLLTPYDDAEALS
>CP029188.1|AWI27938.1|778809_779538_-|hypothetical-protein
MSIIETEATLHEAHRDNHTHRDVNGGWLRPAVFGAMDGLVSNLALMSGVAGGAVSPQTIVITGLAGLAAGAFSMAAGEYTSVASQRELVQAELEVERRELRKHPVDEMEELAALYVARGVEPRLAREVAVQLSRDPERALEIHAREELGIDPDDLPSPTVAAVSSFASFALGALLPVLPYLLGATSLWPAVLLALLGLFACGALVSRVTVRGWWSSGLRQLALGGAAAAVTYAIGSLVGAAV
>CP029188.1|AWI27937.1|773347_777937_-|glutamate-synthase-large-subunit
MRSDAWSPMDGRPAPQGMYDPRNEHDACGVGFVATLTGVASHELVEQALTVLRNLEHRGATGSEPDSGDGAGILLQVPDAFLRDVAGFELPEAGSYAVGIAFVPQGAADHAVSRIETIAAEEGLEVLGWRDVPVAPELLGATARSTMPVFRQLFVSGAAPGAEGTGGGVISGIALDRKAFVLRKRAEREAGVYFPSLSARTIVYKGMLTTGQLEPFFPDLSDRRFATAVALVHSRFSTNTFPSWPLAHPYRFVAHNGEINTVKGNRNWMRARESQLVSELFGDRDLERIFPVCTPDASDSASFDEVLELLHLGGRSLPHSVLMMVPEAWENHESMDPARRAFYQYHSTMMEPWDGPACVTFTDGTQVGAVLDRNGLRPGRYWVTDDGLVVLSSEVGVLDIDPAKVVRKGRLQPGRMFLVDTAEHRIIEDDEIKAALAAEHPYEEWLDAGIIELGDLPEREHIVHTHASVTRRQQTFGYTEEELRVLLAPMARTGAEPIGSMGTDSPIAALSERPRLLFDYFTQLFAQVTNPPLDAIREELVTSLLSSLGPQGNLLDPTAASCRSVTLPFPVIDNDELAKLIHINADGDMPGMKAVTLSGLYRVSGGGDALAARLDEVCAEADAAIEGGARLIVLSDRHSDAEHAPIPSLLLTSAVHHHLIRTKQRTQVGLLVEAGDVREVHHVALLIGYGAAAVNPYLAMESVEDLLRAGTFIEGLEPEQAIRNLIKALGKGVLKVMSKMGISTVASYRGAQVFEAVGLDDAFVAQYFDGTATKIGGAGLGVIAEEVAARHAKAYPASGIAPAHRALEIGGEYQWRREGEPHLFDPETVFRLQHATRTKRYDIFKKYTDRVNEQSERLMTLRGLFGFKSGRPSIPLDEVEPAAEIVKRFSTGAMSYGSISQEAHETLAIAMNQLGGKSNTGEGGEDPERLYDPARRSSIKQVASGRFGVTSEYLVNADDIQIKMAQGAKPGEGGQLPGPKVYPWVAKTRHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPAARIHVKLVSEVGVGTVAAGVSKAHADVVLISGHDGGTGASPLTSLKHAGGPWELGLAETQQTLLLNGLRDRIVVQTDGQLKTGRDVVIAALLGAEEFGFATAPLVVSGCIMMRVCHLDTCPVGIATQNPVLRERFNGKAEFVVNFFEFIAEEVREILAELGFRTLDEAVGHAELLDTTRAVNHWKAQGLDLAPLFHVPELPEGAVRHQLVEQDHGLEKALDNELIKLSADALAAATAEDAQPVRAQVAIRNINRTVGTMLGHEVTRKFGGAGLPDDTIDITFTGSAGQSFGAFLPRGVTLRLEGDANDYVGKGLSGGRIVVRPDRGADHLAEYSTIAGNTIAYGATGGELFLRGRTGERFCVRNSGALVVSEGVGDHGCEYMTGGHAVVLGETGRNFAAGMSGGVAYVVDLDEDNVNAGNANAVETLSDTDKEWLHDVVRRHHEETGSTVAEKLLADWPAAADRFSKIIPITYKAVLAAKEAAELAGLSERETTEKMMEAATHG
>CP029188.1|AWI27936.1|771894_773355_-|glutamate-synthase-subunit-beta
MADPKGFLTTGREVAETRPVAERVKDWNEVYVPGSLLPIISKQAGRCMDCGIPFCHNGCPLGNLIPEWNDYAYRENWQAASERLHATNNFPEFTGRLCPAPCEAACVLGISQPAVTIKNVEVSIIDKAWDTGDVKPQPPERLSGRTVAVIGSGPAGLAAAQQLTRAGHTVVVYERADRIGGLLRYGIPEFKMEKRHVNRRIEQMRAEGTKFRTGIEIGRDLTATDLRKRFDAVVIAAGATTARDLPVQGRELNGIHQAMEYLPLSNKVVEGDFVTPPITAEGKHVVVIGGGDTGADCVGTAHRQGAASVTQLEIMPRPGEERSSGQPWPTFPMLYKVTSAHEEGGERVYSVSTTHFEGDADGNVQSLHLVEVEFVDGRPAPKPGTERAIPAQLVTLAMGFTGTDVENGLVTQFGLALDERGNIARDADFATNVDGVYVAGDAGRGQSLIVWAIAEGRSAARGVDRYLTGASELPAPIRPTDRSLTV
>CP029188.1|AWI27935.1|770922_771645_-|VWA-domain-containing-protein
MAAISLRKIEETAPALVSLYKSAGVSLAKHGLSDRRAAVYLVVDYSGSMRPYYQDGSVQALADRVLGLAAHLDDDGRVPVVFFSTDIDAETDVELAGHEGRIERIVAGLGHMGRTNYHLAMDAVIDHYLDSGATEPALVVFQTDGGPSNRAAAERYVCKAAKLPMFWQFIGFGDPGSRQFDFLRRLDDLAVPAKRPVDNAGFFHAGRDPRRLSDEELYDHLVSEFPEWLATARASGIVRS
>CP029188.1|AWI27934.1|768399_770652_-|hypothetical-protein
MRGTVVLLCALVVVVGSPWVVDALTAGWTDNRVLELLYRALYVPRWDLTPGPDPQSATIAWSGNAGFVAVILGIALLVPRLVRPASGARGAQWAAALGTGVLIALLAALPSWALVLWGDPATALAFGPDPSAALVYILVDSLCFGVLLGLVVAAVFAVAGTPAPAGRGAAGRTRERKRGMTSPDGPATAPTGSAPGDATRYLCAAAYTDPAFARLVVEDVLADELAAVAVSPGVDLVPVARHCLAARRLTARRDRRLTLAFGPVLLFAPFWLLFGALALKALGAAARVPGRSLRGRELPDFGQAVRRLAVTGAALLATALPMGLALSALPLPGFPAWLFGGYLGGIPALLAVLVAGVLAFRTVAAAERDVDARLRMLRRESFSPDAVPQPLPAEPWAQARITKLAEAQHGNVTVYSGFSPFIGHSGKDSHWALSIPLLPAQSPSGSRAERGTVTPFDAWDVVECLRSGLRNAAGRHPGEPLLDGRGLTGLRLEDRVLVSGTQVAANALLLPHPGRAPATRLPAPEVRRIALNPEGPARHHLAAHLPLWGDEVVPSQFLQVAVSGRTLHLRCDRHILGPVRPDLHAVDSLPARLTDEHRRALALTALRRTGAALFAAPASALRYARYGSRRTRTLGRERKAAAQDPAFDRGARLSIREAALSPAYLNHFQRGDAESALAALDRHTLAAVREFLDEHGVDTADFRTQTQTILNNGVLQQGGVSVVANQAVGQGAQATTQVAAAPAADRTPRR
>CP029188.1|AWI27933.1|767958_768390_-|hypothetical-protein
MSQPSADGSPPYPDHTQRPPGGPAVNLGVQQYGGHSQVGNQAVGPGARAVAGQIGFQALAPEQRERAAELMELIELLLERHRAELPDQRTPRVELRRLREELDEGAPEPGVVRRALERLTAFVQPVAPLATAVGELAQVVQSF
>CP029188.1|AWI27932.1|766445_767654_+|acyl-CoA-dehydrogenase
MRFLPTDEQLAFTGSLHTMLAAAGTPAAARAWAAGDPAPGRAVWARLAEAGVFALAVPESRGGLGPLPAELALAFVELGRHAVPGPLVETVAAAALLTALEEPAPAERLLPGIAAGEVMATLRLPGPGPYALDADAATCVLVVDAAVPGPRPGPPGGGGAGDGADDGGADANGGGGRGINAGDGAVGRDVGGGGGGGGERVENGDGNSGGSGDASRRGPGAARPQALRIAPGHGPVRASVDPVRRLAVPEEGGEVLAAGPGVAAAAARAADWARLATAAQALGAGLALLDRTAEHVVRRTQFGVPIGSFQAVKHRLADTLIALEFARPLVLGAAVSMARADIAAAKVAAGEAAYGAARTALQLHGAIGYTEELDLALWLRKARPLRDAWGTPAQCRAAVLRP
>CP029188.1|AWI27931.1|765138_766290_+|acyl-CoA-dehydrogenase
MDLTHTADEDAFRAEARAWLRAHVPDPPPPSLETAEGFAAHRAWEAELHADRWSVVPWPERYGGRGAGILQWLVFEEEYYAAGAPGRVSQNGIGLLAPTLFDHGTEEQRARILPPMASGEVIWAQAWSEPEAGSDLASLRSRAVRTPGGWLLSGQKTWSSRAAFADRAFGLFRTAPDADRPHRGLTYLMFDLRAPGVTVRPIRRLDGKPAFAELFLDEVFVPDEDVIGEPGQGWRIAMSTTGNERGLMLRSPGRYLAAARRLVGLWRAGADPSDTALRDRVADAVIGARAYQLFTCAAASRFADGSAIGAESSLNKVFWSEYDIALHETALDLLGAEGERADGPGGWAEGYVFSLAGPIYAGTNEIQRDIIAERLLGLPKGRR
>CP029188.1|AWI27930.1|764300_765089_-|short-chain-dehydrogenase
MTDNKARYVPGHALLAGRTAVVTAAAGAGIGGATARRLLEEGARVLIGDAHARRLKETEEALADEFGPDAVASLVCDVTDETQVRALFGEAARLHGGPDVVVNNAGLGGTAALVDMSDDQWTRVLDVTLNGTFRCTRAALRAFRAHGRGGVIVNNASVLGWRAQAGQAHYAAAKAGVMALTRCAAVEAAEFGVRVNAVAPSLAMHPHLVRTTSAALLRDLTAREAFGRCAEPWEVANVIVFLASGYSSYMTGETVSVSSQHP
>CP029188.1|AWI32880.1|781373_782666_+|hypothetical-protein
MRPAAARPGEAAGTAAPPGHDAYRTRIEGLLLGLAAGDAAGWPAARHRAARMPEWTRRLTRELDTFAEQNATTTLPVPIALNQPPEPLRLGPSDDAEWAAFTAETVLASAAERFDGLDPGRRVRSAVDLAWNALAAKIAAAEARAPEVEAAVPPLRARISVRAGLGNLATGLRPPATGHDNPHYFDDAACVRAAVLAVVHPGDPRMAAELAEFDARYTQDGDGVHGARAMAAAVAAALGGARVDAAVDAALAELPEATEIGRNARHALALARHAEDAFSLVPLLEHQIVDHVYSYGIAAAETVPVALALVTAARGRMGGALPAAACLSRVADSAPALAGALTGVLGGARAVPATWRDACRTLAGCALPRLAGTDLLELAGRLARVIRPPDAPPEAPHAPPSTAPPSTAAAAPAAPATAATGGGPGRSAGR
>CP029188.1|AWI27940.1|782739_783906_+|hypothetical-protein
MTLSAHAVATLDDRITGSLVGAAVGDALGGPVEGYTPEQIVERHGGRVQGVVGPWHGDDWRTARPIAPYHKGDGHVTDDTLMTHALVRVYATVRDHLDAYAVADHLVPDLVSTPRWIPELEAEALPLQRLFLAEKWLAARLHYGHADPREAGTGNIVNCGAAMYMAPVGLVNAANPAAAYAEALDVAGAHQSSYGREAAGVLAAAVAAACAPGATPESVVGTCLSLAKDGTRSAIEAVAEVASRHSDFEPALRPLREAVAPFDTVGPDYRAPSLAARRPSRLHSVEELPVALGMLLIGDGDYRRTVLGSVNYGRDCDSIATMSGALAGALYGEEAIPADWVKTVAEASRLDLHAPARTLTEVAYEIFARDTRRRRAHEAAFAALADAR
>CP029188.1|AWI27941.1|783902_785549_+|hypothetical-protein
MNLRLTWVQPEDLVGHELRQAAEDGRDASAVAVRWRAAGGTPAPPASGASPRPAPPGLRALAIRLLDELDALPAPLADREPTSLPAIRAACPDWPESRPRGAPGRAGHGTEDRPQAGPGRTPEDRPRLDPRDGTHDRRRGTQAGTGDRDRVTPDGTHDRRWGTPDGTHDRQRGAPDGTDGRKRGAPGHGPGGPPERRLHAAWLGRAAGCLLGKPVEKLPLHAIRALARATGNWPLSTWFTAKGVPPGLLAAHPWNRRSAPTSLAENIDGMPEDDDLDYPLLNLLLLQRYGQGFGTADVARLWLDELPAGRTFTAERVAYRNLLQGVEPPATATRHNPFREWIGAAIRADVHGWTHPGDPAAAAEAAHRDAVLTHTANGVYGAMFVAAALAVAAGGAADVHMCLREGLRVVPPRSRLAGAVRHGIATAAAHRDFDTVVDRLHAAHGAYHWVHAVPNAALLAAALTHADGDFTGSICRAVSGGWDTDSNGATAGSLAGLLAGRPDRLPERWTAPLRNRLATTVGGFDGVGFDTLARLTCAHVTHREDACP
>CP029188.1|AWI32881.1|785837_787004_+|acyl-CoA-transferase
MRVLDLATLFAGPLAATMLGDFGADVIKVEHPRKPDPSRGHGPGKDGVGLWWKLLGRNKRTITLDLSTPGGRETFLRLAATADVVVENFRPGTLERWRLGWEELSAASPRLVLARVTGFGQFGPYCHRPGFGTLAEAMSGFAALTGEPDGPPTLPPFGLADSIAALATSYAVMTALTARAATGRGQVVDMAIIEPILTVLGPQPIWYDQLGYVQPRTGNRSRNNAPRNTYRAADGSWLAVSTSAQSVAERVMRLVGRPELTSEPWFASGSGRAEHADLLDEAVGAWIARHTQDEVVAAFDKAEAAVAPVYDVRDVMADPQYRALDSVTEVPDPELGPIRMQNVLFRLSETPGGIRWAGRPHGADTDAVLGELGLTPGRIAGLRAEGVL
>CP029188.1|AWI27942.1|787000_787798_+|CoA-ester-lyase
MTPLTWLYAPGDRPEVVHKALSSGADIVIVDLEDAVAPHRKAYALAATAELLSSPQPVPVHVRIHAERDIVPLAPLPGLAALRIPKVTRATDIRVPARLAPGTALYALLESAGGVEHAFAIATADPAVRGIALGEADLRADLGVRNDTGLDWPRSRVVVAARAAGLPPPTQSVFPDIRDLDGLAASCAHGRSLGFLGRAAIHPRQLPVIERAYLPSTEEVEAAEEIVKAAATDAGALALPDGRFVDAAVVAAAHRTLSLAGRDGG
>CP029188.1|AWI27943.1|787987_789016_-|prolipoprotein-diacylglyceryl-transferase
MDLAYIPSPSTGVVHLGPLPLRGYAFCIIIGVFVAVWYGNRRWIARGGKAGTVADIAVWAVPFGLVGGRLYHVITDYQLYFGEGRNWVDAFKIWEGGLGIWGAIALGAVGAWIGCRRRGIPLPAYADAIAPAIAFAQAIGRWGNWFNQELYGKPTDLPWALEISEGVNREAGLYHPTFLYESLWCVGTALLVIWADRRFRLGHGRAFALYVAAYCAGRAWIEYMRVDEAHHILGLRLNVWTAMLVFVLAVVYIVVSARLRPGREEVVEPAAVRQGGNGEKGENGEKDGDKGEDGIAGTEGDADSASLAASASASAGTPGSGAPSPGKDAEGDPADSGSAGRS
>CP029188.1|AWI27944.1|789302_790136_-|hypothetical-protein
MVVSENNHDGMRAARERLKRERELQKTRDKRRRLLIVSAAVVGVLGLAAVVGVIAAGGGGKDQGSTAGGPVVAPSGAQGEDALALPAGAAGAPSTLTIWEDFRCPACAQFENVMRDTIHELTDSGQLKVRYHLATIIDGGMGGNGSRRAANAAACAQDAGKFVEYHDVLFQNQPPESEDAFGDDKRLIELAGKVPGLVTPAFTECVESGRHDAWVEKSDQAFEEKNFRGTPTVLLNGESVFPQKDGEQMSPENLRKWVAEANQGKKPRTGQPSPAAS
>CP029188.1|AWI27945.1|790244_791066_-|tryptophan-synthase-subunit-alpha
MSGNIRLLSDTLARAKSEDRAALIAYLPAGFPTVDGGIEAIKAVLDGGADIVEVGLPHSDPVLDGPVIQTADDIALRGGVRIADVLRTVREAHTATGKPVLVMTYWNPIDRYGVERFTAELAEAGGAGCILPDLPVQESAVWREHARKHELATVFVVAPSSRDARLAEITAAGSGFVYAASLMGVTGTRESVGAQAQDLVRRTRATAAGRGLPVCVGLGVSNAEQAAEVAGFADGVIVGSAFVKRLLDAGDQAAGIAAVRALAGELAEGVRKR
>CP029188.1|AWI27946.1|791062_792367_-|tryptophan-synthase-subunit-beta
MPSQYFVPDPEGRVPDAAGYFGDFGGTFIPEALVAAVDEVAVEYDKAKSDPAFAAELDDLLVHYTGRPSALTEVPRFAGHAGGARIFLKREDLNHTGSHKINNVLGQALLTRRMGKTRVIAETGAGQHGVATATACALFGLDCTIYMGEIDTERQALNVARMRMLGAEVVPVKSGSRTLKDAINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERTGRLPDAAVACVGGGSNAIGLFHAFIPDEGVRLVGCEPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDDEGQITEPYSISAGLDYPGIGPEHAYLKDTGRGEYRAVTDAAAMRALRLLSRTEGIIPAIESAHALAGALELGAELGEDGLILVNLSGRGDKDMDTAARYFGLYDADGGAATDASVEADAAGDVAEIEGDAK
>CP029188.1|AWI27947.1|792436_792655_-|tryptophan-synthase-subunit(beta)
MTAVARPAPSATAPGLHRPGRAAAGACAPHAPLARGCRPRGCRAPARRVHGRRVRYVIGDEPGQVNGMRWRR

Crispr_ID: CP029188_3

• CRISPR_ID: CP029188_3
• CRISPR_location: 910344-910437
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_3

Consensus_repeat	Method
CCGCGCGGACGGCGGGCAGGACC	CRISPRCasFinder

spacers of CP029188_3

>3.1|910367|48|CP029188|CRISPRCasFinder
GACCCGGGGGAACGCGCGGACCGGACGGGCGCCGCCGCGCGGACGGGA

CRISPR arrays and Neighbor proteins around CP029188_3

CRISPR arrays

The CRISPR arrays of CP029188_3

>merge|CP029188|3|910344-910437|CRISPRCasFinder
CCGCGCGGACGGCGGGCAGGACCGACCCGGGGGAACGCGCGGACCGGACGGGCGCCGCCGCGCGGACGGGACCGCGCGGACAGCGGGCAGGACC

>CP029188|3|3|910344-910437|CRISPRCasFinder
CCGCGCGGACGGCGGGCAGGACC	GACCCGGGGGAACGCGCGGACCGGACGGGCGCCGCCGCGCGGACGGGA
CCGCGCGGACAGCGGGCAGGACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28031.1|905740_907027_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|226951
CP029188.1|AWI28037.1|911636_912110_-|hypothetical-protein	unknown	unknown	gnl|CDD|375065
CP029188.1|AWI28033.1|908003_908783_+|esterase	unknown	unknown	gnl|CDD|224561
CP029188.1|AWI28030.1|905054_905744_-|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|225107
CP029188.1|AWI28029.1|903849_904878_-|6-phosphofructokinase	unknown	unknown	gnl|CDD|274155
CP029188.1|AWI28040.1|914998_916795_+|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl|CDD|341233
CP029188.1|AWI28038.1|912168_913473_-|hypothetical-protein	unknown	unknown	gnl|CDD|223082
CP029188.1|AWI28027.1|899381_901322_+|phenazine-specific-anthranilate-synthase-component-I	unknown	unknown	gnl|CDD|223225
CP029188.1|AWI32888.1|899216_899285_+|trp-operon-leader-peptide	unknown	unknown	unknown
CP029188.1|AWI32889.1|913999_914761_-|metallophosphoesterase	unknown	unknown	gnl|CDD|277338
CP029188.1|AWI28035.1|909407_910226_-|endonuclease	unknown	unknown	gnl|CDD|226098
CP029188.1|AWI28041.1|916837_918490_-|cholesterol-oxidase	unknown	unknown	gnl|CDD|225186
CP029188.1|AWI28032.1|907062_907815_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|153251
CP029188.1|AWI32890.1|918795_919938_-|alpha-(1-2)-phosphatidylinositol-mannosyltransferase	unknown	unknown	gnl|CDD|340831
CP029188.1|AWI32892.1|921412_922639_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28039.1|913484_913934_-|cyclase	unknown	unknown	gnl|CDD|176861
CP029188.1|AWI28036.1|910633_911575_-|glucokinase	unknown	unknown	gnl|CDD|273246
CP029188.1|AWI28028.1|901642_903415_-|hypothetical-protein	unknown	unknown	gnl|CDD|366353
CP029188.1|AWI28034.1|908775_909411_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32891.1|920137_921355_+|hypothetical-protein	unknown	unknown	gnl|CDD|378217

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28031.1|905740_907027_-|sensor-histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.60248e-20
CP029188.1|AWI28033.1|908003_908783_+|esterase	gnl|CDD|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	3.72906e-40
CP029188.1|AWI28030.1|905054_905744_-|DNA-binding-response-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.24892e-64
CP029188.1|AWI28029.1|903849_904878_-|6-phosphofructokinase	gnl|CDD|274155	TIGR02483, ATP-dependent_6-phosphofructokinase_1, phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP029188.1|AWI28040.1|914998_916795_+|long-chain-fatty-acid--CoA-ligase	gnl|CDD|341233	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases. This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	0
CP029188.1|AWI28038.1|912168_913473_-|hypothetical-protein	gnl|CDD|223082	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning].	1.88039e-33
CP029188.1|AWI28037.1|911636_912110_-|hypothetical-protein	gnl|CDD|375065	pfam17230, DUF5304, Family of unknown function (DUF5304). This family of unknown function is found in Actinobacteria.	9.32866e-57
CP029188.1|AWI32889.1|913999_914761_-|metallophosphoesterase	gnl|CDD|277338	cd07392, MPP_PAE1087, Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.20858e-16
CP029188.1|AWI28039.1|913484_913934_-|cyclase	gnl|CDD|176861	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	9.10232e-53
CP029188.1|AWI28028.1|901642_903415_-|hypothetical-protein	gnl|CDD|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	9.11777e-09
CP029188.1|AWI28035.1|909407_910226_-|endonuclease	gnl|CDD|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	1.26066e-20
CP029188.1|AWI28041.1|916837_918490_-|cholesterol-oxidase	gnl|CDD|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.28663e-21
CP029188.1|AWI28032.1|907062_907815_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl|CDD|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	3.80456e-47
CP029188.1|AWI32890.1|918795_919938_-|alpha-(1-2)-phosphatidylinositol-mannosyltransferase	gnl|CDD|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.81355e-72
CP029188.1|AWI28036.1|910633_911575_-|glucokinase	gnl|CDD|273246	TIGR00744, Glucokinase_Glucose_kinase., ROK family protein (putative glucokinase). This model models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. [Unknown function, General].	4.75928e-137
CP029188.1|AWI28027.1|899381_901322_+|phenazine-specific-anthranilate-synthase-component-I	gnl|CDD|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	3.04465e-50
CP029188.1|AWI32891.1|920137_921355_+|hypothetical-protein	gnl|CDD|378217	pfam09594, GT87, Glycosyltransferase family 87. The enzymes in this family are glycosyltransferases. PimE is involved in phosphatidylinositol mannoside (PIM) synthesis, a major class of glycolipids in all mycobacteria. PimE is a polyprenol-phosphate-mannose-dependent mannosyltransferase that transfers the fifth mannose of PIM. The family also includes alpha(1-->3) arabinofuranosyltransferase, invloved in the synthesis of of mycobacterial arabinogalactan.	8.64824e-05

Protein sequences

>CP029188.1|AWI28035.1|909407_910226_-|endonuclease
MVTSATRPLPNSRTDPDGSVVIRVLGYNIRSLRDDEDALARVIRACRPDLVFVQEAPRFFRWRKHLARLAAKSELVVLGGGATAAGPALLCSLRARVERTEDVLLPLTPGLHRRGFATAVVRVGAARIGLLSCHLSLRADERHAQAGMLLDRLASMDVPHAIAAGDVNERPGGRSFRLLAAGLRDAWAVSPWGGEYTSTPAYPHQRIDAVFVTPGIEVLGCGVPVGLPGVDEADLKAATDHLPVLAALRVPAGAPPASATGPASGEGPRDAS
>CP029188.1|AWI28034.1|908775_909411_+|hypothetical-protein
MAEQHDADRDREPQPVDEEAAWAAIVAGYGQEPADPPGAKPFKSVEDLAGLQKAVRNDGPEPEGGDRADGSDGRGQSGGEGGAEEDEDEGPRPAKPLGSSVVFAPGVGGGPRDYKVAEPGDGDLDDSDEGHFVPPEPPPLPEADTTAKFAWLAVIGGPVLLLLAVILRWDMTWWLTTLGVGGFLGGFVTLVARMSHGDDEDDDDPGRGAVV
>CP029188.1|AWI28033.1|908003_908783_+|esterase
MPVLPGAEPYRHEGGEVGVLLCHGFTGSPQSLRPWAEFLAKRGLTVSLPLLPGHGTRWQDMAVTGWQDWYAEVDREFRALSEQCGQVFVFGLSMGGALTLRLAARHGDAISGIVVVNPANKVHGPAAHALPVARHLVRTTKGLANDIAKEGMDEVAYDRVPLHAAHSLRNFLRLVDGELPQVTQPMLLLHSPQDHVVPPADSARILSRVSSTDVREVLLEQSYHVATLDHDAERIFEESHAFIGRLAPSVGEKGSTTGG
>CP029188.1|AWI28032.1|907062_907815_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MKFSIGGALKLAFRPWVEGLENIPAEGPAILASNHLSFSDSFFLPAVLDRKVTFIAKAEYFTSPGVKGKLTAAFFKGVGQLPVDRSGARGAGEAAVRSGIEVIERGELFGIYPEGTRSPDGRLYRGKPGGLARVALATGAPVIPVAMIDTERIQPPGKVVPKLMSPGIRIGKPLDFSRYHGMDHDRFILRSVTDEVMYEIMKLSGQEYVDIYATAAKRQIADAEKAAKEAAKEAERAAKAAGGAERGGDR
>CP029188.1|AWI28031.1|905740_907027_-|sensor-histidine-kinase
MARRERVVRMSVELPLWRALAAYRVLTTGYAVLLLVFTGDRYERPWVAVGFLAVMAVWTFATLPRVANAAACTKRFLGADLTVALTGILLTPLADVHAQQIDSPTLPSIWTAGSVLAFAIKGGWRWAGFASSLVAVANIIERGEPSRDTIHNVLLVWVASIAIGYVVEVARASERTLARALEIEAATRERERLARDIHDGVLQVLAMVQRRGTEIGGEAAELGRMAGEQEVALRTLVAGGLVPASRVSEDAAQGAVVRLLDEPDEPDEPNEPDEPGGPGEPDEPGGGSAGAGGPVDLRSLLAPRVGSRVTLSEPGAPVLLPAHPARELAAAVGAALDNVRRHAGEGARAWILVEDGPDEVIVTVRDDGPGIPDGRLAQAEGEGRLGVALSIRGRLRDIGGTAELVSVPGQGTEVELTVPRGTRGRAER
>CP029188.1|AWI28030.1|905054_905744_-|DNA-binding-response-regulator
MTETSGAARQPVRVMVVDDHPMWRDAVARDLAAAGFEVVATAGDGPQAVRRARAAAPDVLVLDLNLPGMPGVRVCRELVGADSALRVLVLSASGEHADVLEAVKSGATGYLLKSAGAEELVDAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAPAAGPADPAAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGLDEA
>CP029188.1|AWI28029.1|903849_904878_-|6-phosphofructokinase
MRVGVLTGGGDCPGLNAVIRGIVRKGVQEYGYEFTGYRDGWRGPLEGDTVRLDIPAVRGILPRGGTVLGSSRTNPLKAEDGVRRIKENLAKHEVEALIAIGGEDTLGVAARLSGEYGIRCVGVPKTIDNDLSATDYTFGFDTAVGIATEAIDRLHTTAESHMRVLVVEVMGRHAGWIALHSGLAGGANVILIPEQRFDLEQVCAWVTSRFRASYAPIVVVAEGAMPRDGDMVLKDGTLDSFGHVRLSGVGEWLAKEIEKRTGKEARTTVLGHVQRGGTPSAFDRWLATRFGLHAIEAVRDGDYGKMVALRGTDIVRVPIADATAKLKTVDPALYEEVGVFFG
>CP029188.1|AWI28028.1|901642_903415_-|hypothetical-protein
MSPVSRRAALAAALAGAASGALAPPALARASSPASLAAAPAAAAGTPPPATVWVHRHDVNEGRFFRAGLGGPLTARKTGAAGPVTHEVSDAFGPLATLTEGARTVTVHGLRRTFTEQKKAFSDRFDRTVSGWGSSPGGGRWATPGTGRAEFRVEAGNSTIVLREDGFSQFATLPDGLGDADLTAVFTLDRVPAGDAVSAGVCCAYTDERNHYRARLSFLTTGEVRLTLEKEVGNTTTVLGGPVPLGSGFRPGDRWRLRLERAGSALRCRAWRDGQEEPAGWQAAATDSALGAGRVGIRVLANKGGTALPVSVLVGEFTAAGHWPDPPEVTHDLWVRLLDAPFDGVLTPALEERLRAWAGDTSPDALGYAAMFLPHAAGAVDPVPGTRVLGEAGYGPLGPGTGDGTREVGADFWEYMGLDTWTFPNGEAPAQPENTGPQKRWAGFLDCSGYVRMVYGHHMGMPMVNFRDFDGTNLPRTSADQAARGPGVVVAGVTAGGDPGQEPPPLDGLLAGDLVYFDTPGAAGDDGVGDDSGTINHVGIYLGRDRHGRHRFASSRKTPDGPTMGDLGALSVLDAGTELYSRSLRVIRRF
>CP029188.1|AWI28027.1|899381_901322_+|phenazine-specific-anthranilate-synthase-component-I
MHILDRLLDPGAPPFALLRRLTPGRDHDTVEVLTGPVREVERLADLPVGERPSLALVPFRQIRERGFDVRDDGTPLSVLVAEECHELPLGEVLDRLPAHPVNLEQGGFDVGDEEYAEIVRRVVADEIGRGEGADFVIRRTFTGVVPGFGRADALALFRRLLAGERGAYWTYVVHTGDGRPRGGESGGHGGEPGGRTLVGASPEVHVRMSGGTVVMNPISGTYRYPAGGPTADGLLDFLADRKETDELSMVVDEELKMMCTVGDMGGVVVGPRLREMSHLAHTEYELRGRSSLDVREVLRETMFAATVTGSPVQNACRVIERHEPVGPDGGGRGYYAGALALLGTDASGAQTLDSPILIRTADISASGEVRVPVGATLVRHSDPASEVAETHAKAAGVLAALGVRPERAREEAARPRLADDPRVRAALDARRADLAPFWLRMQALPERVRGHALVVDGEDTFTAMLAHLLRGAGLGVTVRRYDDPGVREAALAHDGPVVLGPGPGDPSDAADPKMRFLRSLTAELLRGHRGGLLGVCLGHELIAAELGLDIARKERPFQGAQLRIGLFGTVETVGFYNSFTAVCDDEAAGELALHGVELSRAPSGEVHALRGPGFAGIQFHPESVLTLRGPEIVRTLLDAVVPERAP
>CP029188.1|AWI32888.1|899216_899285_+|trp-operon-leader-peptide
MVHGMFAQTTQNWWWTAHPAAR
>CP029188.1|AWI28036.1|910633_911575_-|glucokinase
MGLTIGVDIGGTKIAAGVVDEEGTILETHTVPTPPTAEGIVDAICSAVSGAGKGHDIEAVGIGAAGYVDDKRATVLFAPNIQWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHSDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCWEQYASGRALVRYARQRSAAVPENAAILLGLGDGTPEGIEGRHVSEAARQGDKVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGELVLDPIRKSFRRWLIGGQWRPHAQVLAARLGNKAGLVGAADLARQG
>CP029188.1|AWI28037.1|911636_912110_-|hypothetical-protein
MSDATERPAVDADAWATACAEDLQEERARRSERYGPHTTGTAGDELRKLLDAVAEKVSSLQNPLLGLAGQGTVQQLVNQAKSAVEPVIERNPQVFDHLAAAGNELLAAYRSAVEGHERRWTRNEPSAGTDGTGGTDGTGRQDRRDEGPGPSEKIDLD
>CP029188.1|AWI28038.1|912168_913473_-|hypothetical-protein
MRTVFVTGTGGAGRSTVAAALALAGARRGERVLLLSDEPPEALTGTGPGAPGPGPADPRGPGGSSGWGGSDGSRGSDGSSGSDSWSGSDGSGGSDAGPPGLTVARVDPAAGFRREFLGLQERAGAALDLLGAVPFEDGELTELPGSEQFALLRALKQAAGDRHDLLVVDLPPVRQAVALLALPEQLRRYLRRLLPAERQAARSLRPVLAQLAGVPMPAQWLYETAARWDEELAAVQALIESPGASVRLVAEPGPEAADHALRTARLGLALHGPAPDMVIANRVVPAGSGDPFLAALSGRQQSALKGWREEFGDVPVREVAHTGRDPRQPGELAGLLDGPAGGMSGPLPGNRWTVEDRRSEDGVLVWRLPLPGAAKDRLQLVRRDDELFLTAGPFRRVLTLPSVLRRCAVSGAALRDGELRIRFEPDPALWPRSR
>CP029188.1|AWI28039.1|913484_913934_-|cyclase
MAEHTSSSITIDAAPADVMGVISDFARYPEWTGEVKETEVLEKDGRGRALQVRLVLDAGAIKDDHVLAYTWTGDDTVSWTLVKSQMLRALDGSYSLKPVAGGERTEVTYQLTVDVKIPMLGMIKRKAEKVIIDRALAGLKKRVESGPKG
>CP029188.1|AWI32889.1|913999_914761_-|metallophosphoesterase
MRVHVVSDVHGNATDLARAGQGADALICLGDLVLFLDYADHSRGIFPDLFGVENADRIVELRTARRFEEAREFGRSLWAGLDRDAVILGAVRKQYREMFAAFPTPTYATYGNVDVPALWPEYARPGTTVLDGERIELGGLVFGFVGGGLRSPMRTPFEISDEEYAAKVEALGEVDVLCSHIPPDVPELTYDTVARRFERGSRALLDAIHRTRPRYSIFGHVHQPLVRRMRIGATECVNVGHFAATGRPWALEW
>CP029188.1|AWI28040.1|914998_916795_+|long-chain-fatty-acid--CoA-ligase
MREFSLPALYEVPTDGNLTDLIRRNATQHPEVAVMARKVAGSWVDVTAARFLAEVRAAAKGLIAAGVRPGDRVALMSRTRYEWVQLDFAIWSAGGVTVPVYETSSPEQVQWILGDSGAVAVIVESEAHAAAVESVRAALPGLRHVWRIEGDGIAQLTAAGAEIPDATVDEHSASAKADDPATIVYTSGTTGRPKGCVLTHRAFFAECGNLVERLKPLFRTGDSSVLLFLPAAHVFGRMVEVAAVMAPIRLGCVPDVSNLTDELASFRPTLILGVPRVFEKVYNAARAKAQADGKGRIFDKAAATAIEYSRAIGTGKGAPFGLRLRHKVFDRLVYGKLRAVLGGRGEFAVSGGAPLGERLGHFYRGIGFTVLEGYGLTESCAATAFNPWDRQKIGTVGQPLPGSVVRIADDGEVLLHGEQIFTGYWNNEAATAEALADGWFHTGDIGTLDEDGYLSITGRKKEILVTAGGKNVAPAVIEDRIRAHALVAECMVVGDGRPFVGALVTIDEEFLARWAADHGKPAGSTAASLREDADLLAEVQRAVDEGNAAVSKAESVRKFRVLSSQFTEEAGHITPSLKLKRNVVAKDFADEIEAIYRS
>CP029188.1|AWI28041.1|916837_918490_-|cholesterol-oxidase
MLRTMTPNLTRRHLLGLGALQTAAALGLTRIGPVPAARAATTAPASRAAAADHTPALVIGSGYGAAVTALRLGEAGIPTLVLEMGRLWDTPGPDGKVFCSTRAPDHRSMWFRTRTEAPLAQFLWLDVVNKDISPYPGVLDRVRFDGMSVYVGRGVGGGSLVNGGMAVTPQRAYFSEMLPTVDAGAMYDRYFPLARRMLGVNTVDPAWFESTEWYRFSRISRKHAANAGLRTVFVPNVYDFPYMQREAAGQAVRSALAGEVIYGNNHGKRSLDRTYLAAALGTGNVTVDTLHRARALRAQPDGTYVVTADRIDTAGRVVATREICCTRLFLGAGSLGSTELLLRARESGTLPDLSEHIGTGWGANGNVMTARANHLWDTVGAHQATMPVMGIDDWSNTANPVFAEIAPLPMGFEHWISLYLAITRNPERGTLTYHAGTDTMRLDWTPEQSKVSGDAARKLFDRINLRNATIYRYDLFGGNRPVADDFTYHPLGGCVLGRATDEYGRVRGAPGVYVTDGALVPGSIGVNPFLTITALAERNIERVLAEDYRR
>CP029188.1|AWI32890.1|918795_919938_-|alpha-(1-2)-phosphatidylinositol-mannosyltransferase
MDKTLIVTNDFPPRPGGIQAFLHNMALRLDPEHIVVYASTWKRGREGAEATAAFDAEQPFPVVRDRTTMLLPTPRVTRRAVGLLREHGCTSVWFGAAAPLGLMAPALRRAGARRLVATTHGHEAGWAQLPGSRRLLRRIGEGTDTITYLGEYTRSRIAAALTPGAAGRMVQLPPGVDEKTFHPDSGGEAVRERLGLTDRPVVVCVSRLVPRKGQDTLIRAMPAILARVPDAVLLIVGGGPYETDLRKLAGTTGVAESVRFTGAVPWEELPAHYGAGDVFAMPCRTRRGGLDVEGLGIVYLEASATGLPVVAGDSGGAPDAVLDGETGWVVRGGSPEETAERVAALLLDPELRRRMGERGREWVEERWRWDLLADRLRALL
>CP029188.1|AWI32891.1|920137_921355_+|hypothetical-protein
MTAGAVAAFALTRTLLLLWVLKVLPVRGPDVTSDVAVIYQGWYEVLRTGTYPLDDVTWQYPPAAALAILSPGLVPSLDYVHAFFALALVCDAAVLGLLLYTGRRPGKSVRGAWFWIAGLPLLGPTAYARYDLMVTAVAVAALLAAARRPGVAGALAGFGAMLKVWPVLLLAGVRQGRAWAAAAVTGAALLLVLTASMPGALAFLGFQRDRGTEVESLGALVFHVARHFGWEGQVLLNYGSVEFLGPYVPLVSGVALGLTAAVFGWLAVWRLRAAEFSAATPADAAFTAVLLFTTTSRVISPQYLVWLLGLAAVCLAFRRSRMAAPGLLVLAATGLTFLEFPIWFDKVVASDPLGVAVLAARNGLLVAAALLACRRLWTGTVPPGRRRGGRALPARSGRDRASVGP
>CP029188.1|AWI32892.1|921412_922639_-|hypothetical-protein
MRGAAPVLAGLILAGALLTGGCAGAPGRDTTGREVQRMLDARAAAVLRHDEAGYLSAFDPSARPLRAAGRAEFANLSELPLSSWEYRLTGVRRSGDRATADAELRYRLDGYDASPATAERRLELAERDGRWYITADRPGSGGAQQLWQQGDIEVVRGTHSLVLGVGQDRARLRRIAADADRAVPAVSAAWGGAWAGRVVVTVPGSQAAMGRLLGAPAAEFRGVAAVTTGIAATPGKPGGPAPADRVTVNPEAYGELGDHGRRVVLTHETAHVATRAHTSAATPLWLSEGFADWAAYRGTGRDVRETAPELRRAVLAGDLPGTLPADADFRFGGGERALGRAYEGGLLACELIARRWGEDRLRAFYRAVGAAESRDGAVEAAFAEVLGTSRERFTADWREYLAERLGGR

Crispr_ID: CP029188_4

• CRISPR_ID: CP029188_4
• CRISPR_location: 1187553-1187741
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: csa3

Consensus repeat of CP029188_4

Consensus_repeat	Method
GCCGGGGCACCCACGGGCCCGGC	CRISPRCasFinder

spacers of CP029188_4

>4.1|1187576|35|CP029188|CRISPRCasFinder
AGGACCGCCGGGGGCGCCCACGGGTCCGGCCCGAG
>4.2|1187634|21|CP029188|CRISPRCasFinder
CCGGGGCCGGGCGGCCCCGGT
>4.3|1187678|41|CP029188|CRISPRCasFinder
ACCGTCAGCCCGTGATGTTCGGTGTACGGGTCACGCTCCGG

CRISPR arrays and Neighbor proteins around CP029188_4

CRISPR arrays

The CRISPR arrays of CP029188_4

>merge|CP029188|4|1187553-1187741|CRISPRCasFinder
GCCGGGGCACCCACGGGCCCGGCAGGACCGCCGGGGGCGCCCACGGGTCCGGCCCGAGGCCGGGGCACCCACGGGTCCGGCCCGGGGCCGGGCGGCCCCGGTGCCGGGGCCGCCCGGAGGCCGGGACCGTCAGCCCGTGATGTTCGGTGTACGGGTCACGCTCCGGCCCGCGGCGGCCGCGGACCGGGC

>CP029188|4|4|1187553-1187741|CRISPRCasFinder
GCCGGGGCACCCACGGGCCCGGC	AGGACCGCCGGGGGCGCCCACGGGTCCGGCCCGAG
GCCGGGGCACCCACGGGTCCGGC	CCGGGGCCGGGCGGCCCCGGT
GCCGGGGCCGCCCGGAGGCCGGG	ACCGTCAGCCCGTGATGTTCGGTGTACGGGTCACGCTCCGG
CCCGCGGCGGCCGCGGACCGGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28239.1|1175913_1177104_+|acetyl-CoA-C-acyltransferase	unknown	unknown	gnl|CDD|238383
CP029188.1|AWI28241.1|1178739_1179861_-|sulfite-oxidase	unknown	unknown	gnl|CDD|239028
CP029188.1|AWI28256.1|1193989_1194634_-|GTP-cyclohydrolase-II	unknown	unknown	gnl|CDD|238348
CP029188.1|AWI28242.1|1179985_1180768_-|hypothetical-protein	unknown	unknown	gnl|CDD|313781
CP029188.1|AWI28244.1|1181640_1182054_+|anti-sigma-factor-antagonist	unknown	unknown	gnl|CDD|132914
CP029188.1|AWI28247.1|1185303_1185855_-|DoxX-family-protein	unknown	unknown	gnl|CDD|225168
CP029188.1|AWI28243.1|1180917_1181259_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28254.1|1193171_1193429_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28252.1|1190401_1191352_-|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl|CDD|223646
CP029188.1|AWI28253.1|1191348_1192314_-|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	unknown	unknown	gnl|CDD|270372
CP029188.1|AWI28246.1|1183833_1184994_-|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl|CDD|213364
CP029188.1|AWI32907.1|1195634_1196552_+|deaminase	unknown	unknown	gnl|CDD|224896
CP029188.1|AWI28250.1|1188616_1189468_-|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224042
CP029188.1|AWI28257.1|1194798_1195638_+|creatinine-amidohydrolase	unknown	unknown	gnl|CDD|376872
CP029188.1|AWI28248.1|1186188_1187511_+|hydrolase	unknown	unknown	gnl|CDD|226698
CP029188.1|AWI28255.1|1193425_1193782_-|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl|CDD|238042
CP029188.1|AWI28240.1|1177375_1178659_-|phosphoribosyl-transferase	unknown	unknown	gnl|CDD|224837
CP029188.1|AWI28258.1|1197910_1198858_-|SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
CP029188.1|AWI28251.1|1189505_1190405_-|phosphate-ABC-transporter-permease-PtsA	unknown	unknown	gnl|CDD|223654
CP029188.1|AWI28245.1|1182998_1183739_-|serine/threonine-protein-phosphatase	unknown	unknown	gnl|CDD|223704

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP029188.1|AWI28255.1|1193425_1193782_-|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	4.9e-11	37.8	0.2

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28239.1|1175913_1177104_+|acetyl-CoA-C-acyltransferase	gnl|CDD|238383	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.	6.977e-170
CP029188.1|AWI28241.1|1178739_1179861_-|sulfite-oxidase	gnl|CDD|239028	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). .	1.46369e-108
CP029188.1|AWI28256.1|1193989_1194634_-|GTP-cyclohydrolase-II	gnl|CDD|238348	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (FAPy), an activity that has otherwise been reported for unrelated GTP cyclohydrolases III.	2.82763e-101
CP029188.1|AWI28242.1|1179985_1180768_-|hypothetical-protein	gnl|CDD|313781	pfam10631, DUF2477, Protein of unknown function (DUF2477). This is a family of proteins with no known function. The family is rich in proline residues.	0.00719709
CP029188.1|AWI28244.1|1181640_1182054_+|anti-sigma-factor-antagonist	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	2.34517e-07
CP029188.1|AWI28247.1|1185303_1185855_-|DoxX-family-protein	gnl|CDD|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	6.74358e-10
CP029188.1|AWI28252.1|1190401_1191352_-|phosphate-ABC-transporter-permease-subunit-PstC	gnl|CDD|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.31347e-91
CP029188.1|AWI28253.1|1191348_1192314_-|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein	gnl|CDD|270372	cd13654, PBP2_phosphate_like_2, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.37547e-128
CP029188.1|AWI28246.1|1183833_1184994_-|magnesium-and-cobalt-transport-protein-CorA	gnl|CDD|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.60413e-151
CP029188.1|AWI32907.1|1195634_1196552_+|deaminase	gnl|CDD|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	2.79737e-49
CP029188.1|AWI28250.1|1188616_1189468_-|phosphate-ABC-transporter-ATP-binding-protein	gnl|CDD|224042	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism].	2.07839e-168
CP029188.1|AWI28257.1|1194798_1195638_+|creatinine-amidohydrolase	gnl|CDD|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	3.18924e-75
CP029188.1|AWI28248.1|1186188_1187511_+|hydrolase	gnl|CDD|226698	COG4247, Phy, 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism].	1.4427e-72
CP029188.1|AWI28255.1|1193425_1193782_-|ArsR-family-transcriptional-regulator	gnl|CDD|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.30865e-11
CP029188.1|AWI28240.1|1177375_1178659_-|phosphoribosyl-transferase	gnl|CDD|224837	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only].	3.07374e-77
CP029188.1|AWI28258.1|1197910_1198858_-|SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	0.000548946
CP029188.1|AWI28251.1|1189505_1190405_-|phosphate-ABC-transporter-permease-PtsA	gnl|CDD|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.18721e-77
CP029188.1|AWI28245.1|1182998_1183739_-|serine/threonine-protein-phosphatase	gnl|CDD|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	9.25246e-45

Protein sequences

>CP029188.1|AWI28248.1|1186188_1187511_+|hydrolase
MSRPLPHRPAAAVLGVVLVAAAALPAAAHPPASPAEPTAPALPAVTPTAETPTLYDDEAGGNADADDPAIWRNTADPGRSLVIATAKEGGLRVYDLDARPLQSIAAPGPAGPGDAPGRFNNVDLVHGLRLPSGRADLAVTSDRGHDRLRIHRIDRGRPGGPLTDITDPAAPPIFSRDQDEINEQRTAYGLATWTDRGSGRSYALVSRRASTEIALVELRPTAAGTVTYRTVRTLALPSSFRLPDGTTWTPCGEPGDAPQVEGMVVDPANGMLYAGQEDVGIWRVRADLTGTPRLVDKVREYGVPAAYDEKTEECVAGADPGFGGTHLSADVEGLTLLTEPDGDGYILASSQGDDTFALYDREVDERNEYEGGFRVTAASSALDGAEESDGAAVLDAPLGPKYPKGLLVVQDGHDTPGDGDREATGFTFVDLGAVKKRAGL
>CP029188.1|AWI28247.1|1185303_1185855_-|DoxX-family-protein
MKLPTGRVRHSEGPDGGTAPVAVGAADAGVLLLRLAVGLVLAGHGAQKLFGWFDGPGLDAAGRGFSQLGWDPGVVFAALAGVAELLGGLGLAVGLLTPLSAAACVGVMVDAMAVAPVIDLWSAAGTAFVYPMVLAVGALTVAAVGPLRLSLDARFPWRDGGWVPAGVALVLGLVGAFVVLALR
>CP029188.1|AWI28246.1|1183833_1184994_-|magnesium-and-cobalt-transport-protein-CorA
MSDRRPRATRAGRWPLRAGPARQADPAPEQSMDPRAEHESPEPAPLERSLVDAALYRDGRRMETPASLAEIYHRLPGEPGTMAWIGLFRPSPAQLWEAAEQFGLHELAVEDAIVAHQRPKLERYGKTLFVVLRPARYLDEAEEVDFGEIHVFVGPEFVLTVRHSQAPDLAVVRSRLEADPDLLALGPEAVLYAILDAVVDGYAPVIAGLLHDIDEIETEVFRGDPRVSRRIYELSREVVDFQRATRPLLTIMNGLQAGFQKYRTDEELQRYLRDVADHATTVAERVNGFRQALGDILTVNATLVSQAQNEEMKMLAEAGHAQNNEIKKISSWAAILFAPTLIGTVYGMNFDHMAELDWRFGYPFALALMALVCIGLYLVFKRRNWL
>CP029188.1|AWI28245.1|1182998_1183739_-|serine/threonine-protein-phosphatase
MAYIAVTALSDAGLVREHNEDSLVAGPWTLCGTVTENPQTLLFPLGTPLVAAVADGLGGQPAGEVASALVVRQLAALGPGLDGEDAIGEALSMCNRMVYSAADGNPDLLTMGTTVAGVVVLPGSVTVFNVGDSKVYEAAEDGLRQLSVDDSPPPRPGRRVTTAVTQTLGGGPSYTPVTPHVTTTSLSPGGRCLVCTDGLTDPVPDEELHGLLRVHEDGRAAYELWKAAIEAGGPDNITLALVRIGE
>CP029188.1|AWI28244.1|1181640_1182054_+|anti-sigma-factor-antagonist
MGVAESVAVHSDSRDPGPCGGPGRWNDPPAISYCRTIDRTLVIALRGVVDRENLYPLRLMLTVAVKSGYSRLVIDCAEITKCDHELLELFLSWKRHDRNIVLVHPSGPVHDLIAAEISRRLFLCALSVKHALNLMEG
>CP029188.1|AWI28243.1|1180917_1181259_-|hypothetical-protein
MPRHRGPGEFSPTPLYGQLVSEWRARGAMLPGARDPQWDRLASLHAFEEDTRRTLRMLRLERDPVPPLPDAGARVPAGDAGRHPAVPGGAAHLPGPRWTAPGTSRPGGHDRES
>CP029188.1|AWI28242.1|1179985_1180768_-|hypothetical-protein
MRLAQSALDEAQADRTRMLAAFAVVVGDDGTVAGMMGLPEREVRVARRTVGREGARTVAANLLTRMSDQSSDMGGEPAQTASENPASFPRAEPDAVPVPAPPVSPYTTAQPLHPTGSYSIPAVEEQTWPEPVQPVPSAQPAGPVWSPSMDSVLVWSWHSGLDLQVVANELGLELRTVLQRVQTLAAEGQLVKADQVAPRDYMNGSRDHSVSSREYATGSRDYATGSREYSGRHRRHEEPMEFSDTGSFGLGGLFSSASWS
>CP029188.1|AWI28241.1|1178739_1179861_-|sulfite-oxidase
MDRDLTAVSVPGRLAGPGEGISLEELALAARNHGMPLEALRYALTPPGLHYVLVHYDIPAAEAADWRVSVGGLVRTPLRLDLADLRAFPPVTLRVTMECAGNGRARLTPRPVSQPWLVEAVGTAEWTGVPLRVLLREAGVGPGAVEAVFTGADHGVERGVEQDYRRSLPLGVALGGDPEVLVAYAMNGGPLPPQHGHPVRLVVPGWYGMAHVKWLCDISLTGTPFTGFQQAVAYRYRRSADDPGEPVTRIEPRALMIPPGFPDFMSRTRVLRPGRTGLEGRAWSGHAPVARVEVSTDDGRTWHDAALDAPEGDAWAWRHWHTAWTATPGSHVLAARATDAEGRTQPLDQPWNRGGFGNNLVQRIPVVCLPDGA
>CP029188.1|AWI28240.1|1177375_1178659_-|phosphoribosyl-transferase
MLFTDRVDAGQRLAGALGHLRGADPVVLGLPRGGVPVAYQVARALGAPLDVIVVRKLGVPYHRELGFGAIGEGGVRVISDDIVRRGHVSEKDVASVERAEAAELTRQAQRFSADRPRVGIEGRTVVVVDDGIATGATAAAACEVVRAQGAARVVLAVPVAPPDAVSWLRTLADEVVCLSTPRAFSAVGEWYRDFSQTPDEEVVALLAQSAADPPEAVKSEDVEVEAGGVRLAGELALPEGTAAVVMFAHGSGSSRHSPRNRSVATALNAAGLGTLLFDLLTGPEAADRRNVFDIEVLADRLAGATRWLRTRTAGPLGYFGASTGAAAALWAASSAGPEVGAVVSRGGRPDLAGSRLPGVRAPTLLIVGGRDTTVLDLNRQAESALRCECRLVVVPGATHLFEEPGALEEVSALARDWFTLHLVSRRP
>CP029188.1|AWI28239.1|1175913_1177104_+|acetyl-CoA-C-acyltransferase
MTDRLRDVYVVDAVRTPVGKYGGALAGVRPDDLAAGVLGALVSRTPALDPARIDDVFFGDANGAGEDNRDVARMAVLLAGLPVTVPGTTVNRLCGSGMEAVVQAARAIAVGDASVAVAGGVESMSRAPWVLQKPERGFPAAHQQLHSTTLGWRMVNPRMPQEWTVGLGEGAELLADRYGIGRDEQDAFALASHRNAARAWAGGLYDGEVVPVDGVEPTRDECVRDTTSTEALAALKPVFRKDGTVTAGNSSPLSDGAAALLLVDEDGLRATGREPLARIGASAVTGIEPQYFGAGPVEAARRALKKAGREFGELHTVELNEAFAAQALACLRQWPDLDPARVNPRGGAIAIGHPLGASGARITGAVAHQLAAAGAGTGLATLCIGVGQGLALVLER
>CP029188.1|AWI28250.1|1188616_1189468_-|phosphate-ABC-transporter-ATP-binding-protein
MNPPPGHGPGGTPPPRPAHLAAPPPSETVFEVGGLSVFYGDHEAVRDVNMNIGARQITAMIGPSGCGKSTVLRCFNRMNDLLPDARVVGKVRYHNEDLYSRDVDPIEVRRRIGMVFQKPNPFPKSIYDNIAYGPRVGGFKGNLDDLVEETLTHAALWDEVKDKLKTSALALSGGQQQRLCIARTIAVEPEVILMDEPCSSLDPIATAKIEDLMERLAQQFTIVVVTHNMQQAARVSERTAFFSSEIDRDGVRHGRLIELDETGTLFSNPSDQRTEDYISGRFG
>CP029188.1|AWI28251.1|1189505_1190405_-|phosphate-ABC-transporter-permease-PtsA
MIPTAVTADPPEAPRLKGRRTPLREQFFRLSLWASLAIGVLFLVGLLTYVVVEGWPRLNSKLWTNFPDIIDPSNAGAQSAITGTIWVISFTALYCLPTGVLTAIYLEEYADRDRWWNRAVEINIQNLAAVPSIVYGILGLGVISRGLGFGQTVLTASLTLSLLVLPIVIISSREAIRAVPQSIRQASLSLGATRWQTIWRQVLPAAVPGMATGSILALSRAIGEAAPLLLLGGLTFITFNPTGVQSQFTVLPIQIFNWISQSRAEFTALASAAIVVLLVILLVMNSLAIWLRNHFTHRW
>CP029188.1|AWI28252.1|1190401_1191352_-|phosphate-ABC-transporter-permease-subunit-PstC
MTPRTRRRRAAPGSPGFLRRSQSRWGERAVRVLLVAAALVSVLTTVGIVVALIPPVVDFFGKVDFGKFITGTDWSPLFEPPQFGVLPLVTATLVVTVIALLVAVPLGLGAAVYLSEYASHRVRGIFKPVLEVLAGIPTVVYGFFALRAITPLLQRYWPGGDPPQVFNALSAGFVMGIMIIPTIASLAEDSMAAVPRSLRDGAYALGSSRMQVSTRVVFPAALSGIVAAVVLGVSRAIGETMIVAIAAGGRPNLTFNPLEGMQTMTAFIAAAGIGDLPTGSTGYQTIFAVGLLLFAITLVMNLISIRLVRRYREVYE
>CP029188.1|AWI28253.1|1191348_1192314_-|phosphate-ABC-transporter-substrate-binding-protein-PstS-family-protein
MNIPRSPRRAAARALLAAAVVVAAGACGGADAGSGDGVSGTIKVDGSSTVAPLSTAAAQLFQQHNPGVRITVGTSGTGGGFEKFCNGETDIADASRQITAEEQAHCAEKGVTYEELRIANDGLAVVVSKDNDFADCLTVEQLRRIWEPGSRIDNWNQVDPAFPDVELELFGPGTDSGTFDYFTQAVNGKEGRSRTDYSPSEDDNVTVQGVSGSKGGMGYFGLSYYEENRDKLRLLEIDGGNGCVAPTQTTVQNGTYRPLSRPLLIYPSAAALDRREVEEFVEYYVDNNADIARAAQFVPLSPGQEAELRQDLTRLRQEHTA
>CP029188.1|AWI28254.1|1193171_1193429_-|hypothetical-protein
MNSTDWAGAIGAAGVFLFLVVAVRQVAATWRARMLATREDQYKRLAAKYAELLEDNVELHRRTLEELTVARASIASMEKMMRSVE
>CP029188.1|AWI28255.1|1193425_1193782_-|ArsR-family-transcriptional-regulator
MTGGTAPHPTGDELLRILAALGNPHRLRIVAALVEGGRDYVSSLARELGIGRPLLHMHLQRLEAAGLVIGSLEHAADGKAVKYFEVTPFAVALTPEAVVRAAATITQEEKETVKETAK
>CP029188.1|AWI28256.1|1193989_1194634_-|GTP-cyclohydrolase-II
MNARVKNTERMATVQLSTTYGVFRAIGYLDRIRGDEQIALAYGDITGEDVLARLHSECLTGDAFGSRHCECGDQLSAALRAIVSEGRGVLVYLQGHEGRGIGLLAKLQAMQLQAEGMDTVEANLALGLPVDSRDYGVAADMLHDLGVRSVRLMSNNPLKREALLRHGIEVSEQVPLLTQPREENIVYLRAKRERMGHLLPHLDRPLLDRTADQS
>CP029188.1|AWI28257.1|1194798_1195638_+|creatinine-amidohydrolase
MTDPQERPLQEGLLQEGLLQEGPPEPGPRPPEPGPLPWDTTGDAGVRRADVAILPIGSFEQHGPYLPLATDTLIACAIAREVAAAYPVHRLPPLTFSCSHEHSAWPGTVSISATTLCAVVRDIAESLRRSGVRNLVLVNGHGGNYVLRNVVQESLGTGTRMALFPGSADWGAARERAGVETPSHSDMHAGEVETSILLHDCPELVRPGHMTSDFLADDREHLLTVGLRPYTDTGVVGRPSLASAEKGKELLASLTGSFGGYFSLLVPERSAGPAGEGAR
>CP029188.1|AWI32907.1|1195634_1196552_+|deaminase
MNGLPTGRPAGALDARGAWERLLAIRTGAQAEAAGLRRDGHGRYRWRDGASAGADLLAERYLPLCLAGPRFTFAQLGQSLDGFIATRKGDADYVTGPEDREHLHRLRALSDAVVVGAGTAVADDPRLTVRACPGPHPVRVVLDPHGRVPPTRGLFTDGAAPTLWVVGAGSGPGRDLADGSAAAGVDVLVLPDTAAFAPRRLVHELARRGLGRVLVEGGGVTVSRFLHEGALDRLYVTVAPVLIGDGVPGLAFPGPDVMRDALRPPVRRAFLGEDTLFELDLRAARSGEPLDGEHGGTGKGGGEGQ
>CP029188.1|AWI28258.1|1197910_1198858_-|SAM-dependent-methyltransferase
MSTTDVARFAPEWLALREAADAAARAPELLEPLRLHLPGTAPADRHGPAAPLVIRDLGCGTGSMGRWLAPRLDGRQHWILHDHDPRLLELASARLPRTAADGSPVTVATERGDVSRLTAERLRGTSLVTASALLDLLTREELDGLVAACAGAGCPALLALSVVGRVDLAPSDPMDDEITDAFNAHQRREEHGRRLLGPDAVAAASVAFARRGMTVRVQTSPWRLGAWTGTPTGAAADPGTPGGDGDAPAGRLSRRLTAEWLRGWVGAAREQRPDLATRSGAYLRRRLEACEAGELRVVVHHSDVLALPRRDGGTP

Crispr_ID: CP029188_5

• CRISPR_ID: CP029188_5
• CRISPR_location: 1318487-1319613
• CRISPR_type: TypeI-E
• Repeat_type: NA
• Spacer_info: 18 spacers
• Cas_protein_info: cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2

Consensus repeat of CP029188_5

Consensus_repeat	Method
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CRISPRCasFinder
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CRT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	PILER-CR

spacers of CP029188_5

>5.1|1318516|32|CP029188|CRISPRCasFinder,CRT
GGGGTCACCGTCGACCTCGCCATCCTCGAGCG
>5.2|1318577|32|CP029188|CRISPRCasFinder,CRT
TCTGGGAGCACGCCGTGAAGCTCGCGGCGGAC
>5.3|1318638|32|CP029188|CRISPRCasFinder,CRT
CCGAGGCTATATCGCGCCTTCTCCGCGATCGT
>5.4|1318699|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CCGACGCCGTTCCCGACCTCGCAGGGCATGAC
>5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CGTTCCACGTCTGCAGGCCGTGCATGCGGCGG
>5.6|1318821|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CGCCCGGTCTGTGGTGAGGACAACGGGTTCGT
>5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
ATGGCCGTGCCGATCGTGGCGCGCGCGGAGGA
>5.8|1318943|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GCGGTGTTCGGCTTGCACGCCTTGTAGACGTG
>5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GACCGGCCCTTCGTGTGGACCGTCCGCAACTG
>5.10|1319065|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GGCCCCTCTCTTCCGGGAGTCCTCCCATGAAC
>5.11|1319126|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GTCCGGGAGTTCGGAACTCTGGGACTCTGTGC
>5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GTGGCCTCAGCGATGTACGTCGCGTTCGCGGC
>5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
TCGACAAGGGCCCAGCCCTTCCTGGCGATGTG
>5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
TATGCCTCGTCCTCGGTCCAGTCGGACCGTGA
>5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GCCGCCATGCGGGAGCAGGGCGACCTCCTCGA
>5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CGGGCCGTGAAGGTCGGCGTGGGCGCGGTCGG
>5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CCGTCCCAGGTGCTGCTCGAACTGCACCGTGT
>5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GCCGCGTCGAACAAGTCGATCGTGTCGACGGG

CRISPR arrays and Neighbor proteins around CP029188_5

CRISPR arrays

The CRISPR arrays of CP029188_5

>merge|CP029188|5|1318487-1319613|CRISPRCasFinder,CRT,PILER-CR
CGGCACACCGCCGCGTCGACGGGGAGGACGGGGTCACCGTCGACCTCGCCATCCTCGAGCGCGGAACACCCCCACCTCGGCGTGGAGGACTCTGGGAGCACGCCGTGAAGCTCGCGGCGGACCGGAACACCCCCGCGTCGGCGGGGAGAACCCGAGGCTATATCGCGCCTTCTCCGCGATCGTCGGAACACCCCCGCGTCGGCGGGGAGGACCCGACGCCGTTCCCGACCTCGCAGGGCATGACCGGAACACCCCCGCGTCGGCGGGGAGGACCGTTCCACGTCTGCAGGCCGTGCATGCGGCGGCGGAACACCCCCGCGTCGGCGGGGAGGACCGCCCGGTCTGTGGTGAGGACAACGGGTTCGTCGGAACACCCCCGCGTCGGCGGGGAGGACATGGCCGTGCCGATCGTGGCGCGCGCGGAGGACGGAATACCCCCGCGTCGGCGGGGAGGACGCGGTGTTCGGCTTGCACGCCTTGTAGACGTGCGGAACACCCCCGCGTCGGCGGGGAGGACGACCGGCCCTTCGTGTGGACCGTCCGCAACTGCGGAACACCCCCGCGTCGGCGGGGAGGACGGCCCCTCTCTTCCGGGAGTCCTCCCATGAACCGGAACACCCCCGCGTCGGCGGGGAGGACGTCCGGGAGTTCGGAACTCTGGGACTCTGTGCCGGAACACCCCCGCGTCGGCGGGGAGGACGTGGCCTCAGCGATGTACGTCGCGTTCGCGGCCGGAACACCCCCGCGTCGGCGGGGAGGACTCGACAAGGGCCCAGCCCTTCCTGGCGATGTGCGGAACACCCCCGCGTCGGCGGGGAGGACTATGCCTCGTCCTCGGTCCAGTCGGACCGTGACGGAACACCCCCGCGTCGGCGGGGAGGACGCCGCCATGCGGGAGCAGGGCGACCTCCTCGACGGAACACCCCCGCGTCGGCGGGGAGGACCGGGCCGTGAAGGTCGGCGTGGGCGCGGTCGGCGGAACACCCCCGCGTCGGCGGGGAGGACCCGTCCCAGGTGCTGCTCGAACTGCACCGTGTCGGAACACCCCCGCGTCGGCGGGGAGGACGCCGCGTCGAACAAGTCGATCGTGTCGACGGGCGGAACACCCCCGCGTCGGCGGGGAGGAC

>CP029188|5|5|1318487-1319613|CRISPRCasFinder
CGGCACACCGCCGCGTCGACGGGGAGGAC	GGGGTCACCGTCGACCTCGCCATCCTCGAGCG
CGGAACACCCCCACCTCGGCGTGGAGGAC	TCTGGGAGCACGCCGTGAAGCTCGCGGCGGAC
CGGAACACCCCCGCGTCGGCGGGGAGAAC	CCGAGGCTATATCGCGCCTTCTCCGCGATCGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CCGACGCCGTTCCCGACCTCGCAGGGCATGAC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGTTCCACGTCTGCAGGCCGTGCATGCGGCGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGCCCGGTCTGTGGTGAGGACAACGGGTTCGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	ATGGCCGTGCCGATCGTGGCGCGCGCGGAGGA
CGGAATACCCCCGCGTCGGCGGGGAGGAC	GCGGTGTTCGGCTTGCACGCCTTGTAGACGTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GACCGGCCCTTCGTGTGGACCGTCCGCAACTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GGCCCCTCTCTTCCGGGAGTCCTCCCATGAAC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GTCCGGGAGTTCGGAACTCTGGGACTCTGTGC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GTGGCCTCAGCGATGTACGTCGCGTTCGCGGC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	TCGACAAGGGCCCAGCCCTTCCTGGCGATGTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	TATGCCTCGTCCTCGGTCCAGTCGGACCGTGA
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GCCGCCATGCGGGAGCAGGGCGACCTCCTCGA
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGGGCCGTGAAGGTCGGCGTGGGCGCGGTCGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CCGTCCCAGGTGCTGCTCGAACTGCACCGTGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GCCGCGTCGAACAAGTCGATCGTGTCGACGGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC

>CP029188|5|1|1318487-1319613|CRT
CGGCACACCGCCGCGTCGACGGGGAGGAC	GGGGTCACCGTCGACCTCGCCATCCTCGAGCG
CGGAACACCCCCACCTCGGCGTGGAGGAC	TCTGGGAGCACGCCGTGAAGCTCGCGGCGGAC
CGGAACACCCCCGCGTCGGCGGGGAGAAC	CCGAGGCTATATCGCGCCTTCTCCGCGATCGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CCGACGCCGTTCCCGACCTCGCAGGGCATGAC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGTTCCACGTCTGCAGGCCGTGCATGCGGCGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGCCCGGTCTGTGGTGAGGACAACGGGTTCGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	ATGGCCGTGCCGATCGTGGCGCGCGCGGAGGA
CGGAATACCCCCGCGTCGGCGGGGAGGAC	GCGGTGTTCGGCTTGCACGCCTTGTAGACGTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GACCGGCCCTTCGTGTGGACCGTCCGCAACTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GGCCCCTCTCTTCCGGGAGTCCTCCCATGAAC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GTCCGGGAGTTCGGAACTCTGGGACTCTGTGC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GTGGCCTCAGCGATGTACGTCGCGTTCGCGGC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	TCGACAAGGGCCCAGCCCTTCCTGGCGATGTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	TATGCCTCGTCCTCGGTCCAGTCGGACCGTGA
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GCCGCCATGCGGGAGCAGGGCGACCTCCTCGA
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGGGCCGTGAAGGTCGGCGTGGGCGCGGTCGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CCGTCCCAGGTGCTGCTCGAACTGCACCGTGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GCCGCGTCGAACAAGTCGATCGTGTCGACGGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC

>CP029188|5|1|1318670-1319613|PILER-CR
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CCGACGCCGTTCCCGACCTCGCAGGGCATGAC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGTTCCACGTCTGCAGGCCGTGCATGCGGCGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGCCCGGTCTGTGGTGAGGACAACGGGTTCGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	ATGGCCGTGCCGATCGTGGCGCGCGCGGAGGA
CGGAATACCCCCGCGTCGGCGGGGAGGAC	GCGGTGTTCGGCTTGCACGCCTTGTAGACGTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GACCGGCCCTTCGTGTGGACCGTCCGCAACTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GGCCCCTCTCTTCCGGGAGTCCTCCCATGAAC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GTCCGGGAGTTCGGAACTCTGGGACTCTGTGC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GTGGCCTCAGCGATGTACGTCGCGTTCGCGGC
CGGAACACCCCCGCGTCGGCGGGGAGGAC	TCGACAAGGGCCCAGCCCTTCCTGGCGATGTG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	TATGCCTCGTCCTCGGTCCAGTCGGACCGTGA
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GCCGCCATGCGGGAGCAGGGCGACCTCCTCGA
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CGGGCCGTGAAGGTCGGCGTGGGCGCGGTCGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC	CCGTCCCAGGTGCTGCTCGAACTGCACCGTGT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	GCCGCGTCGAACAAGTCGATCGTGTCGACGGG
CGGAACACCCCCGCGTCGGCGGGGAGGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28350.1|1310966_1311830_-|hypothetical-protein	unknown	unknown	gnl|CDD|223021
CP029188.1|AWI28362.1|1331001_1331574_+|phosphohydrolase	unknown	unknown	gnl|CDD|366867
CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl|CDD|378050
CP029188.1|AWI32919.1|1308833_1309028_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl|CDD|182031
CP029188.1|AWI32920.1|1315911_1316121_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl|CDD|187862
CP029188.1|AWI28351.1|1312299_1312647_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28349.1|1309908_1310658_-|hypothetical-protein	unknown	unknown	gnl|CDD|237537
CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
CP029188.1|AWI28353.1|1313262_1314549_-|histidine-kinase	unknown	unknown	gnl|CDD|369272
CP029188.1|AWI28361.1|1330538_1331000_+|transcriptional-regulator	unknown	unknown	gnl|CDD|153418
CP029188.1|AWI28347.1|1308215_1308650_+|protein-phosphatase	unknown	unknown	gnl|CDD|350354
CP029188.1|AWI28352.1|1312906_1313266_-|anti-anti-sigma-factor	unknown	unknown	gnl|CDD|132914
CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|378244
CP029188.1|AWI28348.1|1309168_1309690_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl|CDD|187860
CP029188.1|AWI28354.1|1314548_1315352_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl|CDD|273842
CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	5.2e-96	315.6	0.0
CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	8.8e-33	107.1	0.0
CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	3.3e-22	74.1	5.8
CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	4.6e-97	320.5	0.0
CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	1.1e-69	230.3	3.5
CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	2.3e-49	162.4	0.3
CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	7.6e-50	164.6	0.0
CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	7.5e-41	135.3	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28350.1|1310966_1311830_-|hypothetical-protein	gnl|CDD|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	5.08854e-07
CP029188.1|AWI28362.1|1331001_1331574_+|phosphohydrolase	gnl|CDD|366867	pfam01966, HD, HD domain. HD domains are metal dependent phosphohydrolases.	9.48837e-10
CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.93808e-84
CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl|CDD|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	3.09924e-46
CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl|CDD|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.65295e-15
CP029188.1|AWI28354.1|1314548_1315352_-|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.80796e-32
CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.19263e-119
CP029188.1|AWI28353.1|1313262_1314549_-|histidine-kinase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	2.77194e-51
CP029188.1|AWI28361.1|1330538_1331000_+|transcriptional-regulator	gnl|CDD|153418	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.	8.33406e-12
CP029188.1|AWI28347.1|1308215_1308650_+|protein-phosphatase	gnl|CDD|350354	cd14504, DUSP23, dual specificity phosphatase 23. Dual specificity phosphatase 23 (DUSP23), also known as VH1-like phosphatase Z (VHZ) or low molecular mass dual specificity phosphatase 3 (LDP-3), functions as a protein-serine/threonine phosphatase (EC 3.1.3.16) and a protein-tyrosine-phosphatase (EC 3.1.3.48). It deactivates its MAPK substrates by dephosphorylating the threonine and tyrosine residues in the conserved Thr-Xaa-Tyr motif residing in their activation sites. DUSP23 is an atypical DUSP; it contains the catalytic dual specificity phosphatase domain but lacks the N-terminal Cdc25/rhodanese-like domain that is present in typical DUSPs or MKPs. It is able to enhance activation of JNK and p38 MAPK, and has been shown to dephosphorylate p44-ERK1 (MAPK3) in vitro. It has been associated with cell growth and human primary cancers. It has also been identified as a cell-cell adhesion regulatory protein; it promotes the dephosphorylation of beta-catenin at Tyr 142 and enhances the interaction between alpha- and beta-catenin.	2.73728e-09
CP029188.1|AWI28352.1|1312906_1313266_-|anti-anti-sigma-factor	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.39348e-23
CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.15533e-38
CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.73786e-122
CP029188.1|AWI28349.1|1309908_1310658_-|hypothetical-protein	gnl|CDD|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.000769077
CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl|CDD|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.84421e-49
CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	2.90063e-57

Protein sequences

>CP029188.1|AWI32920.1|1315911_1316121_+|hypothetical-protein
MTDGAAIDVADDRILAKQIIRGLMVIREHLGCSLHEALEVFAARYEVLRVERPDDFVCSRDEYGVGFYS
>CP029188.1|AWI28354.1|1314548_1315352_-|alpha/beta-hydrolase
MDIARRNNVSIIGNPDGRTVVLAHGFGCDQNMWRLTVPALVEKYRVVLFDYVGSGRSDAAAFSERRYASLDGYALDVVEVCEALDVRDAVFVGHSVSAMVGVLAADRAPERLGALVMVAPSPRYIDDDGYRGGFSADDIDELLASLESNYLGWSAAMAPVIMGNEDRPELGEELRNSFCATDPDMARVFARTTFLSDSRDDLKNVRVPTLVLECTQDAVAPREVGAFVHQAIPSSTLLTLDATGHCPHLSAPDATNDAILSFLAGLR
>CP029188.1|AWI28353.1|1313262_1314549_-|histidine-kinase
MCRTERHPDPAAGDRGASGAAFAALLEDSAEELYESAPCGYLSTLMDGTIAKINATLLGWLGLEREAVVGRMRFTDLLTVGGKLYHETHFAPLLRMQGEISGIALEIKQTGGARMPVLVSSAVKHADTGEPLLIRTTVFDARDRRAYEEELLRGRKAAEEARKQAEADRARLQHALAVLQQSLLPDQLPPVPGMEVAAHYHTAHPDRLGGDFYDVFSLDGKRFGFFLGDVCGKGPQAAAITSLTRYTLRAAALHDPDPVSALTTLNKVLHERYSAGGDPRYCTAVFGTLEPDAATGRVAVHLASGGHPPAVVVRADGTAEFLPTPGGLLVGILPSARFGTATAVLTPGDTLLLYTDGLTEARTGEDRAGRYGDEALLAFAAAHAGRTPPALMEALAGLLNSFGDGLDDDTALLALGVPALDPRTGSSP
>CP029188.1|AWI28352.1|1312906_1313266_-|anti-anti-sigma-factor
MSPLKITARDAAIGPVVEVFGELDHSSAIRLRELIPTIELRPGQRLVMDLSGMEFCDSSGITALIAAHHHAQAARADLALAAVPAHTLRILRVVGLDQILPILPAAASDDGGSETGPVA
>CP029188.1|AWI28351.1|1312299_1312647_-|hypothetical-protein
MPVNEPYNNPYPPQREGYRPNRDGAGANRAALVIHTIADIAAGFLILWILLYLLGANEGNVFVGFVHDVSDWLAGWSQDIFTMDSEGLRVILNYGLPAVIYLLLGHGIAARVRRL
>CP029188.1|AWI28350.1|1310966_1311830_-|hypothetical-protein
MAGRDVRDRAAHPGSAPYLHAGRDGAGSPDGFAAYGTDTFDAFATSTADGTAGTGSPDGPGADGSEVDAAVSGAATGQGRAARRRQLARWKKHRRRAAAATAVALVGGGLTIAALPTGKPSTGPALASAPPEPGTGATPSGSVPPGAVPIGTPDSAAAPRPGADRPAGTGAHRRGAEAAQPRAEAPAETAVTGAAGSTRMAGRSATAVPDQQTAPLPRDDQRTAPSSAPRAPEQSAGGQAPAAPAPGTTSPPPAAEPPGPATPPAGLLPVPPGGAPAQVCVVGLCIG
>CP029188.1|AWI28349.1|1309908_1310658_-|hypothetical-protein
MTTGYQARLRRIGRWWAVDVPELAIHTQCRTLDEAEDMAREAIAEALGTVPDTVGVELVVPEFAPLLHSVTEARRRRAAADSAERQALSDAVRTLVEDLCVSQGDACRLLGMSHQTVARLSPARGSADARPWRLDGRAAAQRSLAPGSGTRAGDGVDIGGSGPGDTGDGGTGGTGGPGAAGGRGGGRHAGAADRVAGGGDEADDAHRTQRAPERRPGGSSHPGDAARANGQRPAASAVRPRWAIAEDEP
>CP029188.1|AWI28348.1|1309168_1309690_-|hypothetical-protein
MTAQSPAERPRAAPAAAAGRGDYTGAVYGSLLAASVVVGAGALGSFPRLELILLLLGTGVVFWAAHVFARFFGQRIAYVSPGGPEIRRICVSERPILEAAVPPALAVAASPLLGLDLEGTVWLALGVAVAGQVGWAVVAAFRAGASGRIMLAAGAVNLVLGLLIVAFKVALKQ
>CP029188.1|AWI32919.1|1308833_1309028_+|hypothetical-protein
MPKPPSCPQCPSRPPLWKDTTRTAPGSEDRWRWYCTYCTRRWAPTPEHRLRFTVFPRVPQRPPR
>CP029188.1|AWI28347.1|1308215_1308650_+|protein-phosphatase
MTEPWTQTATGVLRLPSGRLMRGRGLRHPLPDGPTPTYALYLLDKRPPDVPWDAEWLRWPDFRLPRDRDRAQTALGEVWARAATERVEVACGGGRGRTGTALACLAVIDGVPAAAAVAFVRRHYDRHAVETPWQRRYVRRFPLP
>CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'
MSSVSWGFPDQSLWGKSRGLDPELPPYPLVRHLIDTAAMALHIWDVYLSGNQRRSISQGMGFEEEPERARAVVALCAGLHDIGKVSGFQFCSHRARAHLSATFLSEQGALGNERIAHDVAGMRAVSAVLGALGFEGDADEMAKAAERIAEIVGGHHGRFHRNEFHGDPPFLGGPAWARQREAHAVAVHELLGSPQAPGEFKAPAAALVTGVVILADWLMSQEEYLCRRQQVLEPSLQAHFTQSKADAATLLAEAGLTPVDLERRGFSETYGINGQPNPLQRSVMDELPSVVRDATRGGILLVTAAPGDGKSETALEAERVLSGAFGTRGFAFLLPTMATSDQMYSRIASTLQRQAGQDAGLTLTHSMAWLSSAYADHDLVSGQRISAGDGDEEEGETGGRCEADMRPRQWLRGAKRPLLAQFTVGTVDQALMSVLPVRHNALRMLALSGKTFIIDEAHAYDPYMQVLLGRLLNWLGWYGVPVVLLSATLPRSISDRLIKEYLQGVGHGRRSLRGRTFPAPYPGWLYVDGASARATEISEPRQLEQAAARSMELRVRVEPVVHGERPGSRDRLTVIERLLEPVVRERGGCALVVCNTVGDAQETYMRLRERFDHRSHAEGGCVQLLHARFPGDIRESRTAGVTDGMGRRGPRPERRIVVATQVVEQSLDLDADIVISDLAPLALLLQRAGRCWRHENWWVQHGRPCGRGRPGWAREPQLVVLDPLTYGGGVPRQWGEVYPKFLLTETSKRLGAISAATISIPGDVQDLVEAVHGDRSGLFDWENPDPRRSAAWNAYRGKELAEQGVASVVAIPAARSVRNLHDLHHLPGSEDEWELSTRLGADSVRLLCAYEQENGRLTLDIAGEELLPDPGRGERVPPAAVRAVMRRTIPVRADWFGAEDVEALSPPLSWTDHPMLSDLLVLHQRVRDGNPQAVPVGGKSVILDGDLGLVRR
>CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSGGFDLRDEPWIPVRLLTGESARFGFRRLFARAHEIEDLELPVPPAASGLLRILAAMTARIAQNAGIRLDDADTAEEIEEWDALRDRVLARGRFDSVAVNAYFDKEIPEGRFDLFDDSRPFLQDPRLVRECIDTKGAPNPSGVNKLVLGRPTGVNGAVLFGHFTDTNPVPVPAAEAVWHLIAQLYYGPSGQCTPRRITEHRAGSGDAAPLRKSVSYFPWAPTLFASLVLAVPSPRIAVETEGRDACPWEGELPDPLQPLASMTWPGRMLTGRFRHAVLLVPSADRRSVVDAYITWSTHEPPREVRDPFLILDRRKDGGFHAREADGARALWRDVDALLLADSLQDALRPPALEGLPKRLLATLRVRAYGFEQDGQQKDSVWFQATTPPVLRWQEEAEPAMAHHLARCHRVGEDAGRRLEFAAKVAWKIATDVNTDVSPRAKVKIDHRKPGPWASAALTRYWPAAEKQFWRLAATDRLNSPIEQPFVDAALAALDEAIGQANRADIRVARASSRARAIIRGLLLPPR
>CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MCESKKAQADLRTGLALPVERCNYLHRYLVPRLSERLHPDAKRAHYAVAALIAARPRSAREATAHEAKGARALADWHLRPNLGAALAEGARKGVLKPDSAEGDLHLMARQSSEAIHPRLPALTRHLLTGGVAIDWAVMLEDLSWWNRKRDIIATRWLESYFRVSDAHGDSGIEDQTPKSSEENN
>CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSLYLDLSALQSVPAANLNRDDLGSPKQVRYGNAPRIRVSSQSWKRVIRHGVEQDLGEKAARTRMVPVKVKQALMQAGWPEELAAFAGAQVAASAGKKGIGTEKQGHTSVLLFLPEAAIAELVAICAEHREALEKAQGKRNAGQLLSPDRIEEILKRRTASISLLGRMLAELPDANVDGAAQVAHAFTTHAAEPQRDYFTAVDDWLGQAETGSGHLDTAEFSAGVFYRFATVNITDLMKNLEGDTKAARTVLGSFAEHFLLSLPQAKRTSTAPHTLPDLAYLAVRQHRPLSLAAAFEAPVTADGLGGFAKPSRSTLASYAHNINRLTGDDRHRPFHGHATIAPEEQLAGLGGAHDSYGDLIEAALEAALPESGEQR
>CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSGLLLRLAGPLQSWGERSAFTAVRDTAPFPTRSALIGLFAAAEGIGRGGGLARYESLEFIVRVDRPGIRLIDYHTVGGGLPKARTAATSGGSNKGAAVITRRHYLADAVFAVAVAGPDKDLTRLAGALRHPHWAPYLGRRSCVPDEPFLLRDHVQDPDEELRAHVPVSQTPPHDGSDLVVDFLYERMPTDVAAAAVDVLTANDAPVSFAQHSRSHTTRRLYRTARVVPNRLATPHHTLMQQLIEYAHDENTEEGA
>CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTDDAVIARIRLNPHSRPVQRDLRDATQMHRTVMRMVPDSLGDSPRHKAGLLYRLDETTDSSTLLVQASQLDPTLLPSGYGLADVKSLAPMFNALREGLAVRYRIVLNPSKRERLSLAEKGKRGRVVPLSGPDADAWWLRRAAEAGLQLHVLTPTNLDAVRPRGKDAPPMRHSLLRYDGTATVTDPAALTDAVLTGIGRGKPYGAGLLSLAPATTA
>CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLPRVADSLSFLYLDMVRVIQDDTGVCAQIHVGNGRTDLVYLPTAALSCLLLGPGVSITTPVLNTLARHGTTVVSTGSGGVRAYAGILPDSLTTHWLEQQVSTWSDPVRRLDVATRMYAMRFGNAEIPDGVTLDQLRGMEGQRMKALYKILAQQHGIGRFRRNYHPDQWQDQDPVNLALSSANTCLYGIVHAALLALGLSPALGFVHAGTQHALVYDVADLYKAETTLPVAFALHQSTNPEKEARRRFREELRLLRLLPRIVRDVQALLTPSHASGTEDRSERRDIDMVHLWDPKTGSLPAGVNYATGTN
>CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPSMFVIATTAVPDHLRGALSRWASEVVPGIFVGTVSARVRDELWTTVTETVGDGAAILVHPAATEQGYTIHTAGTRRRVPIDFDGLTLVRMTAPTAKQWQSPT
>CP029188.1|AWI28361.1|1330538_1331000_+|transcriptional-regulator
MSQEASPRGTFLKIANAVKTSIDADPEMTELPSAAEIMRDYGVSRGVALRVFGVLEKEGRAEPVPGGRWRVVRHGQERDRRPLTEQIAEVIRTDELQVGAKFPSTGALAKRFGTSRPTVAKALDKLEAAGLLSASQQGKQRTVLALPGREERS
>CP029188.1|AWI28362.1|1331001_1331574_+|phosphohydrolase
MSSAGLTDSAYPLAESLLAEPLPRRWAHSLGVAERARIIAPILGDDAELLEAAAVLHDIGYSPDLAKTGFHPLDGARYLRDVANADIRVTRLVAHHSCAWMEAEARGLREELESEFPRERAELSDALCFCDMNTTPDGTPTNPVDRVNEIAGRYGPDSLIGRFIRRAEPEILACNARVLERVDAVKRQPM

Crispr_ID: CP029188_6

• CRISPR_ID: CP029188_6
• CRISPR_location: 1329017-1330326
• CRISPR_type: TypeI-E
• Repeat_type: NA
• Spacer_info: 21 spacers
• Cas_protein_info: cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

Consensus repeat of CP029188_6

Consensus_repeat	Method
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CRISPRCasFinder
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CRT
CGGAACACCCCCGCGTCGGCGGGGAGGAC	PILER-CR

spacers of CP029188_6

>6.1|1329046|32|CP029188|CRISPRCasFinder,CRT
CACTTCGGTGGACGTCGCCCATTCGGCTGGGA
>6.2|1329107|32|CP029188|CRISPRCasFinder,CRT
CACCCGCAGTTGATCCCGGCGGTGCTGGGGCT
>6.3|1329168|32|CP029188|CRISPRCasFinder,CRT
GCGGGCGGGGAGAGGATGACCGTCGCCGCGGT
>6.4|1329229|32|CP029188|CRISPRCasFinder,CRT
ACAGAGGGCACCGCCAGTTTCGCCGACGGCGC
>6.5|1329290|32|CP029188|CRISPRCasFinder,CRT
AGCAGGGCTGGACCCTCGACCGCATGGCCGCA
>6.6|1329351|32|CP029188|CRISPRCasFinder,CRT
CCGAGGAGGGACACGGAGAACGGCGCGCCGTC
>6.7|1329412|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
TGCGCATGGGCTGGCACAGGAGCCCATCCTGG
>6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CCGACCGGCTCCGCACCGACCTCCCCAGGATC
>6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CAGCAGGCGGAGTACCACCTGCGGGCCCTGGC
>6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CCGCGGCCCCTCCACATCGGCGGCCGGGTATT
>6.11|1329656|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
AACGCGTGGGTGGACCCGGTGACCAACTGCCG
>6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
TCAGCCACCTCCTTCTCATTGCCCGCGAGCTG
>6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CCGGAGATGCCGCGGCCGAGCTGGATGTAGCC
>6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CAAGGAGGCCCGCGCCATGACCGCGACCAAGA
>6.15|1329900|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
AATCCCTGAGGAATCGAGGTGTGGCCCCTTTG
>6.16|1329961|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CCGGCCACACCGCACAGGATGCCGACCAGTGG
>6.17|1330022|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CTCTTGGTCGCGACGGGCATGGTGTCCCGGGC
>6.18|1330083|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CACGTCATCGACCCGATGCTGAGCCTGTTCCC
>6.19|1330144|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GTGTCGACGTAGCGCTGGGTCGCGGAGTCGCC
>6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
GTCGATAGCCTGCCCGAGCCGGTCGCCCAGGT
>6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR
CATCCGGTCCAGGGCGTCCCGGCCGGGCGGGT

CRISPR arrays and Neighbor proteins around CP029188_6

CRISPR arrays

The CRISPR arrays of CP029188_6

>merge|CP029188|6|1329017-1330326|CRISPRCasFinder,CRT,PILER-CR
GTCCTCCCCGCCGACGCGGGGGTGTTCCGCACTTCGGTGGACGTCGCCCATTCGGCTGGGAGTCCTCCCCGCCGACGCGGGGGTGTTCCGCACCCGCAGTTGATCCCGGCGGTGCTGGGGCTGTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGGGCGGGGAGAGGATGACCGTCGCCGCGGTGTCCTCCCCGCCGACGCGGGGGTGTTCCGACAGAGGGCACCGCCAGTTTCGCCGACGGCGCGTCCTCCCCGCCGACGCGGGGGTGTTCCGAGCAGGGCTGGACCCTCGACCGCATGGCCGCAGTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGAGGAGGGACACGGAGAACGGCGCGCCGTCGTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCGCATGGGCTGGCACAGGAGCCCATCCTGGGTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGACCGGCTCCGCACCGACCTCCCCAGGATCGTCCTCCCCGCCGACGCGGGGGTGTTCCGCAGCAGGCGGAGTACCACCTGCGGGCCCTGGCGTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGCGGCCCCTCCACATCGGCGGCCGGGTATTGTCCTCCCCGCCGACGCGGGGGTGTTCCGAACGCGTGGGTGGACCCGGTGACCAACTGCCGGTCCTCCCCGCCGACGCGGGGGTGTTCCGTCAGCCACCTCCTTCTCATTGCCCGCGAGCTGGTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGGAGATGCCGCGGCCGAGCTGGATGTAGCCGTCCTCCCCGCCGACGCGGGGGTGTTCCGCAAGGAGGCCCGCGCCATGACCGCGACCAAGAGTCCTCCCCGCCGACGCGGGGGTGTTCCGAATCCCTGAGGAATCGAGGTGTGGCCCCTTTGGTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGGCCACACCGCACAGGATGCCGACCAGTGGGTCCTCCCCGCCGACGCGGGGGTGTTCCGCTCTTGGTCGCGACGGGCATGGTGTCCCGGGCGTCCTCCCCGCCGACGCGGGGGTGTTCCGCACGTCATCGACCCGATGCTGAGCCTGTTCCCGTCCTCCCCGCCGACGCGGGGGTGTTCCGGTGTCGACGTAGCGCTGGGTCGCGGAGTCGCCGTCCTCCCCGCCGACGCGGGGGTGTTCCGGTCGATAGCCTGCCCGAGCCGGTCGCCCAGGTGTCCTCCCCACCGACGCGGGGGTGTTCCGCATCCGGTCCAGGGCGTCCCGGCCGGGCGGGTGTCCTCCCCGCCGACGCGGGGGTGTTCCG

>CP029188|6|6|1329017-1330326|CRISPRCasFinder
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CACTTCGGTGGACGTCGCCCATTCGGCTGGGA
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CACCCGCAGTTGATCCCGGCGGTGCTGGGGCT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GCGGGCGGGGAGAGGATGACCGTCGCCGCGGT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	ACAGAGGGCACCGCCAGTTTCGCCGACGGCGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AGCAGGGCTGGACCCTCGACCGCATGGCCGCA
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGAGGAGGGACACGGAGAACGGCGCGCCGTC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	TGCGCATGGGCTGGCACAGGAGCCCATCCTGG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGACCGGCTCCGCACCGACCTCCCCAGGATC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CAGCAGGCGGAGTACCACCTGCGGGCCCTGGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGCGGCCCCTCCACATCGGCGGCCGGGTATT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AACGCGTGGGTGGACCCGGTGACCAACTGCCG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	TCAGCCACCTCCTTCTCATTGCCCGCGAGCTG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGGAGATGCCGCGGCCGAGCTGGATGTAGCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CAAGGAGGCCCGCGCCATGACCGCGACCAAGA
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AATCCCTGAGGAATCGAGGTGTGGCCCCTTTG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGGCCACACCGCACAGGATGCCGACCAGTGG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CTCTTGGTCGCGACGGGCATGGTGTCCCGGGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CACGTCATCGACCCGATGCTGAGCCTGTTCCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GTGTCGACGTAGCGCTGGGTCGCGGAGTCGCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GTCGATAGCCTGCCCGAGCCGGTCGCCCAGGT
GTCCTCCCCACCGACGCGGGGGTGTTCCG	CATCCGGTCCAGGGCGTCCCGGCCGGGCGGGT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG

>CP029188|6|2|1329017-1330326|CRT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CACTTCGGTGGACGTCGCCCATTCGGCTGGGA
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CACCCGCAGTTGATCCCGGCGGTGCTGGGGCT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GCGGGCGGGGAGAGGATGACCGTCGCCGCGGT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	ACAGAGGGCACCGCCAGTTTCGCCGACGGCGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AGCAGGGCTGGACCCTCGACCGCATGGCCGCA
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGAGGAGGGACACGGAGAACGGCGCGCCGTC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	TGCGCATGGGCTGGCACAGGAGCCCATCCTGG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGACCGGCTCCGCACCGACCTCCCCAGGATC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CAGCAGGCGGAGTACCACCTGCGGGCCCTGGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGCGGCCCCTCCACATCGGCGGCCGGGTATT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AACGCGTGGGTGGACCCGGTGACCAACTGCCG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	TCAGCCACCTCCTTCTCATTGCCCGCGAGCTG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGGAGATGCCGCGGCCGAGCTGGATGTAGCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CAAGGAGGCCCGCGCCATGACCGCGACCAAGA
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AATCCCTGAGGAATCGAGGTGTGGCCCCTTTG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGGCCACACCGCACAGGATGCCGACCAGTGG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CTCTTGGTCGCGACGGGCATGGTGTCCCGGGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CACGTCATCGACCCGATGCTGAGCCTGTTCCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GTGTCGACGTAGCGCTGGGTCGCGGAGTCGCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GTCGATAGCCTGCCCGAGCCGGTCGCCCAGGT
GTCCTCCCCACCGACGCGGGGGTGTTCCG	CATCCGGTCCAGGGCGTCCCGGCCGGGCGGGT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG

>CP029188|6|2|1329383-1330326|PILER-CR
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	TGCGCATGGGCTGGCACAGGAGCCCATCCTGG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGACCGGCTCCGCACCGACCTCCCCAGGATC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CAGCAGGCGGAGTACCACCTGCGGGCCCTGGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGCGGCCCCTCCACATCGGCGGCCGGGTATT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AACGCGTGGGTGGACCCGGTGACCAACTGCCG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	TCAGCCACCTCCTTCTCATTGCCCGCGAGCTG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGGAGATGCCGCGGCCGAGCTGGATGTAGCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CAAGGAGGCCCGCGCCATGACCGCGACCAAGA
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	AATCCCTGAGGAATCGAGGTGTGGCCCCTTTG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CCGGCCACACCGCACAGGATGCCGACCAGTGG
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CTCTTGGTCGCGACGGGCATGGTGTCCCGGGC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	CACGTCATCGACCCGATGCTGAGCCTGTTCCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GTGTCGACGTAGCGCTGGGTCGCGGAGTCGCC
GTCCTCCCCGCCGACGCGGGGGTGTTCCG	GTCGATAGCCTGCCCGAGCCGGTCGCCCAGGT
GTCCTCCCCACCGACGCGGGGGTGTTCCG	CATCCGGTCCAGGGCGTCCCGGCCGGGCGGGT
GTCCTCCCCGCCGACGCGGGGGTGTTCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28362.1|1331001_1331574_+|phosphohydrolase	unknown	unknown	gnl|CDD|366867
CP029188.1|AWI28363.1|1331561_1332035_-|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240032
CP029188.1|AWI28368.1|1335578_1335953_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28364.1|1333798_1334068_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28366.1|1334339_1335206_+|hypothetical-protein	unknown	unknown	gnl|CDD|237865
CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl|CDD|182031
CP029188.1|AWI32920.1|1315911_1316121_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl|CDD|187862
CP029188.1|AWI32923.1|1332037_1332754_-|XRE-family-transcriptional-regulator	unknown	unknown	gnl|CDD|378935
CP029188.1|AWI28354.1|1314548_1315352_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
CP029188.1|AWI28367.1|1335202_1335595_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
CP029188.1|AWI28365.1|1334064_1334343_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28361.1|1330538_1331000_+|transcriptional-regulator	unknown	unknown	gnl|CDD|153418
CP029188.1|AWI28369.1|1336028_1336232_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|378244
CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl|CDD|187860
CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl|CDD|273842
CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl|CDD|378050

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	7.5e-41	135.3	0.0
CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	7.6e-50	164.6	0.0
CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	3.3e-22	74.1	5.8
CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	4.6e-97	320.5	0.0
CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	1.1e-69	230.3	3.5
CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	2.3e-49	162.4	0.3
CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	8.8e-33	107.1	0.0
CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	5.2e-96	315.6	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28362.1|1331001_1331574_+|phosphohydrolase	gnl|CDD|366867	pfam01966, HD, HD domain. HD domains are metal dependent phosphohydrolases.	9.48837e-10
CP029188.1|AWI28363.1|1331561_1332035_-|NUDIX-domain-containing-protein	gnl|CDD|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.30775e-52
CP029188.1|AWI28366.1|1334339_1335206_+|hypothetical-protein	gnl|CDD|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	0.00960902
CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.93808e-84
CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl|CDD|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.65295e-15
CP029188.1|AWI32923.1|1332037_1332754_-|XRE-family-transcriptional-regulator	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.00271967
CP029188.1|AWI28354.1|1314548_1315352_-|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.80796e-32
CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	9.19263e-119
CP029188.1|AWI28361.1|1330538_1331000_+|transcriptional-regulator	gnl|CDD|153418	cd07377, WHTH_GntR, Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.	8.33406e-12
CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.15533e-38
CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.73786e-122
CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	2.90063e-57
CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl|CDD|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.84421e-49
CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl|CDD|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	3.09924e-46

Protein sequences

>CP029188.1|AWI28360.1|1328684_1328999_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPSMFVIATTAVPDHLRGALSRWASEVVPGIFVGTVSARVRDELWTTVTETVGDGAAILVHPAATEQGYTIHTAGTRRRVPIDFDGLTLVRMTAPTAKQWQSPT
>CP029188.1|AWI32922.1|1327752_1328685_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLPRVADSLSFLYLDMVRVIQDDTGVCAQIHVGNGRTDLVYLPTAALSCLLLGPGVSITTPVLNTLARHGTTVVSTGSGGVRAYAGILPDSLTTHWLEQQVSTWSDPVRRLDVATRMYAMRFGNAEIPDGVTLDQLRGMEGQRMKALYKILAQQHGIGRFRRNYHPDQWQDQDPVNLALSSANTCLYGIVHAALLALGLSPALGFVHAGTQHALVYDVADLYKAETTLPVAFALHQSTNPEKEARRRFREELRLLRLLPRIVRDVQALLTPSHASGTEDRSERRDIDMVHLWDPKTGSLPAGVNYATGTN
>CP029188.1|AWI28359.1|1327045_1327696_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTDDAVIARIRLNPHSRPVQRDLRDATQMHRTVMRMVPDSLGDSPRHKAGLLYRLDETTDSSTLLVQASQLDPTLLPSGYGLADVKSLAPMFNALREGLAVRYRIVLNPSKRERLSLAEKGKRGRVVPLSGPDADAWWLRRAAEAGLQLHVLTPTNLDAVRPRGKDAPPMRHSLLRYDGTATVTDPAALTDAVLTGIGRGKPYGAGLLSLAPATTA
>CP029188.1|AWI28358.1|1326278_1327049_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSGLLLRLAGPLQSWGERSAFTAVRDTAPFPTRSALIGLFAAAEGIGRGGGLARYESLEFIVRVDRPGIRLIDYHTVGGGLPKARTAATSGGSNKGAAVITRRHYLADAVFAVAVAGPDKDLTRLAGALRHPHWAPYLGRRSCVPDEPFLLRDHVQDPDEELRAHVPVSQTPPHDGSDLVVDFLYERMPTDVAAAAVDVLTANDAPVSFAQHSRSHTTRRLYRTARVVPNRLATPHHTLMQQLIEYAHDENTEEGA
>CP029188.1|AWI28357.1|1325151_1326282_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSLYLDLSALQSVPAANLNRDDLGSPKQVRYGNAPRIRVSSQSWKRVIRHGVEQDLGEKAARTRMVPVKVKQALMQAGWPEELAAFAGAQVAASAGKKGIGTEKQGHTSVLLFLPEAAIAELVAICAEHREALEKAQGKRNAGQLLSPDRIEEILKRRTASISLLGRMLAELPDANVDGAAQVAHAFTTHAAEPQRDYFTAVDDWLGQAETGSGHLDTAEFSAGVFYRFATVNITDLMKNLEGDTKAARTVLGSFAEHFLLSLPQAKRTSTAPHTLPDLAYLAVRQHRPLSLAAAFEAPVTADGLGGFAKPSRSTLASYAHNINRLTGDDRHRPFHGHATIAPEEQLAGLGGAHDSYGDLIEAALEAALPESGEQR
>CP029188.1|AWI32921.1|1324595_1325150_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MCESKKAQADLRTGLALPVERCNYLHRYLVPRLSERLHPDAKRAHYAVAALIAARPRSAREATAHEAKGARALADWHLRPNLGAALAEGARKGVLKPDSAEGDLHLMARQSSEAIHPRLPALTRHLLTGGVAIDWAVMLEDLSWWNRKRDIIATRWLESYFRVSDAHGDSGIEDQTPKSSEENN
>CP029188.1|AWI28356.1|1322823_1324407_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MSGGFDLRDEPWIPVRLLTGESARFGFRRLFARAHEIEDLELPVPPAASGLLRILAAMTARIAQNAGIRLDDADTAEEIEEWDALRDRVLARGRFDSVAVNAYFDKEIPEGRFDLFDDSRPFLQDPRLVRECIDTKGAPNPSGVNKLVLGRPTGVNGAVLFGHFTDTNPVPVPAAEAVWHLIAQLYYGPSGQCTPRRITEHRAGSGDAAPLRKSVSYFPWAPTLFASLVLAVPSPRIAVETEGRDACPWEGELPDPLQPLASMTWPGRMLTGRFRHAVLLVPSADRRSVVDAYITWSTHEPPREVRDPFLILDRRKDGGFHAREADGARALWRDVDALLLADSLQDALRPPALEGLPKRLLATLRVRAYGFEQDGQQKDSVWFQATTPPVLRWQEEAEPAMAHHLARCHRVGEDAGRRLEFAAKVAWKIATDVNTDVSPRAKVKIDHRKPGPWASAALTRYWPAAEKQFWRLAATDRLNSPIEQPFVDAALAALDEAIGQANRADIRVARASSRARAIIRGLLLPPR
>CP029188.1|AWI28355.1|1319803_1322662_+|CRISPR-associated-helicase-Cas3'
MSSVSWGFPDQSLWGKSRGLDPELPPYPLVRHLIDTAAMALHIWDVYLSGNQRRSISQGMGFEEEPERARAVVALCAGLHDIGKVSGFQFCSHRARAHLSATFLSEQGALGNERIAHDVAGMRAVSAVLGALGFEGDADEMAKAAERIAEIVGGHHGRFHRNEFHGDPPFLGGPAWARQREAHAVAVHELLGSPQAPGEFKAPAAALVTGVVILADWLMSQEEYLCRRQQVLEPSLQAHFTQSKADAATLLAEAGLTPVDLERRGFSETYGINGQPNPLQRSVMDELPSVVRDATRGGILLVTAAPGDGKSETALEAERVLSGAFGTRGFAFLLPTMATSDQMYSRIASTLQRQAGQDAGLTLTHSMAWLSSAYADHDLVSGQRISAGDGDEEEGETGGRCEADMRPRQWLRGAKRPLLAQFTVGTVDQALMSVLPVRHNALRMLALSGKTFIIDEAHAYDPYMQVLLGRLLNWLGWYGVPVVLLSATLPRSISDRLIKEYLQGVGHGRRSLRGRTFPAPYPGWLYVDGASARATEISEPRQLEQAAARSMELRVRVEPVVHGERPGSRDRLTVIERLLEPVVRERGGCALVVCNTVGDAQETYMRLRERFDHRSHAEGGCVQLLHARFPGDIRESRTAGVTDGMGRRGPRPERRIVVATQVVEQSLDLDADIVISDLAPLALLLQRAGRCWRHENWWVQHGRPCGRGRPGWAREPQLVVLDPLTYGGGVPRQWGEVYPKFLLTETSKRLGAISAATISIPGDVQDLVEAVHGDRSGLFDWENPDPRRSAAWNAYRGKELAEQGVASVVAIPAARSVRNLHDLHHLPGSEDEWELSTRLGADSVRLLCAYEQENGRLTLDIAGEELLPDPGRGERVPPAAVRAVMRRTIPVRADWFGAEDVEALSPPLSWTDHPMLSDLLVLHQRVRDGNPQAVPVGGKSVILDGDLGLVRR
>CP029188.1|AWI32920.1|1315911_1316121_+|hypothetical-protein
MTDGAAIDVADDRILAKQIIRGLMVIREHLGCSLHEALEVFAARYEVLRVERPDDFVCSRDEYGVGFYS
>CP029188.1|AWI28354.1|1314548_1315352_-|alpha/beta-hydrolase
MDIARRNNVSIIGNPDGRTVVLAHGFGCDQNMWRLTVPALVEKYRVVLFDYVGSGRSDAAAFSERRYASLDGYALDVVEVCEALDVRDAVFVGHSVSAMVGVLAADRAPERLGALVMVAPSPRYIDDDGYRGGFSADDIDELLASLESNYLGWSAAMAPVIMGNEDRPELGEELRNSFCATDPDMARVFARTTFLSDSRDDLKNVRVPTLVLECTQDAVAPREVGAFVHQAIPSSTLLTLDATGHCPHLSAPDATNDAILSFLAGLR
>CP029188.1|AWI28361.1|1330538_1331000_+|transcriptional-regulator
MSQEASPRGTFLKIANAVKTSIDADPEMTELPSAAEIMRDYGVSRGVALRVFGVLEKEGRAEPVPGGRWRVVRHGQERDRRPLTEQIAEVIRTDELQVGAKFPSTGALAKRFGTSRPTVAKALDKLEAAGLLSASQQGKQRTVLALPGREERS
>CP029188.1|AWI28362.1|1331001_1331574_+|phosphohydrolase
MSSAGLTDSAYPLAESLLAEPLPRRWAHSLGVAERARIIAPILGDDAELLEAAAVLHDIGYSPDLAKTGFHPLDGARYLRDVANADIRVTRLVAHHSCAWMEAEARGLREELESEFPRERAELSDALCFCDMNTTPDGTPTNPVDRVNEIAGRYGPDSLIGRFIRRAEPEILACNARVLERVDAVKRQPM
>CP029188.1|AWI28363.1|1331561_1332035_-|NUDIX-domain-containing-protein
MGRIDYLHDPDAPPANSVVPSVVAFVQNDAGEVLVIQRSDNGRWALPGGGHDVGESISDTVVREVWEETGIKAEVVDMSGIYTDPGHVMLYDDGEARQQFSICFRARPIGGDVRTSNETTQVRWVAPADLAGLDIHPTMRLRIEHAMDRTRTAPYIG
>CP029188.1|AWI32923.1|1332037_1332754_-|XRE-family-transcriptional-regulator
MTVQDLAEAIEVNPKTVERWITQGKVPYRRHQYATASVLKVEVTTLWEDSRMVDSATDLSKAEIVTVYPHRHMVPTGLWREIYGRATSHIDVLVYSGLWLSEDPLFHDLLKTKTQGNAQVRILLGDPDCAAVKQRGIDEGHQIMDGKIRNALMNYRPLFQSHPDIGFRLHDATLYNSLFRADDEMLVNTHVYGIGAYMAPVLHLRRLPGGGLFDTYANSIEQTWGGARQVTEHDLTGA
>CP029188.1|AWI28364.1|1333798_1334068_+|hypothetical-protein
MKHMEARQVAVTAIADDREPTGAELDAIEREMPLIAAEVELLDALIVTLERAATVLDERRIRRARNRVLAARRDLANRTAGVPGGPVVA
>CP029188.1|AWI28365.1|1334064_1334343_+|hypothetical-protein
MMPTAQMSSRGGPWRLYVALMGATEWPDFRWERPTPVPTITERRAALATLGFEQVPGSQWSWIEDTVTHGDDASPVLLIATVDVRELTGGAS
>CP029188.1|AWI28366.1|1334339_1335206_+|hypothetical-protein
MNRFGKGLLVLALVAVVAMAFRVSWNALRDVAKATGADGTAATLYPFVVDGLMALALVATLVLTGDARRFALRVLATYTLASLVLNYVHGLVPELHGRSVDWSRLADWDPANWALVLLATSLPVGSIYFGSDLVAKVLHHRPDPTPPPDETLEITVNRSTADLGEHAELPAARVEEVPARPVEPVPAAVEGEESERVPVGAVAAEQPRVRRATGRVPVVARSSRPVRTAEELLIEAREATAGWAIEKLTAEGIRKAVRTSPAKARVLRETLRAERTTPAEPLPAAERA
>CP029188.1|AWI28367.1|1335202_1335595_+|hypothetical-protein
MMRLTRADCFDPMGERFGIPTYPWRCAPDGYATRRQLRAAGLRPGGQPVAAQCLRPRRRRGPLVAYLYRVDRAMPVRPMSPGRRAALAKANAARRLCPGCGRDAGDVLPAALGTCVPCAYPEGTSDGLAA
>CP029188.1|AWI28368.1|1335578_1335953_+|hypothetical-protein
MDSLPELARVVQLPDGTHVYVDPTQLPAAHSGPQVVHQHVHQAPPDRTVQRIALGSGVGAGAVAAGVYFGPLLVSVLTALAANLALLALLAAVCAWGVVTVVKSVAGTEGKAAAKSMRRVRHRR
>CP029188.1|AWI28369.1|1336028_1336232_+|hypothetical-protein
MAREPKLTTGEKAKVAWYVARMAKRGLADDRLTGGRVHQRDLERKVERVIEQARAREERDAKKNGRK

Crispr_ID: CP029188_7

• CRISPR_ID: CP029188_7
• CRISPR_location: 1437042-1437146
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_7

Consensus_repeat	Method
TGCTCTGCCAATTGAGCTACAGGGGAT	CRISPRCasFinder

spacers of CP029188_7

>7.1|1437069|51|CP029188|CRISPRCasFinder
CGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC

CRISPR arrays and Neighbor proteins around CP029188_7

CRISPR arrays

The CRISPR arrays of CP029188_7

>merge|CP029188|7|1437042-1437146|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGATCGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGCTGCTCTGCCAATTGAGCTACAGGGGAT

>CP029188|7|7|1437042-1437146|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGAT	CGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC
TGCTCTGCCAATTGAGCTACAGGGGAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28456.1|1447742_1448234_-|YbjN-domain-containing-protein	unknown	unknown	gnl|CDD|371210
CP029188.1|AWI28445.1|1426662_1427808_-|hypothetical-protein	unknown	unknown	gnl|CDD|238017
CP029188.1|AWI32929.1|1427977_1429606_+|serine/threonine-protein-kinase	unknown	unknown	gnl|CDD|270916
CP029188.1|AWI28448.1|1435791_1436283_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28443.1|1422849_1424235_-|oxidoreductase	unknown	unknown	gnl|CDD|223354
CP029188.1|AWI28452.1|1441479_1443405_+|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
CP029188.1|AWI32930.1|1430892_1433715_-|LuxR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|226415
CP029188.1|AWI28451.1|1439746_1441480_+|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
CP029188.1|AWI28442.1|1420436_1422353_-|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl|CDD|223953
CP029188.1|AWI28444.1|1424377_1426075_-|LuxR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197715
CP029188.1|AWI32928.1|1426327_1426624_+|hypothetical-protein	unknown	unknown	gnl|CDD|366264
CP029188.1|AWI28454.1|1445285_1446047_-|phosphoglyceromutase	unknown	unknown	gnl|CDD|184519
CP029188.1|AWI28446.1|1429933_1430647_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28457.1|1448226_1449570_-|D-inositol-3-phosphate-glycosyltransferase	unknown	unknown	gnl|CDD|132490
CP029188.1|AWI28450.1|1437999_1439439_+|sugar-kinase	unknown	unknown	gnl|CDD|198375
CP029188.1|AWI28455.1|1446181_1447690_+|MFS-transporter	unknown	unknown	gnl|CDD|340887
CP029188.1|AWI28449.1|1437396_1437696_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28447.1|1433742_1435071_+|hypothetical-protein	unknown	unknown	gnl|CDD|238121
CP029188.1|AWI32931.1|1449808_1450651_+|SAM-dependent-methyltransferase	unknown	unknown	unknown
CP029188.1|AWI28453.1|1444466_1444715_-|hypothetical-protein	unknown	unknown	gnl|CDD|173322

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28445.1|1426662_1427808_-|hypothetical-protein	gnl|CDD|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	3.73337e-06
CP029188.1|AWI32929.1|1427977_1429606_+|serine/threonine-protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	6.16777e-86
CP029188.1|AWI28443.1|1422849_1424235_-|oxidoreductase	gnl|CDD|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	3.7863e-35
CP029188.1|AWI28451.1|1439746_1441480_+|multidrug-ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.55907e-156
CP029188.1|AWI28452.1|1441479_1443405_+|multidrug-ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
CP029188.1|AWI32930.1|1430892_1433715_-|LuxR-family-transcriptional-regulator	gnl|CDD|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	2.83811e-30
CP029188.1|AWI28456.1|1447742_1448234_-|YbjN-domain-containing-protein	gnl|CDD|371210	pfam10722, YbjN, Putative bacterial sensory transduction regulator. YbjN is a putative sensory transduction regulator protein found in Proteobacteria. As it is a multi-copy suppressor of the coenzyme A-associated temperature sensitivity in temperature-sensitive mutant strains of Escherichia coli the suggestion is that it both helps CoA-A1 and possibly works as a general stabilizer for some other unstable proteins. This family was expanded to subsume other related families: DUF1790, DUF1821 and DUF2596.	1.29348e-18
CP029188.1|AWI28442.1|1420436_1422353_-|long-chain-fatty-acid--CoA-ligase	gnl|CDD|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	8.24829e-173
CP029188.1|AWI32928.1|1426327_1426624_+|hypothetical-protein	gnl|CDD|366264	pfam00720, SSI, Subtilisin inhibitor-like.	5.66927e-06
CP029188.1|AWI28454.1|1445285_1446047_-|phosphoglyceromutase	gnl|CDD|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	0
CP029188.1|AWI28444.1|1424377_1426075_-|LuxR-family-transcriptional-regulator	gnl|CDD|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.54303e-17
CP029188.1|AWI28457.1|1448226_1449570_-|D-inositol-3-phosphate-glycosyltransferase	gnl|CDD|132490	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.	0
CP029188.1|AWI28450.1|1437999_1439439_+|sugar-kinase	gnl|CDD|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	2.0003e-116
CP029188.1|AWI28455.1|1446181_1447690_+|MFS-transporter	gnl|CDD|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.67164e-90
CP029188.1|AWI28447.1|1433742_1435071_+|hypothetical-protein	gnl|CDD|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.36302e-37
CP029188.1|AWI28453.1|1444466_1444715_-|hypothetical-protein	gnl|CDD|173322	PTZ00023, PTZ00023, glyceraldehyde-3-phosphate dehydrogenase; Provisional.	0.00729434

Protein sequences

>CP029188.1|AWI28448.1|1435791_1436283_+|hypothetical-protein
MADRTTEFGPDHPDTLSARGSVVRHRRAAGDLPGAIADAQVLVEDMTRALGPDHRDTHEQRRFLTCFLSANGETAEAVRRLTALFADVEALGPTRQSDLLIVRTSLARELERNGDLTGALAPVEREIAAERSTIYGIDENLGQHPLHRLEGWRDQLAAGVRRK
>CP029188.1|AWI28447.1|1433742_1435071_+|hypothetical-protein
MPPATGGAPAHPVVRHRQPAKFGSTISRPAADEPPYPRGWPRLPRAGQRSSGGSDECGDYVADLRNTTVLMVRCAREDQVPGEYGRCGARKAPGTPIGGQMLIVGVMAGIVLPIVVWVVRRRTGGRFRYRPMFEAACEVTVGGRRLVAYSGHRKEIRLGDPAAREDVAVLVNSRTWVRALCEVRVDGTPLLASGGRDGVVRLWNLEDRGELVASFTGHRGWVFALCTVRVSGRELLASAGRDHTVRLWDPSDGRLVRAIDTGRGRGWIFALCQVRTGGRTLIAAGHGNGTVLVWNPESTQADLELTAHKGVVWTLCEVSDSDHTLLATAGRDGVVRLWDLEAPQEARALTAGAGPVYALCQADAGDRTVLVAGGDGPGTAVWDPFTGERVGDLGMDLAGLISGHGWVRAVCQVRPPEGPPLLVTVGYDDGARVWDVAKETGT
>CP029188.1|AWI32930.1|1430892_1433715_-|LuxR-family-transcriptional-regulator
MIGREAELGRLDRLLADLVGDTGGRTAVLDVSGEAGIGKSRLVHELCLRAARSGAAVLRGRATEYERHIPFQPFTDAFADLDPEVVESFPAAAEVAPVISGTPRRADRFGLHRATAALLTHAAASPLVVVVDDMHWADAASLELLDHLVRHPVRARVLLVVARRDRQSPAPLAATLTRGAGTGAVRRMVLGPLGERECVELVTPGLARDAVVRLFAASQGNPLYLLALLQAHREGASVSRLSTTGLGAVLLDELTPLTPAQRRLVDVAAVLGDHATPALLGPVTGREQADLAADLAELTRRDLLRTGQHGRIALRHPVLRSLVHDGTDPWLRTETHRLAAAELARVGAPLAERAHHAERSLSGWDPQTAAVLTEAAEQAAHTAPASCAHWLEVVLRRLPHTPEHAARRRKLMLRLARALGACGKLDRSRDLLHQVIAMPDPGDGTGSRASAVVLCAVMERHLGRYSEAVALLRRELHSDPPPSPADHVALGIELGSSAPHDTSYSTVRSEVARTLEVARSLGDETGVAGALAVAALGEAYEGETAAADSLARQAAALVDSLPDGDLNSLCEPLARLGWAEAFLDRFADAERHADRGLAIARRTGQLYLLPHLLLCKAHVRIQTCRLASAVELADEAEDVARGIGSDELLAFVLATKANALIDACPPGDPLPLATAEEAVAAAGVGVNWWASIAWCMLGHAALIAGDPARARDAVLRAGGPGLRRLQPSMRPLFLEILVTAAVADGDTEAVGEWARRARDEAERLDLPVQRASAMRSMAHVHLSLGDSRAAADLFAQAAEESARCGAAFWEAYSLLLGAPLPAADPDGPRRGQDAWRRAQRIAAAGDCRMLTGLAELVRPAVAEATDAPERRLAELTAREREIADLVAEGLTSPAIADRLCLSRRTVETHISRIYRKTGVSSRAALVGLMAGRAPGRPFSG
>CP029188.1|AWI28446.1|1429933_1430647_+|hypothetical-protein
MSTRDRLLAGFGAAALALALGACGSGADTEDSAKGSSAAAGATGDSASQDSENCPDKHSATVEDTEFGGTAEIELCALPEIHKTAVEADWTPVHEGPTEATPIMNIMPVVCDGDDDASCKEIKVGANDTCGGTPLKPNCHPLRGDKVSVVCSGKDRAGNPIRWYGVLLDSKRVVAEGTSHGTGLAGDFTDKGDKPIGYIAEKDLAKVSADLPACDGTVLHGNGARARALMEGLPLED
>CP029188.1|AWI32929.1|1427977_1429606_+|serine/threonine-protein-kinase
MAYLQPMRSDDPREVAGYRLLARIGEGGMGTVYLSRTRGNQPVALKVIRREYAQDDEFRRRFAQEARAARQVQGYHLVPVVDHDTTGVEPWLATTFMPAVPLDVALATYGPLPLPTALQLMGCAAEALRAVHAAGVIHRDLKPSNILLGPQGPSVIDFGIARAADATQLTRSGGLIGTPQFMSPEHANGQPLGPSTDIFSLGLVAAVAATGRHPYGDGGAITLATKIANTELRPPSLSGYPEPLQGILEQCLSADPAARPTPGELTEMCERVGGRRSQDFTGWLPEPIAAEIARREQAAEHPPAPAYASTATGLGAPTAPPTRPPRHTTAPPPAPAPAPVRRRTGLTAVAVLMAVAVTAGVTWSLTRPDGKGTDGAKGGATASSPAPGTSKSAGGKTGGKATYTAVFEKKPFTLRAPQDFAYTHVDLDAPKADPKTDWQGSSEIAPGSELKYSHWSGVSELKFVTTTGKSTGATPEDCKSATETNALATEIQGEALTTELTKGTVLCTVTSDGKLAMLKITDVVPHEVRPDYVAELTLWTIS
>CP029188.1|AWI28445.1|1426662_1427808_-|hypothetical-protein
MERNLAASADRADYLVDLSNIARQTSIGGPGDRSLHRLRLVLQGLVRLTGDPSVSVYLIADSSLLGGQKHFTDPAEARLLRRWVTAGLVEEVADADDRVLEIAGMTGIQVITGDYYVDHRPDHPWIQGNTWQFLKPEPGRKGSVRLVPLDMGVRTQAEISRKMELSALKKQGLLTSARKPLTDVVTRAWRCPEARCSLYSVRSGGRVLLPRMRRGVPTCELHGTPLLDDGPRPGAAQLKAVIDGTCAARYTLDEGSQTGIGRNPGEGGIALHGLLTAETAARVSRRHVVVQVKGGSVVVRDTSTYGTRMRSAGKRGELGAWEQLPPETNRPFRPGDELELASGVVLTRSGRRFPAELADAWRAEAVRTPLPTAAVAVTRLH
>CP029188.1|AWI32928.1|1426327_1426624_+|hypothetical-protein
MVRRTHPPDGPTEGVHRRERRLAHRLPAALLRRATRQPRSCRSWSLATATRRPGPTISCPVTVTGDGVWDGKPVSWSATHGNACEMSAGMARNSGFTF
>CP029188.1|AWI28444.1|1424377_1426075_-|LuxR-family-transcriptional-regulator
MSRPTTGSDQVKPRDPPAAIEQARDAVARRAWADAYATLDGLDRHRLTPDDLAALADASWWTSRIPESIKARTAAYSGYAARGDERRAGYCAWMLFYEHQLAGHVAAGAGWLRRARRHLSDGPECVEQCYLVWVEAEEAQRRGAFDEAMWHAVRMGEIAERCGSSDLVAMSIQVRAGVLLAQGRVADGLTLLDDAMCSAAAGELGPFFTGWIYCLGLQQCMSCADLRRAGEWTDAAMAWCASMPNENNFRGLCRVHRVQVLELRGEWPTAVGEAAVACEELLPWETRVAGEVVCLVGDIQRRSGDLAAAEASYEHAHELGHDPQPGLALLRLAQGRAASAAAALRPALAVEDTSGPGHLGRTRLLAAQVEISLATGRQAEARTAARTLESAAREWERRCGSGTTVLHATAAQAGGAVALAEQDAGRARHLLRRALSLWQGLAVPYEAAQVRMILAAADRAAGDSEGARLELRAAHAAFERLGAEPDARRGEALLSAARGRLPGRLTAREAEVLRLVAAGRTNRAVAAELVISEHTVARHLNNIYAKLDVSSRAAATAYAYTHGLA
>CP029188.1|AWI28443.1|1422849_1424235_-|oxidoreductase
MTTDSTVLDDRLTRRLRDAVRGEIVQPGDRGYDEARRVYNAVHEKRPAIIVRAADAGDIKATLHFARDLGLALAVRGGSHSVPGYGTCDDGVVLDLGVMRGVRVDPERRTARAEGGCTWADVNHATHPFGLATTGGIVSSTGIGGLTTGGGMGHLARRCGLACDNLVSADLVTADGSLVMCGEDHHADLLWALRGGGGNFGVVSSFEYRLHPVAHILGGPTFYPLDGDVLRAYRQLIADTPEEFNAVLVIGLGPPLPFLPERWHGRPLCGVLTCFSGPEDEDDRVVARLGRLGPILGQHVARMPYPVINTLFDDLLPAGLFHYWKGCFSTGLPDGAIDAYVEYGADTPSIESATVVFPIDGACHRVGPEETAFAYRDADFSTALSPTLPTRARLEERIGWVRAFAAALEPYSAGGGYVNFMDADDQHRVRANYRQNYDRLVALKRHYDPGNLFRLNHNIAP
>CP029188.1|AWI28442.1|1420436_1422353_-|long-chain-fatty-acid--CoA-ligase
MSSVHSLLESRPVSVAHLFLSRVEATPGQEAYRYPAPIDDRAGGGDSGAEQWRSLTWAQTGERVRAIAAGLIALGLQPEERVAISSSTRVEWILADLGVMCAGAAATAVYPSTNADETVYILSDSGSRAVFVENAAQLAKVAGHLDRLPGLGHAVLFDAEEAVPQLEKMEGLEGLEVLSLAELEKRGTAYLEEHPDAVEKTVRAIEPEQLATLIYTSGTTGRPKGVRLVHDCWSYQAVAQEARGLLRSDDVQYLWLPLSHVFGKALISGQIQTGHVLAVDGRIDRIVTNLPAVRPTLMASAPRIFEKVYNGIAGRARAEGGAKYRIFLWAAKVARDYARAGQESMAATGRRRVPASLAVRHAIADRLVYGKIRAAFGGNLRACVSGSAALAPDIGYFFAGAGVRILEGYGLTETSAGCVVNPADDNRIGTVGTPLPGTEVRVAQDGEILLRGPGIMRGYHNLPEKTAEVLESDGWLHTGDIGEVDEAGFVRITDRKKDVFKTSGGKYVAPTEIEGRFKAICPFVGNILVIGDGRNFCSALITLDETQIMPWAASHGLGGLGYAEVVSSPQVHELIDGFVQRVNGDLQRWQTIKKFSVLPRDLDVEHGELTPSLKVKRPVVEREYAEVIEAMYEGSREA
>CP029188.1|AWI28449.1|1437396_1437696_+|hypothetical-protein
MRYRLTFMAGLGVGYVLGARAGHERYEQMKKAAREFAQNPAVRNAAESAALSGREMAGKALHVVSDKVGDRMPDAVAERVRSLRERRQGGEDDWGTSNT
>CP029188.1|AWI28450.1|1437999_1439439_+|sugar-kinase
MGIVAGLDSSSAFTRIVVCDADTGAVLRQGYAPHPVEAKATDVDPQAWLLSLGEAAAGGLLEGVQAIGVSAQQHGLVPLDSSGAPVRPAMVGNDKRAQAAAADLVEAFGGRQAWAEAVGSVPQAGLPVSKLRWLARTEPEAARRTSLVLQPHDWLVWQLLGRPARRTTDRGAASATGYWSAGTGSYRPDLVELALGHQAALPEVLGPADAAGTTPEGLLISAGTGETMAAAFGLGLGTGDAVVSLGATGSVMAIHHEALADPSGMITSFADATGMHLPVVHTLNAVRALRGTAEMLGVEDLSELSALAMKSTPGASGLVLLPYLEGERTPHLPHTAGTLTGLRRESMKPEHLARAAFEGMLCSLADALDVLRGRGVAVRRVFLLGQAAELPAVQAGAPAIFAAQVVVPQPADYAALGAARQAAWALGAAQGTLAPHAPPSWRGAAAQVFEAGEELAVGQAVRQQYAATREQIHPGAFNP
>CP029188.1|AWI28451.1|1439746_1441480_+|multidrug-ABC-transporter-ATP-binding-protein
MLIRLLRTFLRPHRQAITLLVTLQLLQTSATLYLPTLNADIIDNGVVRGDTGYILTFGLLMTGISLVQVVCSIGAVYYGARTAAALGRDVRAAVFDRVQSFSAREVGHFGAASLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVLALSLDVPLSAVLLAVVPVLGVSVSLIVRRMRPLFRTVQERLDTVNRVLREQITGNRVIRAFVKDAYEAGRFRRSNAELTEVSMATGRLMALMFPIVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIAEVLATESSVVPPLAPVRETARHGRLEVRGADFRYPGAEQPVLHGVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVGGVDVRELDPALMARIVGLVPQKPYLFSGTVATNLRYGNPEATDEELWRALEVAQAADFVRELDGGLDAPVAQGGTNVSGGQRQRLAIARTLVQRPEIYLFDDSFSALDYATDAALRGALALETAESTVVIVAQRVATIRDADRIVVLDEGRVVATGRHHELMDGSETYREIVLSQLTEAEAA
>CP029188.1|AWI28452.1|1441479_1443405_+|multidrug-ABC-transporter-ATP-binding-protein
MAGPGGRMMMGQSGERSMDFRGSGRRLLRQLLPEKGALWLMVTAGVLGVGLSVAGPWILGKATDLVFAGVVGREMPAGLSRDQAVEALRERGDGGLADMLSAVDFTPGRGIDFTAVGGVLLVALAVFAAAGLLMLVSTRASTRVINRTVYRMREDVQAKLARLPLSYFDKARRGEVLSRATNDIDNISQTMQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPLSVAVAARVGKRSQPQFVRQWQSTGRLNAHVEEMYTGHTLVKVFGRQGQSAQEFAEQNEALYEAGFRAQFGSGVMQPLMYFVSNLNYVLVAVVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFDLLDAEEQAADPVRGARPGEPRGAVALEKVSFRYDPLKPLIEDLSLTVEPGQKVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDAAAMSRDDLRAGIGMVLQDTWLFGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVVDDEGSGVSAGEKQLVTIARAFLSDPAILVLDEATSSVDTRTEVLIQKAMARLAQGRTSFVIAHRLSTVRDADVILVMENGSIVEQGTHEELLPAGGAYARLYAAQFAQAVAEVD
>CP029188.1|AWI28453.1|1444466_1444715_-|hypothetical-protein
MSAGVAGLALGVMPATGAYAANQVTADRGCSDWRGGGCGHYNDYRDYRHHDRYYDHYYYDRYYYDDFNRNFNDVVVILVAAR
>CP029188.1|AWI28454.1|1445285_1446047_-|phosphoglyceromutase
MADATYKLILLRHGESEWNAKNLFTGWVDVNLTEKGEKEAVRGGELLEDAGLLPDVVHTSLQKRAIRTAQLALEAADRHWIPVHRSWRLNERHYGALQGKDKAQTLAEFGEEQFMLWRRSYDVPPPPLDDDNEFSQAHDARYAAIPPELRPRTECLKDVVVRMLPYWYDAIVPDLLAGRTVLVAAHGNSLRALVKHLDGVSDADIAALNIPTGIPLAYDLDADFKPVNPGGTYLDPEAAAAAIEAVKTQGKKK
>CP029188.1|AWI28455.1|1446181_1447690_+|MFS-transporter
MTVAALKRAAKESVSGLPRAFWWLWTSTLVNRLGAFVATFTALYLTLERGYSASYAGLVAALHGLGGVVSSLGAGVMADRLGRRPTLLISQTSTAASVALLGFMEHPVAIAAVAGLVGMTSNASRPAVQAMMADIVRPEDRVRAFALNYWAVNLGFAISSACAGLIAEYSYLAGFLGEAALTLVCAVVVFVKLPESRPERDTSAGSAEPEIGLGTVLRDGRYMGVVGLSFLLALIFMQSSVALPVAMGMDGWSPSDYGLVIALNGVLIIALQIPVTRLIEHRDPQRLLVVSALLAGYGFGLTAFAGSLGVYALTVVVWTLAEIVNSPTQMGLVVRLSPVHGRGRYQGVHTLSWSAAALIAPLMAGYVIDRFGAAWLWASCAVIGTVAALGYWLLMRGLPAGPAESRRDGATAVPVQRAERAPAPAPAPAPAPAPADPVPAAFPAGEPSGGIGAEAMAGAGAGTETGAGSCTAVVTGSEAEARVEAATGTGAEAGTAVGKTRV
>CP029188.1|AWI28456.1|1447742_1448234_-|YbjN-domain-containing-protein
MADPRQIIEAYLKDAELEWECPEPGAYVVTLPGTRKLATTCSLRVGRHTLSVNAFVIRHPDENEARVHRWLLERNLKLYGVSYAVDRLGDVYLVGRLPLSAVGPEELDRLLGTVLEAADGAFNSLLELGFAAAIRKEYAWRVARGESTRNLEAFTHLTRQATD
>CP029188.1|AWI28457.1|1448226_1449570_-|D-inositol-3-phosphate-glycosyltransferase
MSQYVSRLAGTLAAPPRLRLPGHHRRPRRVAMLSVHTSPLHQPGTGDAGGMNVYIVELARRLAAIGVEVEIFTRATAGGLPTAVELAPGVLVRHVDAGPYEGLAKEDLPAQLCAFTHGVMRAWAGHRPGHYDLVHSHYWLSGHVGWLAAERWGVPLVHAMHTMAKVKNAALADGDTPEPAARVIGETQIVEAADRLIANTAEEAGELVRHYGAHPAKVAVVHPGVNLDRFRVADGRSAARARLGLPRDAVIPLFAGRIQPLKAPDVLLRAVALLLEQDPSLRSRMVVPIVGGPSGSGLSKPEGLQKLAAGLGIADVVRFQPPVAQGRLADWFRAASVLVMPSHSESFGLVAIEAQAAGTPVVAASVGGLPVAVRDGRTGFLVSGHDPADYARVLRRFVDDPRLTGRMGAAAAEHARGFGWDTAASATAEVYTAAMHEHRRRVRSHHG
>CP029188.1|AWI32931.1|1449808_1450651_+|SAM-dependent-methyltransferase
MPPRPVTPSPRPVGTVTRGTTNPNRLRRMDRWIAAVHGPALRRSAAAPVAVDLGYGAAPWTAVELLARLRAAEPRTRVVGVEIEPARVAAARPYARDGLSFVHGGFEVPLPGPVRPLVIRAANVLRQYDEEQVAEVWRRLCARLAPGGLLVEGTCDEIGRRHVWVALGPEGPRTVTFATRLGSLDRPSDLAERLPKALIHRNVPGEPVHAFLRDFDRAWAAAAPYASLGARQRWIRAVRLLAADWPLTDAGTDGRRRWRQGEVTVEWAALAPGSSRTDPG

Crispr_ID: CP029188_8

• CRISPR_ID: CP029188_8
• CRISPR_location: 1529312-1529417
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_8

Consensus_repeat	Method
CCCGACGCCCCGGGACGGGTGACGGC	CRISPRCasFinder

spacers of CP029188_8

>8.1|1529338|54|CP029188|CRISPRCasFinder
AAGAGCGTGACGCACCCCACGGCACCGGAGCGGGTGACCCCGGAGGCACGTGCG

CRISPR arrays and Neighbor proteins around CP029188_8

CRISPR arrays

The CRISPR arrays of CP029188_8

>merge|CP029188|8|1529312-1529417|CRISPRCasFinder
CCCGACGCCCCGGGACGGGTGACGGCAAGAGCGTGACGCACCCCACGGCACCGGAGCGGGTGACCCCGGAGGCACGTGCGCCCGACGCACCGGGACGGGTGACGGC

>CP029188|8|8|1529312-1529417|CRISPRCasFinder
CCCGACGCCCCGGGACGGGTGACGGC	AAGAGCGTGACGCACCCCACGGCACCGGAGCGGGTGACCCCGGAGGCACGTGCG
CCCGACGCACCGGGACGGGTGACGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28527.1|1529486_1530815_+|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl|CDD|379143
CP029188.1|AWI28520.1|1519186_1521097_+|RNA-polymerase-subunit-sigma-24	unknown	unknown	gnl|CDD|377970
CP029188.1|AWI28524.1|1525542_1527024_+|MFS-transporter	unknown	unknown	unknown
CP029188.1|AWI28528.1|1531151_1532186_-|peptidase	unknown	unknown	gnl|CDD|366703
CP029188.1|AWI28525.1|1527139_1528357_+|L-2-hydroxyglutarate-oxidase	unknown	unknown	gnl|CDD|183292
CP029188.1|AWI28533.1|1536793_1537447_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28532.1|1536513_1536783_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28530.1|1533987_1534749_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|377906
CP029188.1|AWI28517.1|1514120_1515821_-|PAS-sensor-protein	unknown	unknown	gnl|CDD|369272
CP029188.1|AWI28526.1|1528404_1529253_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl|CDD|234649
CP029188.1|AWI28521.1|1521436_1522306_+|IS5-family-transposase	unknown	unknown	gnl|CDD|379129
CP029188.1|AWI28519.1|1518029_1518794_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
CP029188.1|AWI28523.1|1522677_1524825_-|asparagine-synthase	unknown	unknown	gnl|CDD|273676
CP029188.1|AWI28529.1|1532620_1533760_-|hypothetical-protein	unknown	unknown	gnl|CDD|369272
CP029188.1|AWI28531.1|1535461_1535662_-|hypothetical-protein	unknown	unknown	gnl|CDD|187665
CP029188.1|AWI28522.1|1522333_1522669_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28518.1|1516067_1517690_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224172
CP029188.1|AWI32932.1|1537845_1539249_-|type-VII-secretion-associated-serine-protease-mycosin	unknown	unknown	gnl|CDD|274856
CP029188.1|AWI32933.1|1539278_1540775_-|hypothetical-protein	unknown	unknown	gnl|CDD|236090
CP029188.1|AWI28534.1|1540867_1541356_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28527.1|1529486_1530815_+|PrsW-family-intramembrane-metalloprotease	gnl|CDD|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	4.63356e-50
CP029188.1|AWI28520.1|1519186_1521097_+|RNA-polymerase-subunit-sigma-24	gnl|CDD|377970	pfam08305, NPCBM, NPCBM/NEW2 domain. This novel putative carbohydrate binding module (NPCBM) domain is found at the N-terminus of glycosyl hydrolase family 98 proteins. This domain has also been called the NEW2 domain (Naumoff DG. Phylogenetic analysis of alpha-galactosidases of the GH27 family. Molecular Biology (Engl Transl). (2004)38:388-399.).	4.90557e-32
CP029188.1|AWI32932.1|1537845_1539249_-|type-VII-secretion-associated-serine-protease-mycosin	gnl|CDD|274856	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin. Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium. [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair].	4.26072e-96
CP029188.1|AWI28528.1|1531151_1532186_-|peptidase	gnl|CDD|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.24377e-37
CP029188.1|AWI28525.1|1527139_1528357_+|L-2-hydroxyglutarate-oxidase	gnl|CDD|183292	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase.	0
CP029188.1|AWI28530.1|1533987_1534749_-|MerR-family-transcriptional-regulator	gnl|CDD|377906	pfam07739, TipAS, TipAS antibiotic-recognition domain. This domain is found at the C-terminus of some MerR family transcription factors. The domain has an alpha-helical globin-like fold. The family includes Mta a central regulator of multidrug resistance in Bacillus subtilis.	1.16525e-38
CP029188.1|AWI28517.1|1514120_1515821_-|PAS-sensor-protein	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.31363e-51
CP029188.1|AWI28526.1|1528404_1529253_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl|CDD|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	2.04498e-91
CP029188.1|AWI28521.1|1521436_1522306_+|IS5-family-transposase	gnl|CDD|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	8.26085e-27
CP029188.1|AWI28519.1|1518029_1518794_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.24219e-09
CP029188.1|AWI28523.1|1522677_1524825_-|asparagine-synthase	gnl|CDD|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	0.000156039
CP029188.1|AWI28529.1|1532620_1533760_-|hypothetical-protein	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.80393e-41
CP029188.1|AWI28531.1|1535461_1535662_-|hypothetical-protein	gnl|CDD|187665	cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs. 17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	0.00399962
CP029188.1|AWI28518.1|1516067_1517690_-|FAD-dependent-oxidoreductase	gnl|CDD|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	5.19772e-101
CP029188.1|AWI32933.1|1539278_1540775_-|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.00172933

Protein sequences

>CP029188.1|AWI28526.1|1528404_1529253_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEFENAIAAVPHGDAPRDVATLAVPDGDAPRRAATARPGGAPRFPDGPAADPAGAHHERRIRSFQPRRSRVTAGQAAALRRLWPVWGLDIDGLRTLDLDAMFGGLPVVLEIGFGMGEATAQMAAADPGTGILAVDVHTPGQGNLLALAERAGLDNVRVANGDAIILLREMLPPAALDGVRVYFPDPWPKKRHHKRRLIQPEFLTLAASRLKPGALLHCATDWEPYAEQMLEVLTGHPDFENTQTGGGYAPRPAFRPLTRFEGQGLDKGHVVHDLLFRRRSG
>CP029188.1|AWI28525.1|1527139_1528357_+|L-2-hydroxyglutarate-oxidase
MVTAAAFDCDVLVIGGGIIGLSTAYALTRAAPGTSVVVLEKEQGPARHQTGRNSGVIHSGIYYRPGSLKARFAVRGAAETVKFCAEYGVPHEVTGKLIVATGREELPRLHALAQRGRENGIPVRELGPAQMAEYEPEVAGVAAIRVGTTGVCDFGAVAGQLAEVSAASGAEIRYGEEVRSVDTRPWGVAVGTSSGLVVRARTLVNCAGLHCDRVAALAGERPGMRIVPFRGEYYELARPELVRGLVYPVPDPAFPFLGVHLTRGVEGGVHVGPNAVPALAREGYGWSTVRPGELAATLAWPGSWRIARRHWRYGAGELHRSLSKRAFTAAVRRLLPAVAEEDLRPAAAGVRAQAVLRDGTLVDDFMIRESARAVHVLNAPSPAATAALPIGREVARRALAHLGGV
>CP029188.1|AWI28524.1|1525542_1527024_+|MFS-transporter
MPAGRLCVEGWRMSREQRGPNEKLGTVLALAGISNAGLARRVNDLGAQRGLTLRYDKTSVARWVSKGMVPQGAAPHLIAAAIGQKLGRPVPLHEIGLADADPAPEVGLAFPRDVGEAVKAATELYRLDLAGRRAGGGGIWQSLAGSFSVSAYATPASRWLINPADSSVERSLRSAEGGEAPESPDDGQVRVGHSDVAKLREAAEDARRWDSKYGGGDWRSSMVPECLRVDAAPLLLASYSDEVGRALFGATAELTRLAGWMAFDTGQQEAAQRYYIQALRLSRAAADVPLGGYVLASMSLQATYRGFADEGVDLAQAAVERNRGLATARTMSFFRLVEARAHAKASDAAAAGAALKAAESWLERSREGDADPSWLGFYSYDRFAADAAECYRDLKAPRQVRRFTEQALSRPTEEYVRSHGLRLVVSAVAELESGNLDAACAAGTRAVEVAGRISSARTTEYVRDLLHRLEPYGDEPRVAELRERARPLLMAPA
>CP029188.1|AWI28523.1|1522677_1524825_-|asparagine-synthase
MRWLVGWSSIAASFGTAGSGGTRPSPSPSPSGDDSRTVHPVGAQLLWGDPDPLWAVGDWRPDEVRVVTAGPPPGPGGGTPAVRLAVLGCCAASDEELRVGLFAARGGALRHLTAWAGSYTAVVQVGRRITVTGDLAGARPVFYTPWANGTAYATAALPLADLIEAQLDIGHLAALLACPESPEALRDSTPYAGVKRIPPGHALILREGSREITGYEPVASLAVAAPQLDPDRAVETVRDALVDAVRARLTAPRHAPGALPPDPGPVPGMGPAERRAARGAPAPGIGADLSGGSASGTLALLAAGLPGVPGTILGHGTGAGERLLAVTFNDLATPQGREAEMERAGAIAENPRLHHVVVAAGAEALPYADLDGPLTDEPGPSLVEAERNRRRLVSGSADHFTGHGARQVLDAHPARLADLLMDRRRRPLLRPVSALARASAPTAGSLLVPLTVYRAARRLARTPYRTGLETAATRLPEANRRVPSVNGPLGASLAALSWSRPGPAARWLTGEALAEVSVRLQEAATRPTSVQRPGEARARAALARYAADHRVMEQASEVRSQRLHSPFLDNQVVRAARDLPEALRVQPGARTAVLRTVLAGAGVHDLPPGWGAPSQAASTTATRAGMRMSLPHLLDLFDTPLLADAGIVEARVVRKALRAASEGEPVPLDGLADLVSTELWLRRLLARRGTCWTGTEAPRRRAVASGVPRRPTLRA
>CP029188.1|AWI28522.1|1522333_1522669_+|hypothetical-protein
MLTTDSTSTWGGFVAADYYCADSENGDHVDDPSEDALFMLISDLNGADNTFVVVQPDEDDPAWFASVAVLDEGSYEIVRRDTRQREPDVTIETSINQIAGDLTKWLAARAT
>CP029188.1|AWI28521.1|1521436_1522306_+|IS5-family-transposase
MGRGDLSDEQWSVLESLLPAAGVSRRSPGRRRLVDGVRWRVRTGVPWRDLPTEYGPWQTVYGLFRRWQRQGVWVRLLTLLQARADAAGLITWEVNIDSTICRAHQHAAGARRDGNRQKEPPGGLTTEPDDHGLGRSRGGFTTKIHLACEQGQKPLSLLVTAGQRGDSPQFEPVLNAIRVPRAGQGRPRSRPLRVRGDKAYSSRANRAYLRRRGIRCTIPEPADQVRNRKRRGAAGGRPPAFDSQDYKARHAVECGISRLKQHRAVATRYDKLAVRFEAAVHVASIHQWL
>CP029188.1|AWI28520.1|1519186_1521097_+|RNA-polymerase-subunit-sigma-24
MSGDGHNEPRAGRTGEESDGLGGERGGRVPSQRGEASSGPSADASPSPPAPSDADLVMRMREGDDSAYEELFRRHSDAVRRYARTCCRDAHTADDLTAEVFTRTLQAVRGGAGPEQAVRAYLLTAVRRVAAAWARSARREHLVEDFAVFADQAARATEAPAEDTLELGADVRAMHAAERSMALRAFRSLPERWQAVLWHTTVEEEPPSAVAPLFGLTANATAVLAGRAREGLKQAYLQAHVSSALTSGGDCARYADRLGAYARGALRMRAERGLRKHLEACAGCRLAAGELDQVNSGIPALLPVAFIGWFAAGYSFKAAGVVAAGAAGAGAGAGATAGAAGAGSASGSPGGAGGAAAAEGLAAPVKAGIAAAVAAAVGAGLVWALAGGPEPRPHARPPAAKPVPAGPSAPGATPLPDPPDSAAPGAPPASAPRAPEPAPPSPAASPTPSRAPAPGPDGPGAAPAPVPPGPPGPPGPPAETAAPPPAPPPPTTVHRLDQLRYAVAGDHTKPEVRLGAQSWIWKRDGMSIGGTRYEHGVSVHAHSSVTIDLNRECLSYDALVGVDDMTLGLGAVRFSVYADGVRRWRSPVLRGGDQAVGVSVGLTGRKTLRLVVAPHDARPLAATAVADWARSRITCV
>CP029188.1|AWI28519.1|1518029_1518794_+|TetR/AcrR-family-transcriptional-regulator
MHIQDSHWSGAVATETGGDGRAGAAATSRPAPLRVDAQRNLEHVLRAAREVFGELGYGAPMEDVARRARVGVGTVYRRFPSKDVLVRRIAEEETSRLTEQARTALGQEEEPWSALSRFLRTSVASGAGRLLPPHVLRVGVADEPTAAEDAAREETRVPQQRLGIAAQPELRVVAPRPVPAAERDDAGAGELLDVVGQLVDRARGAGELRADVTVADVLLVIATAAPSLPDAAQQAAASARLLDILLEGLRSRPV
>CP029188.1|AWI28518.1|1516067_1517690_-|FAD-dependent-oxidoreductase
MVKAAHSRATNPGTTPGTPSRTRILVAGGGYVGMYTAIRLQQQLRRELEQGEVEIVVVSPAPYMTYQPFLPEAAAGSISPRHVVVPLRRVLNRCKIVIGEVRSVDHAKRTASFTTLASEEEGAGAVPIRYDELVLAPGSISRTLPVPGLAEYAIGFKTVEEAIGLRNHVIEQMDIASSTREPALRDAALTFVVVGGGYAGVEALAELEDMARYATRYYHNIKPADLKWVLVEASDRILPEVGEAMGTYAIRELRARNIDVRLGTRLDSCENRVAVLSDGSRLPTRTVVWTAGVKPAPVLAATDLPLNERGRLKCTAELTVEGAEHAWSAGDAAAVPDVTAQVPGTECAPNAQHAVRQTKVLAENIVASLRGQPLKTYAHKYVGSVASLGLHKGVAHVYGRKLKGYPAWLMHRAYHLSRMPTFNRKARILAEWTLSGLFKREIVSLGSLEHPRAEFELAAGGVPSRPLARRHEDPPMSARESRRRQAPRTGPGPSAASAAASGDALGGTQGGTQGGTPGDTPGEDRRRRDPDAPGPGSGAG
>CP029188.1|AWI28517.1|1514120_1515821_-|PAS-sensor-protein
MNFTRWSARLPGTQRRAAARTDRRSVPAARGEYDRRPDLRPDATDVVTEPRGAQDPSAESSVPELEHFPVRGLLDGLPALVVLVHGPEHQVSYVNEAYEAAFGPRATGAAAAAVCPELAELGLLPLLDQVLRSGKPRTVKSRRIRGGGSYTVTCLPAEAPDPHRDGESVKGVLVFAADVTAHAEAAERLRASESRHREAAVTLQRSLLPQELEQPDDLRIAADYRPGGTDAAVGGDWYDVITLGAGRTALVIGDVMGRGVRAAAVMGQLRTAVRAYARLDLPPHEVLQLLDGLASEIDPSQIATCVYAVHDPNEGRLVYASAGHLPVLVRDADGTVHRAEEPTGPPLGTGGWLHSSGTIPLQPGSTAVLYTDGLVERRGEDIDEGVAALERALAGATGSPQIVCDRLIRSLGVTADHDDDVAVLVLQHPARSAGDAELFHNAALELLGGVEAAPRARAFASGVLASWRFPVELRDLGVLAASELVANSLQHGTPPMRLRLRRTDRRLIIEVTDGDENLPRRRRAETEDEAGRGISIVATIASSWGCRRTPDGGKAVWCEFALPDGP
>CP029188.1|AWI28527.1|1529486_1530815_+|PrsW-family-intramembrane-metalloprotease
MSDWSPQPHPAARLAVPACDERPLFDAVPERARWRYKPRRDFWRSRAVRAWALITLLALSGLMILALVREQTGTEGFLVGLGLAVLPVPLLAAAFRWLDRVEPGPWRNLVFAFAWGACAAALVAIIANTFATRWIATATADPTHADTIGATVIAPVVEETAKAAAVLLLFLFRRQDFTGLVDGVVIAGFTATGFAFTENILYLGNAFGEDQEFGTSGFASVTAATFFVRIVMSPFAHPLFTVLTGIGFGLAAATARHRRVRRVALPLLGLLLAMGMHALWNGSGVLGPLGFYAVYAAFMVPAFGLLTWLAVWSRQRELRTVAAELPAYAAAGWLAPAEPLALSSMKARTMARDLAGRTHGPAAARAVSEYEAFATSLAFLRHRAGRGAAGPDFVAREQELLHHLWQRRDLAGPALTYAARATGRAWQPPPHLDYSGFNPYRG
>CP029188.1|AWI28528.1|1531151_1532186_-|peptidase
MASNKPALQEPPTTQWAPSDQWAPAPAAEEWNPTEESVRPVRGRHRVVKQRNALARSSTVLGVGVIAAVGAGGMATAQDKPAVSISLPDVIADKLPDPESLPGVGSLMADDPADETVADGPLTTADAAGQGGDAGEALRARILQQAEQQQAEAEAEARAAAEQAAVEQAAAEAKRQKTEAAKAAEAAAEAERKAAEEAARKAEAERLAKLAASYSLPTSSYTLTSTFGQAGSLWSSGYHTGLDFAAPTGTPVKAVHGGTIKSAGWSGSYGYHIVLELADGTEVWYSHLSSMTVSAGQKVSTSETIGRVGATGNVTGPHLHLEVHTPGGDGIDPAAWLRGKGLSV
>CP029188.1|AWI28529.1|1532620_1533760_-|hypothetical-protein
MRHRERGRDGRQNGGRRFLAVLPWLMIVGGVVYDLGTPDTFTAAPLFTAAPLIAAPFFSMRYTLATGAAACAAVAGMHVYSDRILRIPAITELLTVFTVSVLALFINRIVRRSGERLASARVVAEAAQRAVLPTPDERIDGLQVAARYEAAERDALIGGDLYAVQETPHGVRLIVGDVRGKGLDAVGTVALVLGAFREAAEQEVSLAGVAQRLERALAREGARDAGLESFEGFTTAVLAEIPRGGERVRVVNRGHPAPLLLAADGALLVLDPPVRALPLGMDLGTEPDLVSETSYPPGGTLLLYTDGLSEARDAHDVMYDPRRRLGGRAFSGPEELLDVVVADVRRHTGGAATDDMALLAVTRRVEQQSPRRRATPAHP
>CP029188.1|AWI28530.1|1533987_1534749_-|MerR-family-transcriptional-regulator
MLGMEWSIQEIARKAGTTSRALRHYGELGLLPPSRIGGNGYRYYDQDALVRLQRILLLRELGLGLPAIAQVLDGQRDTATALRTHLRLLEQERERIGRQIASVRTTLDRTEKGEELMAEEVFDGFDHTRYEEEVTERWGRAAYEKGDRWWRSLSEREKRDFQDRQVAIARDFGQALRDGLAPDGEEAQAIARRHCEWLSGTVTPTRSYVIGLGEMYVADPRFTATYDRHGEGTAAFVRDALKVYAERHLGEDR
>CP029188.1|AWI28531.1|1535461_1535662_-|hypothetical-protein
MASKARLEGGPDDLRGRVVPITPPGQELKIPHRGGYEHFKATTRHEDSPEGRLTVYEWWERTEVAE
>CP029188.1|AWI28532.1|1536513_1536783_+|hypothetical-protein
MTQEPRIVAGIRSSPGYVEQPRVTGRQVSGFDPHHVVADCAGTPTYFSLELGQKYHDAVDTPGTPRIQELFDTFVEAAGKRFGCSAPTS
>CP029188.1|AWI28533.1|1536793_1537447_+|hypothetical-protein
MTHGRHRLLITAVLTAALVTGCQSGTGGGATPLSLRGLTETADGMPDGGASTCPLTYDVAQAAKATGLDEATGPGPVQDDGDPVATAEGGKRAEPGEPLAENPGALVSCTFHIGKDDVQVHTVATRKPQAIAALAPVVQRLAGASMDDLSRYMKLAGDAKAGDVVVTDSGNVAAVRLKLDGDGDAYLLVGFGEAGTSAPDRRQQVADLAGTLADQVR
>CP029188.1|AWI32932.1|1537845_1539249_-|type-VII-secretion-associated-serine-protease-mycosin
MLTSTRQPARLHYALSVAVGVMLAGIATAPVHAETIRERQWHLDAMHADEMWETTTGRGITVAVIDSGVDKNVADLRGQVLDGMDYSGLEGDEHADQAGHGTGMASLIAATGARSKVNGSHGLAPGTKILPIKMPYATGGFGTETSGRRYSESLIKAIRFAADSEAKVINVSMGSANTPGKRNVGTPELTAAVKYALGKGKLIFAAVGNSGDVTNAVEYPAATPGVVGVAGVDQKAKPLENSQFGPQVDLAAPGKDIVGACPEGTQICGGTGTSASSALASASAALLWSQHPDWTNNQVLRVLMQTASGNDKGLSRDDVVGYGVIRPRIALKTPGDPGPADKYPIPGFTYEDAKPSSSEPAKPSGPAGSSDQPTVAPAASNDDSSATGLWIAAGIGAAVVLCAAIAVPVLRNRRRLSASTAPAVPPQYGGQQLYYPHAPTPPQRHGLGQQPHTTAHNEHREHDGGSP
>CP029188.1|AWI32933.1|1539278_1540775_-|hypothetical-protein
MTHQQLAALLASASPAGASDLATKLAQASSAITKIGEDLKEHVTNLPWHGEGGDAFRNWGGQTASATLRLGEYSKGASRWMEEISQAIAEAKAAMPPVTETTRAQSDLAKAREAKAFADDPAHRKDTDAGDAAKRAASDEAAARGRIEAARFEAAQRLRKLAQTYEFTAHQVNAATPPTFPPPAMYMEANKWRVPWGQQGVDGQDGTIAGNAGAPPEGTAAPYVKSGGTAVRQSGQPGTVAGAAAPEHPVGMEIDGLATLPAAPPSSPATSTGILPPGGRPDAGGMLPGLIPPAFGGGTVKPSAPPVPSVTGRPSVGGVRPPVLPGQGPLGSGTAGRLPRDSGVIGGRPVPPSAGSPARGIPRGTVVGGEGASARGPMGYNPAAGSGGGGARPGTAPGGRRYASETGGIVGGGPQQSGRPGTRPFTPGGSGLVSGTPTGTGGHGAAPAGRGGAAVPPPGQNGSSRRRDAQGGNRPDYLAEDEETWMQNGRRIVPPVID
>CP029188.1|AWI28534.1|1540867_1541356_-|hypothetical-protein
MAHGGEEAASPDTGTSFDTFYGVNPQAALAIEADKMKAFKKRVDDLLLALDGSEAAPGKMGDGRLPRAQLGSGDFGEAQFLFDSYTVVHDELEKLSKALGAQIEGMGLAVHSSRVGYENVDEDIRARMRAVNAEVESYYDRRRDPFVEDAPTKKEQDKETGF

Crispr_ID: CP029188_10

• CRISPR_ID: CP029188_10
• CRISPR_location: 1800948-1801007
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_10

Consensus_repeat	Method
TCACGGACGCCCCCGGCCCTGCG	CRISPRCasFinder

spacers of CP029188_10

>10.1|1800971|14|CP029188|CRISPRCasFinder
GAGGCCACTTCACG

CRISPR arrays and Neighbor proteins around CP029188_10

CRISPR arrays

The CRISPR arrays of CP029188_10

>merge|CP029188|10|1800948-1801007|CRISPRCasFinder
TCACGGACGCCCCCGGCCCTGCGGAGGCCACTTCACGTCACGGACGCCCCCCGGCTCTAC

>CP029188|10|10|1800948-1801007|CRISPRCasFinder
TCACGGACGCCCCCGGCCCTGCG	GAGGCCACTTCACG
TCACGGACGCCCCCCGGCTCTAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28751.1|1804248_1805049_+|DUF3097-domain-containing-protein	unknown	unknown	gnl|CDD|378628
CP029188.1|AWI28741.1|1794001_1795297_+|MFS-transporter	unknown	unknown	gnl|CDD|340883
CP029188.1|AWI28739.1|1792300_1792540_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28757.1|1814168_1814435_+|30S-ribosomal-protein-S20	unknown	unknown	gnl|CDD|376586
CP029188.1|AWI28753.1|1806158_1807391_-|coproporphyrinogen-III-oxidase	unknown	unknown	gnl|CDD|180172
CP029188.1|AWI28749.1|1802299_1803316_-|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl|CDD|234621
CP029188.1|AWI28746.1|1798973_1799705_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl|CDD|236959
CP029188.1|AWI28745.1|1797915_1798410_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28744.1|1797379_1797739_-|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl|CDD|238607
CP029188.1|AWI28738.1|1791085_1792108_-|PhoH-family-protein	unknown	unknown	gnl|CDD|376820
CP029188.1|AWI28743.1|1796443_1797352_-|ribonuclease-Z	unknown	unknown	gnl|CDD|274246
CP029188.1|AWI28752.1|1805332_1805839_-|mini-circle-protein	unknown	unknown	gnl|CDD|368218
CP029188.1|AWI28750.1|1803515_1804238_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293840
CP029188.1|AWI28748.1|1801162_1802299_-|molecular-chaperone-DnaJ	unknown	unknown	gnl|CDD|237654
CP029188.1|AWI28754.1|1807511_1809443_-|protein-phosphatase	unknown	unknown	gnl|CDD|369272
CP029188.1|AWI28742.1|1795412_1796414_-|adenosine-deaminase	unknown	unknown	gnl|CDD|236480
CP029188.1|AWI28755.1|1809889_1811839_-|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl|CDD|223953
CP029188.1|AWI28740.1|1792446_1793556_-|sugar-kinase	unknown	unknown	gnl|CDD|238917
CP029188.1|AWI28756.1|1812016_1813888_-|elongation-factor-4	unknown	unknown	gnl|CDD|235462
CP029188.1|AWI28747.1|1799701_1800775_-|2-nitropropane-dioxygenase	unknown	unknown	gnl|CDD|367316

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28751.1|1804248_1805049_+|DUF3097-domain-containing-protein	gnl|CDD|378628	pfam11296, DUF3097, Protein of unknown function (DUF3097). This family of proteins with unknown function appears to be restricted to Actinobacteria.	8.34894e-166
CP029188.1|AWI28741.1|1794001_1795297_+|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.02153e-13
CP029188.1|AWI28757.1|1814168_1814435_+|30S-ribosomal-protein-S20	gnl|CDD|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	6.29354e-23
CP029188.1|AWI28753.1|1806158_1807391_-|coproporphyrinogen-III-oxidase	gnl|CDD|180172	PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated.	0
CP029188.1|AWI28746.1|1798973_1799705_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl|CDD|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	8.03234e-76
CP029188.1|AWI28755.1|1809889_1811839_-|long-chain-fatty-acid--CoA-ligase	gnl|CDD|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	0
CP029188.1|AWI28749.1|1802299_1803316_-|heat-inducible-transcriptional-repressor-HrcA	gnl|CDD|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	7.45376e-154
CP029188.1|AWI28744.1|1797379_1797739_-|histidine-triad-nucleotide-binding-protein	gnl|CDD|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	3.78561e-52
CP029188.1|AWI28738.1|1791085_1792108_-|PhoH-family-protein	gnl|CDD|376820	pfam02562, PhoH, PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.	7.28383e-139
CP029188.1|AWI28743.1|1796443_1797352_-|ribonuclease-Z	gnl|CDD|274246	TIGR02651, Ribonuclease_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGRFAMs model TIGR02649, are designated ribonuclease BN. [Transcription, RNA processing].	8.01016e-117
CP029188.1|AWI28752.1|1805332_1805839_-|mini-circle-protein	gnl|CDD|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.71883e-39
CP029188.1|AWI28750.1|1803515_1804238_+|MBL-fold-metallo-hydrolase	gnl|CDD|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.71464e-45
CP029188.1|AWI28748.1|1801162_1802299_-|molecular-chaperone-DnaJ	gnl|CDD|237654	PRK14278, PRK14278, chaperone protein DnaJ; Provisional.	0
CP029188.1|AWI28754.1|1807511_1809443_-|protein-phosphatase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	3.65709e-43
CP029188.1|AWI28742.1|1795412_1796414_-|adenosine-deaminase	gnl|CDD|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.84951e-147
CP029188.1|AWI28747.1|1799701_1800775_-|2-nitropropane-dioxygenase	gnl|CDD|367316	pfam03060, NMO, Nitronate monooxygenase. Nitronate monooxygenase (NMO), formerly referred to as 2-nitropropane dioxygenase (NPD) (EC:1.13.11.32), is an FMN-dependent enzyme that uses molecular oxygen to oxidize (anionic) alkyl nitronates and, in the case of the enzyme from Neurospora crassa, (neutral) nitroalkanes to the corresponding carbonyl compounds and nitrite. Previously classified as 2-nitropropane dioxygenase, but it is now recognized that this was the result of the slow ionization of nitroalkanes to their nitronate (anionic) forms. The enzymes from the fungus Neurospora crassa and the yeast Williopsis saturnus var. mrakii (formerly classified as Hansenula mrakii) contain non-covalently bound FMN as the cofactor. Active towards linear alkyl nitronates of lengths between 2 and 6 carbon atoms and, with lower activity, towards propyl-2-nitronate. The enzyme from N. crassa can also utilize neutral nitroalkanes, but with lower activity. One atom of oxygen is incorporated into the carbonyl group of the aldehyde product. The reaction appears to involve the formation of an enzyme-bound nitronate radical and an a-peroxynitroethane species, which then decomposes, either in the active site of the enzyme or after release, to acetaldehyde and nitrite.	4.05143e-111
CP029188.1|AWI28756.1|1812016_1813888_-|elongation-factor-4	gnl|CDD|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP029188.1|AWI28740.1|1792446_1793556_-|sugar-kinase	gnl|CDD|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	2.25769e-54

Protein sequences

>CP029188.1|AWI28747.1|1799701_1800775_-|2-nitropropane-dioxygenase
MSSALTDLCRYPIVQAPMAGGASCPELAAAVSEAGGLGFLAAGYKTADGMYQEIKQLRRLTGRPFGVNLFMPQPAYADAAAVDVYRHQLAGEASWYDTPLGDPDSGRDDGYEAKLAVLRDDPVPLVSFTFGCPTAAAVARLKRAGTLTVVTVTTADEALAAQNTGADAVCVQGVEAGGHQGTHRDDPANDGAGVGLLALIAQIREAVPLPIVAAGGIMRGAQIAAVLAAGAEAAQLGTAFLVCPESGANVLHKQAMTSPLFGRTELTRAFSGRPARGLVNRFMSEHGPYAPAAYPEVHHLTSGLRKAAAKAGDPQAMALWAGQGHRLARDLPAGRLVEVLAAETAAASSALALRNPA
>CP029188.1|AWI28746.1|1798973_1799705_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MTAPVFLVGDVHTGTVTLDGPEGRHAVSVRRLRVGEEIVLTDGRGTGGYGTVAAVEGKDRLDVSVTELREEPEPAPRITVVQALPKGDRGELAVETMTETGVDVIVPWAAARCITQWKGDRGAKSLAKWRSTAREAGKQSRRLRFPEVAEAATTGQVARLLAGADLAVVLHEEGAEPLATAHLPSSGDIVLVVGPEGGVSPEELAAFAEAGARPCRLGSSVLRTSTAGTAASALLLGRSGRWS
>CP029188.1|AWI28745.1|1797915_1798410_-|hypothetical-protein
MLAVPVCAALTASGLMACDPGTSGGLSAMAVSYTTDRAGTRAFEEEGVRVHWLSCAARLATGASPSVRAAAGVDCEGETADGARITITGTVTQEIGGRCVHGDLTAKSDGRRVFRAYVLGDCNAPLPTPTRTPAPPPPAPGDGGAARPTVTVTITVTETRTSAG
>CP029188.1|AWI28744.1|1797379_1797739_-|histidine-triad-nucleotide-binding-protein
MAGEPQADCLFCKIVSGEVPATVVRETETTLAFRDINPQAPTHVLVIPKVHYPDAATLAGAEPGIAADILREAAEVAAMDKVDASGFRIVFNTGAGAGQTVFHTHAHVLGGRGLEWPPG
>CP029188.1|AWI28743.1|1796443_1797352_-|ribonuclease-Z
MSVRELVVLGTASQVPTRHRNHNGYLLRWDGEGILFDPGEGTQRQMLRAGVAAHDINRICVTHFHGDHSLGLAGVIQRINLDQVPHPVTAHYPASGRRFFERLRYATAYRETVRLTQAPIADGGVLADTPSYTLEARRLDHPVESFGYRLTEPDGRRMLPARLAAHGIKGPDVGRIQREGALGGVALEDVSEVRRGQRFAFVMDTRLCDGAYELAEGCDMLVIESTFLDEDVALATDHGHLTAGQAARVARAAGVRHLVLTHFSQRYSEPDEFARQARAAGFEGELSVAQDLVRVPVPRREA
>CP029188.1|AWI28742.1|1795412_1796414_-|adenosine-deaminase
MSLIPKAELHLHIEGTLEPELAFTLAERNGVELPYAGTEDLRRAYLFSDLQSFLDLYYGLMAVLHTADDFTELADAYLARAAAQGVRHAEIFFDPQAHTERGVPVGTVVEGLAHALDRAEERHGVSTRLIMCFLRDRSAESAMATLEAAKPYLHHITGVGLDSAEVGHPPSKFREVYAAAESLGLRKVAHAGEEGPPGYVREALDVLGVERIDHGLRSMEDPELVERLVREQVPLTLCPLSNVRLRAVDTLEEHPLRAMMGAGLLVTVNSDDPAYFGGYVGDTFHAVREALGLTQEQLRELARNSFRAAFLDQDEARRERCLAEVAGYDFDRE
>CP029188.1|AWI28741.1|1794001_1795297_+|MFS-transporter
MSSRLRAAWPLVAVFAVGYLASYLLPTVVGRLSAGLGLAPAQAGLVGSVLLLASSAAGFALASRVERFGPRRLARTGLVLAFAGYGAAAVTSAVPVVVMGVTVGGLGSGTATAVAAAGIAAQRDPHRVSALGLLSVSATAGALYLTIPRLGGGHTLPFAALAVAALAAWPATRRLDSPGARVSVPGVQGLPGPRASRPPLPHRRSGAVLAAAMLCWAMAQNALWGVSGRIGTTQAGLSEVTVGAVFAVALGAGLCGVVVAGTVGARFGRAVPIGAGTVLIALCVAVSSSARGLAAFAVGEVLWNTFYPVVLSYLIGLAASLDSRGRWAVLVGSASSLGVACGPMAGSLLSAHTGYPGMGLVLCAALLVVAVPMTAVAVHTSGRRPVPVPLPVPAPIRRSTAVAPAVLAEIPVPVAETAPAGSAGTAKVLAS
>CP029188.1|AWI28740.1|1792446_1793556_-|sugar-kinase
MITTDGEQQQHTAHIDPLAAVRTGGDPAYDVFLTGTVFLDIVFTGLDTAPVRGTETWARGMGQSPGGVANMATALARLGLRTSLAAAFGDDFYGDYCWDALEQGEGIDLSQSRTVPGWHSPVTVSMAYEGERTMVSHGHEAPLRETAPAAAPRARAAVASLAPGRLEPWIAEAAGRGARIFADVGWDESGRWDLRALHDLELCEAFLPNAEEAMRYTRTDCPRAAARALAEKVPLAVVTLGADGAYAVDGGSGEAAEVPAIGVEVLDPTGAGDVFMAGFVTGTLAGWPLADRLAFAGLTAALSVQEFGGSLSAPGWTEVAAWWQYVQGCEDQDPEALARYSFLAGLVPAPDRPWPLRRALPTIGFRRPV
>CP029188.1|AWI28739.1|1792300_1792540_+|hypothetical-protein
MRDGTVRTDGTDGTDGTGETAGTGRTGGTDETGEVGGTGGKFGPGLRRRQTGRRKPIVGSARRSGQGRSGAGTSPARKE
>CP029188.1|AWI28738.1|1791085_1792108_-|PhoH-family-protein
MTQTPTDQTLAPGQARAHFTVPAKHPMVTVLGSGDSLLRVIEKAFPAVDIHVRGNVISAVGDERHVALVQRLFDEMMLVLRTGQPMTEDAVERSIAMLREEDGGTAPETPSEVLTQNILSSRGRTIRPKTLNQKRYVDAIDKHTVVFGIGPAGTGKTYLAMAKAVQALQSKQVNRIILTRPAVEAGERLGFLPGTLYEKIDPYLRPLYDALHDMIDPDSIPRLMAAGTIEVAPLAYMRGRTLNDAFIILDEAQNTNPEQMKMFLTRLGFDSKIVITGDVTQVDLPGGTKSGLRQVREILDGVPDVHFSLLTSRDVVRHKLVGRIVDAYEQYDSRNGSNGK
>CP029188.1|AWI28748.1|1801162_1802299_-|molecular-chaperone-DnaJ
MATDYYAVLGVRRDASQDEIKKAFRRLARELHPDVNPDPKTQERFKEINAAYEVLSDPQKKQVYDLGGDPLSAAGGGGAGGFGAGGFGNFSDIMDAFFGTASQRGPRSRTRRGQDAMIRLEVELNEAAFGTTKDIQVDTAVVCTTCSGEGAAPGTSAQTCDMCRGRGEVSQVTRSFLGQVMTSRPCPQCQGFGTVVPTPCPECAGDGRVRSRRTLTVKIPAGVDNGTRIQLAGEGEVGPGGGPAGDLYVEIHELPHAVFQRRGDDLHCTVTIPMTAGALGTKVPLETLDGIEEIDIRPGTQSGQSIPLHGRGVTHLRGGGRGDLIVHVEVQTPSKLDPEQERLLRELAKLRGEERPMGQFQPGQQGLFSRLKDAFNGR
>CP029188.1|AWI28749.1|1802299_1803316_-|heat-inducible-transcriptional-repressor-HrcA
MLSERRLEVLRAIVQDYVGTEEPVGSKALTERHSLGVSPATVRNDMAVLEDEGYIAQPHTSAGRIPTDKGYRLFVDRLAGVKPLSSPERRAIQNFLESAVDLDDVVARTVRLLAQLTRQVAVVQYPSLTRSTVRHVELLALAPARLMLVLITDTGRVEQRHVDCPAPFSDTSLADLRARLNSRVVGRRFTDVPQLVQDLPESFDLEDRGTVSTVLSTLLETLVEDTEERLMIGGTANLTRFAHDFPLTIRPVLEALEEQVVLLKLLGEAKDPGMTVRIGHENLHEGLTSTSVVAVGYGSGDEAVAKLGVVGPTRMDYPGTMGAVRAVARYVGQILAES
>CP029188.1|AWI28750.1|1803515_1804238_+|MBL-fold-metallo-hydrolase
MDVRWEDFGWERLAGGVGRRRLPVWDATAGLVAGDTAVLLFDTGSTLREGAELREQAEALLGGRSVTHIALSHPHFDHVLGTAAFPETEVYGAVGVDGVLLRDRAALRDDAIRHGVPPQDAAMAADALVVPRHTVSGEWTLDLGGRRVMLANVGPGHSRHDLVLLVPGDREVVFCGDLVEESGDPQAGPDAIPSRWPAALDRLLALGGEDAVYVPGHGAAVDAAFVRAQRDELARRFGVP
>CP029188.1|AWI28751.1|1804248_1805049_+|DUF3097-domain-containing-protein
MRSYSPDLTPPWKRPAAVPEVPAEPGLVVEEVSTGFCGAVIRCEAGTVTLEDRFGKHRVFPLEPRGFLLEGKPVTLVRPSSGAPAGPARTASGSVAVPGARARVARAGRIYVEGRHDAELVEKVWGDDLRVEGVVVEYLEGVDDLPAVVAEFAPAADARLGVLVDHLVPGSKEARIAESVTDPHVLVAGHPYIDVWEAVKPSSLGISAWPSVPHGQDWKTGVCRALGWPPNTGAAWRHILSRVHSYKDLEPALLGRVEELIDFVTA
>CP029188.1|AWI28752.1|1805332_1805839_-|mini-circle-protein
MTRISDLPPAWDERTQLTTFLDYARDTARAKCAGVSAENARKALLPGSPLMTMSGLINHLRWVEYYWFQVVFLGEEDRGPWTEEDPDREMRVAVDFPLEQLLDEYAEQSARYRDLVAGNDLDSRAERAGGDGRHVDLRWILLHLTEETARHNGHLDILREMLDGTTGD
>CP029188.1|AWI28753.1|1806158_1807391_-|coproporphyrinogen-III-oxidase
MPSALPDGEPVPDDGALPPHALAGAGDRPLGFYLHVPYCATRCGYCDFNTYTASELRGTGGVLASRDNYADTLVEEIRLARKVLGDDPRQVRTVFVGGGTPTLLPAADLVRMLGAVRDEFGLADGAEITTEANPESVDPAYLAELRAGGFNRVSFGMQSARQHVLRVLDRTHTPGRPEACVAEARAAGFEHVNLDLIYGTPGESDDDWRASLDAAIGAGPDHVSAYALIVEEGTGLARRIRRGEVPMTDDDVHADRYLIADEVLAAAGFDWYEVSNWAASGGGRCLHNELYWRGADWWGAGPGAHSHVGGVRWWNVKHPGAYAAALADGRSPGAGREVLPEEDRRVERVLLELRLREGCPLDLLRPAGLAASRRALEDGLLEPGPYEAGRAVLTLRGRLLADAVVRDLVD
>CP029188.1|AWI28754.1|1807511_1809443_-|protein-phosphatase
MQQETTHRSVHLLPPYGDARPVARTSLPASPHTASAARRFVRAALADWTRLGLVTTRGTDRLADEADLVVSELATNAVVHAGTGVEVLARLDPAIGDDPAALVVEVSDRHPARAVRGDGPEPESTAPEEPEYGRGLHLVATLAASWGITYRPGLKTVWARLPLDGFACLPPAADCAAPRQRGARTADSLAPSPRGGVRDERGAECARGERGDERTRDERTWVGRGALSFLAEASDLLAGQLDEDMVTALAGQLLVPRLADWCAIWLDGEAGPAPRPARVWHADESAIEALREALAGDPPRLPDEPRGTAVPVRSPWPPAGRGSAVAFRLTVGARPLGTLLLGREAPPGVPDEAAALLEDFARRVGLAIGAARQYTRQATISRVLQRGLLPAQVARIPGVDSSLVYEPSDEGLAGGDFYDIFPAGSGGRWCFMLGDVQGSGPEAAVVTGLARPWLRLLAREGYQVAGVLDRLNGLLLDDALEAAEAAALMAVGHPAAGAAAAHEGPQSRFLSLLYGELAPLPEGGVRCTLACAGHPLPLLLRPDGTVRPAAASQLLLGVVGDVAYESQTFELTPGDTLLCVTDGVTERRSGHRMFDDEDGLARALADCAGLTAEGVADRIRRAVHAFAETPPDDDLALLVLQTR
>CP029188.1|AWI28755.1|1809889_1811839_-|long-chain-fatty-acid--CoA-ligase
MTSGATSQSCSNAAAGPEDVVSDTQNLIENRPPSVATLFVQRVAATPDAEAYRHPVPAASGQGPDEWKSLSWQEAADRVYAIAAGLIELGVRPEERVALASATRVEWILADLGILCAGAATTTVYPQTNAEESAYILADSESRVLIAEDATQLAKARERRAELPHLKHVVVIDEAGAQPAEGDPEGWVLSLAELEARGAAHLTDNPGAVKERVEAITAGQLATLIYTSGTTGRPKGVRLPHDNWSYMAKAIASTGLVTKDDVQYLWLPLAHVFGKVLTSGQIEVGHVTAVDGRVDKIIENLPVVQPTYMAAVPRIFEKVYNGVAAKARAGGAAKYKIFQWAAGVARAYAKESQDNYRRTGTASASLGLTMKHKVADALVYSKLREAFGGRLRAAVSGSAALSPEIGFFFAGAGIHILEGYGLTESSAASFVNPGEAYRTGTVGKPLPGCEVRIADDGEILLRGPGIMEGYHGLPEKTAEVLESDGWFHTGDIGELSPDGYLKITDRKKDLIKTSGGKYIAPAEVEGQFKAVCPFVSNILVHGADRNYCTALIALDEAAILGWAKENGLEGRPYAEVVAAPQTERLIEGYVQRLNGTLQRWQTIKKFRLLPRDLDVEHGELTPSLKLKRPVVEREYKDLIEGMYEGAREA
>CP029188.1|AWI28756.1|1812016_1813888_-|elongation-factor-4
MPATPPHVPEPSRTDPALIRNFCIIAHIDHGKSTLADRMLQLTGVVEQRQMRAQYLDRMDIERERGITIKSQAVRLPWAPTTGDDQGRTHILNMIDTPGHVDFTYEVSRSLAACEGTILLVDAAQGIEAQTLANLYLAMENDLTIVPVLNKIDLPAAQPEKFSEELANLIGCDPSDVLRVSAKTGMGVEALLDRVVREVPAPVGVKDAPARAMIFDSVYDSYRGVVTYVRVVDGQLNKRERIRMMSTGATHELLEIGTNSPEMLAADGLGVGEVGYLITGVKDVRQSKVGDTITQQTKGATEALGGYKDPKPMVFSGLYPLDGSDYPELRDALDKLQLNDAALVYEPETSAALGFGFRVGFLGLLHLDVIRERLEREFGLDLIATAPNVVYRVVMEDGTEHTVTNPSEFPEGKIADVHEPVVRATILAPSEFIGSIMELCQNRRGVLLGMDYLSEDRVEIRYTLPLAEIVFDFFDQLKSKTRGYASLDYEPTGEQGAQLVKVDILLHGDKVDAFSAITHRDQAYAYGVRLVAKLKELIPRQAFEVPVQAAIGSRVIARETIRAIRKDVLAKCYGGDISRKRKLLEKQKEGKKRMKMVGSVEVPQEAFIAVLSSDDSGGGKAKK
>CP029188.1|AWI28757.1|1814168_1814435_+|30S-ribosomal-protein-S20
MANIKSQIKRNKTNEKARLRNKAVKSSLKTAIRKAREAVAAGDVEKATVAAREASRKLDKAVSKGVIHKNAAANKKSALASKVASLQG

Crispr_ID: CP029188_11

• CRISPR_ID: CP029188_11
• CRISPR_location: 1849694-1849804
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_11

Consensus_repeat	Method
GCCCGCGGGCGAACGGCCACGGAACG	CRISPRCasFinder

spacers of CP029188_11

>11.1|1849720|59|CP029188|CRISPRCasFinder
AGAGTGTGCCCTGAGGGGCGCCCCGGGTGAGCGGGTGAGCGGGGTGCGCGGGCGGCCGG

CRISPR arrays and Neighbor proteins around CP029188_11

CRISPR arrays

The CRISPR arrays of CP029188_11

>merge|CP029188|11|1849694-1849804|CRISPRCasFinder
GCCCGCGGGCGAACGGCCACGGAACGAGAGTGTGCCCTGAGGGGCGCCCCGGGTGAGCGGGTGAGCGGGGTGCGCGGGCGGCCGGGCCCGCGGGCGAACGGTCACGGAACG

>CP029188|11|11|1849694-1849804|CRISPRCasFinder
GCCCGCGGGCGAACGGCCACGGAACG	AGAGTGTGCCCTGAGGGGCGCCCCGGGTGAGCGGGTGAGCGGGGTGCGCGGGCGGCCGG
GCCCGCGGGCGAACGGTCACGGAACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28782.1|1849907_1851344_-|GTPase-ObgE	unknown	unknown	gnl|CDD|237045
CP029188.1|AWI28786.1|1855669_1856773_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl|CDD|376768
CP029188.1|AWI32952.1|1852669_1853266_+|N-acetyltransferase	unknown	unknown	gnl|CDD|100048
CP029188.1|AWI28780.1|1845565_1847065_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl|CDD|133009
CP029188.1|AWI28784.1|1851747_1852068_-|50S-ribosomal-protein-L21	unknown	unknown	gnl|CDD|235510
CP029188.1|AWI28774.1|1837944_1839045_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28775.1|1839121_1839727_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28790.1|1861671_1862955_-|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl|CDD|223749
CP029188.1|AWI28773.1|1836823_1837960_+|peptidase-M48	unknown	unknown	gnl|CDD|320684
CP029188.1|AWI28785.1|1853639_1855418_+|hypothetical-protein	unknown	unknown	gnl|CDD|369025
CP029188.1|AWI28779.1|1843281_1845432_-|hypothetical-protein	unknown	unknown	gnl|CDD|367953
CP029188.1|AWI28787.1|1856918_1858331_+|glycosyl-transferase	unknown	unknown	gnl|CDD|340825
CP029188.1|AWI28778.1|1841930_1843037_-|glutamate-5-kinase	unknown	unknown	gnl|CDD|235460
CP029188.1|AWI28789.1|1860622_1861591_-|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl|CDD|224012
CP029188.1|AWI28788.1|1858327_1860463_+|glycosyl-transferase	unknown	unknown	gnl|CDD|340823
CP029188.1|AWI28772.1|1835700_1836321_-|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|234611
CP029188.1|AWI28777.1|1841220_1841694_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28783.1|1851478_1851733_-|50S-ribosomal-protein-L27	unknown	unknown	gnl|CDD|235464
CP029188.1|AWI28781.1|1847256_1849365_-|transferase	unknown	unknown	gnl|CDD|340847
CP029188.1|AWI28776.1|1839793_1841077_-|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|234685

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28782.1|1849907_1851344_-|GTPase-ObgE	gnl|CDD|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
CP029188.1|AWI28786.1|1855669_1856773_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl|CDD|376768	pfam02350, Epimerase_2, UDP-N-acetylglucosamine 2-epimerase. This family consists of UDP-N-acetylglucosamine 2-epimerases EC:5.1.3.14 this enzyme catalyzes the production of UDP-ManNAc from UDP-GlcNAc. Note that some of the enzymes is this family are bifunctional, in these instances Pfam matches only the N-terminal half of the protein suggesting that the additional C-terminal part (when compared to mono-functional members of this family) is responsible for the UPD-N-acetylmannosamine kinase activity of these enzymes. This hypothesis is further supported by the assumption that the C-terminal part of rat Gne is the kinase domain.	6.75525e-112
CP029188.1|AWI32952.1|1852669_1853266_+|N-acetyltransferase	gnl|CDD|100048	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.	3.53791e-51
CP029188.1|AWI28780.1|1845565_1847065_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl|CDD|133009	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.	1.01376e-73
CP029188.1|AWI28784.1|1851747_1852068_-|50S-ribosomal-protein-L21	gnl|CDD|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	7.10434e-39
CP029188.1|AWI28787.1|1856918_1858331_+|glycosyl-transferase	gnl|CDD|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	5.90128e-21
CP029188.1|AWI28790.1|1861671_1862955_-|nucleotide-sugar-dehydrogenase	gnl|CDD|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	3.09925e-121
CP029188.1|AWI28773.1|1836823_1837960_+|peptidase-M48	gnl|CDD|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	1.95148e-78
CP029188.1|AWI28785.1|1853639_1855418_+|hypothetical-protein	gnl|CDD|369025	pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus. This family represents the C-terminus of D-glucuronyl C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases catalyze the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans.	1.50137e-21
CP029188.1|AWI28779.1|1843281_1845432_-|hypothetical-protein	gnl|CDD|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	0.000223052
CP029188.1|AWI28778.1|1841930_1843037_-|glutamate-5-kinase	gnl|CDD|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
CP029188.1|AWI28789.1|1860622_1861591_-|UDP-glucose-4-epimerase-GalE	gnl|CDD|224012	COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane].	6.55633e-129
CP029188.1|AWI28788.1|1858327_1860463_+|glycosyl-transferase	gnl|CDD|340823	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins. Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT4 family of glycosyltransferases.	7.42518e-11
CP029188.1|AWI28772.1|1835700_1836321_-|nicotinate-nucleotide-adenylyltransferase	gnl|CDD|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	3.51765e-104
CP029188.1|AWI28776.1|1839793_1841077_-|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
CP029188.1|AWI28781.1|1847256_1849365_-|transferase	gnl|CDD|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	1.86686e-109
CP029188.1|AWI28783.1|1851478_1851733_-|50S-ribosomal-protein-L27	gnl|CDD|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	1.72939e-47

Protein sequences

>CP029188.1|AWI28781.1|1847256_1849365_-|transferase
MKVSFLIHTIYGIGGTIRTTLNLAEELAGRHEVEIVSVFRHRDEPLFAIDPRITVVPLVDTRPSSPGDETKHPLALEPSECVPAHEARFAEYSVLTDRRVREHYARSDADVVIGTRPGLVAYVARFAPARAVLIGQEHMTHHHHSPGLRAELRPHLAALDAFVTVSEGDAAVWREWMPLPGTRVPAIPNSVPEPVVPVSDLGGTTVVAAGRLAAEKQYDVLIEAFAEVVAVRPQWTLRICGWGRQKDRLRRRIDELGLYNHVHLMGPRSPIETEWAKGAIAVSTSRHESFGMTLVEAMRCGLPVVSTDCDYGPREIVADGVDGLLVPVGDRGAVAAALLRLIDDEPLRRRMGAAARSHAARFDPGPVAKRYEELFAALGAGTRPYLQGTAPAETGNDRPAPGPLVDCAAEQDGAVTVTLLGECTGRPVLVCCHPDAAVPDRVFPFDAAGRAVIPAGSGLAEGVWTCHIDPPPSCTAPPSVDPPPPCAARAQDGAAARPRLVARAVDQRGAMRAAERVRPGEPVRTLVPYVRHGGLTLRSWVRPAHAESGAITVGSRRITVSGRLLGQARPAGDPVLLLRRRGAHAGELEFPGARVGADGFRCTIPLAAPVAVQASAHDVWDLWLRPAPGAAPVRIGRVLDDVVEKGGIFPYPAVDLLKKRPLARVRAVVDGLRLRAPERVTVKMFFSAGNELVLNVVDKAMK
>CP029188.1|AWI28780.1|1845565_1847065_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MSVPHEAKPRTTAVVLAGGTGQRVGLAIPKQLLKIAGKAVIEHTLTIFEQAEAIDDVIVLMAPGFVPDVERIIAKAGLTKVRRVIEGGATRNQTTERAIAALGEGLAEGEDANVLFHDAVRPLLSQRVIADCVRALERYQAVDVAIPSADTIIVTRTHGGDGEFITDVPDRSRLRRGQTPQAFKLSTIRRAYEIAAGDPNFQATDDCSVVLKYLPDVPIYVVAGDEYNMKVTQPVDVFIADKLFQLASTAAPRQADEAAYRELLAGRTLVVFGGSYGIGADIAALAEEYGADVYALGRSTTGTHVENPEHVDDALSKAYAETGRVDYVINTAGVLRIGKLAETDNATIQEALNVNYLAPVQIARASYKYLAESKGQLLLYTSSSYTRGRAEYSLYSSTKAAMVNLTQALSDEWAAEGIRVNCVNPERTATPMRTKAFGQEPAGSLLSSEAVARTSLDVLLSELTGHVIDVRQQDPTRGAGEASGFEQALASVLDRQEDV
>CP029188.1|AWI28779.1|1843281_1845432_-|hypothetical-protein
MISSVIRLARVGSRSELAAAVLMGLGYPCVMIAALIPDIWMFAAAAAVTYAADWYLHQRGSYLVNRLDKVRAGLPIRFLLRQLLLILLLARMGLAEEPLFYAAVAFFLLFYGLQAPHGALTTLIRLRRTMPVVTRNVDLNAVRIPDAPPRALLHRSGRKMLHLDIPAMAGVVVAAATGYDIAGYAGTALSVALGLAYTAALVPYLRRGRRVPSGPAVLKAVQKWLGEYQPTVALYFSGSEDSAYQVNMWLETMEQLEGRPIVVMRERGLVAKLNQTSVPVLCIPGGQHLMAMQFDSVRVALYPANVGKNIHMLRVPTMKHVFIGHGDSDKLASVNPFSKVYDEVWTAGRAGRDRYAIADVGVRDDDIVEVGRPQLAPIESWTGAPRNPVPTILYAPTWEGWDNNPGNTSLLLAGENIVRRLLEAERPVRLIYKPHPFTGIRNKKALAAHERITAMVRKAAAERAADPRWAGEAAAGQDERAAARAALARIEARLAELAKPGRAGGDEAEESRVSLADPERLAEIKRLRAEWNGAYWRSLGWWEHTVVTGSQPTLYDCFNESDAMVSDISSVVSDFIASGKPYAVTDSAELGAEEFRRQNTAVRAAVVLSNGAGELDRLLAAVADPAADTLAGARAELRKYLLGPDEPSSIEQFDAAVRALAAKAEARNAGVRQRVGEQAIGELDRESDAGAQGAEAEGNGGAGGTGGAGAAAAAAR
>CP029188.1|AWI28778.1|1841930_1843037_-|glutamate-5-kinase
MTEARRVVVKVGSSSLTTASGGLDADRVDALVDVLAKVRSGGEKEIVLVSSGAIAAGLAPLGLARRPKDLARQQAAASVGQGLLVARYTASFARYGVRVGQVLLTTDDTSRRAHYRNAYRTLDQLLAMGAVPVVNENDTVATDEIRFGDNDRLAALVAHLVRADLLVLLSDVDGLYDGDPGRPGTSRIAEVGGPADLAGVEIGSAGKAGVGTGGMVTKVEAARIAAAAGVPVVLTSASRAADALAGRDTGTYFRRTGRRSADRLLWLAHASTPQGALTLDDGAVQAVVEGRKSLLPAGIAAVDGEFTAGDPVELRDAGGRAVARGLVNYDSRELPLLLGRSTRDLARELGPAYEREVVHRDDLVVLNP
>CP029188.1|AWI28777.1|1841220_1841694_-|hypothetical-protein
MDAGPDLERPADLGAGDGLTRADGPHRREREAGEDTEPHAGERALSRLWHITLCVSGAEAPLNEVRRGLEQLAHDHPFLLTSRYADDHAEIRYWEEARDLHDAAAVALRLWGEHRSSAKLPPWEIVGLEVIDRETYHQRIAEGYGPPPATPVGVHPF
>CP029188.1|AWI28776.1|1839793_1841077_-|glutamate-5-semialdehyde-dehydrogenase
MTSLSPYDNLTPVTRAAYRARAAAADIAPLPRAVKDDALLAIADALEVRTSEIVEANAEDIARAREAGTSEAIVDRLTLTPERVRAIAADVRHVAALPDPVGEVVRGSTLPNGIDLRQVRVPLGVVGIIYEARPNVTVDAAALCLKSGNAVLLRGSSSAYSSNTALVRVVRDAVGGSGLPADAVQLVPGESRESVRELMRARGLVDVLIPRGGASLIRTVVEESTVPVIETGTGNCHVYVDAQADLDMAVEILVNSKAQRPSVCNAAETLLVHQDIAGAFLPRALQALAEAGVTVHADERTLALAEGSKATVVPATDEDWETEYLSYDIAAAVVDSLDKAVEHIRLWSSGHTEAIVTTSQAAARRFTRLVDSTTVAVNASTRFTDGGQFGFGAEIGISTQKLHARGPMGLPELTSTKYIVTGDGHTR
>CP029188.1|AWI28775.1|1839121_1839727_-|hypothetical-protein
MPDDVGGRPFPDGWEPDDDRGGADQDFASVVFDEDFVRAAEIHEPSAVERLLAAAQARAEAEAARARSGAGPADDELYDDGRGPADYGRERGHGDLDPDGLDGYADPYGPHGGALRPYRGAARWYRPVAWVLAVVMGVGMVALAFTAVYRGAAAGRQDRVPTPTTTGVDVPARGTVPDRGTHPSASAEYSAPPVSAVPRTP
>CP029188.1|AWI28774.1|1837944_1839045_-|hypothetical-protein
MAGRGDPPEGTPEGLPGGNDDEYRSVVFDESFVRAARLQEFSAQERMGDHARAVRSRPGWGLRKGPRHFLVLVLLIAMAFGAALYMGVRHPYRPPEPQPVQALRSTVVPLAPEGTVAAGDPAGLYARSPAADFRAGAAGITLPAVRHTRNFSDDQVMTALTIAKDYLVGSSLDPAVLTEGAVRPVRVLLDPDQLNQFDRSMNDPEDDGRHAATGWLVRFDPDRVALASPEVRVRGALAFAEAGPDALEVTTDHTFAYTVRPAGAGEGAAAGADGRTADDASLFTVRRQLHFRFDRDDLRAHRAELLLSYTQAGPMSCAADAAAVMQPLLAGQRATGKGPAGTDPYDSGRAAAAVCGTLSSAGQPSR
>CP029188.1|AWI28773.1|1836823_1837960_+|peptidase-M48
MTDRSSENVPGRHRTRFPGISSRAYEHPADRSALVALRRLSGFDTVFKALSGLLPERSLRLLFLSDSVRVSETQFAHLHTMLRDACYILDLEKVPQMYVTQDPKPNAMCIGLDEPIITVTTGLVELLDEEEMRAVVGHEVGHALSGHSVYRTILLFLTNLAVKVAWIPLGNMAVMAIVTALREWFRKSELSADRAGLLVGQDLQASMRGLMKIAGGNHLHEMNVDSFLEQAEEYEAGGDLRDSVLKILNMLPRTHPFTTVRAAELKKWAESRDYQRIMDGHYPRRTEDKDASVSDSFRESASHYADSVRGSKDPLMKLVGDIAGGAGDLGGRLRDRFTGAAAGGNRGGGNGGGNGSGPKDDGTGSGDDGPGATGQREG
>CP029188.1|AWI28772.1|1835700_1836321_-|nicotinate-nucleotide-adenylyltransferase
MGQQEVPTTGRGKRRLGVMGGTFDPIHHGHLVAASEVAALFHLDEVVFVPTGQPWQKSHKAVSPAEDRYLMTVIATASNPQFSVSRIDIDRGGPTYTIDTLRDLRALNTDSDLFFITGADALSQILTWRDAEELFSLAHFIGVTRPGHDLTDDGLPKGGVSLVEVPALAISSTDCRARVAQGDPVWYLVPDGVVRYIDKRQLYRGE
>CP029188.1|AWI28782.1|1849907_1851344_-|GTPase-ObgE
MTTFVDRVELHIAAGNGGHGCASVHREKFKPLGGPDGGNGGRGGDVVLTVDQSVTTLLEYHHSPHRKATNGKPGEGGNRSGKDGQDLVLTVPDGTVVLDKRGNVLADLVGHGTTYVAAEGGRGGLGNAALASARRKAPGFALLGEPGRSGDIVLELKTVADVALVGYPSAGKSSLISVLSAAKPKIADYPFTTLVPNLGVVTAGSTVYTIADVPGLIPGASQGRGLGLEFLRHVERCSVLVHVLDTATLESDRDPVSDLDVIEEELRHYGGLDDRPRIVVLNKVDVPDGKDLADMIRPDLEERGYRVFEVSAVARTGLKELSFALADIVAKARAARPKEEATRIVIRPKAVDDTGFTVTQEADGLFRVRGDKPERWVRQTDFNNDEAVGYLADRLNRLGVEEELMKAGARAGDGVAIGSEDDAVVFDWEPTMMAGAEMLGRRGEDHRFEAPRPAAQRRKDRQAERDEVTREYDDFEPF
>CP029188.1|AWI28783.1|1851478_1851733_-|50S-ribosomal-protein-L27
MAHKKGASSTRNGRDSNAQRLGVKRFGGQVVNAGEILVRQRGTHFHPGAGVGRGGDDTLFALQPGAVEFGTFRGRKVVNIVPVA
>CP029188.1|AWI28784.1|1851747_1852068_-|50S-ribosomal-protein-L21
MYAIVRSGGRQHKVAVGDIVEVDKISTAKVGDTVELSTLLVVDGDAVTSDPWVLAGIKVQAEVVDHHKGAKIDILRYKNKTGYRRRQGHRQQYTAIKVTAIPTAAK
>CP029188.1|AWI32952.1|1852669_1853266_+|N-acetyltransferase
MNYRVQPSAQVDETAEIGAGSSVWDLAQIREGALLGEGCVIGRGAYVGTGVRMGDNCKLQNYALVYEPAELGDGVFIGPAVVLTNDHNPRSVDPEGKQKRGGDWEAVGVRIADGASIGARSVCVAPVAIGRWSMVAAGAVVTKDVPDFALVVGVPARRIGWVGRAGVRLAEREGEPGVWECPQTGALYEEKDGVLTER
>CP029188.1|AWI28785.1|1853639_1855418_+|hypothetical-protein
MAESGGTARNRSAPESSAPEHRAPERSTLDRRGFIRLAGGTALGTALTGTGTGTGAGAAQAAPGPPAAARPLPRASLPPLPPLPDQLSGGMVTPPAPSVRAPRPDGTPATAAVRAARPDALPFAFHGNGYTATELPERLRPWRDRPTPWSAVTPDTTHTYLDPDGVIMYRPRRSAPGYDQPVTQIQFGLGCAAAYRTTTNPARRALYLRRAKAQAKRLIDRRVEARGAWYFPYPFDFTHGSHSGISYRAPWYSGMAQGEAISLFVQLSLLDGVTPEERALYRTAADGAFASLLRSDDGEPWVVNRDDEGYLWIQEYPVDPPGTSDRTYNGMIFAMFGLWDYARMTGNTLAARLYDGACTTVDHYFPTLRNRRWASYYCLTHRIPAPSYHQHHINLYRQLHWQTGSPRFAHMSDLLTDDHPSGILPEGSPVVLAAGTHTLYRYDTDADGDFVAARGDAELARRTVSFPRTTRATANRRRRIMGRGVAYRIDSGPHAGWWAGESHPRCHLLGEYLPSDYRPGRTLTFPAGSVVTCHRYGADGGTTATRTVAFDRASGAPFDRRSVVDGRPMCRIAGGALEGFWVHAGDVVTDGR
>CP029188.1|AWI28786.1|1855669_1856773_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKVISIVGARPQLVKLAPIAAAFAETAHEHVIVHTGQHYDADLSDVFFDGLGIPDPDVHLGVGSGSHGVQTGSVLSALDPVLEREKPDWVLVYGDTNSTIAGALSAVKMHLPVAHLEAGLRSFNRRMPEEHNRVLTDHCADLLLAPTEEAMRHLAGEGLADRARLAGDVMVDICLKIRDAVRAGEHPAPALPEGIDPSQPFLLATLHRPDNTDDPQRLSAILESLAKLPVPVALLAHPRLVARAEAHGINLAQGNVHVGRPLPYAGLVAAVLASTGVVTDSGGLQKEAFLLERICTTVRPETEWVETVDTGWNVLVPDPHSLSPEEWAATVTRAVPTADPGTPYGDGRAARNVVRIMEEWKGGSRHA
>CP029188.1|AWI28787.1|1856918_1858331_+|glycosyl-transferase
MIYLAIGFPPAAKSSAYRMRETANQFINVGWDVTVVNVAQESWERDSGVDLTLLDQVDPRVKIVELPLAREDLETDIRLYDEARALNPNGWVAQLRRRQTKPFPEPNFGEWRTDLEQAVLRIHQEHPADLLLASCVPYVNLAAAWKLWEEKRVPYAVDFRDGWSIDVIEGVEAFGPDSEEGRWERKILDEALSLWVVNDPIADHYRKRYPDFADRVHVVRNGYDADSSPGRAHAPDPESGLVFGYLGTVNFTPQHLETVLNAWKAAREKEPLLANARFEVRGHIGNGAGREANRHTEILKQAEADGVHFGGPAAKAEVASIYSGWDAMVLILIGGRYVTSGKVYEYMATGLPIVSAHVVEHDASNVLSGHPLWTGAVGIDEEGLTESFVRAAHMAVETSDEVHAEAMAHADQFTREALMTVAVKNLVEEFTAKHAAPGTREAAPGGAAAAGTGDVAPPAEKSIVAGGPTP
>CP029188.1|AWI28788.1|1858327_1860463_+|glycosyl-transferase
MTEVLFVAAAKPQFGVLADSVRKFNALGARVHLAATFHLESSAEEVAALELSGLHQLPRSVAHRSQALRRKARTSPLGMRVWMQAKRDSWLRERARRADVMVALDPGAVYTVWRLAQYNRGAAAVFGLAPGLKAVEGLTAQGGSVQRRSVLPPLDAVARDVRRSVDGLPAAVMRTATARPVMRSTVGARLWRTAVTAPGVPTRVRAATSRYVAEGMQWAGRTSGAAIALADAASKIPDLRLKAQLLDEGVMKEIAKGLNPRHLDRAVAAQLAHADREFAAGRLETAAGALDRALFLHFHRVLHIDQLSSPLAKDAEGFVAPLYRSGAMRALSRPQGRRTPYKKAPTDRPLRLLVTTSANDNFLHHILDHFGDHPGVELRFLDLAASKHLKRIAWAGRRMLEDRLSGGSSDYQEEVERLFRPYLDWADTVFLDWSVGPAGMLTTIDPGDTRIVVRLHSYEAFTRWPHMTDFSRIDDLVFVAPHVRDLAVSLVPQLRGDRAPRFHLVDNAMDLSGFARPKPAEARFNLGLIGISQVAKDPKWAVDVLERVRRHDERYRLILVGGDMDPKTSMATREYRREFEKELAPLEESGAVVRLGPTDDVPSKLQEIGTIISSSVREGCHVGLMEGAASAAVPVVRDWPFYAGKPNSARTLYPEGWVVGSPEEAAKRILEATATEEAWRNAGKLAAEHALSAWDWPVVRKHFEKLFLEDR
>CP029188.1|AWI28789.1|1860622_1861591_-|UDP-glucose-4-epimerase-GalE
MTWLITGGAGFIGSHVVKAMAEGGEHVVVLDDLSTGRAERLPAGVPLEIGTVLDRDTVDRVLRDHAVTGIVHIAGKKQVGESVEKPLHYYRENVEGLRVLLDAAVAAGVSRFLFSSSAAVYGMPDVDLVTEETPCAPINPYGETKLAGEWLVTAVGRVHPVATASLRYFNVAGAATPELADEGVFNLVPMVFERLTSGEAPRIFGDDYPTPDGTCIRDYIHVEDIASAHVAAARRLAADPEARLILNIGRGEGVSVADMVGIIQDVTGHPDVKPEVTDRRPGDPARVVASADRIRAELGWSARHEVREMVESAWAGWRLRHP
>CP029188.1|AWI28790.1|1861671_1862955_-|nucleotide-sugar-dehydrogenase
MNICVVALGKIGLPLAVQFAAKGHKVIGADVNEKVVELVNAGTEPFPGEHDLDVKLKQAVDAGLLSATTDTAAAVAQSEAVVVVVPLFVDAEGTPDFGWMDSATQAIAKGLKPGTLVSYETTLPVGTTRTRWAPMLEQGSGLTAGEDFHLVFSPERVLTGRVFADLRRYPKLVGGIDEASTARGVEFYEQVLDFDERGDLPQPNGVWDLGTAEASELAKLAETTYRDVNIGLANQFARFADKNGIDVKKVIEACNSQPYSHIHQPGIAVGGHCIPIYPRMYLWNDPEATVVRSAREANAAMPEYAVDLLAAAYGDLAGVNVLVLGAAYRGGVKETAFSGVFGTVEALKARGAVPFVSDPMYTAEELAAHGLTPHRGEKVTAAVLQADHAEYRELAASDLPDVTVLVDGRRTTDPTRWEGVRRVVIGG

Crispr_ID: CP029188_12

• CRISPR_ID: CP029188_12
• CRISPR_location: 2037509-2037621
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_12

Consensus_repeat	Method
GGGACTCGATGAGCACTCGCCGGGACTC	CRISPRCasFinder

spacers of CP029188_12

>12.1|2037537|57|CP029188|CRISPRCasFinder
GATGAGCACTCGCCGGGACTCGATGAGGACCCGCCGGGACCCGACGCCGGCCCCACG

CRISPR arrays and Neighbor proteins around CP029188_12

CRISPR arrays

The CRISPR arrays of CP029188_12

>merge|CP029188|12|2037509-2037621|CRISPRCasFinder
GGGACTCGTCGAGGACCCGCCGGGACTCGATGAGCACTCGCCGGGACTCGATGAGGACCCGCCGGGACCCGACGCCGGCCCCACGGGGACTCGATGAGCACCCGCCGGGACTC

>CP029188|12|12|2037509-2037621|CRISPRCasFinder
GGGACTCGTCGAGGACCCGCCGGGACTC	GATGAGCACTCGCCGGGACTCGATGAGGACCCGCCGGGACCCGACGCCGGCCCCACG
GGGACTCGATGAGCACCCGCCGGGACTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28895.1|2033057_2034215_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173849
CP029188.1|AWI28893.1|2030497_2031001_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28897.1|2035269_2035992_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|366166
CP029188.1|AWI28901.1|2040878_2042948_+|acetyl/propionyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl|CDD|227111
CP029188.1|AWI28905.1|2046454_2047333_+|NADPH-dependent-ferric-siderophore-reductase	unknown	unknown	gnl|CDD|99790
CP029188.1|AWI28892.1|2026271_2030132_-|hypothetical-protein	unknown	unknown	gnl|CDD|235334
CP029188.1|AWI28900.1|2039217_2040849_+|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl|CDD|178415
CP029188.1|AWI28888.1|2023765_2024086_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28899.1|2038527_2039118_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
CP029188.1|AWI28890.1|2025074_2025284_+|DUF397-domain-containing-protein	unknown	unknown	gnl|CDD|377231
CP029188.1|AWI28896.1|2034219_2035095_+|acyl-CoA-thioesterase-II	unknown	unknown	gnl|CDD|224857
CP029188.1|AWI28889.1|2024287_2025082_+|transcriptional-regulator	unknown	unknown	gnl|CDD|238045
CP029188.1|AWI28898.1|2037641_2038421_-|phosphatase	unknown	unknown	gnl|CDD|374030
CP029188.1|AWI28906.1|2047560_2049012_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|99743
CP029188.1|AWI28894.1|2031151_2032663_+|esterase	unknown	unknown	gnl|CDD|365866
CP029188.1|AWI28903.1|2043900_2045067_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173847
CP029188.1|AWI28904.1|2045410_2046451_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|223687
CP029188.1|AWI28891.1|2025925_2026186_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI28907.1|2048995_2050276_+|alcaligin-biosynthesis-protein	unknown	unknown	gnl|CDD|226017
CP029188.1|AWI28902.1|2042944_2043898_+|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl|CDD|163676

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28895.1|2033057_2034215_+|acyl-CoA-dehydrogenase	gnl|CDD|173849	cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.	1.58539e-141
CP029188.1|AWI28890.1|2025074_2025284_+|DUF397-domain-containing-protein	gnl|CDD|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	3.0478e-19
CP029188.1|AWI28897.1|2035269_2035992_-|alpha/beta-hydrolase	gnl|CDD|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.22004e-08
CP029188.1|AWI28905.1|2046454_2047333_+|NADPH-dependent-ferric-siderophore-reductase	gnl|CDD|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	7.87226e-79
CP029188.1|AWI28892.1|2026271_2030132_-|hypothetical-protein	gnl|CDD|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	5.58228e-17
CP029188.1|AWI28900.1|2039217_2040849_+|methylcrotonoyl-CoA-carboxylase	gnl|CDD|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
CP029188.1|AWI28904.1|2045410_2046451_+|ABC-transporter-substrate-binding-protein	gnl|CDD|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.26514e-26
CP029188.1|AWI28899.1|2038527_2039118_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.44461e-15
CP029188.1|AWI28898.1|2037641_2038421_-|phosphatase	gnl|CDD|374030	pfam15698, Phosphatase, Phosphatase. Members of this family have phosphatase activity.	6.82114e-137
CP029188.1|AWI28896.1|2034219_2035095_+|acyl-CoA-thioesterase-II	gnl|CDD|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	1.75261e-124
CP029188.1|AWI28889.1|2024287_2025082_+|transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.09373e-11
CP029188.1|AWI28901.1|2040878_2042948_+|acetyl/propionyl-CoA-carboxylase-subunit-alpha	gnl|CDD|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
CP029188.1|AWI28906.1|2047560_2049012_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl|CDD|99743	cd06450, DOPA_deC_like, DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.	7.66776e-124
CP029188.1|AWI28894.1|2031151_2032663_+|esterase	gnl|CDD|365866	pfam00089, Trypsin, Trypsin.	2.10925e-13
CP029188.1|AWI28903.1|2043900_2045067_+|acyl-CoA-dehydrogenase	gnl|CDD|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.44354e-162
CP029188.1|AWI28907.1|2048995_2050276_+|alcaligin-biosynthesis-protein	gnl|CDD|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	0
CP029188.1|AWI28902.1|2042944_2043898_+|hydroxymethylglutaryl-CoA-lyase	gnl|CDD|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	2.14049e-161

Protein sequences

>CP029188.1|AWI28897.1|2035269_2035992_-|alpha/beta-hydrolase
MADYLLVHGAMHGGWCWRTVRDLLTARGHRVLAPSLTGQGEHRHRLSPEVGVATHVEDLAALLWYEDLTDVRLVLHSYAGILAGPVAERSGERLTSVVFLGAFLVRPGQCLLDVEPPEVARRYRAQVAAAGEGRYLPADASFLAQWGVRDPELRAWAGPRLTDFPFRCQTDPVHFDPGPLDALHKVWVRHTEPFMPNLRPSLDLARSRGWEIRTIPCGHDMMLEAPEATARLLEDVAAGY
>CP029188.1|AWI28896.1|2034219_2035095_+|acyl-CoA-thioesterase-II
MSEALDDLLDLLDLERIEQDIFRGHSRPTIVPRVFGGQVAAQALVAAGRTVPDDRTAHSLHAYFLRMGDPGAPIVYTVDRIRDGRSFATRRVVAVQHGQPIFHLSASFQVHEEGLDHQASMPEAPDPETLPTAAERLPEYAGNTLHPEIVRRMLEARAAVDIRYVGRPPYASIGERREPHSQVWFRTNGKLADDPLLHVCLATYVSDMTLLDSVLLAHGRGGWAVGDVVGASLDHAMWFHRPFRADEWLLYDQESPSAHGGRGLGQARIYTQDGRLAISVIQEGVVRVPRD
>CP029188.1|AWI28895.1|2033057_2034215_+|acyl-CoA-dehydrogenase
MRRTVFNEDHEAFRETVRAFIEAEVVPVYDEWFAAGQAPRDFYYQLGELGIFGINVPEEFGGAGLDTHKFEAVLYEETARAGVNFGGSGVHVLLALPYIKMLATDEQKKRYLTKFVTGEEMWALAMTEPGTGSDVAGMKTTAKLSEDGTHYVLNGAKTFITGGVHADRVIVCARTSAPREDDRRFGISLFAVDTASEGYSIGRKLDKLGLRTSDTAELAFVDVKVPVEDLLGEENKGFYYLGQNLPSERWGIAFGAYAQAKAAIRFAKEYTQDRTVFGKTVASFQNTKFELAACQAEVDAAEAVADRALEALDAGELTPAEAASAKLFCTEVAHRVIDRCLQLHGGYGYMNEYPIARLYADNRVNRIYGGTSEVMKSIIAKSMGL
>CP029188.1|AWI28894.1|2031151_2032663_+|esterase
MSRTRNRSAVLAAALATVTGAAVLTTAPATAATGPGTPAGTQASAARLHIGEGDTARSCSGALVDRQWVLTAAACFAVDPANPTQVPAGKPALKTTATIGRSSLTGTGGHAADIAELVPSPAGDLVMARLTAPAATGIAPVELAASPAGEGDSLQAVGFGRTKTEWVPGTAHSASMKVGALSDTELTLTGATANDALCKGDTGAPLLRQTEGGTELVGIATRSRQGGCLGESETRTDAIAVRTDHLADWIATTAGRSWALLMTADDFNGDNKADLLTIDAADDHLYAQPGDGKGTFGKPVKVSPGKWTGMRLLAATDFTGDGKADILAAHTNGNLYLYPGNGKNGVTGSSVIGSGWGGIRLIAAADFNGDKKGDLIAAHTNGNLFFYPSNGKNFASGSVSSTGWTGMRMLSAGDFTGDGKADIYAVHNSGDLYLYSGKGNGTFNTAGKTGGGWQNMRLLSEADFNGDQKSDLIAIHTNGSIYAYPGKGNRGFGTPIVTPTPAV
>CP029188.1|AWI28893.1|2030497_2031001_+|hypothetical-protein
MAISRARAALFTTLTAATVAVAGIAMFGVANAAPQDGGTPSATELPYAVEDFTHPGAAQIQQDQQIVLKRGDGHITLVPCEGTTDITVKSRTGKKSYCFDVSAKQGYLTLELPDAFGIWTEAYPVTATITAGNEETVVRAAANDYQPIGEAGDNGERSVLVELRVTG
>CP029188.1|AWI28892.1|2026271_2030132_-|hypothetical-protein
MVMGAGLLGATPAYAQEERLEGSFGRYLAVHYWQTGGAGIREAAERALLGSDDDVRKFLDEAPAIEYDDDYVDASRIYNVGGVAVREATKKALKGTPEELQAFLRSGWQKPLEEDREVEASRVINFGGVGVREAGKAALKAGPEAVKEFLESGQYKERETDNEVEVSKLINFGGPNMKAAGKAALKGTPEDIAEFLAVGQFVARNRDQEHATIEQLTEQAEQAGLQAEAATKKSEEASARAIAASELAKEAAAKAARETEAARKDSVRAAYKAKQAAASARAAAAAAQTAIGAANAANRAARIAALAAAQTANAAAAAANAANNAYNSAIAAAGNASQADTAKKNAIAARKAAALARTAAAAVDQAAKASAAAGVAAAASRSAGANANAAADSAEEANRHAEAAGVHSAEARNAAAEARRHANAANRAANNATALAQRAAQQAYAARDAANSAAGHAEKAADAADLAAKYAGQSASAAADSRKWAEAAKTAADTATTAVSTAKQVHQVALDVETEELASRGEAALERARTEKAQNDQLVSATQSVIDQARALDGRAEVLAVEAATPDADVTATAAKGRKLALDALELRGPWHQQAAADALRGTDTDVLEYLRSGWGNAAAEETRDRVLQLSMDSPYPSVREGAAAALKGTAEQIADFYADGQYTVAETDLAVAVSKVNNFGGISVKDASKIALKDGSGKALAAFMEVGQYTARVTDEEVIASKLVNGGGEEVKAAAKAALAGPPGKLHEFIAVGQYTAARKDDLTATHRAQIGRLLAEGEIIAANAQANRWRAAEAAAKANKAATEAATAAGEAKKSVAAANGYAAAAKKSADAAAVSADQARKSATTARNAADAANRDADAAEASAAQAAFSAAYARQSAREASTSAENARYSAIAAGKSQAEAAAAASQAWTDVKRKREAEIAEAKRKAEEARKAEEARKKKEPGACGYTMVAGYAHPNPCEESDAFGLDDLVWELVGGADIEKCVKNPSWGDCAMAVVAVTPAGKLKIIKKGVDAVEDAATGTRRGKEVIACVREAAGDSFPAGTRVLMGDGTTRPIEQIKVGDQVVATDPGTGTTGPRRVDATIYTPDDRDFTSITLDQANGGGSLTATGHHPFWAENDQKWKNAANLTPEDTLRTPDGGAARINSVRHWTGLAPAYNLTVNDLHTYYVLAEQTPVLVHNSNCPWTSVRKYDGDGHPVDGTRIPTNDALDSAQKWLGSGYKETVPGSGRYVSRDGTRVARMGESDITGQHGGGPHMNFERLAPNPKKPGKMMVVENRHIYLE
>CP029188.1|AWI28891.1|2025925_2026186_-|hypothetical-protein
MEQVIVTPDYQPDEGLRFSWDEGFEITVSVTRSEVLIKANRAGLTSLARHLLTLAQDGVSNGMHVHLTADQEIESEIDLILERMAD
>CP029188.1|AWI28890.1|2025074_2025284_+|DUF397-domain-containing-protein
MTDRIIPNAAASSGWRKSSHSSGDGGSCVEVLDGHPAGVPVRDSKQPHGPAIVFEASIWSRFVATLKDA
>CP029188.1|AWI28889.1|2024287_2025082_+|transcriptional-regulator
MSNTYGEWLKAQREVAGLTQQELADSAIMTRSHIAHIEAGRRVPSKEDARRLDRALGTGDVLSSFLPRGDVAVADYFEAARQLEQQATVIQEFALSLVPGILQTEGYARAVLAPGATPRSEEECDRLLVTRLERGHVLAHPVTPLVCVLLDEAVLRRRVGNSRIMADQLDYIVRLAESERIRLHVLPFGVGYHQLLQGMLSLMMFDDQPPVAYGEGVLMGRLHDSPALVETLQRIYTLTLGDALPRKESIALLRATAKDYGPHD
>CP029188.1|AWI28888.1|2023765_2024086_-|hypothetical-protein
MLPSIARLLAPLLRLWWPPPPARLCLPRADGPRTPATHPPCPPRPTFAPAPYYRGEDSPLVRPYLLAHERRQAEALRGRARHRTLWLAVHGVDIGPRVVHGREAAA
>CP029188.1|AWI28898.1|2037641_2038421_-|phosphatase
MPIPNRAALVDHLVRTRIAGDVATPRDNNLSHYRRLANGDRHYWLGLELGDRWSDEQDVLAVMAERCGVNDDPQYRHGQDTIDPELTVDALDRMAARLKQAAAGRESVLFATGHPGGLLDVHRQIADALRSTGCEIVRIPSGLTADEGMVFQFADVAVLERGATLWHTHSPEPMAAILDGLERDGRTRPDLVVADHGWAGCAGQRGVDAVGFADSNDPALFIGEAEGTVQVTVPLDDHVTDPRFYDPMTAYLLDAAGLL
>CP029188.1|AWI28899.1|2038527_2039118_-|TetR/AcrR-family-transcriptional-regulator
MSTRTDAPTRREQILREAARLFAERGFHGVGVDEIGAAVGISGPGLYRHFPGKDAMLAELLVGISGRLLDGGRRRVAEADGVPEQVLASLIDGHIDFALDDRPLITLHDRELDRLRDSDRKLVRQLQRQYVELWVDVVRKLYPETGEGQVRAAVHAVFGLLNSTPHLGSYGNGLPGRAAMEDLLRRLAHGAFASLS
>CP029188.1|AWI28900.1|2039217_2040849_+|methylcrotonoyl-CoA-carboxylase
MRQAPVLTSAADPASDAWQANEAAHHALADALRAKLAAARLGGGEKARARHTARGKLLPRDRVDTLLDPGSPFLELAPLAADGMYDGQAPAAGVIAGVGRVSGREVVVVANDATVKGGTYYPMTVKKHLRAQEVALENRLPCVYLVDSGGAFLPMQDEVFPDREHFGRIFYNQARLSGARIPQIAAVLGSCTAGGAYVPAMSDEAVIVRNQGTIFLGGPPLVKAATGEVVTAEELGGGEVHSRISGVTDHLAENDAHALRIVRTIVSTLPGRGPLPWPVEPVEEPKVDPFGLYGAVPVDSRTPYDVREIIARITDGSRFAEFKAEFGTTLVTGFARIHGHPVGIVANNGILFAESAQKGAHFIELCDQRGIPLLFLQNISGFMVGRDYEAGGIAKHGAKMVTAVACTRVPKLTVVVGGSYGAGNYSMCGRAYSPRFLWMWPNAKISVMGGEQAASVLATVKRDQLEARGEEWPAEAEEAFKDPVRAQYEQQGNAYYATARLWDDGVIDPLETRQVLGLALTACANAPLAERDASAPGFGVFRM
>CP029188.1|AWI28901.1|2040878_2042948_+|acetyl/propionyl-CoA-carboxylase-subunit-alpha
MFDTVLVANRGEIAVRVIRTLRTLGVRSVAVFSDADADARHVREADTAVRLGPAPAAQSYLSAERLLEAARRSGARAVHPGYGFLAENAGFARACEEAGLVFIGPPAEAIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDDQLAEAAREIGMPVLLKPSAGGGGKGMRLTRVESALLEEIAAARREARASFGDDTLLVERWIDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQKIIEEAPSVLLDEEVRAAMGEAAVQAARSCGYRGAGTVEFIVPGGDPSSYYFMEMNTRLQVEHPVTELVTGLDLVEWQLRVAAGEELPFGQKDIALTGHAVEARICAEDPARGFLPSGGTVISLSEPAGDGVRTDSGLSEGTEVSSLYDPMLSKVIAYGPDRATALRRLRAALADNVTLGVPTNAGFLRRLLDHPEVVAGELDTGLVEREADSLVGGTVPPEVYAAAALLRETPAPVDASGWTDPFSVPGGWRLGGEPAWTVHHFRVPGHDPVEVRLRGSEAVLDGGPVRHVRHIGRAGGTAPGRGAGLGRGAVAGAGAGAATIGVEIDGVTHTFHHAAAPGGVWLGRDGDSWHVQDHDPVAASLSGAARQGADTLAAPMPGTVTVVKVAVGDEVDAGQSLLVVEAMKMEHVISAPHAGTVTELDVTPGATVVMDQVLAVVAPHDGEGQEGTP
>CP029188.1|AWI28902.1|2042944_2043898_+|hydroxymethylglutaryl-CoA-lyase
MTVGLPMEMPAGGLPPRVRIHEVGPRDGLQNEQQVVPTEVKAEFVHRLAGSGLTTVEATSFVHPKWVPQLADAEDLFPRLADIEGVVLPVLVPNERGLDRALTLGARRIAVFASATETFAARNLNRTVEESLAMFEPVVARAKDDEVHVRGYLSMCFGDPWEGAVPIRQVVRVARRLMDLGCDELSLGDTIGVATPGHVRALLAGLNEEGVPTDAVGVHFHDTYGQALANTLAALQHGVTTVDASAGGLGGCPYAKSATGNLATEDLVWMLHGLGIETGVDLGRLTATSVWMAERLGRPSPSRTVRALAGTASHKES
>CP029188.1|AWI28903.1|2043900_2045067_+|acyl-CoA-dehydrogenase
MSLDHRLSPEHEELRRTVEEFAHDVVAPKIGDLYERHEFPYEIVREMGRMGLFGLPFPEEYGGMGGDYLALGIALEELARVDSSVAITLEAGVSLGAMPVFRFGTEEQKREWLPRLCSGEILGAFGLTEPDAGSDAGGTKTTAVRDESTGEWVINGSKCFITNSGTDITGLVTVTAVTGRTDAGKPLISSIIVPSGTPGFTVAAPYSKVGWNASDTRELSFSDVRVPFANLLGEEGRGYAQFLRILDEGRIAIAALATGLAQGCVDESVKYAKERHAFGRPIGDNQAVQFKIADMEMRAHMARIGWRDAASRLVLGEPFKKEAALAKLYSSTVAVDNAREATQIHGGYGFMNEYPVARMWRDSKILEIGEGTSEVQRMLVARELGLSG
>CP029188.1|AWI28904.1|2045410_2046451_+|ABC-transporter-substrate-binding-protein
MPHARASHLTRRGLLAAGGVLGLTAALSACGSGDKEESTSDAKQSGPWQFKDDRGQVAEAKATPKNIVAFTGMAAALHDFGIEVKGVFGPTYVEDKAKGTRAPDVQAGDLDIDKVKILGNVWGEFNVEQYAALAPDLLITDMWEKDALWYVPDQSKDKILKLAPSVALSAADRSMPKVLQRHVELAESLGADVEAKKVTDAKAAFEKAAARLRAAAKAKPEIKVLVGSASADLFYVSSPARPTDTLYFKELGVNFVTPAKLDAGGWFEGLSWENVDRYQADIIMMDNRASALQPDALTSKPTWAQLPAVKAGQVVPRVTEPIYSYEKCTPILDDLAQAIENAKKVA
>CP029188.1|AWI28905.1|2046454_2047333_+|NADPH-dependent-ferric-siderophore-reductase
MPTAAAAPFRFFPLQVVRTRRLGPSLIRVTFGGGASRAEGSGGEALRGFASGGRDQSLSLFLPRPGQKEPVIPLPGEQDMYARLGAWRALPDDERAVMRSYTVRAQRPDAGEHGEIDIDFAVHEDGGPACRWAQQASTGDRVTVLGPAAADNTAVRFRPPEDADSVLIWADETALPAAAAALEWLPSGVRAQVWIEVPHAGDRMELTTSAEATVTWLVRDEGAPPAVEAVRAAEFAGSAPYAWIAGESGSVKALRRHLVNERGLDRRRVTFVGYWRKGLSEDALREAPDDDS
>CP029188.1|AWI28906.1|2047560_2049012_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MRSHLLNGTTAELYRSSVTEGVERVASKLATTRRPFTGVSPDELAPAIAAVDLDQPLGDSSAALDELERVYLRDAVYFHHPRYLGHLNCPVVIPAVLAEAVLSAVNSSLDTWDQSAGGTLIERKLIDWTTRRIGLGPAADGVFTSGGTQSNLQAMLLAREEVKPADREDLSKLRVFASECSHFSVQKSATLLGLGADAVVSVPVDRDRRMQTVALAAELEKCRRTGLVPMAVVATAGTTDFGSIDPLPEIAALCDEYGAWMHVDAAYGCGLLASPTRRALLEGIQHADSVTVDYHKSFFQPVSSSAVLVRDGATLRHATYHADYLNPRRTVEEKIPNQVDKSLQTTRRFDALKLWMTLRVMGADGVGRLFDEVCDLAAEGWRLLAADPRYDVVAEPRLSTLVFRYIPERVASPAEIDRANLYARKALFASGEAVVAGTKVDGRQYLKFTLLNPETTASDIAAVLDLIAGHAEQYLGENLVHAS
>CP029188.1|AWI28907.1|2048995_2050276_+|alcaligin-biosynthesis-protein
MSTPREHRDIHDFIGIGLGPFNLGLACLTEPVEELNGLFLESKPDFEWHSGMFLDGAHLQTPFMSDLVTLADPTSPYSFLNYLKEKGRLYSFYIRENFYPLRTEYNDYCRWAAAKLSSIRFGTTVTRVEFEAADEVYAVHTAAGETFRARRLVLGTGTPPYVPDSCRDLGGDFIHNSRYLQAREELRKKESITLVGSGQSAAEIYYDLLSEIDVHGYRLNWVTRSPRFFPLEYTKLTLEMTSPEYVDYFHALPEATRYRLETRQKSLFKGIDGDLINEIFDLLYQKNLGGPVPTRLLTNTALCSASYQDGSYTLGLRQEEQEKDFEIRTEGLVLATGYRYTVPGFLEPVHDRLRWDGRGRFDIARNYSIDTTGRGVFLQNAGVHTHSVTSPDLGMGAYRNAYIIAEMLGSEYYPVEKTIAFQEFAV

Crispr_ID: CP029188_13

• CRISPR_ID: CP029188_13
• CRISPR_location: 2045157-2045264
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_13

Consensus_repeat	Method
GCCGCGCCGACCGCCGACCGACCCGG	CRISPRCasFinder

spacers of CP029188_13

>13.1|2045183|56|CP029188|CRISPRCasFinder
GGCGCCCAGACCGCTGCCGCGCCGGCGCCCCGACCACCCGGGGCGCCCGGACTCCG

CRISPR arrays and Neighbor proteins around CP029188_13

CRISPR arrays

The CRISPR arrays of CP029188_13

>merge|CP029188|13|2045157-2045264|CRISPRCasFinder
GCCGCGCCGACCGCCGACCGACCCGGGGCGCCCAGACCGCTGCCGCGCCGGCGCCCCGACCACCCGGGGCGCCCGGACTCCGGCCGCGCCGACCGCCGGCCGACCCGG

>CP029188|13|13|2045157-2045264|CRISPRCasFinder
GCCGCGCCGACCGCCGACCGACCCGG	GGCGCCCAGACCGCTGCCGCGCCGGCGCCCCGACCACCCGGGGCGCCCGGACTCCG
GCCGCGCCGACCGCCGGCCGACCCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI28895.1|2033057_2034215_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173849
CP029188.1|AWI28908.1|2050937_2052719_+|IucA/IucC-family-protein	unknown	unknown	gnl|CDD|226715
CP029188.1|AWI28897.1|2035269_2035992_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|366166
CP029188.1|AWI28912.1|2056034_2056556_-|universal-stress-protein	unknown	unknown	gnl|CDD|366180
CP029188.1|AWI32968.1|2050446_2050941_+|N-acetyltransferase	unknown	unknown	gnl|CDD|379237
CP029188.1|AWI28905.1|2046454_2047333_+|NADPH-dependent-ferric-siderophore-reductase	unknown	unknown	gnl|CDD|99790
CP029188.1|AWI28900.1|2039217_2040849_+|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl|CDD|178415
CP029188.1|AWI28904.1|2045410_2046451_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|223687
CP029188.1|AWI28899.1|2038527_2039118_-|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
CP029188.1|AWI28898.1|2037641_2038421_-|phosphatase	unknown	unknown	gnl|CDD|374030
CP029188.1|AWI28896.1|2034219_2035095_+|acyl-CoA-thioesterase-II	unknown	unknown	gnl|CDD|224857
CP029188.1|AWI28902.1|2042944_2043898_+|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl|CDD|163676
CP029188.1|AWI28901.1|2040878_2042948_+|acetyl/propionyl-CoA-carboxylase-subunit-alpha	unknown	unknown	gnl|CDD|227111
CP029188.1|AWI28906.1|2047560_2049012_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|99743
CP029188.1|AWI28911.1|2055290_2055860_-|hypothetical-protein	unknown	unknown	gnl|CDD|366504
CP029188.1|AWI28894.1|2031151_2032663_+|esterase	unknown	unknown	gnl|CDD|365866
CP029188.1|AWI28903.1|2043900_2045067_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173847
CP029188.1|AWI28907.1|2048995_2050276_+|alcaligin-biosynthesis-protein	unknown	unknown	gnl|CDD|226017
CP029188.1|AWI28910.1|2053296_2055114_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl|CDD|234729
CP029188.1|AWI28909.1|2052931_2053207_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI28895.1|2033057_2034215_+|acyl-CoA-dehydrogenase	gnl|CDD|173849	cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.	1.58539e-141
CP029188.1|AWI28908.1|2050937_2052719_+|IucA/IucC-family-protein	gnl|CDD|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	9.99671e-173
CP029188.1|AWI28897.1|2035269_2035992_-|alpha/beta-hydrolase	gnl|CDD|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.22004e-08
CP029188.1|AWI32968.1|2050446_2050941_+|N-acetyltransferase	gnl|CDD|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.19981e-59
CP029188.1|AWI28905.1|2046454_2047333_+|NADPH-dependent-ferric-siderophore-reductase	gnl|CDD|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	7.87226e-79
CP029188.1|AWI28900.1|2039217_2040849_+|methylcrotonoyl-CoA-carboxylase	gnl|CDD|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
CP029188.1|AWI28904.1|2045410_2046451_+|ABC-transporter-substrate-binding-protein	gnl|CDD|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.26514e-26
CP029188.1|AWI28899.1|2038527_2039118_-|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.44461e-15
CP029188.1|AWI28898.1|2037641_2038421_-|phosphatase	gnl|CDD|374030	pfam15698, Phosphatase, Phosphatase. Members of this family have phosphatase activity.	6.82114e-137
CP029188.1|AWI28896.1|2034219_2035095_+|acyl-CoA-thioesterase-II	gnl|CDD|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	1.75261e-124
CP029188.1|AWI28902.1|2042944_2043898_+|hydroxymethylglutaryl-CoA-lyase	gnl|CDD|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	2.14049e-161
CP029188.1|AWI28901.1|2040878_2042948_+|acetyl/propionyl-CoA-carboxylase-subunit-alpha	gnl|CDD|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
CP029188.1|AWI28906.1|2047560_2049012_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl|CDD|99743	cd06450, DOPA_deC_like, DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.	7.66776e-124
CP029188.1|AWI28912.1|2056034_2056556_-|universal-stress-protein	gnl|CDD|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	2.47075e-21
CP029188.1|AWI28894.1|2031151_2032663_+|esterase	gnl|CDD|365866	pfam00089, Trypsin, Trypsin.	2.10925e-13
CP029188.1|AWI28903.1|2043900_2045067_+|acyl-CoA-dehydrogenase	gnl|CDD|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	1.44354e-162
CP029188.1|AWI28907.1|2048995_2050276_+|alcaligin-biosynthesis-protein	gnl|CDD|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	0
CP029188.1|AWI28910.1|2053296_2055114_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl|CDD|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029188.1|AWI28911.1|2055290_2055860_-|hypothetical-protein	gnl|CDD|366504	pfam01184, Grp1_Fun34_YaaH, GPR1/FUN34/yaaH family. The Ady2 protein is required for acetate in Saccharomyces cerevisiae, and is probably an acetate transporter. A homolog in Yarrowia lipolytica (GPR1) has a role in acetic acid sensitivity.	3.72115e-15

Protein sequences

>CP029188.1|AWI28903.1|2043900_2045067_+|acyl-CoA-dehydrogenase
MSLDHRLSPEHEELRRTVEEFAHDVVAPKIGDLYERHEFPYEIVREMGRMGLFGLPFPEEYGGMGGDYLALGIALEELARVDSSVAITLEAGVSLGAMPVFRFGTEEQKREWLPRLCSGEILGAFGLTEPDAGSDAGGTKTTAVRDESTGEWVINGSKCFITNSGTDITGLVTVTAVTGRTDAGKPLISSIIVPSGTPGFTVAAPYSKVGWNASDTRELSFSDVRVPFANLLGEEGRGYAQFLRILDEGRIAIAALATGLAQGCVDESVKYAKERHAFGRPIGDNQAVQFKIADMEMRAHMARIGWRDAASRLVLGEPFKKEAALAKLYSSTVAVDNAREATQIHGGYGFMNEYPVARMWRDSKILEIGEGTSEVQRMLVARELGLSG
>CP029188.1|AWI28902.1|2042944_2043898_+|hydroxymethylglutaryl-CoA-lyase
MTVGLPMEMPAGGLPPRVRIHEVGPRDGLQNEQQVVPTEVKAEFVHRLAGSGLTTVEATSFVHPKWVPQLADAEDLFPRLADIEGVVLPVLVPNERGLDRALTLGARRIAVFASATETFAARNLNRTVEESLAMFEPVVARAKDDEVHVRGYLSMCFGDPWEGAVPIRQVVRVARRLMDLGCDELSLGDTIGVATPGHVRALLAGLNEEGVPTDAVGVHFHDTYGQALANTLAALQHGVTTVDASAGGLGGCPYAKSATGNLATEDLVWMLHGLGIETGVDLGRLTATSVWMAERLGRPSPSRTVRALAGTASHKES
>CP029188.1|AWI28901.1|2040878_2042948_+|acetyl/propionyl-CoA-carboxylase-subunit-alpha
MFDTVLVANRGEIAVRVIRTLRTLGVRSVAVFSDADADARHVREADTAVRLGPAPAAQSYLSAERLLEAARRSGARAVHPGYGFLAENAGFARACEEAGLVFIGPPAEAIALMGDKIRAKETVRAAGVPVVPGSSGSGLTDDQLAEAAREIGMPVLLKPSAGGGGKGMRLTRVESALLEEIAAARREARASFGDDTLLVERWIDRPRHIEIQVLADGHGNVVHLGERECSLQRRHQKIIEEAPSVLLDEEVRAAMGEAAVQAARSCGYRGAGTVEFIVPGGDPSSYYFMEMNTRLQVEHPVTELVTGLDLVEWQLRVAAGEELPFGQKDIALTGHAVEARICAEDPARGFLPSGGTVISLSEPAGDGVRTDSGLSEGTEVSSLYDPMLSKVIAYGPDRATALRRLRAALADNVTLGVPTNAGFLRRLLDHPEVVAGELDTGLVEREADSLVGGTVPPEVYAAAALLRETPAPVDASGWTDPFSVPGGWRLGGEPAWTVHHFRVPGHDPVEVRLRGSEAVLDGGPVRHVRHIGRAGGTAPGRGAGLGRGAVAGAGAGAATIGVEIDGVTHTFHHAAAPGGVWLGRDGDSWHVQDHDPVAASLSGAARQGADTLAAPMPGTVTVVKVAVGDEVDAGQSLLVVEAMKMEHVISAPHAGTVTELDVTPGATVVMDQVLAVVAPHDGEGQEGTP
>CP029188.1|AWI28900.1|2039217_2040849_+|methylcrotonoyl-CoA-carboxylase
MRQAPVLTSAADPASDAWQANEAAHHALADALRAKLAAARLGGGEKARARHTARGKLLPRDRVDTLLDPGSPFLELAPLAADGMYDGQAPAAGVIAGVGRVSGREVVVVANDATVKGGTYYPMTVKKHLRAQEVALENRLPCVYLVDSGGAFLPMQDEVFPDREHFGRIFYNQARLSGARIPQIAAVLGSCTAGGAYVPAMSDEAVIVRNQGTIFLGGPPLVKAATGEVVTAEELGGGEVHSRISGVTDHLAENDAHALRIVRTIVSTLPGRGPLPWPVEPVEEPKVDPFGLYGAVPVDSRTPYDVREIIARITDGSRFAEFKAEFGTTLVTGFARIHGHPVGIVANNGILFAESAQKGAHFIELCDQRGIPLLFLQNISGFMVGRDYEAGGIAKHGAKMVTAVACTRVPKLTVVVGGSYGAGNYSMCGRAYSPRFLWMWPNAKISVMGGEQAASVLATVKRDQLEARGEEWPAEAEEAFKDPVRAQYEQQGNAYYATARLWDDGVIDPLETRQVLGLALTACANAPLAERDASAPGFGVFRM
>CP029188.1|AWI28899.1|2038527_2039118_-|TetR/AcrR-family-transcriptional-regulator
MSTRTDAPTRREQILREAARLFAERGFHGVGVDEIGAAVGISGPGLYRHFPGKDAMLAELLVGISGRLLDGGRRRVAEADGVPEQVLASLIDGHIDFALDDRPLITLHDRELDRLRDSDRKLVRQLQRQYVELWVDVVRKLYPETGEGQVRAAVHAVFGLLNSTPHLGSYGNGLPGRAAMEDLLRRLAHGAFASLS
>CP029188.1|AWI28898.1|2037641_2038421_-|phosphatase
MPIPNRAALVDHLVRTRIAGDVATPRDNNLSHYRRLANGDRHYWLGLELGDRWSDEQDVLAVMAERCGVNDDPQYRHGQDTIDPELTVDALDRMAARLKQAAAGRESVLFATGHPGGLLDVHRQIADALRSTGCEIVRIPSGLTADEGMVFQFADVAVLERGATLWHTHSPEPMAAILDGLERDGRTRPDLVVADHGWAGCAGQRGVDAVGFADSNDPALFIGEAEGTVQVTVPLDDHVTDPRFYDPMTAYLLDAAGLL
>CP029188.1|AWI28897.1|2035269_2035992_-|alpha/beta-hydrolase
MADYLLVHGAMHGGWCWRTVRDLLTARGHRVLAPSLTGQGEHRHRLSPEVGVATHVEDLAALLWYEDLTDVRLVLHSYAGILAGPVAERSGERLTSVVFLGAFLVRPGQCLLDVEPPEVARRYRAQVAAAGEGRYLPADASFLAQWGVRDPELRAWAGPRLTDFPFRCQTDPVHFDPGPLDALHKVWVRHTEPFMPNLRPSLDLARSRGWEIRTIPCGHDMMLEAPEATARLLEDVAAGY
>CP029188.1|AWI28896.1|2034219_2035095_+|acyl-CoA-thioesterase-II
MSEALDDLLDLLDLERIEQDIFRGHSRPTIVPRVFGGQVAAQALVAAGRTVPDDRTAHSLHAYFLRMGDPGAPIVYTVDRIRDGRSFATRRVVAVQHGQPIFHLSASFQVHEEGLDHQASMPEAPDPETLPTAAERLPEYAGNTLHPEIVRRMLEARAAVDIRYVGRPPYASIGERREPHSQVWFRTNGKLADDPLLHVCLATYVSDMTLLDSVLLAHGRGGWAVGDVVGASLDHAMWFHRPFRADEWLLYDQESPSAHGGRGLGQARIYTQDGRLAISVIQEGVVRVPRD
>CP029188.1|AWI28895.1|2033057_2034215_+|acyl-CoA-dehydrogenase
MRRTVFNEDHEAFRETVRAFIEAEVVPVYDEWFAAGQAPRDFYYQLGELGIFGINVPEEFGGAGLDTHKFEAVLYEETARAGVNFGGSGVHVLLALPYIKMLATDEQKKRYLTKFVTGEEMWALAMTEPGTGSDVAGMKTTAKLSEDGTHYVLNGAKTFITGGVHADRVIVCARTSAPREDDRRFGISLFAVDTASEGYSIGRKLDKLGLRTSDTAELAFVDVKVPVEDLLGEENKGFYYLGQNLPSERWGIAFGAYAQAKAAIRFAKEYTQDRTVFGKTVASFQNTKFELAACQAEVDAAEAVADRALEALDAGELTPAEAASAKLFCTEVAHRVIDRCLQLHGGYGYMNEYPIARLYADNRVNRIYGGTSEVMKSIIAKSMGL
>CP029188.1|AWI28894.1|2031151_2032663_+|esterase
MSRTRNRSAVLAAALATVTGAAVLTTAPATAATGPGTPAGTQASAARLHIGEGDTARSCSGALVDRQWVLTAAACFAVDPANPTQVPAGKPALKTTATIGRSSLTGTGGHAADIAELVPSPAGDLVMARLTAPAATGIAPVELAASPAGEGDSLQAVGFGRTKTEWVPGTAHSASMKVGALSDTELTLTGATANDALCKGDTGAPLLRQTEGGTELVGIATRSRQGGCLGESETRTDAIAVRTDHLADWIATTAGRSWALLMTADDFNGDNKADLLTIDAADDHLYAQPGDGKGTFGKPVKVSPGKWTGMRLLAATDFTGDGKADILAAHTNGNLYLYPGNGKNGVTGSSVIGSGWGGIRLIAAADFNGDKKGDLIAAHTNGNLFFYPSNGKNFASGSVSSTGWTGMRMLSAGDFTGDGKADIYAVHNSGDLYLYSGKGNGTFNTAGKTGGGWQNMRLLSEADFNGDQKSDLIAIHTNGSIYAYPGKGNRGFGTPIVTPTPAV
>CP029188.1|AWI28904.1|2045410_2046451_+|ABC-transporter-substrate-binding-protein
MPHARASHLTRRGLLAAGGVLGLTAALSACGSGDKEESTSDAKQSGPWQFKDDRGQVAEAKATPKNIVAFTGMAAALHDFGIEVKGVFGPTYVEDKAKGTRAPDVQAGDLDIDKVKILGNVWGEFNVEQYAALAPDLLITDMWEKDALWYVPDQSKDKILKLAPSVALSAADRSMPKVLQRHVELAESLGADVEAKKVTDAKAAFEKAAARLRAAAKAKPEIKVLVGSASADLFYVSSPARPTDTLYFKELGVNFVTPAKLDAGGWFEGLSWENVDRYQADIIMMDNRASALQPDALTSKPTWAQLPAVKAGQVVPRVTEPIYSYEKCTPILDDLAQAIENAKKVA
>CP029188.1|AWI28905.1|2046454_2047333_+|NADPH-dependent-ferric-siderophore-reductase
MPTAAAAPFRFFPLQVVRTRRLGPSLIRVTFGGGASRAEGSGGEALRGFASGGRDQSLSLFLPRPGQKEPVIPLPGEQDMYARLGAWRALPDDERAVMRSYTVRAQRPDAGEHGEIDIDFAVHEDGGPACRWAQQASTGDRVTVLGPAAADNTAVRFRPPEDADSVLIWADETALPAAAAALEWLPSGVRAQVWIEVPHAGDRMELTTSAEATVTWLVRDEGAPPAVEAVRAAEFAGSAPYAWIAGESGSVKALRRHLVNERGLDRRRVTFVGYWRKGLSEDALREAPDDDS
>CP029188.1|AWI28906.1|2047560_2049012_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MRSHLLNGTTAELYRSSVTEGVERVASKLATTRRPFTGVSPDELAPAIAAVDLDQPLGDSSAALDELERVYLRDAVYFHHPRYLGHLNCPVVIPAVLAEAVLSAVNSSLDTWDQSAGGTLIERKLIDWTTRRIGLGPAADGVFTSGGTQSNLQAMLLAREEVKPADREDLSKLRVFASECSHFSVQKSATLLGLGADAVVSVPVDRDRRMQTVALAAELEKCRRTGLVPMAVVATAGTTDFGSIDPLPEIAALCDEYGAWMHVDAAYGCGLLASPTRRALLEGIQHADSVTVDYHKSFFQPVSSSAVLVRDGATLRHATYHADYLNPRRTVEEKIPNQVDKSLQTTRRFDALKLWMTLRVMGADGVGRLFDEVCDLAAEGWRLLAADPRYDVVAEPRLSTLVFRYIPERVASPAEIDRANLYARKALFASGEAVVAGTKVDGRQYLKFTLLNPETTASDIAAVLDLIAGHAEQYLGENLVHAS
>CP029188.1|AWI28907.1|2048995_2050276_+|alcaligin-biosynthesis-protein
MSTPREHRDIHDFIGIGLGPFNLGLACLTEPVEELNGLFLESKPDFEWHSGMFLDGAHLQTPFMSDLVTLADPTSPYSFLNYLKEKGRLYSFYIRENFYPLRTEYNDYCRWAAAKLSSIRFGTTVTRVEFEAADEVYAVHTAAGETFRARRLVLGTGTPPYVPDSCRDLGGDFIHNSRYLQAREELRKKESITLVGSGQSAAEIYYDLLSEIDVHGYRLNWVTRSPRFFPLEYTKLTLEMTSPEYVDYFHALPEATRYRLETRQKSLFKGIDGDLINEIFDLLYQKNLGGPVPTRLLTNTALCSASYQDGSYTLGLRQEEQEKDFEIRTEGLVLATGYRYTVPGFLEPVHDRLRWDGRGRFDIARNYSIDTTGRGVFLQNAGVHTHSVTSPDLGMGAYRNAYIIAEMLGSEYYPVEKTIAFQEFAV
>CP029188.1|AWI32968.1|2050446_2050941_+|N-acetyltransferase
MLHRWVTDPKAAFWMMQDARLEDVEREYMRIAAHEHHDAFMGLHDGEPAFLMERYDPRHVELVGLYEPEPGDVGMHFLVAPTGTPIHGFTRAVITAVMRELFADPATRRVVVEPDVGNKAVHALNEAVGFVPEREIQKPEKRALLSFCTRERFEAAVGGAEVPR
>CP029188.1|AWI28908.1|2050937_2052719_+|IucA/IucC-family-protein
MSTAIDSVSHLTPELWAEANRQLVRKGLAEFAHERLLAPRDLGDGRWAVPSDDGRTEYRFAAGRLALDHWQVEADSVTRHRDGAELPLDALEFFTELRGALGLSDEILPVYLEEISSTLSGTAYKLTKPEVSAAELGRAGFQDIETGMTEGHPCFVANNGRLGFGIHEYHRYAPEAAAPVRLLWVAAHRSRAAFTSCADLGYENLMRAELGQAALDRFDARLRGLGLDPADYLLMPVHPWQWWNKLSVTFAAEVARRRLVLLGEGDDEYLAQQSIRTFFNTSDPSKHYVKTAMSVINMGFMRGLSAAYMEATPAINDWLAGLIASDDVLTAARFSIIRERAAVGYRHLEYEAATDRFSPYRKMLAALWRESPVPTLQDGERLATMAALLHTDRSGKSLAGALITESGLAPEQWLRRYLDAYLLPVLHCFYAYDLVYMPHGENVILVLGEDGTVQRAIFKDIAEEICVMDPDAVLPPAVERVRAEVPEDMKLLSVFTDVFDCFFRFLSAALVTEGVLTEDAFWRTVAECVTGYQESMPQLADKFARYDMFAPEFALSCLNRLQLRDNKQMVDLADPSGALQLVGELENPIARFR
>CP029188.1|AWI28909.1|2052931_2053207_+|hypothetical-protein
MLERRTSHDDLIDHLVRSTALRRGEAARVVLDVLAFFDETTEEFVRRRHRELQAGGGVNTEIFERIAAELPHRAVAPPELSLRQLRRIVYG
>CP029188.1|AWI28910.1|2053296_2055114_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGKRDVAPLLLEGLARLEYRGYDSAGMVITSPKSTGLKMVKAKGRVRDLEARVPKRFTGTTGIAHTRWATHGAPSDVNSHPHLDPENKVAVVHNGIVDNADELRAKLEADGVVFASETDTEVITHLIARSQAGTLEEKVREAVKVIEGTYGIAVMHADFSDRIVVARNGSPVILGVGEKEMLVASDVAALIAHTRQVVTLNDGEMATLKADDFRTYTTSGTTTTATPETVEWEAASYDMGGHDTYMHKEISEQPDAVDRVLRGRIDDRFSTVHLGGLNLDAREARGIRRVKILGCGTSYHAGLIGAGLIESLARIPADSEPASEFRYRNPVVDPDTLYIAVSQSGETYDVLAAVQELKRKGARVLGVVNVVGSAIARETDGGVYVHAGPEVCVVSTKCFTNTVVAFALLALHLGRIRDLSVAEGKRIIEGLRRLPAQISEILESEDEIRKLADEYAEAKSMMFIGRVRGYPVALEASLKLKEISYIHAEAYPASELKHGPLALIEPALPTVAIVPDDELLEKNRAALEEIKARSGRILAVAHQEQEKADHTILVPKNEDELDPILMGIPLQLFAYHTALALGRDIDKPRNLAKSVTVE
>CP029188.1|AWI28911.1|2055290_2055860_-|hypothetical-protein
MDKDVSAGSATSTTLGHLALGLTLLAFGIGNTGVIDNVAASDAAALATWVGGIALFVVGLLEFRAGDGGAGTAFAGLGAFWFTWGMGTGAEVSAEAAGLFMLLFALLALTLTLGASGSGILGQGVYGLLCVSMLLLAIASFAGNDGLAKAGGWAGAVAGLAAWYGATATLAHWPTFTGRAAGRGVTATG
>CP029188.1|AWI28912.1|2056034_2056556_-|universal-stress-protein
MAGHETPEPADRKQVADPLSDLQAAEQSRRSCDPAFRHGVVVGFDGSTSSERALAYAIGMARRSASGLIIVHVANRLPTTVWAGCEPPVFVDVPDHRTEVLGLELACADYLSEVPWILVERGGDICNELEEVGREYSADAIVVGSTHGLVGRIFGSVAGRLARRAQRPVIVIP

Crispr_ID: CP029188_15

• CRISPR_ID: CP029188_15
• CRISPR_location: 2569504-2569594
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_15

Consensus_repeat	Method
CACCCTTCGCCCCGCGCGGGTAGGAGTC	CRISPRCasFinder

spacers of CP029188_15

>15.1|2569532|35|CP029188|CRISPRCasFinder
CGGCCCCGCGCCCGATCCCGCAGTACCCCGACGCA

CRISPR arrays and Neighbor proteins around CP029188_15

CRISPR arrays

The CRISPR arrays of CP029188_15

>merge|CP029188|15|2569504-2569594|CRISPRCasFinder
CACCCTTCGCCCCGCGCGGGTAGGAGTCCGGCCCCGCGCCCGATCCCGCAGTACCCCGACGCACACCCGTCGCCCCGCGCGGGTAGGAGTC

>CP029188|15|15|2569504-2569594|CRISPRCasFinder
CACCCTTCGCCCCGCGCGGGTAGGAGTC	CGGCCCCGCGCCCGATCCCGCAGTACCCCGACGCA
CACCCGTCGCCCCGCGCGGGTAGGAGTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI29307.1|2565830_2566199_-|hypothetical-protein	unknown	unknown	gnl|CDD|283084
CP029188.1|AWI29314.1|2573680_2574727_-|transcriptional-regulator	unknown	unknown	gnl|CDD|367868
CP029188.1|AWI29316.1|2575861_2577292_-|rRNA-cytosine-C5-methyltransferase	unknown	unknown	gnl|CDD|237857
CP029188.1|AWI29313.1|2572883_2573285_-|ribonuclease-N1	unknown	unknown	gnl|CDD|238340
CP029188.1|AWI29303.1|2560842_2562537_-|amine-oxidase	unknown	unknown	gnl|CDD|366721
CP029188.1|AWI29305.1|2563638_2564094_-|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224439
CP029188.1|AWI29318.1|2579701_2580226_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI29306.1|2564104_2565577_-|amino-acid-permease	unknown	unknown	gnl|CDD|129987
CP029188.1|AWI29317.1|2577492_2578425_-|methionyl-tRNA-formyltransferase	unknown	unknown	gnl|CDD|234567
CP029188.1|AWI29304.1|2562577_2563390_-|carbon-nitrogen-hydrolase	unknown	unknown	gnl|CDD|143600
CP029188.1|AWI29302.1|2559865_2560570_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI29311.1|2570976_2572488_-|GuaB1-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl|CDD|181127
CP029188.1|AWI29309.1|2566633_2569207_-|histidine-kinase	unknown	unknown	gnl|CDD|377989
CP029188.1|AWI29301.1|2558544_2559756_-|endoglucanase	unknown	unknown	gnl|CDD|376532
CP029188.1|AWI29308.1|2566203_2566641_-|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl|CDD|367422
CP029188.1|AWI29312.1|2572524_2572887_-|hypothetical-protein	unknown	unknown	gnl|CDD|376530
CP029188.1|AWI29319.1|2580574_2582740_-|primosome-assembly-protein-PriA	unknown	unknown	gnl|CDD|237844
CP029188.1|AWI29300.1|2557159_2558566_+|nitrate-reductase	unknown	unknown	gnl|CDD|132655
CP029188.1|AWI29310.1|2569637_2570714_+|GDSL-family-lipase	unknown	unknown	gnl|CDD|238881
CP029188.1|AWI29315.1|2574802_2575486_-|ribulose-phosphate-3-epimerase	unknown	unknown	gnl|CDD|235515

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI29307.1|2565830_2566199_-|hypothetical-protein	gnl|CDD|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	2.89149e-22
CP029188.1|AWI29314.1|2573680_2574727_-|transcriptional-regulator	gnl|CDD|367868	pfam04198, Sugar-bind, Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.	4.28266e-75
CP029188.1|AWI29316.1|2575861_2577292_-|rRNA-cytosine-C5-methyltransferase	gnl|CDD|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	2.61753e-92
CP029188.1|AWI29313.1|2572883_2573285_-|ribonuclease-N1	gnl|CDD|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	2.85018e-40
CP029188.1|AWI29303.1|2560842_2562537_-|amine-oxidase	gnl|CDD|366721	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.	6.43903e-48
CP029188.1|AWI29305.1|2563638_2564094_-|Lrp/AsnC-family-transcriptional-regulator	gnl|CDD|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	5.02616e-30
CP029188.1|AWI29306.1|2564104_2565577_-|amino-acid-permease	gnl|CDD|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.02709e-164
CP029188.1|AWI29317.1|2577492_2578425_-|methionyl-tRNA-formyltransferase	gnl|CDD|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	1.50639e-168
CP029188.1|AWI29304.1|2562577_2563390_-|carbon-nitrogen-hydrolase	gnl|CDD|143600	cd07576, R-amidase_like, Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer.	1.31316e-121
CP029188.1|AWI29311.1|2570976_2572488_-|GuaB1-family-IMP-dehydrogenase-related-protein	gnl|CDD|181127	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein.	0
CP029188.1|AWI29309.1|2566633_2569207_-|histidine-kinase	gnl|CDD|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	8.65573e-26
CP029188.1|AWI29301.1|2558544_2559756_-|endoglucanase	gnl|CDD|376532	pfam01341, Glyco_hydro_6, Glycosyl hydrolases family 6.	3.29338e-61
CP029188.1|AWI29308.1|2566203_2566641_-|roadblock/LC7-domain-containing-protein	gnl|CDD|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	2.32848e-20
CP029188.1|AWI29312.1|2572524_2572887_-|hypothetical-protein	gnl|CDD|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	3.53862e-25
CP029188.1|AWI29319.1|2580574_2582740_-|primosome-assembly-protein-PriA	gnl|CDD|237844	PRK14873, PRK14873, primosomal protein N'.	0
CP029188.1|AWI29300.1|2557159_2558566_+|nitrate-reductase	gnl|CDD|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	7.09691e-105
CP029188.1|AWI29310.1|2569637_2570714_+|GDSL-family-lipase	gnl|CDD|238881	cd01844, SGNH_hydrolase_like_6, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.72618e-43
CP029188.1|AWI29315.1|2574802_2575486_-|ribulose-phosphate-3-epimerase	gnl|CDD|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	1.23251e-137

Protein sequences

>CP029188.1|AWI29309.1|2566633_2569207_-|histidine-kinase
MRPPTIRGRIVALTVVPAVALLALWSFAMVSVTGDLRALIRLQSVYETFGTPVDTAVGQIQIERRLAAAYLGAGRRDAGAADAAPLLAQQRSTDRAVQAMLDAVGDRDRREDLTDRQRESLDTMARAASRLDALRDRVVERRLSWSEAVEAYTVIVEPTFDVQSQLTALQAGQLAREAQVVVELVRVREFVSREDALVAGARAAGAVTDTQYDALTAAIEDRRVFHRTYVPDLPADSRKLFTDFQRSAEYRALTAGEDALLRAGAANAGQAVADASWRTTTDRAVKRYMLLCTRSALNAAERGRAFAYREMVEAAVVGFAGLAAAGFSVWLSVSAGRRIAGRLEELRDAADVLATRRLPEVMERLGAGEDVDPAAAAPPLDFADGDGEPDEIAQVGTALNAARRAAVEAAVKQATLRRGVFAVLLNIARRNQALVHRQAKLVDTLERRTTDPDTLEELFRIDHLTTRMRRHAEGLIILSGAAPGRRWRKPVPLVDVVGAAVGEIEDYPRVVVPPMPAVRVGADAVADVVHLVAELVENAAAFSPPHTRVTMRTSEARNGFVLEIDDRGLGMDGDELAQAHRTLARPGDFDPVQDERLGLYIVGRLAARHGITVTLTRSPYGGTTAVVLLPNAIITPADPADAADPDADPEAARIPVRSSAPDGRHGAAAAGVAVLAGTPGTPGTPGTPGTEERRTGRGTAPGADRGPAGPAPLSGPLPDGDPAQPGTGTGPAPRAGGGAQLPHAAAPRPLPTRIRQASLAAPLREGPPGAGQDPPGAEDREVSAEEMRAVFGAFQRGLERGRSGEPAGSGRAESERRTDGRAEGERRGSGRAESDPPGSAPGDRPGTRNDERTGDDG
>CP029188.1|AWI29308.1|2566203_2566641_-|roadblock/LC7-domain-containing-protein
MAEPYDGETGRTDASGLGWLLDDLLERTDHVRQAVLLTADGLVSCASRGMPQSDVEHLSAVCAGFHSLASETGSRFAAGKVRQTMVMLDGGYLFITPAGDGSRLAVLSGAETEVGQLAHEMALLVKRVGRHMTVPARSADEAPDA
>CP029188.1|AWI29307.1|2565830_2566199_-|hypothetical-protein
MNDHWYEDETGPLVRPYTVTHGRTRPATDHHIDLMSQVKAVEWDKPDPRLDHPRTALLELVRRAPRPVAEVAADADMPLAVVRVLLADLVEAGLVRVFEPPAGRGAHDPSLLREIADRLREI
>CP029188.1|AWI29306.1|2564104_2565577_-|amino-acid-permease
MLDHGAAPPVTPQRGPGGPAQGLGSRLMRRKPVEQLVAEGGQGEGGTLRRSLTMWQLTMISIGATLGTGIFVVLGEATPLAGPAVAISFVVAGLTALFSALSYAELAGSVPVSGSSYSYSYATMGELIAWVCGWCLVLEYGVSVAAVAVGWGEYLNELLHGTIGVTIPSAVGAPVGEGGFINLPALVVVLLAMVFLMGGAKESARVNTVMVVIKIVTLLLFIGIGFMGIKAGNYAPLAPLGVTGISAAAATLFFSYIGFDAASTAGEEAKNPKRDLPRAIMLSLLIVTVLYCLVALVAVGAMPWQDFEGTEAALAQIMKDVTGQSFWGVVLAAGAVVAIASVVFAVLYGQTRILFAMSRDGLVPKVFAKVNEKTGAPRANTVIVSLFCGVLAAFIPLGELANATSIGTLFAFALVNVAVVILRWKRPDMNRTFKVMLFPVTPILGFLFCAYMMLSLPGVTWVWFAGWMAAGLVFYFLYGLRRSRLATAEK
>CP029188.1|AWI29305.1|2563638_2564094_-|Lrp/AsnC-family-transcriptional-regulator
MRLNDLDERIVHALAEDARRSYADIGSLVGLSAPAVKRRVDRLRADGVITGFTVRVDPGAMGWETEGFIEIHARSNTSPETIKRGLERYPEVASASTVTGEADAIVQVFASDMRHFERVLERIAGEPFVERTKSVLVLSPLLRRFSSGAPA
>CP029188.1|AWI29304.1|2562577_2563390_-|carbon-nitrogen-hydrolase
MPPLRTALLQSSGTPGDIAKNLEILDTHAARAAAEGAGLLVAPEMFLTGYAIGADVHRLAETADGAGARAVAAIAARHGIAVVYGYPERGTGDEAEAVFNAAQLIGPGGERLANYRKTHLFGGFEKEWFTPGDESVVQAELGGLRVGLLICYDVEFPENVRAQALAGTDLLVVPTALMNPFRFVAEKLLPVRAFESQMYVAYANRTGPEGEFDFAGLSCLAGPDGIVRARAGLGEDLVTGDADPDLLAASRADNPYLRDRRPGLYGPLAR
>CP029188.1|AWI29303.1|2560842_2562537_-|amine-oxidase
MTSTVPTSVPHSDAQPPITMFGPDFPYAYDDFLAHPAGLGQIPATEHGTEVAVIGGGLSGIVAAYELMKMGLKPVVYEADRIGGRLRTVGFEGCDPSLTAEMGAMRFPPSSTALQHYIDLVGLETQPFPNPLAEATPSTVVDLKGESHYARTIDDLPQVYRDVAKAWNDCLEEGADFSDMNRAMRERDVPRIREIWAKLVEKLDNQTFYGFLCESEAFKSFRHREIFGQVGFGTGGWDTDFPNSILEILRVVYTEADDHHRGIVGGSQQLPLRLWERTPEKITHWTYGTSLAMLHADGEPRPAVTRLHRTAGNRITVTDASGDIRTYQAAIFTAQSWMLLSKIACDDSLFPIDHWTAMERTHYMESSKLFVPVDRPFWLDKDEQTGRDVMSMTLTDRMTRGTYLLDDGPDKPAVICLSYTWCDDSLKWLPLSASERMEVMLKSLGEIYPKVDIRKHIIGNPVTVSWEDEPYFMGAFKANLPGHYRYQRRLFTHFMQDRLPDDKRGIFLAGDDISWTAGWAEGAVQTALNAVWGVMHHLGGTTDATNPGPGDVFDDIAPVELPED
>CP029188.1|AWI29302.1|2559865_2560570_+|hypothetical-protein
MAKIAQYAAGGEAHRAPVDTVLARMRAFRSGWPVDDGIAVFNRVYLAVTEELGRRIDRGEFPDRRSAVTLQVLFAERYLAAADTVTAGGRAPACWRPLFQLRRHPGVRPLQFALAGINAHIGHDLGLAVVDTCRTLDCRPPDLEGDFDRVGEILTMLEERIREDLMPGPDLLEIADPLTHLLGSWSLERARDGAWSAARLLWGLRELPALAAEFTERLDAGVGLVGRCLLTPLR
>CP029188.1|AWI29301.1|2558544_2559756_-|endoglucanase
MSGVPDRRREERNGRRLAAGRGVMTTAASAVVALGAVAGLMSAADRGGEDDTARPEVRSSPVTVPLPARPSHPPPAPAEPSGPAEPSGPPPSPGRSAAPAPASPASRPAPRTGPEAAAGPLHRHPRSQVLDWVRKHRDDPRRPLIESRIAAHPAAVWFPEHDPGRIAGQVRAVTAGAAAAGRVPVLVPYAIPDRDCGGASQGGAPDLAAYDAWTGEFAAGLGDGPVIVILEPDSIALSGCLSDGVRAARYASLARAARTMKAANPRARVYFDAGHSGWHPAARQAAELRAAGAATSGDGIFTNVSNFHRTGDEVRYARRVLEALGGPPGLGAVIDTSRNGNGAPEQGAWCDPPGRALGRTPTTGTGEARIDAYLWVKLPGESDGCRGAAGTFTPDYAYELATG
>CP029188.1|AWI29300.1|2557159_2558566_+|nitrate-reductase
MNLGVRWSLHGDGRTPAPGAVVRPDERLSWPRTAGLGAQHVVAMFGASFVAPVLMGLDPNLAIMMSGIATMIFLLATRGRIPSYLGCSLSFVGVAATIRATGGDSATITGAILVVGAVLFLAGLAVRRFGARIIHTAMPPIVTGAVVMLIGFNLAPVTAATYWPQDQWTALLTMLFTGLAVVCLRGFWSRVAIFLGLLFGYGVSWLLDRILGKIHSPVGGAEAVDHWRLDLSGVGEAEWIGLPAFHAPAFEWSAILVALPVVIALIAENAGHVKAVGEMIGDPLDDKLGTAIAADGAASMLSSAVGGPPNTTYSENIGVMAATRVYSTAAYWAAALFALLFGLCPKFGAVVAAIPGGVLGGITVILYGMIGLLGAQIWINAKVDLRNPLNLVPAAAGIIIGVGGVSLKFGENFELGGIALGTIVVITGYHVLRAFAPAHMKPQEPLLDAGTSAYDEGDGGGGQPVASS
>CP029188.1|AWI29310.1|2569637_2570714_+|GDSL-family-lipase
MTPDPHWLDPEPFLRGVAWLDRGRPVRADPGDLARLPWDTRERAALPIGVRLEFTAPDGARAVEVRYRARVPGPTEALRDLAHCFALWHGDRCVAESFTEPAEEAAVTIPLPAAPGPFTVHPPESQAPVVLGVRGLGGRLAPAPRRPRWVVHGDSITEGWWSTRPAHAWPSAAGRALGLDCVNLGYAGSARGELATAQQLASLPADLLTLAFGTNCWSGVPCSAPLMYETTRAFVSLVRQGHPAVPLLVVSPLLRPDAETTRNALGATLRDLRTAIEEAVRDLVAAGDARLALLPGAGLLTADDLADGLHPNDRGHARIAAAVTGAVGRFGGAADPARTGALGVHPDPAGRAPARPSR
>CP029188.1|AWI29311.1|2570976_2572488_-|GuaB1-family-IMP-dehydrogenase-related-protein
MKYVRFLPGKCPGPLRIDWDVLHVRFLNDIKPPYDLTYDDVFMVPSRSAVGSRQGVDLASPDGTGTTIPLVVANMTAIAGRRMAETVARRGGLVVIPQDIPIDVVTDVITWVKTRHLVLDTPIVLTPHQTVADALSLLHKRAHGAGVVVDEEQRPVGVVTEHDLSGVDRFTQLAEVMSKDLLLVDADIDPREAFTRLDGANRKLAPAVDEDGRLAGILTRKGALRATLYTPATDADGRLRIAAAVGINGDVAGKAKQLLDAGVDTLVVDTAHGHQESMIAAIKAVRALDPRVPIAAGNIVAAEGVRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEAKKYGKHVWADGGVRHPRDVAMALAAGASNVMVGSWFAGTYESPGDLQQTADGRLYKESFGMASARAVRNRTSEESAYDRARKALFEEGISTSRMFLDPTRPGVEDLIDSIIAGVRSSCTYAGAGSLEEFAERAIVGIQSAAGYAEGKPLHASWN
>CP029188.1|AWI29312.1|2572524_2572887_-|hypothetical-protein
MRNGPLAALFGATPGRNITVLDLHGVTDKKTFMDRCAADLGLPAWFGRNWDALADCLTDLPGEEGTLVLVRRWQEYAAARPGEWRVAQDVFGHAVDTMPGQLAVLLALGGSDERASRGPG
>CP029188.1|AWI29313.1|2572883_2573285_-|ribonuclease-N1
MPNRSSPLVLVLLTALTALLLTGCPGGGAGTGHSPAATAPAALATVRTFDLPQEARETLRLIDDGGPFPYRKDGSTFGNLEGMLPERERGYYREYTVPTPGERDRGARRIVTGREGEVYYTDDHYQTFRVVLR
>CP029188.1|AWI29314.1|2573680_2574727_-|transcriptional-regulator
MNSSEESAVSAMSAGRSALRMGPAELVQAAAMARRFYLEGKSKIQIAEEFGVSRFKVARVLETALERDLVRIEIRVPAELDAERSDALRARYGLRHAVVVESPSDGADESPDPENLGEVAADLLGELVTEGDVLGLAWGRSTIHMAAALDRLPPCTVVQLTGVYDAGTAERGSVEAVRRAAQVSGGEAHPIYAPMLLPDPATAAALRNQTGIARAFEYFDKVTVACVSIGSWEPGISTVHDMLSDEERAHYASLGVAAEMSAHLFDADGRRVGRDLGERCITVEADRLRRIPEVVAIAGGQRKAAAIGAVLRSGLVTSLVTDTAAADYLLTESRPAPRPALERADPDH
>CP029188.1|AWI29315.1|2574802_2575486_-|ribulose-phosphate-3-epimerase
MAQINPSILSADFARLAEEAQAVEGADWLHVDVMDNHFVPNLTLGVPVVESLSRATDTPLDCHLMIENPDRWAPQYVEAGAGSVTFHAEAAAAPVRLAREIRAKGARAAMALKPATPIEPYEDLLPELDMLLVMTVEPGFGGQAFLDIMLPKIRRTRELINKHGLELWLQVDGGVSASTIERCAEAGADVFVAGSAVYGAEDPAQAVRTLREQADRTIASAPWACDH
>CP029188.1|AWI29316.1|2575861_2577292_-|rRNA-cytosine-C5-methyltransferase
MSQQSRRRPSQPYRPPKKDPVRILAFDALRAVDERDAYANLVLPPLLRRAREQDGFDSRDAALATELVYGTLRRQGTYDAIIAECVDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGDGRAKFVNAVLRRISRHDLDGWLELVAPPYDEDPEDHLAVVHSHPRWVVSALWDALGGGRAGIEDLLAADNERPEVTLVARPGRSTAGELLSLLGEDGGLPGRWSPYAVRLAEGGEPGALGPVREGRAGVQDEGSQLVALALAGAPLDGPDESWLDGCAGPGGKAALLGALAAERGAALVAAEKQPHRARLVERALAGNPGPYQVVTADGTRPAWRPGAFDRVLVDVPCTGLGALRRRPEARWRRRPEDLDGFAPLQRALLREALQSVRVGGVVGYATCSPHPAETRAVVDDVLGEQGGPIRAEWIDARPLMPGVPALGDGPDVQLWPHLHGTDAMYLALLRRTA
>CP029188.1|AWI29317.1|2577492_2578425_-|methionyl-tRNA-formyltransferase
MKLVFAGTPEVAVPALDALIASDRHEVVAVVTRPDAPAGRGRRLVASPVAQRAHEAGIEVLKPARPRDEDFLARLRELAPDCCPVVAYGALLPKEALDIPARGWVNLHFSLLPAWRGAAPVQHAILAGDEMTGASTFRIEEGLDSGPVYGVVTEHVRPTDTSGDLLTRLAFAGAGLLSATMDGIEDGSLEAVPQPADGVTLAPKITVEDAHVDWHTPALRIDRLVRGCTPAPGAWTLFRGERLKLINVRPLPDRAELSPGELSVGKNHVLAGTGSHAVELHWVQPQGKKPMRAADWARGVRIAPGETLGS
>CP029188.1|AWI29318.1|2579701_2580226_+|hypothetical-protein
MADHATHDAQARASLHLLVRDIERVRRQVDALRTLTAQLGNVYRPRRSGPSTGFVVYGRAPAPTVRLAQELRDSVETLVTAAVDFDRSLGFSWDAVGSALGVTKQAVHRRYGSRRAAPQPTALPAEPEPGATRTMPVAPAVPAARSMPPQPGPGGHPLRDEVRHHSAFPGPRNG
>CP029188.1|AWI29319.1|2580574_2582740_-|primosome-assembly-protein-PriA
MSSADEASERPGDGSPEQLALIRETVRKAAKPRAKPRTWRGAALAGERPVARVVVNKGVLHLDQYFDYAVPEELDEDAQPGVRVRVRFGAGSHQVREGRREGGRLIDGFIVERRADSDYSGPLAALAGVVSPEPVLSPGLLGLARAVADRYAGSLADVLQLAVPPRSARAESRPSPPPLPSPAAPEPGTWTRYEQGPAFLNALAGGGVPRAVWTALPGPQWAGELAVAVAATLASGRGALVVLPDGRAVARVDAALTELLGAGRHAVLTAEAGPEKRYGQWLSVRRGSVRAVVGTRAAMFAPVRDLGLVAIWDDGDSSHSEQHAPLPHAREVLLLRAAHEHCGFLLGGVSCTVEAAQLVETGWARPLAADRGQVRRAAPLIRTVGDGDLARDEAARAARLPTLAWQTVREGLRSGPVLVQVPRRGYVPKLACERCRAPARCGHCAGPLEAPREQDLRCGWCGRDAAGWHCAECGGARLRARIVGARRTAEELGRAFPAVPVRTSGRDHVLDSVPGRPALVVSTPGAEPVAEGGYAAALLLDGWAMLGRPDLRAGEEALRRWTGAAALVRSQTEGGTVVVVAEPTLRPVQALVRWDPAGHARRELAERAELGFPPVSRMASVTGRAEAVADFLAGVSLPGDAEVLGPVPLPPPPPGRPRRPGDPPQAPRGGRGPGEQWERALLRVPPGSGAALAAALKSAQAARLARGGEPVRIRVDPPDIG

Crispr_ID: CP029188_17

• CRISPR_ID: CP029188_17
• CRISPR_location: 2799708-2799812
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_17

Consensus_repeat	Method
GCCCCGGCCCGGGCGGGACACCCGC	CRISPRCasFinder

spacers of CP029188_17

>17.1|2799733|55|CP029188|CRISPRCasFinder
CTGCGGACCGGCCGGACGCCGGCCTGCGGACCGGCCGGACGCCCGACGTGGACCG

CRISPR arrays and Neighbor proteins around CP029188_17

CRISPR arrays

The CRISPR arrays of CP029188_17

>merge|CP029188|17|2799708-2799812|CRISPRCasFinder
GCCCCGGCCCGGGCGGGACACCCGCCTGCGGACCGGCCGGACGCCGGCCTGCGGACCGGCCGGACGCCCGACGTGGACCGGCCCCGGCCCCGGCGGGACACCCGC

>CP029188|17|17|2799708-2799812|CRISPRCasFinder
GCCCCGGCCCGGGCGGGACACCCGC	CTGCGGACCGGCCGGACGCCGGCCTGCGGACCGGCCGGACGCCCGACGTGGACCG
GCCCCGGCCCCGGCGGGACACCCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI29487.1|2799180_2799546_+|SsgA-family-sporulation/cell-division-regulator	unknown	unknown	gnl|CDD|377399
CP029188.1|AWI29484.1|2796370_2797147_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213192
CP029188.1|AWI29493.1|2807864_2809040_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|366166
CP029188.1|AWI29492.1|2806986_2807868_-|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl|CDD|235633
CP029188.1|AWI29485.1|2797143_2797905_-|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl|CDD|274139
CP029188.1|AWI29495.1|2811619_2812462_-|exodeoxyribonuclease-III	unknown	unknown	gnl|CDD|197336
CP029188.1|AWI29491.1|2806648_2806888_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI33013.1|2810770_2811388_+|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133405
CP029188.1|AWI29488.1|2799853_2802019_-|hypothetical-protein	unknown	unknown	gnl|CDD|225272
CP029188.1|AWI29489.1|2802248_2802836_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|379883
CP029188.1|AWI29494.1|2809036_2810581_-|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224983
CP029188.1|AWI29490.1|2802997_2806522_+|peptidase-S41	unknown	unknown	gnl|CDD|143478
CP029188.1|AWI29481.1|2792510_2794139_+|penicillin-binding-protein	unknown	unknown	gnl|CDD|223839
CP029188.1|AWI29479.1|2791145_2791484_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI29496.1|2812480_2812966_+|N-acetyltransferase	unknown	unknown	gnl|CDD|366181
CP029188.1|AWI29480.1|2791576_2792248_-|histone-deacetylase	unknown	unknown	unknown
CP029188.1|AWI29483.1|2795089_2796256_-|esterase	unknown	unknown	gnl|CDD|365903
CP029188.1|AWI29482.1|2794432_2794951_+|aminoacyl-tRNA-deacylase	unknown	unknown	gnl|CDD|239825
CP029188.1|AWI29478.1|2787788_2791100_+|hypothetical-protein	unknown	unknown	gnl|CDD|379232
CP029188.1|AWI29486.1|2797919_2798996_-|cobalt-ABC-transporter-permease	unknown	unknown	gnl|CDD|376649

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI29487.1|2799180_2799546_+|SsgA-family-sporulation/cell-division-regulator	gnl|CDD|377399	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA. The precise function of SsgA is unknown. It has been found to be essential for spore formation, and to stimulate cell division.	2.48834e-23
CP029188.1|AWI29484.1|2796370_2797147_-|ABC-transporter-ATP-binding-protein	gnl|CDD|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	6.34294e-94
CP029188.1|AWI29493.1|2807864_2809040_-|alpha/beta-hydrolase	gnl|CDD|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	5.38189e-21
CP029188.1|AWI29492.1|2806986_2807868_-|SDR-family-NAD(P)-dependent-oxidoreductase	gnl|CDD|235633	PRK05872, PRK05872, short chain dehydrogenase; Provisional.	7.17241e-141
CP029188.1|AWI29485.1|2797143_2797905_-|cobalt-ECF-transporter-T-component-CbiQ	gnl|CDD|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	8.84958e-42
CP029188.1|AWI29495.1|2811619_2812462_-|exodeoxyribonuclease-III	gnl|CDD|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	1.0433e-133
CP029188.1|AWI33013.1|2810770_2811388_+|MerR-family-transcriptional-regulator	gnl|CDD|133405	cd04778, HTH_MerR-like_sg2, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	5.40739e-57
CP029188.1|AWI29488.1|2799853_2802019_-|hypothetical-protein	gnl|CDD|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	2.04968e-119
CP029188.1|AWI29489.1|2802248_2802836_-|TetR-family-transcriptional-regulator	gnl|CDD|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	3.55817e-17
CP029188.1|AWI29494.1|2809036_2810581_-|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|224983	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism].	1.44502e-105
CP029188.1|AWI29490.1|2802997_2806522_+|peptidase-S41	gnl|CDD|143478	cd07562, Peptidase_S41_TRI, Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active site tetrad residues are distributed between the C1 and C2 domains, with serine and histidine on C1 and serine and glutamate on C2.	2.26619e-68
CP029188.1|AWI29481.1|2792510_2794139_+|penicillin-binding-protein	gnl|CDD|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	9.36741e-39
CP029188.1|AWI29496.1|2812480_2812966_+|N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.69822e-12
CP029188.1|AWI29483.1|2795089_2796256_-|esterase	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	8.17047e-57
CP029188.1|AWI29482.1|2794432_2794951_+|aminoacyl-tRNA-deacylase	gnl|CDD|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	1.07426e-51
CP029188.1|AWI29478.1|2787788_2791100_+|hypothetical-protein	gnl|CDD|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	2.31041e-05
CP029188.1|AWI29486.1|2797919_2798996_-|cobalt-ABC-transporter-permease	gnl|CDD|376649	pfam01891, CbiM, Cobalt uptake substrate-specific transmembrane region. This family of proteins forms part of the cobalt-transport complex in prokaryotes, CbiMNQO. CbiMNQO and NikMNQO are the most widespread groups of microbial transporters for cobalt and nickel ions and are unusual uptake systems as they consist of eg two transmembrane components (CbiM and CbiQ), a small membrane-bound component (CbiN) and an ATP-binding protein (CbiO) but no extracytoplasmic solute-binding protein. Similar components constitute the nickel transporters with some variability in the small membrane-bound component, either NikN or NikL, which are not similar to CbiN at the sequence level. CbiM is the substrate-specific component of the complex and is a seven-transmembrane protein. The CbiMNQO and NikMNQO systems form part of the coenzyme B12 biosynthesis pathway. The NikM protein is pfam10670.	1.05955e-49

Protein sequences

>CP029188.1|AWI29487.1|2799180_2799546_+|SsgA-family-sporulation/cell-division-regulator
MSHTVESPSVVEHAKARIINDAPHYRSVPVALRYEPGGDPDAVRCVFPSGTEWAFRRELLEAGLRAPARGGPVAVWPCGRAQVVVEFHSPDGVSVIQFDAHPLVRFLHRTHEEAAAPATRV
>CP029188.1|AWI29486.1|2797919_2798996_-|cobalt-ABC-transporter-permease
MHVPDGFIDLPVSAAAGVAAAGAVAVSLRGARRELSGTAHSGGHGGERTAPLAGLVAAFIFAVQMLNFPVAAGTSGHLLGGALAAILVGPYTGVLCISVVLLLQGVLFADGGLTALGVNILVMGVVTAVVAYTLFRALVRVLPRKRRSVTVATFVAALVSVPASAIAFTLLYAIGGTTDVPVGTVLGAMTGVHLLIGVGEAVITALTVGTVLAVRPDLVHGARGLSAPLKLRVDGELVDASPAAVPAPAASPRPVLFAGLVISLVLAGFVSFYASADPDGLERVAADKGFDRKVEDHGAAGSPLADYGVSGFDDARVSGGLAGVIGVGATLAVGTGVFLVVRRRRLDTTEAGKETVRA
>CP029188.1|AWI29485.1|2797143_2797905_-|cobalt-ECF-transporter-T-component-CbiQ
MSTGHAHKLYRHGHSPVHRLPPHCKIAAALGFVLVVVSTPREAVWAFGLYALLLAAVAAAARVPAGFVLRRMVIEVPFVAFALLMPFLVPGERTEWLGVSLSVPGLWGAWNILAKGTLGVATSVLLASTTELRSLLLGLQRLRLPPLMVQIASFMVRYGDVIADEMRRMAIARRSRGFEARGVRHWGVLAKSAGALFIRSYERGERVHLAMLSRGYTGTMPVIDEVAASRAQWAYAAALPCSALAVCLLGWTL
>CP029188.1|AWI29484.1|2796370_2797147_-|ABC-transporter-ATP-binding-protein
MTSPPPAAAVPPSLDVRGLAYAYPDGHQALFGVDLTVGRGERVALLGPNGAGKTTLVLHLNGILTGGAGSVAVAGLPVGRQHMAEVRRKVGIVFQDPDDQLFMPTVREDVAFGPAAAGLRGEDLERRVRTALDRVGMAEYRDRPPHHLSFGQRRRVAVATVLAMEPEILVLDEPSSNLDPASRRELADILRSLDVTVLMVTHDLPYALELCPRSVILSEGVIAADGRTQDLLADPGLMRAHRLELPFGFDPRAVTTGA
>CP029188.1|AWI29483.1|2795089_2796256_-|esterase
MDVDVRGTVAEGFEPVRDAFARNFEARGEHGAAVAVYRDGVKVVDLWGGTRDVDGTEPWAVDTAQVVRSATKGVAAAVPLLLHQRGQLDLDAPVGTYWPEFKAAGKERALVRHLLSHRAGVPALDRPLTPAEAADGTTGARAVAAQAPAWEPGTDHGYHAHTYGWLLAELVRRVTGRTIGRWTAEEMARPLGLDFWIGAPGDEAHRIGRIGRIGEPPTASGGGLKLRPKRSVAEAYRDPDSLTRRAFGAIDPLPDENDPGYRSAELPASGGVSTARALARFYAATIGPVDGHRLFAPATLTLARTEESTGPDRVLVVGTRFGLGYMLHGPASPLLGPGSFGHPGRGGSLAFADPESGVAFGYVTNGMRKGVTADPRAQALVRAVRSAI
>CP029188.1|AWI29482.1|2794432_2794951_+|aminoacyl-tRNA-deacylase
MNTAGSPAHPRFAEALRTLGLDVEVRRFPDATRTAAQAADAIGCDVAEIVKSLVFVAQGVQGAEDPQEGEPVLVLMDGSSRVDVELVRRELGATAVRRADADLVRETTGYAIGGVPPFGHRTATRVLADRGLLDHAVMWAAAGTPHTVFPLDPASVIAHAGAKLVDVRERPA
>CP029188.1|AWI29481.1|2792510_2794139_+|penicillin-binding-protein
MRSGAKIAVVGGVFVLFAGGVGYGAHSALGGGDDGGTESKSGAVTKRSGPPSAEEIRTTAKDFLAAWASGQAPRAAQLTNDAAEAEPLLSSFRDGAHVSGVTMKQGKPVGPKVPFTVSATVSYEGASKPWTYASELTVVRGLTTGRPLVDWAPSVVHPQLGEGARLKTGPTAAPPIKAVDRRGRELTKEKYPSLGPVLDQLRQRYGDKAGGKPGVELVISPADGADGADSTVLTLAEGEPGEVVTTLDADVQAAAEQAVKRHSEASVVAIRPSTGEIRAVANNRADGFNAALGGQQAPGSTMKIVTAALLLDKGLVAADRKVECPKNVMYQGQTFHNLDHFDIPDGTFTQSFARSCNTAFIKQIRKVGDDAALSRLARDTFGIGLEWSTGVPTFDGSVPEGAGGEAAAQYIGQGTIQMNALTVASIAATAKNGGFRQPVVVPRSLDGRELATANRRLSGSVWGQLRDMMRATAQWGSGAEAMAGVPGDKGAKTGSAEVDGQATSNSWFAGFAGDLAAAAVVQAGGHGGDAAGPLVASVLKSG
>CP029188.1|AWI29480.1|2791576_2792248_-|histone-deacetylase
MKRARTIDTTTAPFADHSPAMVWYTAYGSNTHLERLSHYLTGGRPRGAARTYPGCRDPRPPAASVPVEVPGALYFATRSPVWRGGRAFFDPAAAGTVLARAHLVTAAQFSDIVAQEMYRAPGADLDLSEALARGRAQLGGGRYETLVCPGALDGRPVLTFTAPWSLHDVEWTRPSAAYLRHLVAGLLDAGAWPASEIAAYLAARPGAAGHWTADAVAALTAGR
>CP029188.1|AWI29479.1|2791145_2791484_+|hypothetical-protein
MPTLTDLARNRTVLAASASAAVAALAVTLAVLLLGGGPDRPDAVKCRDEATAEIEAAVADGTEIAPGLPPHCQGLPRKERDKIITDSADAVIGDEMDRARKEMERVAGTTGH
>CP029188.1|AWI29478.1|2787788_2791100_+|hypothetical-protein
MAALLSAALVAGLLAWAPWNSGTPRAAKPAPEGEAGPVTAAQAAREARATERDVLVETETTESSRTFALPDGTWRTETHAVPVRAQRPDGTWAPIDARLRPTGDGTRLRPVNVPGAVEFAAGASRTAGGGKASRSASNAVDRAGTAATAVWRPTGGRSQVQPAARPGSQPAADPAVPETFLASTSYEGHTVTYTWPGELPEPAVDGNRALYREVLPGVDLLLVAREVGGFGQLLIVKDEEAARQKALRTVSYGLRSDTAAFSLDAETGGVAITDKDSDEVVGAIPTPFAWDSAGLESPEDPAAKPYTDTTTARNTFALTGLTGPEPGSATAILPATLDGGGTGSATLTLDAAATGLLTGDLVDRGEVRFPVFLDPTVERTEKGWTMAYKPYPNSNFYNGTNFSGGTDEARVGYESNTGGLSRSYWKMNFGGGIAGSTVISATWKIKNVHSWSCEARQIELWLTGSISTSTTWNNQPGKKRQLGAKSFAHGYNSSCPDAYVGYDVKSGAQEAANGSWDYLTLGLEASTETSSYSWRKFDAGSAVLTVHYNRPPQQPVNGDISNGSCNTVIGEEVIGLTDVVMSATATDLDSNLKGLRFRLWENGASTKILDKVVTGSGGSKTQTASVTVPESQLADGKTYSWDIRAEDTEGAVSTYFPDGSDPCRFTVDDTAPAAPTLTSTDFPEANSEGSNWAVEAPHGTSGTVVLDSSASATRYAIGFNSIDYTHIYLDDPAGGQTFRIDRSPVTGHLIETVTRAAKGAPVTITLKAPTAGPTYIHAYAYDAVGNRSVRSQIRTFIPSGRTDDGPGDVTGDTQPDLVVIRGDGSLYTYPGEKGGEVYGGLIASYDGTGRQTPPGHWYDAGATATTKKHALISKWGDLHPGDGLTDILARTPDGKLWIYPGDGYGSTNTDERVRVLLPDNAPAPATWDEMRTTGDVNGDGEADLMVITDAGQLWFLSGYTAGAFAEAVKLLADGTWAGRDLINVADVDLDGTADMLWRNPSNGNMYIRHGKPAAGGKGLDPVSLSTAAKSREGVDTPYGTSWTATNIDQIIAIPDTSGDGIPDLWAREASTGNIRVYHPSKTNTNPPVKTVMTADWSSYLALT
>CP029188.1|AWI29488.1|2799853_2802019_-|hypothetical-protein
MATFLYKLGRFAFRRRRLVALLWVGLFALAGVAASSAPTAASSSFSIPGTEAQKAFDLLDERFPGTSADGATARVVFKAPDGEKMTDPAHRAEVGKAVAELRSGSDQVASVVDPYQAKAVSRDGTIAYTQVSYKVSGMELTDKDREALTEAGEQAREAGLTVEIGGDALLAAPETGASEVIGVGVAAVVLVITFGSLVAAGLPLLTAIIGVGIGVSTITALASTLDLGSTTATLATMIGLAVGIDYALFIVSRYRAELAEGRDHEEAAGRATGTAGSAVVFAGLTVVIALVGLAVVNIPMLSKMGFAAAGTVAIAVLIALTLIPALLGFAGKRVLGRKARKQTAPADDKPNMGTRWARFVLRRPVAVLLAGVVGLGAVAVPAASLEMGLPDDGSQPTSTTQRKAYDLLSEGFGPGFNGPLLVVVDGDKAAADGAAKDIAGLDGVAAVTPATYNKAGDTAMITVIPEDRPSSTETEDLVRTIRDTTGDEVHVTGATAMNIDFSQRMNDALAPYLALVVGLAFLLLMVVFRSVLVPLKAALGFLLSVVAALGAVVAVFQWGWLGSLFGVEQTGPIMSMMPIFMVGVVFGLAMDYEVFLVTRMREAFVHGERPGQAIVTGFRHGARVVTAAAVIMIAVFAGFIGSGEQMVKMIGFGLAIAVFFDAFVVRMAIVPAVLALLGGKAWWLPRWLDRVLPSVDVEGEKLGDAGAPAGDGGKERELVGT
>CP029188.1|AWI29489.1|2802248_2802836_-|TetR-family-transcriptional-regulator
MARSRLTPERAAELYEAVLDLLREVGYDALTMDAVAARTRSSKATLYRQWGSKPELVAMSLRNSKPVDISRIDTGSLRGDFHEMVSQADDGQMERDNALMCGLARAVHENEDLLQALRELFIEPEITGLDVLLQRAVARGEISADNPALKYLSHMLVGAFVAHPLISDEPMGQSVLHEYLDAVVLPALGVPAGGD
>CP029188.1|AWI29490.1|2802997_2806522_+|peptidase-S41
MSDDVAYLRFPHLHADLLCFAAEDDLWIAPLVPAGESPGRAWRVTVDRTRVGHPRFSPDGSLIAYTTWRSLDPEVHLAPVGGGPARRLSYWGSTDTRVCGWDPDGNILAVSSHGQPFSYFSWAYKLPTDGDPGKRLPWGPVSDISVADAGGQHRTLLLTGKPPHEPAGWKRYRGGAMGRLYLHGERLLADIGGHLDCPMFVGGRIAFLSDHEGVGNLYSCLPDGTDLRRHTDHDAFYARHASSDGSRIVYQCAGDLWIVEDLAPGSQPRKLDVWLGGPRAGRRRHQVPAASNVAGLSVDTTGRASAVVVRGSLYWLTHRDGPARTIADTPGVRVRLPVMLGSGGGQVAYVTDADGEDAVEIAYLPRASGHRPPRRLASGRLGRVLEMVSDPAGERLAIASHDGRLLLITVAEEEGAEAVRGAGTGGEASGAGASGTETSGTEASGAGPSGTGASGTEASGAGPSATDASGTDASATDASGAASGAASGGADSGSADGSAGSGEGVVTELIRSVNGPVRDLAFSPRGNWLAWSHPFIGRSLRQIKMARIDGPGPRTVVDVTNGRFEDESPVFTRDGRYLAFLSWRGFDPVYDVHTGDLSFPLGCRPYLVPLSSATPSPFALLPDGRPAAGGLDPAEADIGEGAAMVEVEGLESRVTPFPVAASKYSSLHPVAGGGLVWLRWPISGALGETFANPADPSHRPTLEYFDIPKARRTELVAHLDWFAVSGDGSRLVVFDDGELRAVPATESGDSDSTVYLDMRRILHEVDPPAEWRGAYQEAGRLIRDYYWDPGMCGIDWDAVLDQYRPLLERVASPDEFADLLREVLGELGTSHAYVTPARRNEGPPHYQRAMGLLGTNLARREEGWTVVRILPGDSSDSKARSPLAGTGIREGAVLTHVDGRPVDPVTGPYPLLAAAGGTTVELTFRPAEGEGPPRRVAIVPLIDERPLRYQDWVAKRRAVVREMSGGECGYLHIPDLGGSGWAQFNRDLRMEVSRPSLIVDVRGNAGGHISELVMEQLTRKILGWDLTRNAQPVSYTSNAPRGPIVALADEATSSDGDMITAAFKLLGVGPVVGQRTWGGVVGMTGRHRLVDGTVITVPMNAAWFDAYGWSVENHGVEPDIFAERPPLHWAEGKRTDLDTAVQVALDRLAKDPAKTPPGYDDVPDRRRPPLPPRH
>CP029188.1|AWI29491.1|2806648_2806888_-|hypothetical-protein
MGIQDQFKDKADQLKEQGKQKPGMKQEASQRSPQQRPQQRPPQERGRERGQEHGQEHGQERRRPEREMGDDPMHRRHDA
>CP029188.1|AWI29492.1|2806986_2807868_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTRGSLEGQVAVVTGAARGVGELLARKLSARGAKVALVGLEPDELKAVAGRLHGECDHWHADVTDHVAMTRVAREVKERFGKVDIVVANAGVASGGPFADSDPEAWRRVIEVNLIGSAVTCRAFLPVLVESRGYFLQIASLAAITAAPMMTAYCASKSGVEAFAHSLRAEVGHKGVKVGVGYLSWTDTDMVRGADLHDVMRELRQRLPWPSNRTYPLGPAVDRLVAGIERRSAHVYAQWWLRGMQSVRGGLPSLIGLVGRREMRRFEPRLGGMRTGLVGAGGAADERERTERN
>CP029188.1|AWI29493.1|2807864_2809040_-|alpha/beta-hydrolase
MSRLMQRFATAPAPPVAARELTAVSADGSRLHVEVHGPDGAPAVVLAHGWTCSTRFWAAQIRELAADHRVIAYDQRGHGRTPAVGEAGAGAGAVAGYGYGYGTEALADDLEAVLAAALAPGERAVLAGHSMGGMTLMAAASRPGFAEHAAAALLCSTGSSRLVAESLVVPMRAGAFRTRLTRAILGSRAPLGPVTPVSRRILRYATMGPGTAPERVAECARIVHACPRRTRVAWAHVLAGLDLDSGVREMRLPTAVVAGTADRLTPIVHARALAASLPECTGLVELAGTGHMTPVEAPEAVTAEIRKLVDAYLGREAAAGQGSRTAREAAAQQDSGTAWEAAAQQDSGTARGAAARPDSRTAREIPAAREPRTVREAAARPGTPTTQEEKA
>CP029188.1|AWI29494.1|2809036_2810581_-|NAD(P)/FAD-dependent-oxidoreductase
MSQRYEHVRVAVIGSGFGGLGAAVRLRREGITDFVVLERAESVGGTWRDNSYPGCACDVPSHLYSFSFAPNPDWPRTFSGQEHIRAYLEHVTDTFGIRPHLRFGHDVLMMRWNTGELHWEIETSRGAFTADVVVSATGPLSDPKVPEIPGLDGFPGRVFHSARWDHDYDLRGKRVAMIGTGASAIQIVPAIQPLVAKLTLFQRTPPWVLPRMDRAIGAGERRLHRLLPLTSTVRRGLLWGIRELQVSAFTKRPNQLGLIESMAKANMAKSVKDPALRAKLTPSYRIGCKRILLSSDYYPALARPNVDVVASGLTEVRGSTVVAAGGAEAEVDAIVFGTGFHVTDLPIADRVVGADGHTLAEAWKDGMESLRGATAAGFPNWMTIIGPNTGLGNSSMILMIESQLNYLADYLRQLDVLGGRVALGARPSAVHAWNRRVQERMKRTVWNTGCSSWYLDASGRNTTLWPGTTGEFRRQTRTVDLAEYEVIRAPRTAAADRAAGSTGAVPAAVGEEGA
>CP029188.1|AWI33013.1|2810770_2811388_+|MerR-family-transcriptional-regulator
MEELAEQAGITVRTLRFYRERGLIPPPRREGRIAWYDDHHLARLRTIAALLERGHTLSGIADLASAFDSGRDVGEVLGLGEPTEETPARLTPEDLADYFEGDATAENLTAALDLGYLATDGDEIVHISRRLLDVSSALVKEGVPLSAVLAAGREVRGHAEALASLFVELLRSHAAEGDLERLRPLAKSVVDAELSMAMDRRLRGS
>CP029188.1|AWI29495.1|2811619_2812462_-|exodeoxyribonuclease-III
MHGRPSGYCSGVLTVTSVNVNGLRAAARKGFVEWLAGTSADVVCLQEVRAEAHQLPDEVRSPDGWHAVHVPAAAKGRAGVSVLTRREPDAVRTGFGSEEFDGAGRYVEVDLPAVTVASLYLPSGDVGTERQDEKYRFMDAFLPYLRDLRERAAADGRDVLVCGDWNIAHQEADLRNWRGNRKNSGFLPEEREWLGRVYGDGETGAGYVDVVRAMHPGQEGPYSWWSYRGRAFDNDTGWRIDLLVATPRLAERCVKAYVERAASHAERWSDHAPVTAVFES
>CP029188.1|AWI29496.1|2812480_2812966_+|N-acetyltransferase
MNIQPMRFDHPDAVKLNDQVQLEYAARYGDEGDVTPLDPSMFVPPRGLYLLAYDGLGRPVATGGWRTQDENAEGYANGDAELKRMYVVPEARGLGLARRVLAALEEDARAAGRTRMVLETGTAQPEAIALYTSSGYEPCAKFGHYRHYETSRCFAKPLTRR

Crispr_ID: CP029188_19

• CRISPR_ID: CP029188_19
• CRISPR_location: 3720427-3720519
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_19

Consensus_repeat	Method
CGCCCCTCGCTCCGGCACCCGCC	CRISPRCasFinder

spacers of CP029188_19

>19.1|3720450|47|CP029188|CRISPRCasFinder
TCGGCACCTCGGGGAGGTCGTGACTCCGCCTGCTCGGCACCACGTCC

CRISPR arrays and Neighbor proteins around CP029188_19

CRISPR arrays

The CRISPR arrays of CP029188_19

>merge|CP029188|19|3720427-3720519|CRISPRCasFinder
CGCCCCTCGCTCCGGCACCCGCCTCGGCACCTCGGGGAGGTCGTGACTCCGCCTGCTCGGCACCACGTCCGGCCCCTCGCTCCGGCACCCGCC

>CP029188|19|19|3720427-3720519|CRISPRCasFinder
CGCCCCTCGCTCCGGCACCCGCC	TCGGCACCTCGGGGAGGTCGTGACTCCGCCTGCTCGGCACCACGTCC
GGCCCCTCGCTCCGGCACCCGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI30188.1|3727715_3728921_+|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl|CDD|236134
CP029188.1|AWI33075.1|3718386_3719904_+|transferase	unknown	unknown	gnl|CDD|225443
CP029188.1|AWI30186.1|3721144_3724066_+|type-I-DNA-topoisomerase	unknown	unknown	gnl|CDD|236048
CP029188.1|AWI30191.1|3732106_3733030_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30183.1|3714674_3717071_+|sodium-translocating-pyrophosphatase	unknown	unknown	gnl|CDD|234827
CP029188.1|AWI30179.1|3709751_3710162_+|pilus-assembly-protein-TadE	unknown	unknown	gnl|CDD|377921
CP029188.1|AWI30190.1|3731244_3731721_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30177.1|3708563_3709355_+|type-II-secretion-protein-F	unknown	unknown	gnl|CDD|224975
CP029188.1|AWI30180.1|3710158_3710824_+|hypothetical-protein	unknown	unknown	gnl|CDD|274799
CP029188.1|AWI30192.1|3733146_3733605_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30193.1|3733776_3734097_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30182.1|3713952_3714402_+|anti-sigma-regulatory-factor	unknown	unknown	gnl|CDD|379279
CP029188.1|AWI30184.1|3717301_3717970_+|small-secreted-protein	unknown	unknown	unknown
CP029188.1|AWI33074.1|3710919_3713196_-|DUF1998-domain-containing-protein	unknown	unknown	gnl|CDD|274800
CP029188.1|AWI30178.1|3709486_3709765_+|DUF4244-domain-containing-protein	unknown	unknown	gnl|CDD|379429
CP029188.1|AWI30181.1|3713463_3713817_+|anti-sigma-factor-antagonist	unknown	unknown	gnl|CDD|132914
CP029188.1|AWI30187.1|3724220_3727352_+|dTMP-kinase	unknown	unknown	gnl|CDD|234814
CP029188.1|AWI30185.1|3720710_3720908_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30189.1|3729158_3730721_+|proteinase	unknown	unknown	gnl|CDD|312032
CP029188.1|AWI30194.1|3734132_3736835_+|hypothetical-protein	unknown	unknown	gnl|CDD|223510

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI30188.1|3727715_3728921_+|DNA-polymerase-III-subunit-delta'	gnl|CDD|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	0
CP029188.1|AWI33075.1|3718386_3719904_+|transferase	gnl|CDD|225443	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis].	1.21216e-17
CP029188.1|AWI30186.1|3721144_3724066_+|type-I-DNA-topoisomerase	gnl|CDD|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
CP029188.1|AWI30183.1|3714674_3717071_+|sodium-translocating-pyrophosphatase	gnl|CDD|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0
CP029188.1|AWI30179.1|3709751_3710162_+|pilus-assembly-protein-TadE	gnl|CDD|377921	pfam07811, TadE, TadE-like protein. The members of this family are similar to a region of the protein product of the bacterial tadE locus. In various bacterial species, the tad locus is closely linked to flp-like genes, which encode proteins required for the production of pili involved in adherence to surfaces. It is thought that the tad loci encode proteins that act to assemble or export an Flp pilus in various bacteria. All tad loci but TadA have putative transmembrane regions, and in fact the region in question is this family has a high proportion of hydrophobic amino acid residues.	0.00025204
CP029188.1|AWI30177.1|3708563_3709355_+|type-II-secretion-protein-F	gnl|CDD|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	7.19097e-10
CP029188.1|AWI30180.1|3710158_3710824_+|hypothetical-protein	gnl|CDD|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	1.23992e-20
CP029188.1|AWI30194.1|3734132_3736835_+|hypothetical-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	9.68003e-13
CP029188.1|AWI30182.1|3713952_3714402_+|anti-sigma-regulatory-factor	gnl|CDD|379279	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain.	2.09419e-29
CP029188.1|AWI33074.1|3710919_3713196_-|DUF1998-domain-containing-protein	gnl|CDD|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	0
CP029188.1|AWI30178.1|3709486_3709765_+|DUF4244-domain-containing-protein	gnl|CDD|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	1.88248e-18
CP029188.1|AWI30181.1|3713463_3713817_+|anti-sigma-factor-antagonist	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	4.53055e-33
CP029188.1|AWI30187.1|3724220_3727352_+|dTMP-kinase	gnl|CDD|234814	PRK00698, tmk, thymidylate kinase; Validated.	2.78459e-80
CP029188.1|AWI30189.1|3729158_3730721_+|proteinase	gnl|CDD|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	1.08996e-35

Protein sequences

>CP029188.1|AWI33075.1|3718386_3719904_+|transferase
MSTTSLAAGLPVPDQSARLRDALIAADFTADGLLELLGAPAYSALARSETVPALRATRGGSPLETLVRLFLLQRPVAAERAREALPLDVALADGWVAESPDGIRATVDVRPYGGPEGQDWYIVSDLGCAVGGAGGATGRAEGVVLGVGGASTTLAGITVRVPVSSALDLGTGSGIQALHATGHATRVTATDLNPRALAFTRLTLALSGAPEADLREGSLYTPVGSDTYDLIVSNPPFVISPDARLTYRDGGMGGDDLCRSLVQQAGDRLNEGGFAQFLANWQHVAGEDWQQRVRSWVPRGCDAWIVQREVQDVTQYAELWLRDSGDHRAAPEEYAARYDAWLDEFEARGTKAVGFGWIVLRKTASDRPSIVVEEWPHPVEQPLGEAVRAHFARQDYLRAHDDAALLADHFVLVDDVVQEQVGLPGAEDPEHVVLRQSRGMRRATKVDTVGAGFAGVCDGTLSAGRILDAIAQLVGEDPVLLRDRTPEAIRLLVGEGFLEPAGPRD
>CP029188.1|AWI30184.1|3717301_3717970_+|small-secreted-protein
MKVNRKFSAAVSGGALLVLALTGCGDGDDSAKVDAWAKSVCEKAQPQIQKRADARQAIISTSVDGKPADIQAADSKAFKDIADANRALASAVQAAGTPPGEGQEQLQQDAIKELNATATAYLDLKKKVDELDPKDQQEFADGLKDVAKGLKKIQKTDQVALGKLQSGDLGKAMGKQKGCQRARPSVTPPPAAGDGPSEPSGKPSNAAGPSKSAGSAEPEASE
>CP029188.1|AWI30183.1|3714674_3717071_+|sodium-translocating-pyrophosphatase
MAGLFNPTLTDPTSLAAAVLTDDNRMIVMVIAAVAIAALVVAQLLVRQVLAAGEGTESMKKIAAAVQEGANAYLARQLRTLGIFAVVVFFLLMLLPADDWSQRLGRSVFFLVGALFSAATGYIGMRLAVRANVRVAAAAREATPAEGEPAKDLTTVAHKAMKIAFRTGGVVGMFTVGLGLLGAACVVLVYAADAPKVLEGFGLGAALIAMFMRVGGGIFTKAADVGADLVGKVEQGIPEDDPRNAATIADNVGDNVGDCAGMAADLFESYAVTLVAALILGKAAFGDLGLAFPLIVPAIGVVTAMIGIFAVAPRRADRSGMSAINRGFFISAVISLALVAAAVFAYLPSSYAALSGVTEPAIRAHEGDPRILALVAVAIGIVLAALIQQLTGYFTETNRRPVRDIGKSSLTGPATVVLAGISIGLESAVYTALLIGLGVYGAFLLGGTSIMLALFAVALAGTGLLTTVGVIVAMDTFGPVSDNAQGIAEMSGDVEGAGAQVLTDLDAVGNTTKAITKGIAIATAVLAAAALFGSYRDAIATAVAEVSAKAGEMNLSLDISQPNNLVGLVLGAAVVFLFSGLAINAVSRSAGAVVFEVRRQFREHPGIMDYSEKPEYGRVVDICTKDALRELATPGLLAVMAPIAVGFTLGVGALGSYLAGAIGTGTLMAVFLANSGGAWDNAKKLVEDGHHGGKGSEAHSATVIGDTVGDPFKDTAGPAINPLLKVMNLVALLIAPAVVQFSYGDDANAGVRAAIATLAILVIVVAVYLSKRRSVAVGDESNAADRSSKSPDPAVVSQ
>CP029188.1|AWI30182.1|3713952_3714402_+|anti-sigma-regulatory-factor
MATVELRFSAQPEHVRTARLVAAAVARRAGVDEAVLDEVRLAVGEACSRAVGLHRSHGVTAPVRVLLTEEEKSFSIEVGDEVPASGGSPGSDAGQHGAGPGDDPEDADGRDQMGLAVISGLVDDVEVTTSGRGGLIRMSWPSNPATIVP
>CP029188.1|AWI30181.1|3713463_3713817_+|anti-sigma-factor-antagonist
MDLSLSTRNVSGPGGDRTVVEVGGEIDVYTAPKLREQLVELVNDGSYHLVVDMEGVDFLDSTGLGVLVGGLKRVRAHEGSLRLVCNQERILKIFRITGLTKVFPIHTTVDEAVAATD
>CP029188.1|AWI33074.1|3710919_3713196_-|DUF1998-domain-containing-protein
MTHTEHLPPRPGRHAVWPHRVRPEVINAIERAGIEHPWAHQAAAAEHALDGESVVIATGTASGKSLAYLAPVLSTLLDGSEAPNGRGTTALYLAPTKALAADQCRAVRELASPLGNRVRPAVYDGDTPVEEREWVRQYANHVLTNPDMLHRGILPSHSRWSSFLRSLRYVVIDECHTYRGVFGSHVAQVLRRLRRVCARYGAHPVFLLASATAADPAVAAGRLTGLPVTEVSDDASPRGELVFALWEPPLTELHGEKGAPVRRTATAETADLLTDLAVQGVRTVAFVRSRRSAELISVISQERLAEVDRNLARRVAAYRGGYLPEERRALERALHSGELLGLAATTALELGVDVSGLDAVLIAGYPGTRASLWQQAGRAGRAGQGALAVLVARDDPLDTYLVHHPEALFRQPVESTVLDPDNPYVLAPHLCAAAAELPLTEQDLELFGPTTPELLPQLESAGLLRRRTAGWYWTRRERAADLADIRGEGGRPVQIVEAATGRLLGTVDEPAAHTAVHDGAVHLHQGRTYLVKRLDLEDSVALVEEADPPYSTIARDTTSVSVLETDTEVAWGAGRLCYGSVEVTNQVVSFLRRKLITGEVLGETKLDLPPRTLRTRAVWWTVTEDQLDAARVNPEQLGGALHAAEHASIGLLPLFATCDRWDIGGVSVPLHPDTLLPTVFVYDGHPGGAGFAERAFHTARDWLDATREAIASCECDAGCPSCIQSPKCGNGNDPLHKRAAVRLLTVLLSEAPAAPRPG
>CP029188.1|AWI30180.1|3710158_3710824_+|hypothetical-protein
MRRSDRGSATVWAAMAACTMCVVFAVVLAMGQAVVARHRAGAAADLAALAAADRALEGAGQACARAARVARAQGAVVVRCAVAGEIADVTAAAALGPYRPEVRSRAGPPVPPGSPVGPRPLFRLGPMLSQAPQAPQAPQVPQAPRVPPGHQDLLGPPGHPGPLGAPGRSPKRSRAERRPARPSGPVRAAGPVRRGRGPPSPLDGFRSLWRPAPPGLAAIGP
>CP029188.1|AWI30179.1|3709751_3710162_+|pilus-assembly-protein-TadE
MRSSDIGSDTTATAQPGSRCGADRGSVTAEAAVAVPALVVFTMALVWALMAASAQIQCVDAARAGARAAARSEPEAAALSAARSAAPPGAKILLGRDGDLWRVRVEAPSPGPVTPSLTLTAEAVALAEDAVGSGET
>CP029188.1|AWI30178.1|3709486_3709765_+|DUF4244-domain-containing-protein
MSMNDLRVRTTRCTARRLIDAVCTGVVARTRAILTRTRGRQNHGDAGMTTSEYAMGTIAACAFAAVLYQVITSETVSGALESIIGKALSAQF
>CP029188.1|AWI30177.1|3708563_3709355_+|type-II-secretion-protein-F
MSVEFIRGLGIALLAGAPAAWVVRARMRRRRALRRLHALLGPSAVRHGTPSRRRLVRAPVRVGPWAPTVVAVTTGWVLAGGVTGCLLGLAAAYGLHRWRRGRARDRVAGASAGEVSGQLPLAAELLAACASAGAGPREAACAVGQSLGGPVGERLQQTAAELRLGSEPARAWGRFGEIPGAAGLARCLEQAAASGAPAAEPVARLAAGLRAERTRIAVSRAQRAHVLITAPVGLCFLPAFLAVGVAPVVIGLATGLLHGSGGN
>CP029188.1|AWI30185.1|3720710_3720908_+|hypothetical-protein
MESGPAIFAGTAFTLFGAALLIWTGARVRHRAPVAHGVNPATAATLTTIFGTAFLLAGVWCLSRV
>CP029188.1|AWI30186.1|3721144_3724066_+|type-I-DNA-topoisomerase
MSPTSETAQGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPEKYTGEVRRLGVDVEHDFQPIYVVNADKKAQVRKLKEQLAGSDELYLATDEDREGEAIAWHLLEVLKPKVPVKRMVFHEITKAAIQEAVANPRELNKRMVDAQETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFSAGRAGWGAAPEAGGASDPAAFTARLASVDGRRVAQGRDFGPDGRLKSDQVLHLDEANARALKAALENAAFSVRSVESKPYRRSPYAPFRTTTLQQEASRKLGFGAKATMQIAQKLYENGFITYMRTDSTTLSDTAVAAARAQVTQLYGGDYLPEKPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWKRTVASQMKDAVGNSVTVRIGGTGSDGRDAEFSASGKTITFHGFMKAYVEGADDPNAELDDRERRLPQVAEGDPLTAEEITADGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKKGTALVPSFLSFAVVNLLEKHFGRLVDYDFTARMEDDLDRIARGEAQAVPWLRRFYFGETVPGGGFAAGAEGGAAEAGNGDGDHLGGLKELVTDLGAIDAREISSFPVGSGIVLRVGRYGPYVERGEKDAEGHQRADVPADLAPDELTVELAEELLAKPSGDFELGKDPETGHEIVAKDGRYGPYVTEILPEGTPRTGKNAVKPRTASLFKSMALDTVTLEDALRLMSLPRVVGTDAEGVEITAQNGRYGPYLKKGTDSRSLETEDQIFGITLDEALAIYAQPKQRGRAAAKPPLKELGTDPVSERPVVVKDGRFGPYVTDGETNATLRTGDSVETITPERGYELLAEKRAKGPVKKAAKKAPAKKAAAKKTAAKKTAAKKTTAAKTATRKTAAKKTTAAKTTAAKTAAKKATADRTAANTASSDA
>CP029188.1|AWI30187.1|3724220_3727352_+|dTMP-kinase
MTRAEQPTAQSPTSEPEARAADALAADSRERAVRSLLRVPALRRLWSAHVAGGTGDALALLVLVLLALQTAVAEGAFGGGYRGAAFAVAAVFGVRLLATFLFGAVLLGPLTALTAPSGPLDRRWTMIGADGLRIALLVIAPLWIGWTPGSAVAYVLATVFVTGVAERFWTVARESAAPALLPPPPPEGAAVRPLPDHQDALRRLSLRTSFAVVPIAAAALLVATLIGNLLGTGVEWFSANQAALGSYVAAGLFAASLSVLAAVELPDAPTPRPRSPLEGLRRPSTGGGLDKGRTGAVPLLVVACAAIAEAIASAAAVSALHARDLGGGPVAFALLVLALTGGTALGVRGAPNVLPALSRRRLLALVIAVTGVALLAMGLVPDTATVLFLAVLAGGAAGVAAHTGHALIDLETEEFRRPRVTEHLQAVVRVAIGLAAVGAPLLAAAIGPHRLASGDFVFAHGGAAFTLMLVGALLLPVAVIVLARTDDRSGVPLRRDLADAVRRGADPAQAPAATGFFIAVEGGDGAGKSTQVEALAEWIRAKGHEVVVTREPGATPVGKRLRSILLDVSSAGLSHRAEALLYAADRAEHVDTVVRPALERGAVVISDRYIDSSVAYQGAGRDLSPTEIARISRWATDGLVPHLTVLLDVSPETARERFTEAPDRLESEPAEFHGRVRAGFLTLAAADPGRYLVVDAGQEPEAVTTVVRHRLDRMLPLSEAEVRAREEARRAAEEEARRKAEEEAALKAEEERLERERQAQLARLRAEEEERKRRELEEARRREAERQAEEARQRAEEARRLAEEERRRREAEEKTVREEAERRRRQAEEEARLRAEAEERRREKQRKAEEALLRAEEARRAAEAAAAAAESSAAETTVPTPAVGADDATRTVETPRPRVDMTKEDAETAVLPQVPQPPDGGARGARGAGPGSAPASAGQVDETAVLPPVRGDRPGAAGAEETAVLPPVRGESPADRVPPYLFRDERSAREEEQRTRELPRVDEEGRPRRRSDWAEETPLDDLPTLADELLGPRDDEDDGRRGR
>CP029188.1|AWI30188.1|3727715_3728921_+|DNA-polymerase-III-subunit-delta'
MAVWDDLVGQERVQEQLAAAARDADALVTAEAAGEQATAASKMTHAWLFTGPPGSGRSTAARAFAAALQCTGPDRALGGAPGCGFCDGCHTSLVGTHADVEVVRTDMLSIGVKETRDLVRRAQLSPAVGRWQVIVLEDADRLTEGAGNVLLKAVEEPAPRTVWLLCAPSLEDVLPTIRSRCRHLSLRTPSVEAVADVLMRRDGIEPEAAASAARATQGHIGRARRLATDEAARARRATVLKLPLRVEDVGGCLRAAQELIDAAAEDARQVAEEIDAKETEDLRTALGAAAGGRLPRGTAGAMKELEDRQKRRRTRTQRDSLDLALTDLTGFYRDVLALQLGSRVPLANEDVREALDRVARGSSPEGTLRRMEAVLACREALDTNVAPLLAVEAMAVALRTG
>CP029188.1|AWI30189.1|3729158_3730721_+|proteinase
MTTRQFLRTSAIASAAALGLLVSGCSGGSPASEGSEPSGSVPGAAAPSPVSTAALKPYYNQKLDWRNCGAPGFQCATLKAPLDYSKPDGPSVKLAVARVKATGPGKRIGSLQVNPGGPGGSAVGYLQAYAGVGYPAPVRARYDMVAIDPRGVARSEPVTCLDGKEMDAYTQSDQTPDDPAEIDKLSTAFKGFAAGCKERSSTVLPHVSTVEAARDMDVFRSALGDEKLSYVGASYGTFLGATYAELFPERVGRLVLDGAMDPSLPARQMNRDQTEGFETAFTSFAADCTQRPDCPLGTKSTADAAARMKAFFAKLDARPVPTGESRELTESLATTGVIAAMYDEGAWPQLRDGLTEAMNGDGAGLLALSDSYYERESDGSYSNLMSAYSAVSCLDLPPAFASPDEVTASAADFEKASPVFGRNFAWASLSCAYWPTPATGSPHRIKAEGAAPILVVGTTRDPATPYKWAEALARQLDSGTLLTYDGDGHTAYGRGSDCVDTAINKYLLTGTPPADGTRCR
>CP029188.1|AWI30190.1|3731244_3731721_-|hypothetical-protein
MAVDKDAAFTLPRGATGFFRPKDGPLPETDRRRFRAALYAAARAADGRVGELEEQAYPRTFHTATVVEGTHESVVLCHAHHPWIAFARERRDWYTEEFLAPPPWAHAFADLGFAVLGRAQLTLPLPDVDTSVLTRGEWREVRFYGITTLGGVLFNAWA
>CP029188.1|AWI30191.1|3732106_3733030_+|hypothetical-protein
MIKGNTFEATSVLLTDLLDTRPRYRSRWRARVQRDRSGGRVSIAAVAQVLAEHLWDSGEFPESEQSLPRNLKDRVRRALDGTMITTETLAWLIDAFHMDPRDAECLRATHESDSGSRPDGISDAVREPRKMVRRQWHRTVTVFERYFLDRERQLTERRTKHVIMALEDGVDSYLFNHESSVAAIEVMHGGTLGPEHRYDGLVSHEIVFPQPLKRGQRTSFEYRTAYHPAPHPPQEVRRPARGRIENFDMAVHFAPPRLPSRLWWATWSDHHLGDPVQLEPAQVCRTGRAHRYVPFVERSVVGFRWNW
>CP029188.1|AWI30192.1|3733146_3733605_+|hypothetical-protein
MGILNQFDVIDSFNQLIPGAAGYSDGYLREVAKSTQEQGLPVEMNLENNSDGLFAAMRGQGARRFLVVQPSDRKARGLRMMHYGFPVGTNLTAGWLLTGTTGNLKLFDYLDLTAVIESVHGLAVVPALYSVADGTGFAREEIRKYQSGFFGV
>CP029188.1|AWI30193.1|3733776_3734097_+|hypothetical-protein
MGWVIFILYVAGIIGTTRYAMHIFDLHWADINGSGLNGIGSRFKTMMPGTFWPIGLPILLLVAQRRQQHRQASRQSVADLMRDDETPRNTPAPQPRHGTRNPFDDL
>CP029188.1|AWI30194.1|3734132_3736835_+|hypothetical-protein
MQWPPDVRHDKAVIWADPERFAKPSCWATATARITAGPRAPETAGPAESGATMRAVSTRIVHALQGWANRAALEVRYTSPPAGRPQGIDCHLVARAAGGTPFDARASAEQLLGAAARLLPPGFVVEPADPAGLVAPMGAVTCAEVRRREEVVAPALDGYSAAEYYYLPGRLHGDGSAWDPFLRALLHTPSRVLVSLVFLPTALTPLESDAYGHLCSGLEYEAAPRTVQDYLGPLELPPDDSARRALEAWRRFGDSSAKVLARATVVGDPGTTDTVAAMLAAAVGSSYEATERGMSGGVSIVRPGDGEELRLAAQCLASGSIAPWGGHPVWQLPQAPGSIRRVPYLFGSEEAASMLVLPVPGPDGCPGLEVSPPALDQITPAPATGPDTPVLALGDRISGGPAAALHLPLDDLVGHGLIAGAPNTGKSTTLQSLLVQLWRDHTVPWLVIEPVKTEHRGMLAVPGMEALRIHTLGDSERAPWRFNPLQPPPGTTVHAHISSLMAVFRAVVPDMDGALPLILEQALEETYVRAGWDGGRTLPGRVPTLRALLPVLDTLQDDSDYRGQALNVFPALATRVRALLGGEHGYMFDTVEQTDWAGLVERPAVLELASMADPAAIDMTLGFLLSQLSAFARLRGSQNRRLRHLIVLEEAHRVFARPGGGPDRRSAEAVSALANALAELSAFGQGFVLVDQVPERLDEAATALTGVKIMHALRSEQSRQAMLGDMGAGPRAARTAATLRRGQALVSTPRTTDPLLAEIRPDPAVDTARVVVDDAVARHMAEPTRALSRLLPYELCCRDVCRDGCAPQRRERGRALAFARRREERAEAHRAPRGEPRRAPALGDLAQSMGRACAGDVADTYCAMVHVDLDRPLPGLTPQRRQSDLTAVVRKQAARAGGAR

Crispr_ID: CP029188_20

• CRISPR_ID: CP029188_20
• CRISPR_location: 3913113-3913201
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_20

Consensus_repeat	Method
GCGGCCCGGTCCTGACCGAGGCGGCCCG	CRISPRCasFinder

spacers of CP029188_20

>20.1|3913141|33|CP029188|CRISPRCasFinder
GTCCTGACCGAGGCGGCCCGCGCCCTGACCGAG

CRISPR arrays and Neighbor proteins around CP029188_20

CRISPR arrays

The CRISPR arrays of CP029188_20

>merge|CP029188|20|3913113-3913201|CRISPRCasFinder
GCGGCCCGGTCCTGACCGAGGCGGCCCGGTCCTGACCGAGGCGGCCCGCGCCCTGACCGAGGCGGCCCGGTCCTGATCGAGGCGGCCCG

>CP029188|20|20|3913113-3913201|CRISPRCasFinder
GCGGCCCGGTCCTGACCGAGGCGGCCCG	GTCCTGACCGAGGCGGCCCGCGCCCTGACCGAG
GCGGCCCGGTCCTGATCGAGGCGGCCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI30336.1|3904613_3905354_+|cytochrome-C-biogenesis-protein-ResC	unknown	unknown	gnl|CDD|280792
CP029188.1|AWI30338.1|3907189_3908269_+|c-type-cytochrome-biogenesis-protein-CcsB	unknown	unknown	gnl|CDD|274447
CP029188.1|AWI33087.1|3919694_3919769_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30342.1|3910139_3911591_+|menaquinone-biosynthesis-decarboxylase	unknown	unknown	gnl|CDD|163413
CP029188.1|AWI30350.1|3918134_3919466_+|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl|CDD|224220
CP029188.1|AWI30340.1|3909219_3909711_-|tRNA-specific-adenosine-deaminase	unknown	unknown	gnl|CDD|238612
CP029188.1|AWI30344.1|3913315_3913906_-|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|366759
CP029188.1|AWI30335.1|3903996_3904611_+|redoxin-domain-containing-protein	unknown	unknown	gnl|CDD|239264
CP029188.1|AWI30343.1|3911587_3912490_+|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl|CDD|183814
CP029188.1|AWI30334.1|3902603_3903854_+|hypothetical-protein	unknown	unknown	gnl|CDD|200598
CP029188.1|AWI30346.1|3914822_3915278_+|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|214628
CP029188.1|AWI30352.1|3920852_3921251_-|DUF1992-domain-containing-protein	unknown	unknown	gnl|CDD|378159
CP029188.1|AWI30347.1|3915372_3916536_+|aminofutalosine-synthase-MqnE	unknown	unknown	gnl|CDD|213851
CP029188.1|AWI30351.1|3919965_3920574_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228
CP029188.1|AWI30349.1|3917377_3917668_+|DUF4229-domain-containing-protein	unknown	unknown	gnl|CDD|379415
CP029188.1|AWI30341.1|3909730_3910054_-|hypothetical-protein	unknown	unknown	gnl|CDD|379161
CP029188.1|AWI30337.1|3905357_3907193_+|cytochrome-C-biogenesis-protein	unknown	unknown	gnl|CDD|377471
CP029188.1|AWI30339.1|3908547_3909078_+|hypothetical-protein	unknown	unknown	gnl|CDD|176908
CP029188.1|AWI30348.1|3916721_3917246_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
CP029188.1|AWI30345.1|3913998_3914664_+|aromatic-acid-decarboxylase	unknown	unknown	gnl|CDD|223241

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI30336.1|3904613_3905354_+|cytochrome-C-biogenesis-protein-ResC	gnl|CDD|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	5.59959e-41
CP029188.1|AWI30338.1|3907189_3908269_+|c-type-cytochrome-biogenesis-protein-CcsB	gnl|CDD|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	1.37117e-90
CP029188.1|AWI30342.1|3910139_3911591_+|menaquinone-biosynthesis-decarboxylase	gnl|CDD|163413	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family. Members of this protein family are putative decarboxylases involved in a late stage of the alternative pathway for menaquinone, via futalosine, as in Streptomyces coelicolor and Helicobacter pylori. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
CP029188.1|AWI30350.1|3918134_3919466_+|dicarboxylate/amino-acid:cation-symporter	gnl|CDD|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	1.69947e-117
CP029188.1|AWI30340.1|3909219_3909711_-|tRNA-specific-adenosine-deaminase	gnl|CDD|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.84645e-40
CP029188.1|AWI30344.1|3913315_3913906_-|rhomboid-family-intramembrane-serine-protease	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	6.69441e-21
CP029188.1|AWI30335.1|3903996_3904611_+|redoxin-domain-containing-protein	gnl|CDD|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	9.93415e-44
CP029188.1|AWI30343.1|3911587_3912490_+|4-hydroxybenzoate-octaprenyltransferase	gnl|CDD|183814	PRK12888, ubiA, 4-hydroxybenzoate octaprenyltransferase.	2.14271e-161
CP029188.1|AWI30334.1|3902603_3903854_+|hypothetical-protein	gnl|CDD|200598	cd10976, CE4_CDA_like_3, Putative catalytic domain of uncharacterized bacterial hypothetical proteins similar to insect chitin deacetylase-like proteins. The family includes many uncharacterized bacterial hypothetical proteins that show high sequence similarity to insect chitin deacetylase-like proteins. Chitin deacetylases (CDAs, EC 3.5.1.41) are secreted metalloproteins belonging to a family of extracellular chitin-modifying enzymes that catalyze the N-deacetylation of chitin, a beta-1,4-linked N-acetylglucosamine polymer, to form chitosan, a polymer of beta-(1,4)-linked d-glucosamine residues.	5.19633e-113
CP029188.1|AWI30346.1|3914822_3915278_+|Lrp/AsnC-family-transcriptional-regulator	gnl|CDD|214628	smart00344, HTH_ASNC, helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli).	1.89013e-35
CP029188.1|AWI30352.1|3920852_3921251_-|DUF1992-domain-containing-protein	gnl|CDD|378159	pfam09350, DUF1992, Domain of unknown function (DUF1992). This family of proteins are functionally uncharacterized.	5.84615e-20
CP029188.1|AWI30347.1|3915372_3916536_+|aminofutalosine-synthase-MqnE	gnl|CDD|213851	TIGR03700, mena_SCO4494, putative menaquinone biosynthesis radical SAM enzyme, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
CP029188.1|AWI30351.1|3919965_3920574_+|TetR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.90812e-14
CP029188.1|AWI30349.1|3917377_3917668_+|DUF4229-domain-containing-protein	gnl|CDD|379415	pfam14012, DUF4229, Protein of unknown function (DUF4229). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 95 and 122 amino acids in length.	8.5796e-16
CP029188.1|AWI30341.1|3909730_3910054_-|hypothetical-protein	gnl|CDD|379161	pfam13396, PLDc_N, Phospholipase_D-nuclease N-terminal. This family is often found at the very N-terminus of proteins from the phospholipase_D-nuclease family, PLDc, pfam00614. However, a large number of members are full-length within this family.	1.2003e-07
CP029188.1|AWI30337.1|3905357_3907193_+|cytochrome-C-biogenesis-protein	gnl|CDD|377471	pfam05140, ResB, ResB-like family. This family includes both ResB and cytochrome c biogenesis proteins. Mutations in ResB indicate that they are essential for growth. ResB is predicted to be a transmembrane protein.	1.20236e-178
CP029188.1|AWI30339.1|3908547_3909078_+|hypothetical-protein	gnl|CDD|176908	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	2.51427e-21
CP029188.1|AWI30348.1|3916721_3917246_+|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.53341e-11
CP029188.1|AWI30345.1|3913998_3914664_+|aromatic-acid-decarboxylase	gnl|CDD|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	1.49399e-66

Protein sequences

>CP029188.1|AWI30343.1|3911587_3912490_+|4-hydroxybenzoate-octaprenyltransferase
MSASAAAVPGVGRTRAFLRLVMIEHSVFALPFAYIAALTAMFESGGGIDWVTLLLVTVAMVGLRTFAMACNRIIDREIDARNPRTAGRELVTGAVSVRSAWTGAGIAVVVFLGAAALLNPLCLALAPVAVVPMVVYPYGKRFTNFPHAILGLAQAMGPVGAWLAVTGAWSWDAVILGLAVGVWIGGFDLIFACQDVQADRAHGVMSVPARFGIPAALWGARACHAVTLVLFAWYALATGAGAFLWLGLAVVAVAFVYEHSIVTPHDLSRLNRAFFTVNGFIGIALFVCALTDLAVRGLTP
>CP029188.1|AWI30342.1|3910139_3911591_+|menaquinone-biosynthesis-decarboxylase
MAYDDLRSLLRALEREGDLKRIKAEVDPYLEVGEIVDRVQKSGGPALLFENVRGSSMPLAMNVYGTDRRLLKALGLKAYDEISAKIGGLLKPELPHGFVGVREAFGKLGAMTHVPPKKVKDAPVQEVVLRGDEVDLDRLPALFTWPEDGGSFFNLGLTHTKDPDTGVRNLGLYRLQRHDKRTIGMHWQIHKDSRNHYQVAARRGEKLPVAIAFGCPPAVTYASTAPLPGDIDEYLFAGFVQGKRIEMVDCKTVPLQVPAQAEVVLEGWLEPGKMLPEGPFGDHTGFYTPQEDFPALTIDCVTMRRRPLLQSIVVGRPPTEDGPLGRATERFFLPLLKIIVPDIVDYHLPESGGFHNCAIVSIDKKYPKHAQKVMHAIWGAHMMSLTKLIVVVDADCDVHDLHEVSWRALGNTDYARDLTVVEGPVDHLDHSSYQQFWGGKAGIDATRKWPEEGYTRDGGWPEMVVSDPDTAALVDRRWKEYGL
>CP029188.1|AWI30341.1|3909730_3910054_-|hypothetical-protein
MLRVLMFLVPLALSIYAFIDCISTDEKEIRHIPKPLWAILVLLFPLVGSISWLIAGKDRGTRRPSRRGGWVAPDDNPEFLKSLDEDGPGQPRDRAKDPTRDEDPGTS
>CP029188.1|AWI30340.1|3909219_3909711_-|tRNA-specific-adenosine-deaminase
MDRERNREPNRELDRELARRWLSTALDEARTGRAEGGIPIGAALYGADGSLLGRGHNRRVQDGDPSVHAETDAFRAAGRQRSYRGTTMVTTLSPCWYCAGLVRQFGISRVVVGEAETFHGAHGWLAAHGVEVVVLDDPACTALMREFVDAHPELWHEDIGDDG
>CP029188.1|AWI30339.1|3908547_3909078_+|hypothetical-protein
MTEAIPYGTGETRAGDDGPVHVLHFVLLLPHPVVRVWAAVATPEGLPQWLAAADLLEPQLGGAVTLRWLNAEEGTEGAVVSGRVTAWDREAVAEYTVETYGRIRFHMEPAPADSLAAVLRFTNEFAGPDERRLDNLAGWHQHFEYLSDALDGRPADWSSWTPERFGQLRAEYAART
>CP029188.1|AWI30338.1|3907189_3908269_+|c-type-cytochrome-biogenesis-protein-CcsB
MNLAAANNESLAEFSNVLIYSAMAVYTLAFLAHIAEWTFGSRSKVGRTAAALTADGRAAAPKVRVARKGGGTTVLERPRVVTRSSPGARDVPDGPGAAGGDQQGDLYGRIAVSLTVLAFLIEAAGVVARAVSVQRAPWGNMYEFSTTFSTVAVGAYLAFLLARKNVRWIGLPLVTTVLLDLGIAVTWLYTESDQLVPALDSYWLWIHVSTAIFCGAVFYLGAVATLLYLFRDSYESKLADGVDPGSFARSVLQRLPSAASLDKFAYRINAAVFPLWTFTIIAGAIWAGDAWGRYWGWDAKEVWSFITWVAYAAYLHARATAGWKGRKAAYIALIAFACFLFNYYGVNLFVNSLHGYAGV
>CP029188.1|AWI30337.1|3905357_3907193_+|cytochrome-C-biogenesis-protein
MSETETETTTGTETTTGTGTTPGTATDTGTTTEAAGAERAGQEPGDLGGAGDRLSTAPQERAVPGSFGGPRAPGPVGALAWGVRETAGWIRWFWRQLTSMRVALILLFLLSLGAIPGSLIPQNSVDEMKVGTWKDNNEFWTPVFEKLQLFDVYSSVWFSAIYILLFVSLIGCIVPRTWQFIGQLRGRPPGAPKRLTRLPVYTTWRTEAEPEAVREAALALLRKRRFRARAAGDAVASEKGYLREVGNLLFHVSLIVMLVAFAVGQLFKSEGGKLVVEGDGFANTLTQYDDFRSGSLFDVDDLVPFSFTLDQFTGTYEPSGPQKGTPRTFEAAVTYAKGAEGKDRKAVVRVNEPLEVDGSKLYLLAHGYAPVVTVRDGKGQVVHRAAVPLLPIDDNVSSTGVIKVLDGYRNKDGEKEQLGFPAFFVPTYAGKGHGQMFSQFPALVFPALNLSAYRGSLGVDSGVPQNVYQLDTRKMKPFEDAKGEVFKQTLLPGETMKLPGGAGSITFEKEIKEWASFQISQQPGNGLALAGAVAAITGLVGSLFIQRRRVWVRAVRGEDGVTVVEMAGLGRSESAGLPEELADLAASLNAEAPTAPDPEPAEAVPAEGAEK
>CP029188.1|AWI30336.1|3904613_3905354_+|cytochrome-C-biogenesis-protein-ResC
MQNETVMSGALLLALPVAVLAGLVSFFSPCVLPLVPGYLSYVTGVTGTDLAEARKGRMASGAALFVLGFSAVFVSGGALFGFFGWTLQEHREVLTTVLGVLMILMGLFFMGLMPFLTQREFRFHKRPATGLVGAPVLGALFGIGWTPCIGPTLASVTVLSTQQGSAGRGALLTAAYCLGLGLPFVLAAVAFRRALGAFGWVRRHYAWVTRIGGGMMIATGALLLTGAWDVLVQQMQSWSSGFQVGI
>CP029188.1|AWI30335.1|3903996_3904611_+|redoxin-domain-containing-protein
MSLVRASRRTLITVGALAAALTLSACTGDAGGKSGGGGDTNFVAGTSGIVTVAEGKRTTAPRLSGKDLTGKPLDLADYKGKVVVLNLWGSWCAPCRAEAPYLAEVAEETKSKGVEFIGINTRDPQTGPALAFEKDYAVGYPSFHDPIGKLILKFPKGSLNPQAIPSTLVIDREGKIAARALTALDDKQLRSMIDPVVAEKAAEQ
>CP029188.1|AWI30334.1|3902603_3903854_+|hypothetical-protein
MRDITRRSLLGAGLGAAAAIGAAGCGVGSGGGGEPGRGGGETGGGGGKNAGAAKKPVRLIGDGSTADTGKQPRQPDAPEPLEPGQAPPQFVIFSWDGAGEVGNGLFPRFLELAREHDAAMTFFLSGLYLLPESRKSLYRPPNNPVGASDIGYLTDAHIKDTLKYVRQAWLEGHEIGTHFNGHFCGGSGSVGNWTPAQWENEIDQAVSFVTRWKSNSGWTELDPLPFDYGRELVGGRTPCLLGQESLLPTARKLGWRYDASSPGGRQKWPEKRGGVWDLPLQAMPFPGHSFEVLSMDYNILANQSRNSTNGVPSRYPGWRRQATEAYLGGFRRAYESNRAPFFIGNHFEQWNGGIYMDAVEEALKSMAGKKDVRLVSFRQFCDWLDVQDPGILAKLRSLEVGQSPDGGWNAYLGNAG
>CP029188.1|AWI30344.1|3913315_3913906_-|rhomboid-family-intramembrane-serine-protease
MSTTSLEPSRTDRAKAAGKLMLAWVALLWALEAVDHVTGHSLDTYGITPREPAELADVVPASFLHFGFGHLASNTVPLLVFGFLAALGGIRRFLAVAALIIVADGVGVWLISPPGSNTAGASGLVFGLFGYLLVRGFVDRRPVDIGVGLAVGAIWGSSILLGLSPANTGVSWQGHLIGLVAGVVAAFVFRRSAVRP
>CP029188.1|AWI30345.1|3913998_3914664_+|aromatic-acid-decarboxylase
MNDANRTPWVVGVSGASGTPYAAAVLRGLLDAGESVDLVVSRASRLTLLDETGIAFRDGHWQDDLRTWLERGADGKPGTFRVDVGAVRHWAAGDLAAGPSSGSYPVKGMLIVPASTACVAGVALGLSKDLLQRAASVTLKERRRLVVAVRETPLNGQTLRHLVALDEAGAVVLPASPAFYAGATHIQDLVDFVAGRVLDAAGVAHGLYRRWEGELGGSRAD
>CP029188.1|AWI30346.1|3914822_3915278_+|Lrp/AsnC-family-transcriptional-regulator
MDAVDRQLIQALRENGRASYAELGRLVGLSGPSVTDRINRLEAAGVITGYRATVDAASLGLGVTALIGISLSDAADHEDVAQRLRDLAEIEDCWFIAGDDSYMLKVRASDVDGLEKTIRRLSGTKGVSRTRTTIVLSTKWENRVGDLPEEV
>CP029188.1|AWI30347.1|3915372_3916536_+|aminofutalosine-synthase-MqnE
MDAGLKRELEEKVRAGERLTREDGIALYESDDLAWLGGLAHEVRTRKNGDVVHFNVNRHLNMTNVCTASCAYCSFQRKPGEKDAYTMRIEEAVRLAKAMESENLTELHIVNGLHPNLPWRYYPRSLRELKQALPDVSLKAFTATEIHHFETISGLTASEILDELIDAGLESLTGGGAEIFDWEVRQHIVDHRTHWEDWSRIHRLAHEKGLKTPCTMLYGHIEEPRHRVDHVLRLRELQDETGGFQVFIPLRYQHDFVDMKDGKVRNRLQARTTMATGAEALKTFAVSRLLFDNVPHVKVFWVMHGVQTAQLALQHGADDMDGSVVEYKITHDADNYGTPNKLTRDDLLELIRDAGFRPVERNTRYEVIREYPGPDGDRRESPQPMRV
>CP029188.1|AWI30348.1|3916721_3917246_+|GNAT-family-N-acetyltransferase
MALEFSLDPPVGPVLRDGILGLWTDVSNADGAVGFVPPVSPEDVRPELVRHLVAMAEGRARLLVGRDADGEVAAAAFLTFNAHRLMRHWIWLYTVMVHPRHQGKGYGRQLLAAAADAARGMSGITAIRLTCRGGAGLERFYASCGYKEVGRVPDAIQVSDGDYRDDITMLLPLV
>CP029188.1|AWI30349.1|3917377_3917668_+|DUF4229-domain-containing-protein
MSDSKTSATLRYTLMRFGIFAGCFLVLWGLVYLRVLPRGLGDSNLLWVLVLSVLISAPLSVVLLRRQREAMSEQIVAKVDRAKTRLEANRTREDVQ
>CP029188.1|AWI30350.1|3918134_3919466_+|dicarboxylate/amino-acid:cation-symporter
MSANSATPTRASRMPKVPFWAQIVAGLVAGVLLGWLARSQDVTWLRTTLEQIGDIFVQLLKLAVAPLVFFAILVSITNLRKVNNAARLAGRTLLWFMITSLIAVAIGLTLGLLTNPGAGTGLTPKDGAKPEKAGSWIDFLTGIVPTDVITPFTELNVLQIVFMAAVAGAAALKLGDRAQPILAFSESVLELLQKALWWVIRLAPIGTVGLIGYAIADYGWDLIGKYATFTADVYIGCALVLFGVYPLLLATVAKVNPLQFFRGAWPAIQLAFVSRSSVGTMPVTQKVTERLGVPKEYTSFAVPFGATTKMDGCAAVYPALAAIFIAQIFDVPLGVQDYVLIAFVSVVGSAATAGLTGATVMLTLTLSTLGLPLEGVGLLMAIDPILDMMRTATNVAGQAVVPVIVAARERILDRDAYDSASASPVDEGGTPEPEQKEAVPATV
>CP029188.1|AWI33087.1|3919694_3919769_+|hypothetical-protein
MSKRGNKRRARKKRKANHGKRPNA
>CP029188.1|AWI30351.1|3919965_3920574_+|TetR-family-transcriptional-regulator
MREQQMLDAAVQTFGQRGYRPASMDEIAELAGVSKPLVYLYLNSKEDLFTACIRRESAALVAAVRAAVDPGLPADRQLWEGLTAFFRHTNEHPDAWAVLHRQARTHGEPFAAEVAVLRDEIVTFVTGLIGAAAREAHGPGEVAAGEAAGLAQALVGAAESLAGWANDTPGVSARQAAATLMNFAWEGLGNLMKGERWAPPAR
>CP029188.1|AWI30352.1|3920852_3921251_-|DUF1992-domain-containing-protein
MTERKPPGVSFESWVDKQIRDARERGEFEELPGLGKPLPDDLAPYDELWWVKGKMHREGIAVLPPALALRKEAEDALEKAHRAPSETAVRRIITEINEKITKMLLMPPPGPPLGRKPYDVDEVVREWRLRQG

Crispr_ID: CP029188_22

• CRISPR_ID: CP029188_22
• CRISPR_location: 4570646-4570724
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_22

Consensus_repeat	Method
GGGGTGGTGGTCGGGTGACGGGTGGG	CRISPRCasFinder

spacers of CP029188_22

>22.1|4570672|27|CP029188|CRISPRCasFinder
TGGGTCGGCGCGTAGCGCCGTCGTTGT

CRISPR arrays and Neighbor proteins around CP029188_22

CRISPR arrays

The CRISPR arrays of CP029188_22

>merge|CP029188|22|4570646-4570724|CRISPRCasFinder
GGGGTGGTGGTCGGGTGACGGGTGGGTGGGTCGGCGCGTAGCGCCGTCGTTGTGGGGTGGTGGTCGGGTGACGGGTGGG

>CP029188|22|22|4570646-4570724|CRISPRCasFinder
GGGGTGGTGGTCGGGTGACGGGTGGG	TGGGTCGGCGCGTAGCGCCGTCGTTGT
GGGGTGGTGGTCGGGTGACGGGTGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI30859.1|4573240_4576111_+|hypothetical-protein	unknown	unknown	gnl|CDD|377101
CP029188.1|AWI30855.1|4568857_4569970_+|NAD-dependent-dehydratase	unknown	unknown	gnl|CDD|187551
CP029188.1|AWI30850.1|4563248_4564853_+|stress-protein	unknown	unknown	gnl|CDD|376767
CP029188.1|AWI30849.1|4562540_4563137_+|M48-family-peptidase	unknown	unknown	gnl|CDD|320703
CP029188.1|AWI30853.1|4566696_4567221_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239646
CP029188.1|AWI30852.1|4565567_4566323_+|AIM24-family-protein	unknown	unknown	gnl|CDD|376704
CP029188.1|AWI30851.1|4564867_4565548_+|AIM24-family-protein	unknown	unknown	gnl|CDD|376704
CP029188.1|AWI30848.1|4560973_4562197_-|hypothetical-protein	unknown	unknown	gnl|CDD|366360
CP029188.1|AWI30864.1|4583117_4583744_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
CP029188.1|AWI30860.1|4579458_4579875_-|transcriptional-repressor	unknown	unknown	gnl|CDD|133478
CP029188.1|AWI30857.1|4571256_4572324_+|PDZ/DHR/GLGF-domain-containing-protein	unknown	unknown	gnl|CDD|226011
CP029188.1|AWI30866.1|4584139_4585150_-|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl|CDD|206747
CP029188.1|AWI30865.1|4583709_4584033_-|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	unknown	unknown	gnl|CDD|224987
CP029188.1|AWI30854.1|4567217_4568636_-|hydrolase	unknown	unknown	gnl|CDD|378392
CP029188.1|AWI30856.1|4570174_4570633_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|238385
CP029188.1|AWI30862.1|4581563_4581986_-|CBS-domain-containing-protein	unknown	unknown	gnl|CDD|341405
CP029188.1|AWI30847.1|4559565_4560981_-|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl|CDD|270872
CP029188.1|AWI30861.1|4580028_4581480_+|catalase	unknown	unknown	gnl|CDD|163712
CP029188.1|AWI30863.1|4582156_4582954_-|histidinol-phosphatase	unknown	unknown	gnl|CDD|273949
CP029188.1|AWI30858.1|4572456_4573023_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI30859.1|4573240_4576111_+|hypothetical-protein	gnl|CDD|377101	pfam03699, UPF0182, Uncharacterized protein family (UPF0182). This family contains uncharacterized integral membrane proteins.	0
CP029188.1|AWI30855.1|4568857_4569970_+|NAD-dependent-dehydratase	gnl|CDD|187551	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs. Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.17935e-89
CP029188.1|AWI30850.1|4563248_4564853_+|stress-protein	gnl|CDD|376767	pfam02342, TerD, TerD domain. The TerD domain is found in TerD family proteins that include the paralogous TerD, TerA, TerE, TerF and TerZ proteins It is found in a stress response operon with TerB and TerC. TerD has a maximum of two calcium-binding sites depending on the conservation of aspartates. It has various fusions to nuclease domains, RNA binding domains, ubiquitin related domains, and metal binding domains. The ter gene products lie at the centre of membrane-linked metal recognition complexes with regulatory ramifications encompassing phosphorylation-dependent signal transduction, RNA-dependent regulation, biosynthesis of nucleoside-like metabolites and DNA processing linked to novel pathways.	2.2018e-53
CP029188.1|AWI30849.1|4562540_4563137_+|M48-family-peptidase	gnl|CDD|320703	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin. M48 YhfN-like protease is considered as a CaaX prenyl protease 1 homolog, with most of the sequences in this family as yet uncharacterized. It contains the zinc metalloprotease motif (HEXXH), likely exposed on the cytoplasmic side. It is probably associated with the endoplasmic reticulum (ER), regardless of whether its genes possess the conventional signal motif (KKXX) in the C-terminal. Proteins in this family proteolytically remove the C-terminal three residues of farnesylated proteins. This novel family of related proteins consist of the soluble minimal scaffold similar to the catalytic domains of the integral-membrane metallopeptidase M48 and M56, thus called minigluzincins.	1.54228e-25
CP029188.1|AWI30853.1|4566696_4567221_-|NUDIX-hydrolase	gnl|CDD|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.95349e-42
CP029188.1|AWI30852.1|4565567_4566323_+|AIM24-family-protein	gnl|CDD|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	8.04106e-35
CP029188.1|AWI30851.1|4564867_4565548_+|AIM24-family-protein	gnl|CDD|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	7.61766e-46
CP029188.1|AWI30848.1|4560973_4562197_-|hypothetical-protein	gnl|CDD|366360	pfam00899, ThiF, ThiF family. This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1.	1.88184e-21
CP029188.1|AWI30864.1|4583117_4583744_+|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.12924e-05
CP029188.1|AWI30860.1|4579458_4579875_-|transcriptional-repressor	gnl|CDD|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	2.80093e-36
CP029188.1|AWI30857.1|4571256_4572324_+|PDZ/DHR/GLGF-domain-containing-protein	gnl|CDD|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	7.04929e-77
CP029188.1|AWI30866.1|4584139_4585150_-|ribosome-small-subunit-dependent-GTPase-A	gnl|CDD|206747	cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases. YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain.	3.94715e-88
CP029188.1|AWI30865.1|4583709_4584033_-|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	gnl|CDD|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	1.22008e-28
CP029188.1|AWI30854.1|4567217_4568636_-|hydrolase	gnl|CDD|378392	pfam10103, Zincin_2, Zincin-like metallopeptidase. This family of proteins has a conserved HEXXH motif, suggesting they are putative peptidases of zincin fold. The structure of this family has similarity to Peptidase_M1 (pfam01433, Structure 3CMN).	9.80185e-167
CP029188.1|AWI30856.1|4570174_4570633_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	9.60259e-52
CP029188.1|AWI30862.1|4581563_4581986_-|CBS-domain-containing-protein	gnl|CDD|341405	cd09836, CBS_pair_arch, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	2.38197e-24
CP029188.1|AWI30847.1|4559565_4560981_-|AarF/ABC1/UbiB-kinase-family-protein	gnl|CDD|270872	cd13970, ABC1_ADCK3, Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3. This subfamily is composed of the atypical yeast protein kinase Abc1p, its human homolog ADCK3 (also called CABC1), and similar proteins. Abc1p (also called Coq8p) is required for the biosynthesis of Coenzyme Q (ubiquinone or Q), which is an essential lipid component in respiratory electron and proton transport. It is necessary for the formation of a multi-subunit Q-biosynthetic complex and may also function in the regulation of Q synthesis. Human ADCK3 is able to rescue defects in Q synthesis and the phosphorylation state of Coq proteins in yeast Abc1 (or Coq8) mutants. Mutations in ADCK3 cause progressive cerebellar ataxia and atrophy due to Q10 deficiency. In algae and higher plants, ABC1 kinases have proliferated to more than 15 subfamilies, most of which are located in plastids or mitochondria. Subfamily 13 (ABC1K13) of plant ABC1 kinases belongs in this subfamily with yeast Abc1p and human ADCK3. ABC1 kinases are not related to the ATP-binding cassette (ABC) membrane transporter family.	4.79443e-93
CP029188.1|AWI30861.1|4580028_4581480_+|catalase	gnl|CDD|163712	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.	0
CP029188.1|AWI30863.1|4582156_4582954_-|histidinol-phosphatase	gnl|CDD|273949	TIGR02067, his_9_HisN, histidinol-phosphatase, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes. The role as histidinol-phosphatase wsa first proven in Corynebacterium glutamicum. [Amino acid biosynthesis, Histidine family].	1.8212e-101

Protein sequences

>CP029188.1|AWI30856.1|4570174_4570633_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MGSMNDHPGEQAAEDPIRLLAIRDTPLSVDEVFRAVGDAAAGGTALFVGTVRNHDGGADVDALGYSCHPTAEAEMRRIAEKVTAEYPVRALAAVHRVGDLEIGDLAVVVAVSCPHRGEAFEACRTLIDDLKHEVPIWKHQQFSDGTEEWVGA
>CP029188.1|AWI30855.1|4568857_4569970_+|NAD-dependent-dehydratase
MSSPDPQVRATRNPSTPAAGRGPVVAVTGAASGVGDLLTRRLVASDDIGRVIAVDERRGDVPEAHWHVLDVRDPAIAEKFRGADVVVHLALDLDLETDSAARTAYNVRGTQTVLTAAAAAGVRRVVLCTSAMVYGALADNDVPLSEDAELRATAEATAVGDLLEIERLGRRAPRAHPGLNVTVARPAVLVGGTDTALTRYFESPRLLVVAGSRPTWQFCHVEDLVSALEYAALEKVDGEFAVGCDGWLEQEEVEELSGIRRMELPSAVALGAAARLHRIGLTPSPAGDLAYTMHPWVVSVGRLHDAGWRPRWTNEEVLGALLEEVQGRHTVAGRRLGRKDATAAAGAAGATVALLGTAALVRRARKRRGL
>CP029188.1|AWI30854.1|4567217_4568636_-|hydrolase
MSDTPFGFGLPPEEPENGDEGKKKDPAGGGQGSGGGQGGPANPFGFGFPGAGGPGGGADNPFAAMFGSLNPADLGAAFQQLGQMLSYEGGPVNWDMAKQIARQTVSQGTQDGTKDSSVGPAERAAVEEAVRLADLWLDDATSLPSGAGTAVAWSRAEWVEATLPAWQQLVDPVAERVGVAMGDVLPEEMQAVAGPLIGMMRSMGGAMFGQQIGQAVGVLAGEVVGSTDIGLPLGPARKAALLPLNIEAFGKDLGVPKDEIRLYLALREAAHQRLFAHVPWLRSHLFGAVEGYARGIKVDTSKLEDVVGQFDPAHPEQVQEALQQGMFQPEETPEQKAALARLETALALVEGWVDAVVHNAARNRLTSADALRETLRRRRASGGPAEQTFATLIGLQLRPRRLRDASRLWASLTDARGVDGRDGLWAHPDMLPTATDLDDPDGFVHREQLDFSELDKMLGEAAEGRDGDDTDS
>CP029188.1|AWI30853.1|4566696_4567221_-|NUDIX-hydrolase
MSLYDDAIRVLEEYDGGQAELRRTYLDHLADRPDGVWKACRDGHITASALVVDPARERVLLTLHRKLGRWLQMGGHCEPGDTALADAALREAIEESGITGLTLLPGGPVTLDRHAIPAPCHWHLDVQYAALAAPDAAPAISDESLDLRWFGYAEVADVADASVVRLLERTRARL
>CP029188.1|AWI30852.1|4565567_4566323_+|AIM24-family-protein
MQSPLFSHAEQQSQDRYVVQNPQLLRVALTGHDDVLARKGAMVAYQGLIDFDGEYQPGNRRGARARTGEGLDLMRCSGQGTVYFANLAQYVHVVDVDQEGITVDSAYVLALDSTLHTEVIAVDSQYGISGSGKYQLNISGRGKVALMTSGQPLMMQVTPDKYVNVDADAIVAWSSSLRVQMQAQTHSTGVWRRRGNTGEGWELSFLGQGFALVQPSEVLPPQNAQVGQGVRAQFGAGQHGSRGQNQGNVWS
>CP029188.1|AWI30851.1|4564867_4565548_+|AIM24-family-protein
MNQQLAGFAPTPVVARMENHGRTMLKVAMASGQDLFARAGSMVAYEGFIQYEPNPPAVRQIAGQWVTGEGAPIMKCSGDGLLYLADYGADVVVVNLDNDSISVNGTNLLAFDAHLQWGVERVKGLAKFAGQGLWNITVSGTGWVALTSRGTPVVVDCGRGEDETYVDPDALVAWSPNLKVKGKRSFKASSLIGRGSGEAFQMAFSGQGIVVVQPSEDSTDRLRVRG
>CP029188.1|AWI30850.1|4563248_4564853_+|stress-protein
MAREFQRGHKAKISDLTPGTDLYVGVQISAPGLSFDISCFGLDADERLSDDRYFVFFNQPKSPEESIQLLGAQAGDTESFRVTLDRLPAHIHRLSFTATVDGAGDMSQIGPGYIRIVAGGEEVVRYAFTGAEFSTERAVMLGDFYLKGVWRFAAVGQGFDGGLDALLKNFGGEVAEEEPAPQQPPQAVPGFAPPAAPAPAAAPPPFGVPAAPPAPQAGRPPQPAPGFGAPAPADPQVHSAPTIAAPMTPPVGTVPPQAPPPSYGQPPQQPQFGQIPGPPAGQVPPAPPAAYGQQPAPYGVPGVPQGVPQGVPQTGPGLQAALQPYKELPTGQRWTPQNQQLMRVDLAMGGTSVLARQGSMVMYQGKVDFGYKGAGFSGRIVGNATGQEMQLMRCSGRGQVFLAEGGAHLHPIELQGDAICVSAENVLAFDESLQHEVRRIEGHGIPGGALFTMQFQGTGTVVVKTHGTPVVLPVTPTTFADSNAVVAWSAASQVILSSQVRLRRNAYPGHSGETVNLQFRGAPGNFVVVQPYEV
>CP029188.1|AWI30849.1|4562540_4563137_+|M48-family-peptidase
MPADRPLRAPSQHRSTTAQPSHHAATSAVEVRRSARRRRTVSAYRDGDRTVVLIPARMTEAEEQRWVTVMLDKLAAQESRRTLGDGELAERARRLSEQYLDGRARPASVRWVTNQNTRWGSCTPAEGSIRLSHRLKGMPEYVVDYVLLHELAHLLVPGHGPRFWRLLDGYPRTERARGYLEGVVAADRLPHLPAARGE
>CP029188.1|AWI30848.1|4560973_4562197_-|hypothetical-protein
MHPVVKPALRRAWRDLRYVQFGMTAAHAVVMGPVDTATGSLLSRFDGTRGLPRLRAEARAMGLPDGHVDALLERLTEAGLVDDVTGGGPAVSALRKRKEAYDRLRPDLASLSVVHPEPGGGAARLAARGAMRVQVRGAGRVGAALAAVLSASGVGRVDVLDGGRVEPWDVAPGGLPAEAVGERRAVSARQLVLRSAPGRGRRTARCSDGDPPEPPPLSLVIVTPRDGFPAYAPDPVAAEDWMATGTPHLYAGVVEASGVVGPLVLPGGSACAGCLALGRADRDPVWPRMAAQWRTPRHRGSSPGPCDLGLATAVAGMAASHALSFLDGELPACTGTRWEVSLPLLEWRSRRIRPHRDCPCGAAGQTEGERASGAGTPHDTMAGAAASTERFRMTDAARQLGIGGAHV
>CP029188.1|AWI30847.1|4559565_4560981_-|AarF/ABC1/UbiB-kinase-family-protein
MSDLPRKAVTRTAKLAALPLGFAGRATWSLGKRIGGRSAEIVARELQQRTAEQLFRVLGELKGGAMKFGQALSVFESALPEEVAGPYRAALTKLQDAAPPMPTRTVHEALAERLGDDWRTLFLEFEDKPAAAASIGQVHRAVWHDGREVAVKVQYPGAGEALLSDLSQLSRFARLLGPLIPGMDVKPLIAELRDRVSEELDYELEARAQREHAAEFAGDPDVVVPDVVHQADQVLVTEWIDGTPLAEVISGGTQEQRDRAGQLLARFLFSGPARTGLLHADPHPGNFRLLPPAGTAEGEGDPAGWRLGVLDFGTVDRLPGGLPRTIGDSLRMTLAREAEAVYGVLCEEGFVKESIDLDPDAVLEYLLPIIEPAEADRFTFTRGWMRTQAARIADPRSPAHQLGKQLNLPPSYLLIHRVTLSTIGVLCQLNATVRLRDELESWLPGFLAGPETGPETGSETGAEAGGVTAEV
>CP029188.1|AWI30857.1|4571256_4572324_+|PDZ/DHR/GLGF-domain-containing-protein
MLASTLVLIVLLCVGVFMTPPYSEMTPGPTVNTLGDSGGEPVLRISGRKTYPTSGHLNMTTVRVTGADYKMNLAEVVYGWLAHDNVVVPHETLYPDGKTEEQSNQENAEEFSQSQESAKVAALRELGIPVSSRVVVSSVRKDSPAQGALHAGDVIRAVDGTPVKKPDDVSKAVVKHKPGAKVTFTIVPAKEAAAAEKAGREPTTSQDVQVGTVRSEQAKRTIVGITAGTDHTFPFSVDIKLADVGGPSAGLMFALGIVDKLSPVDLTGGRFIAGTGTIDDRGVVGPIGGIEMKLVGARNAGAEYFLTPSDNCAAAASDVPDGLTLVRVKTIDDATKSLEKIRTGKTAGLPGCSEG
>CP029188.1|AWI30858.1|4572456_4573023_-|hypothetical-protein
MSNVSPGGPPMAASPLTRAVLEIDEYASGLGWDQPARLFALVDTAQLRAQEPGLAAQLGLDEPDGADAAAPLTPVEQDEIPSGTPLDEFLGTIAWPDAVAGCALTVERLMLPPSAETSVPEGLDEAGLAAWVAAHPDRQEVRMTVAVLRDGARESALRLREKDSPTEVLTGADLVPGLAEALSATFEV
>CP029188.1|AWI30859.1|4573240_4576111_+|hypothetical-protein
MGRPSRRVRTLLMTLGVLAVLAMAFVMFAGFWTDWLWYRSVAYSSVFTTTLWTKIGLFVVFGLLMAASVGLNIWLAHRLRPPLSAMSLEQQSLDRYRMGIAPYKKWALLGITALVGLIAGASASSQWRTWLMWVNGVPFGQKDPQFGMDVAFYSFDLPWYRFLLGFGFAAVVLSLIAAVLTHYLYGGLRVTSPGARATAAATGHLSVLLGIFVALKAVAYWLDRYGLAVKSSDFKAAGNWTGLRYVDANAYLPAKTILFCIAVICALLFFATLWRRTWQLPMIGFGLMVLSAILIGGLYPAIVQKFQVQPNEQAKEAPYIKKNIDATREAYGIDAAKAENYGGKGDPKRKAQQREQAATAASYRLVDSNIVSPAFQQLQQERKYYQFPATLDVDRYTGPDGKPQDTVIGLRELNIKGIPKRNWINDHFTYTHGFGAIAAKGTNTITDEDQGTVGAPDFIESGLPTKGQLGTYEQRVYYGEKTEQYSIVGGPQKELDYEKNGEVTTSFKGKSGVDLSGAFNRAAYAVAFSEPQILYSGAIGDGSRILYNRTPKERVEAVAPWLTIDGDAYPAVVDGRIKWIVDAYTTTNGYPYASRTTLGDTTADSLTDSQRAVVAQQNQVNYIRNSVKATVDAYDGTVDLYQWDTKDPVLKTWMKAFPDTVKPKGEIEPDLLAHLRYPQDMFKVQRELLTRYHVTDPEQFYTGSDAWQVPNDPTQKDGSAVPPYYLSLKMPGEQEQKFSLTTTFTPSGRPNLGAFMAVDADANSKDYGSIRLLRVTSTVQGPSQVQSELNSVPEVATFVRDLRGTDSEIDYGNLLTVPLDGGFLYVEPVYARGGAANYPLLKKVAVSYGGKPVFKDSLDEALNAVFGVDGAEPPPTTQPPAEPGDTTPQPPATGSAALKQAIADAQKAYEAGQEALKKNDWTAYGKAQADLQAALDRAAAAQSQAAPGAPSRKPGG
>CP029188.1|AWI30860.1|4579458_4579875_-|transcriptional-repressor
MSDLLERLRGRGWRMTAQRRVVAEVLDGEHVHLTADEVHARAVERLPEISRATVYNTLGELVSLGEILEVATDHRAKRYDPNAHRPHQHLVCARCGAIRDVHPDGNPLTDLPDSERFGFTISDVEVTYRGLCPSCASA
>CP029188.1|AWI30861.1|4580028_4581480_+|catalase
MSQGPLTTEAGAPVADNQNSETAGAGGPVLVQDQLLLEKLAHFNRERIPERVVHARGAGAYGTFTVTADVTRYTRANFLSEVGKRTETFLRFSTVAGSLGAADAVRDPRGFALKFYTEEGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRDPYTGSQEADNVWDFWGLSPESTHQVTWLFGDRGIPASYRHMNGYGSHTYQWNNEAGEVFWVKYHFKTDQGIRNLVQAEADRLAGADPDSHQRDLREAIERGDFPSWTVQVQIMPAADAATYRFNPFDLTKVWPHEDYPPIEIGRLELNRNPENIFAEVEQSVFSPAHFVPGIGPSPDKMLQGRLFAYGDAHRYRVGINADHLPVNRPRATEARSHSRDGLLYDGRHKGAKNYEPNSFGGPFQTDRPLWQPVPVSGATGGHEAPSHSEDDDFVQAGNLYRLMSEEERGRLVGNLAGFIAKVSRDDIAERAIGNFRRADGDFGKRLEAAVQALRG
>CP029188.1|AWI30862.1|4581563_4581986_-|CBS-domain-containing-protein
MLVRDAMSTVVLTIGPAHTLRQAARLMAARRVGAAVVLDPDTSGLGILTERDVLVSLGAGQDPDLESAAAHTTTDVVFAAPTWTLEEAAGAMAHGDFRHLIVLDAQGPVGVVSVRDIIRCWAPARHRTDRTDRTEATLAG
>CP029188.1|AWI30863.1|4582156_4582954_-|histidinol-phosphatase
MADYHDDLRLAHVLADAADAATMDRFRALDLKVETKPDMTPVSEADKAAEELIRHQLQRARPRDAVLGEEYGIEGTGPRRWVVDPIDGTKNYVRGVPVWATLISLMEAGEGGYQPVVGVVSAPALGRRWWAAKGAGAYTGRSLSAATRLHVSKVARLSDASFAYSSLGGWEERGRLGGFLDLTRAVWRTRGYGDFWPYMMVAEGSVDICAEPELSLWDMAANAIVVQEAGGTFTGLDGVHGPHSGNAAASNGLLHGELLEYLNRD
>CP029188.1|AWI30864.1|4583117_4583744_+|TetR-family-transcriptional-regulator
MPTAREALLNAAHAALAGRPWSAVRMVDVASAASVSRQTLYNEFGGKDGLARALVRREADAYLSGVDRVLAEPAAAGEQLVRLAEWTVAEACSRPLLRALLTGWWSDRLPAPRPAVRSAAGPAVPAQRRADAGHPAPCELVAAVRDRSLAALEQGAGRRTEEEAAEAGRRCELAVRLALSCVVAGPSEGVGRLVRTAVSGPGWRAAGR
>CP029188.1|AWI30865.1|4583709_4584033_-|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter
MAWLLVVVAGFLETGFAICLKLSHGFTRLWPTIAFAVFAVSSFGLLTLALRKLDVGPAYAVWTGIGAAGTAIYGMVFLGEIASTLKIVSITLVVAGVIGLQLSSPAH
>CP029188.1|AWI30866.1|4584139_4585150_-|ribosome-small-subunit-dependent-GTPase-A
MRRYGKHTDEDDVRVRPNRKGNRPRTSIRPKHEDAAEGMVLTVDRGRLTCLVGDRTVVAMKARELGRKAAVVGDRVGLVGDLSGAKDTLARIVRIEERASVLRRTADDDDPYERVVVANADQLAIVTALADPEPRPRLIDRCLVAAYDGGLEPLLVLTKSDLAPASTLLDLYGALDIPYVVTSRDELYAGEAATVVREYLDGRITAFVGHSGVGKTTLVNALVPEERRRTTGRVNAVTGRGRHTTTSALALPLAGAGGWVIDTPGVRSFGLHHVDPSRVIHAFPDLEPGTEHCPRACSHDEPDCALDEWVAQGHADPARLYSLRRLLATRERREGD

Crispr_ID: CP029188_23

• CRISPR_ID: CP029188_23
• CRISPR_location: 4654236-4654316
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_23

Consensus_repeat	Method
GGCTGTTGCGCGGCCCCGGCGGTG	CRISPRCasFinder

spacers of CP029188_23

>23.1|4654260|33|CP029188|CRISPRCasFinder
TTCCGGGGTCCGGTCGGTGTTGCGCGGCCCCGG

CRISPR arrays and Neighbor proteins around CP029188_23

CRISPR arrays

The CRISPR arrays of CP029188_23

>merge|CP029188|23|4654236-4654316|CRISPRCasFinder
GGCTGTTGCGCGGCCCCGGCGGTGTTCCGGGGTCCGGTCGGTGTTGCGCGGCCCCGGCGGTGTTCCGCGGTCCGGTCGGTG

>CP029188|23|23|4654236-4654316|CRISPRCasFinder
GGCTGTTGCGCGGCCCCGGCGGTG	TTCCGGGGTCCGGTCGGTGTTGCGCGGCCCCGG
CGGTGTTCCGCGGTCCGGTCGGTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI30917.1|4642251_4642434_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI33141.1|4642856_4643912_-|transcriptional-regulator	unknown	unknown	unknown
CP029188.1|AWI30930.1|4666896_4667379_+|hypothetical-protein	unknown	unknown	gnl|CDD|214939
CP029188.1|AWI33143.1|4661821_4662316_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
CP029188.1|AWI33142.1|4646545_4647286_+|SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379312
CP029188.1|AWI30927.1|4658777_4661621_+|peptidase-M4-family-protein	unknown	unknown	gnl|CDD|341060
CP029188.1|AWI30926.1|4657598_4658627_-|hypothetical-protein	unknown	unknown	gnl|CDD|224296
CP029188.1|AWI30923.1|4653523_4654219_-|spermidine-synthase	unknown	unknown	gnl|CDD|223498
CP029188.1|AWI30928.1|4662375_4663191_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30925.1|4654731_4657134_+|endopeptidase-La	unknown	unknown	gnl|CDD|223542
CP029188.1|AWI30932.1|4667769_4668393_+|ATP-binding-protein	unknown	unknown	gnl|CDD|225138
CP029188.1|AWI30919.1|4645055_4646519_+|asparagine-synthase	unknown	unknown	gnl|CDD|238949
CP029188.1|AWI30920.1|4647483_4651317_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	unknown	unknown	gnl|CDD|237030
CP029188.1|AWI30916.1|4641447_4642221_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30933.1|4668457_4669699_+|oxygenase	unknown	unknown	gnl|CDD|380046
CP029188.1|AWI30929.1|4663564_4666900_+|histidine-kinase	unknown	unknown	gnl|CDD|377989
CP029188.1|AWI30918.1|4644379_4644574_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI30931.1|4667375_4667789_+|DUF742-domain-containing-protein	unknown	unknown	gnl|CDD|283084
CP029188.1|AWI30922.1|4652696_4653440_-|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|223816
CP029188.1|AWI30921.1|4651608_4652700_-|two-component-sensor-histidine-kinase	unknown	unknown	gnl|CDD|223715

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI30926.1|4657598_4658627_-|hypothetical-protein	gnl|CDD|224296	COG1378, COG1378, Predicted transcriptional regulators [Transcription].	9.20309e-10
CP029188.1|AWI30931.1|4667375_4667789_+|DUF742-domain-containing-protein	gnl|CDD|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	4.95044e-34
CP029188.1|AWI30923.1|4653523_4654219_-|spermidine-synthase	gnl|CDD|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	7.86235e-19
CP029188.1|AWI33142.1|4646545_4647286_+|SAM-dependent-methyltransferase	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.23619e-10
CP029188.1|AWI30922.1|4652696_4653440_-|DNA-binding-response-regulator	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.80741e-82
CP029188.1|AWI33143.1|4661821_4662316_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.56002e-15
CP029188.1|AWI30930.1|4666896_4667379_+|hypothetical-protein	gnl|CDD|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	3.36716e-12
CP029188.1|AWI30925.1|4654731_4657134_+|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
CP029188.1|AWI30932.1|4667769_4668393_+|ATP-binding-protein	gnl|CDD|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	3.66867e-46
CP029188.1|AWI30919.1|4645055_4646519_+|asparagine-synthase	gnl|CDD|238949	cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .	4.01682e-08
CP029188.1|AWI30920.1|4647483_4651317_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	gnl|CDD|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0
CP029188.1|AWI30933.1|4668457_4669699_+|oxygenase	gnl|CDD|380046	pfam17885, Smoa_sbd, Styrene monooxygenase A putative substrate binding domain. This domain is found in the 46 kDa FAD-specific styrene epoxidase (SMOA) protein, comprises a part of the styrene monooxygenase (SMO) two-component flavoprotein monooxygenase enzyme. Structural analysis indicates that SMOA monomer comprises two globular domains spanned by a long alpha-helix. This domain contains a putative substrate binding site.	2.74943e-58
CP029188.1|AWI30929.1|4663564_4666900_+|histidine-kinase	gnl|CDD|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	5.39491e-23
CP029188.1|AWI30927.1|4658777_4661621_+|peptidase-M4-family-protein	gnl|CDD|341060	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease. This peptidase M4 family includes several endopeptidases such as thermolysin (EC 3.4.24.27), aureolysin (the extracellular metalloproteinase from Staphylococcus aureus), neutral protease from Bacillus cereus, protealysin, and bacillolysin (EC 3.4.24.28). Typically, the M4 peptidases consist of a presequence (signal sequence), a propeptide sequence, and a peptidase unit. The presequence is cleaved off during export while the propeptide has inhibitory and chaperone functions and facilitates folding. The propeptide remains attached until the peptidase is secreted and can be safely activated. All peptidases in this family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. The active site is found between two sub-domains; the N-terminal domain contains the HEXXH zinc-binding motif while the helical C-terminal domain, which is unique for the family, carries the third zinc ligand. These peptidases are secreted eubacterial endopeptidases from Gram-positive or Gram-negative sources that degrade extracellular proteins and peptides for bacterial nutrition. They are selectively inhibited by Steptomyces metalloproteinase inhibitor (SMPI) as well as by phosphoramidon from Streptomyces tanashiensis. A large number of these enzymes are implicated as key factors in the pathogenesis of various diseases, including gastritis, peptic ulcer, gastric carcinoma, cholera and several types of bacterial infections, and are therefore important drug targets. Some enzymes of the family can function at extremes of temperatures, while some function in organic solvents, thus rendering them novel targets for biotechnological applications. Thermolysin is widely used as a nonspecific protease to obtain fragments for peptide sequencing. It has also been used in production of the artificial sweetener aspartame.	1.38505e-79
CP029188.1|AWI30921.1|4651608_4652700_-|two-component-sensor-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.34132e-49

Protein sequences

>CP029188.1|AWI30923.1|4653523_4654219_-|spermidine-synthase
MDPLSHATGPRTLDRREGPYGEVVLRERRGPDGEIHEIIANGCFLMDTSDGRSERLLMDAAYAALAGRPDPSVLIGGLGVGFSLARAAAEPGWSRIAVAEREQAIIDWHTTGPLRHLSAAALADPRTTVLHTDLVAHLHSTSDTYDALCVDIDNGPDWTVTEGNGGLYAPDGLRACARCLNPGGVLAVWSAQPSRTFEQTLRNAGFSGVRTEEVVVARGVPDVVHLAVRPA
>CP029188.1|AWI30922.1|4652696_4653440_-|DNA-binding-response-regulator
MEQTHTSSNGAAVHPTGSAQRRVLVVEDDTTIVDAISARLRAEGFLVQTAADGPSAVDAAEAWQPDLMVLDVMLPGFDGLEVCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERAALAAVTPRSGILRLGELEIDHAQRRVRVRNEDVHLTPTEFDLLVCLANTPRAVLSREQLLAEVWDWADASGTRTVDSHIKALRRKIGAERIRTVHGVGYALETPAP
>CP029188.1|AWI30921.1|4651608_4652700_-|two-component-sensor-histidine-kinase
MTRRSRPRSRLGAVEISIKTKLGALVVMAVLITTGLALVAFRTGAELRYITVFAMITTLLITQFVAHGLTAPLDEMNTVAKSISHGDFSRRVRGDGRRDELGDLASTINRMADDLEAVDRHRKELVANVSHELRTPIAALRAVLENVVDGVSAADPETMRTALKQTERLSRLVETLLDLSRLDNGVVALKARRFEVWPYLSGVLKEANLAAGQRRLPSGSGNHTRKDVHLHLDVSPPELTAHADAERLHQVVANLIDNAVKHSPPHGRVTVRARRGALAESLDLEVQDEGPGIPESEWHRVFERFNRGSAPSKHGPGSDGGTGLGLAIARWAVELHGGRIGVAESTRGCRIRVTLPGIPSSHG
>CP029188.1|AWI30920.1|4647483_4651317_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit
MSSQSPSNSSTSTDPDGQGKNPAAAFGANEWLVDEIYQQYLQDPNSVDRAWWDFFADYKPGGGATSEAAPTPPAPTNTTAATATQTPGTAQAPAPAAPAAQTPAAPAPAQAAPAQASAPAQAPAKPAAAAKPAAAPAKPAAPAADAGKAADGPEMLPLRGPSAAVAKNMNASLELPTATSVRAVPVKLLFDNRIVINNHLKRARGGKISFTHIIGYAMVQAIKAMPSMNWSYGDKDGKPVLVKPPHVNLGLAIDLVKPNGDRQLVVAAIKKAETMNFFEFWQAYEDIVRRARSNKLTMDDFSGVTVSLTNPGGLGTVHSVPRLMPGQSVIMGVGSMDYPAEFQGTSQDTLNKLGVSKVMTLTSTYDHRVIQGAASGEFLRIVANLLLGEDGFYDDIFEALRIPYEPVRWLKDIDASHDDDVTKAARVFELIHSYRVRGHVMADTDPLEYRQRKHPDLDITEHGLTLWDLEREFAVGGFGGKSMMKLRDILGVLRDSYCRTTGIEFMHIQDPKQRKWIQDRVERPHAKPEREEQLRILRRLNAAEAFETFLQTKYVGQKRFSLEGGESVIPLLDAVIDSAAESRLDEVVIGMAHRGRLNVLANIVGKSYAQIFREFEGNLDPKSMHGSGDVKYHLGAEGTFTGLDGEQITVSLVANPSHLEAVDPVLEGVVRAKQDIINKGGTDFTVLPVALHGDAAFAGQGVVAETLNMSQLRGYRTGGTVHIVINNQVGFTAAPESSRSSMYATDVARMIEAPIFHVNGDDPEACVRVARLAFEFRQTFNKDVVIDLICYRRRGHNEGDNPQFTNPQMVNLIDKKRSVRKLYTESLIGRGDITLEEAEQALQDFQGQLEKVFAEVREATSHPAPAQVPDAQAEFPVSVTTGISQEVVKRIAESQVNVPESITVHPRLLPQLQRRAASVEDGTIDWGMGETLAIGSLLMEGTPVRLAGQDTRRGTFGQRHAVLVDQETNEDHTPLLYLSEDQARYNVYDSLLSEYAAMGFEYGYSLARPESLVMWEAQFGDFVNGAQTVVDEFISSAEQKWGQTSGVTLLLPHGYEGQGPDHSSARPERFLQLCAQNNMTVAMPTLPSNYFHLLRWQVHNPHHKPLIVFTPKSMLRLKAAASKVEEFTTGGFRPVIGDTGVDSGAVNAADVRKVVFCSGKVYYDLEAERQKRGVTDTAIIRLERLYPLPGAELQAEIAKFPNTEKYLWVQEEPANQGAWPFIALNLIDHLDLAVGADIPHGERLRRISRPHSSSPAVGSAKRHQAEQQQLVNEVFEA
>CP029188.1|AWI33142.1|4646545_4647286_+|SAM-dependent-methyltransferase
MEATNLLYRDPALYDVVQSDSTSAGMCQTLIELHQPGARTLVDFGCGTGRDLEMLAKRYECIGVDLQPGLVDYAQQARPGLDVRTGDMRTVRLGKRMDVVTCMGNSLAYAHHNHDVGQVFATFAAHAQPGALLVLCSPVAPITRTEPTTATVDTPTGPATVTIRHTWDLRTQINTMHRHWMLPSGDEARDEIRRRVLFPRELERYAEGAGFEVLDMLDGDGDGDGDGAGAGLTGPTVYTVARRTPR
>CP029188.1|AWI30919.1|4645055_4646519_+|asparagine-synthase
MRLRLADLQEPKWRSEGGRWGNGESWIEPANVSTLVMEVNDDRAPRVRVRVKECRGDEADFVELTMEPGQARLAAGVFGTAPLYLAEKAGELHASWDLTLLRLHLRADRLVPRVVARTLTRQHRYTSETLFEGVYRLTERAAATLTSHGLNIHYPEPAEHVLEPRMLRLGVDPLAALDDLLTDVIRQAPTATGCVGVELSGGADSGNVALAVKAARFPDVYSFGLLVGGSTGRQQRERRRVLVEHCGFRDTATPAMQHPPFCPGGVRSLCKPHDPAGAFYQEAFDVVREQAAARRCEVMFTGSGGDEINAHHSRTQVELPTPEPVPWLGKKAVRALSEANEYLAPIPVLPVPTLMAFGMHNPGFLRAGIWPVSPLAHPRIVRFMEQLPHEYKRGKALFRERIRRAGLPEWVAAPAEPENFLAVLEKGLRSCGLPVLDSMLKESILVDLGYVDGKVLAQARRNADSAPVVPDLLCDVLALEVGLRSLV
>CP029188.1|AWI30918.1|4644379_4644574_+|hypothetical-protein
MTEERGMDGVLRINTYEGADLPPGSSRFSPCLCPQHRSATPEYGAEKLSVAVREANQRSRGERL
>CP029188.1|AWI33141.1|4642856_4643912_-|transcriptional-regulator
MEGVIDLGRLDMDPSRRSVLGAGLFSVAVTIPGWPDVVGRADAVQSGRTARIGMNEVDMVVAMTERVSELDDEFGGRHARPMAASFMVNTVASYLRADAPEDVRKAMLSAASDLLYLTGYMAVDEGLHGLAQRYYVKALELAGAAENHLTYCTTLRGMSVQAVDLRHGAKAMELADAAAAASPKAGPRMLAFLVGQQAHAAAQTGDRTGALRYIRDAEAAMDRAESRGKAFGSYNSSSLNYHVSQVRYELGDKAGAVEAMQQADRLRPSVYQRTRVHRRGLLAERQLELGHLEAACATWHQALDDYPKVQSGRADERVKTMFGLLRPHLKNAAVRDLYDRARTFAPPSQVT
>CP029188.1|AWI30917.1|4642251_4642434_-|hypothetical-protein
MYFTDRGIEELEKRRGEEEITFEWLAEQLRTFVDLNPDFEVPVERLATWLARLDDEDDEE
>CP029188.1|AWI30916.1|4641447_4642221_+|hypothetical-protein
MNATSPGALLLCRAEYGIVRPSIPLLREPFLLAPAGRGWSVLVPEGEPWLSDAEPVDRVLSGWAAALAVATNHPVLALWWDADRAGFTLATGFRRPVGYVWLADGTPAGEDEAMHTFAARLALDPVLDLQALETLIRPEPDTGARTRLVGLVAVLTRTGLALPEGVAPGAEPDGLRAAARTAAVRQGAAARQGHGHTAHAVGHRPPRSGVPALVQIAAGFPLTIWGLARRSAGWTAAGAVLLAHGLLALARDRAPAR
>CP029188.1|AWI30925.1|4654731_4657134_+|endopeptidase-La
MASTPTPLTLPVLPLDDEVVLPGMVVPLDLSDNDVRAAVEAAQAAARAEPGKPRVLLVPRIDGTYAATGVLGTVEQVGRLSDGDPGALIRGHSRVRVGAGTTGPGAALWIHGTLIDEALPDPLPGSVTELVKEYKALATSWLRKRGAWQVVDRVQQIDDVAALADNAGYSPFLSTAQKVELLETSDPAARLRLATEQLREHLAEQDVAESIAKDVQEGVDKQQREFLLRRQLDAVRKELRELHGESDGEESDDYRARVESADLPEKVREAALKEVDKLERAGDQNPEGSWIRTWLDTVLELPWNERTEDAYDIRGAKAVLDAEHAGLDDVKERITEYLAVRKRRSDRGLGVVGGRRGGAVLALVGPPGVGKTSLGESVAHAMGRRFVRVALGGVRDEAEIRGHRRTYVGALPGRIVRAVKEAGTMNPVVLLDEIDKVGSDFRGDPAAALLEVLDPAQNHTFRDHYLEVELDLSDVVFLATANVLEAIPEALLDRMELVRLDGYTEDEKVVIARDHLLPRQLERAGLEPGEVTLEESALRRLAGEYTREAGVRNLERAIARLLRKVAAQHELGRRELPFTVGDGDLRALIGRPHHVPESAQDPAERRTAVPGVATGLAVTGAGGDVLYVEASLADPETGASGLTLTGQLGDVMKESAQIALSFLRSHGAELELPVGDLKDRGVHIHFPAGAVPKDGPSAGITMTTALASLLSGRQARTDVAMTGEVSLTGRVLPIGGVKQKLLAAHRAGITTVVIPKRNEADLDDVPAEVLEKLEVHPVTDVRQVLRIALSPAEVTVPAAA
>CP029188.1|AWI30926.1|4657598_4658627_-|hypothetical-protein
MIEAELPYLGLGATEERVYEALLEERAEGAEELARHLRLRRDDVDAALGRLVEHGLALPPRGSGTLPRPAAPAAAIRSLIHRRQAELHMKSAELERLRMTADQLAGRLTAGAPAAPGSGIEVITGQRAIEERADDLLASAEREVVVLDRPPYVRDRRGYGTFRLPGAGVEGLLDRGVTVRTVLDRDGLAAPERIRTLNALVERGLRARVAPAVPTRLIAVDRRTALLPPGDAADPKASALLVGDALLRHALVPLFETVWDRAAPVGGPPAEPPPAGGALPPEQRELLALLAAGLKDEAIARRLGVHVHTARRRISRLLESLGAETRFQAGARATLRGWLDGD
>CP029188.1|AWI30927.1|4658777_4661621_+|peptidase-M4-family-protein
MRKPRHNQGRPAHGITRGTGAAALLAAAGLLITAVPAQAATPPPAPPVEVVPGEDTATPALVEGLKEPVDAKAAPADAARGHLEARESRYRIAEPRRDLTPVRTLKRGADETVRLQQRHRGVPVLGGQYVVRMEKSGGERVVTGTSGKYFTGLTTGTEATVAEDVAVRRAVSATAARLGGSRLTEADAVREEGEKSQKARSLTGTARGLVVIPRGEGVLARHVTVRGTDPVTGEPVLEEVYVDARSGFPVLRYSGIKSVTGASRAATRPERAGAAPAAAAADEPAVSAAKGSGLRLDGGKVDLELTLDGATGRYGMTDRARMADTTKNTLGTWDASSHDVGDVAGRWPSGIRVFESATAEFGKAATDAGAVDAHWAAGQVYDYFRKQHGRNGLDGRGSSVNSLVGVTLFGGSYVNAFWDGQKMVYGSGDEEFKPLAADLDVVGHEMTHGIVENTANLVYAGQSGALNEAVADYFGNAIDVTASGRSMDDPDAGLIGEDLCRTKGPRDCALRDLDDGATTSKNFLGVTFATDNGGVHLNSTVFSGALWDMRQDLGGELADRIVYKALSEYMTPLDGFTEGRNAVLAAARDLGATAKQRNVVKRSFSAHGIVPGWEDALGADSDRLLGKLNTSGTGVQAGGGWWTASQSNDDGSEPYSVYAGRADGSGHPKLISPNDGRFHVSPATDGKTVVWAAYGATSLDVLSRPLAGGPIKKLYTTTSDISGLRVENGVVVFESYGIFGDRHVGYLRPGDTRPTYADGGSFFLATALPSISQGRIAYAKLYPGETGYRLGVEVLDLGTGTKTLTGQLGEPQSLGQTGINSQHVFWLTDENLADTGQAGVRRADLDGRNVFDIAPEAKPRALHGVDLTVSEDAVTVTSQTPDTQWRNETLSKLWQLTTDGSRLDRVSCNRGEQLSPAAVSGRQVVWLDGTTGFTDLVTRTRPAGLCG
>CP029188.1|AWI33143.1|4661821_4662316_+|MarR-family-transcriptional-regulator
MHGSGTGNDTGPNGGSGADQEFREFLALERELAVFLRRARASSGEMAREVHPGLEPSAYGLLVRLEECGAQRATDLAGYFGVGKATMSRQLRALDELGLVTREPDPADGRAWLVRLTDEGLTRFRAVRKARRERYVRKLAGWDRGEVAELARLLHQLNARSEEG
>CP029188.1|AWI30928.1|4662375_4663191_-|hypothetical-protein
MRFELATVPGTAERPNEDWASLALPASGQGGSLVVLDGVTPPRGGDGCVHGVPWFTSHLGGALLELSGSRRDMPLAEALALSIRRTADAHRDSCDLSHVRTPQATVVAVRWNGESVEHLVLSDSTLLLEAPDGVVHAVLDDRLDRIPREVLRSLSATDALRNRDGGFFTAAADPAVAARAVTGTTPRADVRAVVALTDGASRWTDLFAEGSWADLMELLRKEGPNGLVGRVRALEAADARRGGETRWKTHDDATAVYAELQAPSDPPLPGS
>CP029188.1|AWI30929.1|4663564_4666900_+|histidine-kinase
MQKKRPRGKGSTDGTASSGPAAPQVPPSPAIPSATSDDRAAPVPPAYTEPSAEARAASDPTLLPGGRPVRVRRRLVAGVAAVTLTVAAAGAPAILLASDDLSESQRLVTLAELNRQAVTLAHSLADERDEVTAYIAAGREDQQGDKKDRREISGNRGARVDRQIDEIRGNVPADHADLRRGLGTVNSVRRTALTGKGTALEAYKAYTDIIEGLHALADELAERTPARAAEATRAPAALGLAVEQASATRGLLLAALSVPGPANDGPSFDPVTGLPVEDEGDARTEEARNVLSAAAQQARVRELAALADFDQAAGTAARARLTGTVTGPDVKTAEAYLARLTDQPELSEKDRESSREKLEDSLSARIEQMRGVESALASAQVERLEQLRDDDVTALELRIALLGGCLLVVVGISAAVARTLTRPLAVLRIGAARLAGAPEGEEPIRFTGRNDEFAQVVRSLNTLHGKLVDLAARSRHLDAERGELTSASAEFAARRAELQERTAEVTEQLDKLRRTVGHTFVNLALRTLGLVERQLGVIEGLEEREQDPDRLATLFKLDHMATVMRRHSENLLVLAGAEHGHSHPGPVPLVDVMRAAVSEIERYERVVIQSLPPHAHVAGFAADDLSHLVAELLENATSFSPPDAQVQLSGWLLESGEIMLSVQDEGIGMAPDRLEELNTRLASTERVDDLDPAAGGEGLGLKVAGLLARRHGVRVQLREQKGGGIAAVVVLPQGLLPEGAATASPQAAPVPGAGPAVNLPGSVAEANSNALPGRRVPAGDPLVAAAEKAVQDAGVDGPAPAVPGPRQSPETGTDAGTDTGHDTVTATASGSATGAASGSASGAASGAASGSGTEYGATTSGAGSFAPQPGVEQVGPDAGAAPGRSPFAPGPSDTPAEFGAGATTGEAYGRDGGYGRDGGYGRDGEYGPDGEYGREYGHDREYGREHGPDGEAAGEPAATAPETTLQVRLPHPAPEPEAHGRGVTGAAPGGAHAASDPGPGPDSGPGGADPTGHRAPEPEAAAQPGDPAEIVTDKGLPKRTPKVVAPLGAPKERRGSVDAEELRRRLGGFHQGAKDGRRDVEAEFADPARAHGTEQTSQSEESGDTVEEAHS
>CP029188.1|AWI30930.1|4666896_4667379_+|hypothetical-protein
MTATGTFGLSSEARNLHWLLGNLVEEVPGVRSVAVVSSDGLLLLSSDPAHNTAPSATQRQDGPRGSSADLATIVSGIGSLTIGAAKLMDGGGVKQTMVAMEEGSLFVMSISDGSLLGVHATADCDMSVVAYHMALFVGRAGHVLTPEVRSELRKSLESAK
>CP029188.1|AWI30931.1|4667375_4667789_+|DUF742-domain-containing-protein
MTSAAQPAPRLPVRGDGKRPARVRPYSLTGGRTRFGHVLLVETFVAALEAGDERKELTNGNLTSRVMPEMRAIVELCRRMRTVAEISALLKMPLGVVRVLLSDLADQGMIRVYGTGHGDGRPDRALLERVLSGLRRL
>CP029188.1|AWI30932.1|4667769_4668393_+|ATP-binding-protein
MDSVVSDLPTAAEDENVQPWQNDHTRAPIATKIVVAGGFGVGKTTFVGSVSEITPLQTEALMTQASEETDDLTATPEKQTTTVAMDFGRITLDDDLVLYLFGTPGQQRFWFMWDDLVRGAIGAIVMADTRRLKDCFPALDYFESCGLPYVVAVNHFEGTPSYEADDVREALTVPPHVPVVIMDARQRITVVESLLALVGHALDATPE
>CP029188.1|AWI30933.1|4668457_4669699_+|oxygenase
MRKILIVGAGQSGLQLALGLQAQGYEVTLMSNRTADEIRAGRVMSTQCMFHTALQHERDLQINFWESQAPKIQGLGVSVSGPESQRVVDWVGKLDGYAQSVDQRLKMAGWMETFAQRGGQLVIHGAAVSDLDYFARTYDLVLVSAGKGELVSMFGRDASRSPYSEPQRALAVAYVHGLGPRPEHPEFDAVRCNLVPGVGELFIMPTLTLSGRADILFWEGVPGGPLDVFQGVKDPAEHLSLTLELMEKFTPWEYARATKVELTDANGTLAGRYAPTVRNPVGRLPGGGLVLGVADVVVANDPITGQGSNSASKCAAAYLASIVEHGDRPFDEEWMRSAFDRYWETAQHVTKWTNAMLGVPPEHVLNLIGAAGQLQPVADRFANGFNDPSDFENFFFDPEKTSAYLASVGGTAA

Crispr_ID: CP029188_24

• CRISPR_ID: CP029188_24
• CRISPR_location: 4817776-4817878
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_24

Consensus_repeat	Method
CGGATCGCCTACGAACGCGGTCCGTCCACGGACGC	CRISPRCasFinder

spacers of CP029188_24

>24.1|4817811|33|CP029188|CRISPRCasFinder
GGTCCGTCCACGGACGCGGATCGCCTACGAACG

CRISPR arrays and Neighbor proteins around CP029188_24

CRISPR arrays

The CRISPR arrays of CP029188_24

>merge|CP029188|24|4817776-4817878|CRISPRCasFinder
CGGTCCGCCCACGGACGCGGATCGCCTACGAACGCGGTCCGTCCACGGACGCGGATCGCCTACGAACGCGGTCCGTCCACGGACACGGATCGCCTACGAACGC

>CP029188|24|24|4817776-4817878|CRISPRCasFinder
CGGTCCGCCCACGGACGCGGATCGCCTACGAACGC	GGTCCGTCCACGGACGCGGATCGCCTACGAACG
CGGTCCGTCCACGGACACGGATCGCCTACGAACGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI31035.1|4796854_4798234_+|C4-dicarboxylate-transporter-DctA	unknown	unknown	gnl|CDD|234968
CP029188.1|AWI31043.1|4812363_4814970_+|DUF3417-domain-containing-protein	unknown	unknown	gnl|CDD|340852
CP029188.1|AWI31046.1|4819729_4821292_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31037.1|4799165_4800626_-|1,3-beta-glucanase	unknown	unknown	gnl|CDD|185691
CP029188.1|AWI31048.1|4823399_4825235_-|ABC-transporter	unknown	unknown	gnl|CDD|224055
CP029188.1|AWI31040.1|4805939_4807352_-|maltokinase	unknown	unknown	gnl|CDD|237794
CP029188.1|AWI31045.1|4817901_4819068_-|YncE-family-protein	unknown	unknown	gnl|CDD|225926
CP029188.1|AWI31050.1|4828052_4829306_+|hypothetical-protein	unknown	unknown	gnl|CDD|380079
CP029188.1|AWI31053.1|4831861_4832365_+|hypothetical-protein	unknown	unknown	gnl|CDD|340413
CP029188.1|AWI31049.1|4825436_4827653_-|glycogen-debranching-enzyme-GlgX	unknown	unknown	gnl|CDD|131155
CP029188.1|AWI31042.1|4809349_4811317_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl|CDD|200482
CP029188.1|AWI31036.1|4798682_4799003_+|GYD-domain-protein	unknown	unknown	gnl|CDD|378038
CP029188.1|AWI31044.1|4815148_4817176_-|peptidase-M4	unknown	unknown	gnl|CDD|341060
CP029188.1|AWI31041.1|4807577_4809353_-|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl|CDD|274140
CP029188.1|AWI31051.1|4829479_4830724_+|hypothetical-protein	unknown	unknown	gnl|CDD|380079
CP029188.1|AWI31054.1|4833130_4834303_+|hypothetical-protein	unknown	unknown	gnl|CDD|225926
CP029188.1|AWI31038.1|4801362_4803693_+|helicase	unknown	unknown	gnl|CDD|226482
CP029188.1|AWI31052.1|4830822_4831590_+|enoyl-CoA-hydratase	unknown	unknown	gnl|CDD|180295
CP029188.1|AWI31039.1|4803649_4805860_-|1,4-alpha-glucan-branching-enzyme	unknown	unknown	gnl|CDD|235445
CP029188.1|AWI31047.1|4821420_4823403_-|ABC-transporter	unknown	unknown	gnl|CDD|224055

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI31035.1|4796854_4798234_+|C4-dicarboxylate-transporter-DctA	gnl|CDD|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	8.87269e-161
CP029188.1|AWI31043.1|4812363_4814970_+|DUF3417-domain-containing-protein	gnl|CDD|340852	cd04299, GT35_Glycogen_Phosphorylase-like, proteins similar to glycogen phosphorylase. This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism.	0
CP029188.1|AWI31051.1|4829479_4830724_+|hypothetical-protein	gnl|CDD|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	6.43335e-76
CP029188.1|AWI31037.1|4799165_4800626_-|1,3-beta-glucanase	gnl|CDD|185691	cd02182, GH16_Strep_laminarinase_like, Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.	6.16312e-123
CP029188.1|AWI31048.1|4823399_4825235_-|ABC-transporter	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.96057e-146
CP029188.1|AWI31040.1|4805939_4807352_-|maltokinase	gnl|CDD|237794	PRK14705, PRK14705, glycogen branching enzyme; Provisional.	1.06089e-74
CP029188.1|AWI31045.1|4817901_4819068_-|YncE-family-protein	gnl|CDD|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	2.32246e-51
CP029188.1|AWI31050.1|4828052_4829306_+|hypothetical-protein	gnl|CDD|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	1.12861e-63
CP029188.1|AWI31053.1|4831861_4832365_+|hypothetical-protein	gnl|CDD|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	4.26438e-19
CP029188.1|AWI31049.1|4825436_4827653_-|glycogen-debranching-enzyme-GlgX	gnl|CDD|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP029188.1|AWI31042.1|4809349_4811317_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl|CDD|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
CP029188.1|AWI31036.1|4798682_4799003_+|GYD-domain-protein	gnl|CDD|378038	pfam08734, GYD, GYD domain. This protein is found in a range of bacteria. It is usually less than 100 amino acids in length. The function of the protein is unknown. It may belong to the dimeric alpha/beta barrel superfamily.	6.33476e-27
CP029188.1|AWI31044.1|4815148_4817176_-|peptidase-M4	gnl|CDD|341060	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease. This peptidase M4 family includes several endopeptidases such as thermolysin (EC 3.4.24.27), aureolysin (the extracellular metalloproteinase from Staphylococcus aureus), neutral protease from Bacillus cereus, protealysin, and bacillolysin (EC 3.4.24.28). Typically, the M4 peptidases consist of a presequence (signal sequence), a propeptide sequence, and a peptidase unit. The presequence is cleaved off during export while the propeptide has inhibitory and chaperone functions and facilitates folding. The propeptide remains attached until the peptidase is secreted and can be safely activated. All peptidases in this family bind a single catalytic zinc ion which is tetrahedrally co-ordinated by three amino acid ligands and a water molecule that forms the nucleophile on activation during catalysis. The active site is found between two sub-domains; the N-terminal domain contains the HEXXH zinc-binding motif while the helical C-terminal domain, which is unique for the family, carries the third zinc ligand. These peptidases are secreted eubacterial endopeptidases from Gram-positive or Gram-negative sources that degrade extracellular proteins and peptides for bacterial nutrition. They are selectively inhibited by Steptomyces metalloproteinase inhibitor (SMPI) as well as by phosphoramidon from Streptomyces tanashiensis. A large number of these enzymes are implicated as key factors in the pathogenesis of various diseases, including gastritis, peptic ulcer, gastric carcinoma, cholera and several types of bacterial infections, and are therefore important drug targets. Some enzymes of the family can function at extremes of temperatures, while some function in organic solvents, thus rendering them novel targets for biotechnological applications. Thermolysin is widely used as a nonspecific protease to obtain fragments for peptide sequencing. It has also been used in production of the artificial sweetener aspartame.	1.74388e-105
CP029188.1|AWI31041.1|4807577_4809353_-|maltose-alpha-D-glucosyltransferase	gnl|CDD|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP029188.1|AWI31054.1|4833130_4834303_+|hypothetical-protein	gnl|CDD|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	2.79841e-29
CP029188.1|AWI31038.1|4801362_4803693_+|helicase	gnl|CDD|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	4.52619e-98
CP029188.1|AWI31052.1|4830822_4831590_+|enoyl-CoA-hydratase	gnl|CDD|180295	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.	3.75597e-75
CP029188.1|AWI31039.1|4803649_4805860_-|1,4-alpha-glucan-branching-enzyme	gnl|CDD|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
CP029188.1|AWI31047.1|4821420_4823403_-|ABC-transporter	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.50708e-155

Protein sequences

>CP029188.1|AWI31044.1|4815148_4817176_-|peptidase-M4
MRPTPSRRASATGALLAVAALLAVGVQSGSAAAAPDAAPAAPAQQSASGADPGALPAKLSPAQRAELLREANATKAATAAELGLGAQEKLVVRDVVQDRDGTTHTRYERTYAGLPVLGGDLVVAETKAGRTEFVGKASTAALKNVDTSADVAPATAEQQAVAAARAEGSKDTTADRAPRKVVWMAQGQPTLAYETVVGGLQHDGTPNELHVVTDATTGAKLYEWQAVHQGTGNTMYSGQVTLGTAPSYTLTDTTRGNHKTNNLNRGTSGSGTLFSGTDDVWGDGTPQNLETAGADAHYGAALTWDYFKDVHGRSGIRGDGVGAYSRVHYGNNYINAFWQDSCFCMTYGDGAGNAKPLTSIDVAAHEMTHGITSNTAKLIYSGESGGLNEATSDIFAAAVEFHAANTQDKGDYLVGEKIDINGNGTPLRYMDKPSKDGKSKDAWYSGIGSIDVHYSSGPANHWYYLLSEGSGAKTINGVNYDSPTSDGLPVTGIGRDKASLIWFKALTTKFTSTTNYAAARTGTLAVATELYGANSAEVKAVTDAWAGINVGSRPGGEPGPGKVFENTGDVNIPDLGTASSPVAVTGIAGNAPSNLAVDVDIRHTWRGDLVIDLVAPDGTAYRLKNSSGSDSADNVIATYTVNASSEVANGTWNLRVQDVARYDTGYISNVKLTFP
>CP029188.1|AWI31043.1|4812363_4814970_+|DUF3417-domain-containing-protein
MKAIRRFTVRPVLPEPLAPLSELARNLRWSWHAPTRELFRCADPAGWRAAGGDPVRLLGSVTAGRLAELATDPEFLFRVSESARDLDAYLRGRRWYQEQSGDGVPLPAAVAYFSPEFGITAALPQYSGGLGILAGDHLKAASDLGVPLIGVGLLYRHGYFRQSLSRDGWQQEHYPVLDPDELPLTLLREPDGSPAQVSLGLPGGRTLRARIWQAEVGRVPLLLLDSDVEENAPGERDVTDRLYGGGSEHRLLQEALLGIGGVRAVRAYCRLTGHPEPEVFHTNEGHAGFQGLERIRELLPYGLDFDAALEAVRAGTVFTTHTPVPAGIDRFDRELVARHFGADGELPGIDAERVLRLGTESYPGGEPRVFNMAVMGLRLAQRANGVSTLHGAVSREMFRGLWPGFDTPEVPITSVTNGVHAATWVAPEVLALGEDIAAAPAADLWELRRVLRERLVQEVRERLYASWRRRGAGSTELGWIDGVLDPDVLTVGFARRVPAYKRLTLMLRDRERLTELLLHPRRPVQIVVAGKAHPADDGGKRLVQELVRFADDPRVRHRIVFLPDYGMAMARKLLPGCDVWLNNPLRPLEACGTSGMKAALNGGLNLSVLDGWWDEWYEPDFGWAVPTADGTAAREQDRRDDLEAAALYGLVEERIAPLFYDRGADGVPARWTEMVRRTLTALGPKVLADRMVREYVDRLYAPAARAHRVLALDTGAAGELAAWKARVRAAWPAVSVDHVEAGAEVGAGADDSEGTGAAELGSTLALRVCVTLGLLRPEDVEVQAVAGRVDPDDSIAEPRTFPLKPVASGPDTAGRLVYEGPLALDRTGPFGYTVRVLPAHPLLPHGADLGLVAWPTGATGEGAGVLMR
>CP029188.1|AWI31042.1|4809349_4811317_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MLDVRPLVDCGRRPAKSVVGETFRISATVFREGHDAVAANVVLRDPAGRQGPWTPMRELAPGTDRWGAEVTPDAEGRWTYSVEAWSDPLATWRHHAGIKIPAGIDTALVLDEGAQLYERAAAGVPKKAGREAVLAAADALRDKDRPDRERLEAALAPDALAALERHPLRELVTASPLLPLQVERTRALFGSWYEFFPRSEGARTEGGRPVSGTFRTAAQRLPAIAAMGFDVVYLPPVHPIGSTFRKGPNNALDAGPHDVGVPWAIGSPEGGHDAVHPDLGTLEDFDAFVRCARDLRMEVALDFALQCSPDHPWVTEHPEWFHHRADGSIAYAENPPKKYQDIYPIAFDRDMPGIVAETLRVLRHWMAHGVRIFRVDNPHTKPVAFWEKVIGAVNRTDPDVVFLAEAFTRPAMMHTLAAVGFQQSYTYFTWRTTKQELTGYLTELSGEAAAWMRPNFFVNTPDILHAYLQEGGRPAFEVRAVLAATLSPSWGVYAGYELCENTPLRPGSEEYLDSEKYQLRPRDWESAEREGRSIAPLITALNRIRRRHPALQQLRNLRFHHTDNDSVIAYSKRTGSNTVLVVVNLDPHHTQETTVSFDMPELGLDWHETVPVRDELTGETYHWGRASYVRLEPGVTPAHIAVLRPSPPIGGSPTS
>CP029188.1|AWI31041.1|4807577_4809353_-|maltose-alpha-D-glucosyltransferase
MIVNEPVPDTFEDTPAKDRDPDWFKRAVFYEVLVRTFQDSNGDGIGDLRGLTAKLDYLQWLGVDCLWLPPFFKSPLRDGGYDVADYTSVLPEFGDLADFVEFVDAAHQRGMRVIIDFVMNHTSDQHPWFQESRSNPDGPYGDYYVWADDDKQFQDARIIFVDTETSNWTFDPVRKQYYWHRFFSHQPDLNYENPAVQEEIISALRFWLDLGIDGFRLDAVPYLYQEEGTNCENLPATHSFLKRVRKEIDAHYPDTVLLAEANQWPEDVVDYFGDYPSGGDECHMAFHFPVMPRIFMAVRRESRYPVSEILAKTPQIPKNCQWGIFLRNHDELTLEMVTDEERDYMYAEYAKDPRMRANIGIRRRLAPLLDNDRNQIELFTALLLSLPGSPILYYGDEIGMGDNIWLGDRDAVRTPMQWTPDRNAGFSSCDPGRLYLPTIMDPVYGYQVANVEASMASPSSLLHWTRRMIEIRKQNRAFGLGTFTELPSSNPAVLAYLREAPATGDGSDDLVLCVNNFSRFAQPTELDLRRYNGRHPVELIGGVRFPAIGEWPYLLTLAGHGFYWFRLHREPVATESSARGPGRRARTRKGG
>CP029188.1|AWI31040.1|4805939_4807352_-|maltokinase
MSEAASTRTPVALLPSLSPLLREWLPRQRWFAGKGRPVTGFALVAAVELLPVDAAGPGLLHLLLRVRQPGQALNPRTTAGRAPSARCDPGAGGDCYQLLLGVRTAVPPYLAPALIGRVAEGPLAGRTVYEGLHDPRLAGLLLERLRTPGRFGPLRFDRAAPVPGGLRARVLDAEQSNSSLVYGDSLILKIFRRVYPGINPDLELPLALARAGCDRVPAPVAWFESDTPEPCTLGVLQPFLRGSQDGWQLALKALAGGDDFIGEAQALGRATAEVHTALAAALPTVSLSRSQTEHLATAMNERLDAALRAVPALLPYVRGLRAAFDAIAGATFDGDGRAQRIHGDLHLGQTLRTPDGGWSVIDFEGEPARPLDERRRVQPPVRDIAGILRSFDYAARSHRPWNPAWAARCRAAYCEGYADASGSDPRAEAELLRAYETDKAVYEVVYEARHRPDWLPVPMSAIQRLAGPAG
>CP029188.1|AWI31039.1|4803649_4805860_-|1,4-alpha-glucan-branching-enzyme
MTPRNGVRPAAPLDESDRERLLGGTHHDPHSLLGAHLGRGGVAFRVLRPYAESVTVQAKGLRAELHDDGDGFFSALLPLRRIPEYTLQVAYEEATLELADPYRFLPAIGELDLHLIGEGRHEELWHALGARPMTHQGVTGTRFTVWAPNARGVRVVGDFNHWDGTACAMRSLGSSGVWELFLPGVGEGALYKFEITRPDGSRTLRADPMARRTEVPPATASVVAESHHVWHDEAWMARRGTRPVHEAPFSVYEVHLPSWRPGLTYRQLAEQLPAYVKDLGFTHVELMPVAEHPFGGSWGYQVTGFYAPTARMGTPDDFRHLVDALHRAGIGVIMDWVPAHFPRDDWALAEFDGRPLYEHSDPARAAHPDWGTLEFDYGRKEVRNFLVANAVYWCEEFHIDGLRVDAVASMLYLDYSREHGEWSPNEHGGRENLDAVSFLQEMNATVYRRCPGVVTIAEESTAWDGVTRATHHVGPAGFGGLGFGLKWNMGWMHDSLGYVEHEPVHRRFHHNEMTFSMVYAYSENYVLPISHDEVVHGKRALVSKMPGDWWQQRANHRAYLGFMWAHPGKQLLFMGQEFAQGAEWSEGHGPDWWLLDPSYSAEADHRGVRDLVRDLNRVYAATPALWQRDTVPEGFSWVDGGAADDNVFAFLRIDADGAPLLAVSHFSPVVRHEYRLGVPPSVPAWSEVLNTDAARYGGGDVRNDDPVKPESVTAHGHRTSVQLTLPPLATVWLRPA
>CP029188.1|AWI31038.1|4801362_4803693_+|helicase
MRQEQQFVSLAHERLDQLRGEAEAAVRATMAQVGTGRQARMERDIEVAERSASLAALNAADSGLCFGRVDRRDGVTHHIGRLGLRADDAERTPLLIDWRAPVARPFYLATGYEPMGLRRRRHITTEGRTVTALHDEIMDLRDPTRTGHESHDADEVLLAALNSARTGRMADIVSTIQAEQDRIIRAPQHGVLVVEGGPGTGKTAVALHRAAYLLYAHREQLAKRAVLIVGPNPAFLGYIGEVLPSLGETGVLLSTVGELYPGIHATGTEGPAAAAVKGRPEMAAVLAEAVRDRQRVPEKGEPIVIAHDDGELVLDWDIAVEARHKARETGLPHNLARPYFAFRVIDDLTTQLADRIGEDPYGGPNFLGPDDIAQLGKAVAASAEVHSAIASLWPPLDPQEFLAGYLADPTHLDDADADLIRRSGGPWTPADVPLLDEAAELLGADDSAARAAAEAERSRRIAYAQGVLDVSYASRTYEFEDKEDVDADASEVLAAHDVIDAERMAERQEEADHRSAAERAAADRTWAFGHIIVDEAQELSAMAWRLLMRRCPTRSMTLVGDPAQTGDPARTGDPARTGDPAQADDPGQTGGPAQAGDPAAPSAPGSEGEGVDFWQRILAPYVEDRWRLARLGVNYRTPAEIMDYAAERRRRTDPHFTPPRSIRSTGTAPFERTADLADVADLAAAEVPEEGRLAVIAPRELHGALTGLGGDGPLDLSRPVVLLDPRQAKGLEFDTVLVVAPERMPPNDLYVALTRATQRLGVVTPASATPSPAAAG
>CP029188.1|AWI31037.1|4799165_4800626_-|1,3-beta-glucanase
MTTSRVSRLSRTPIVTVLTAFAVALTGLLALGPASPASGAVPPAPGWNLQWSDDFNGPDRSLPSSADWQIDTGHGYPGGPANWGTGEIQNYTDSPDNLSLDGSGNLRITPLRDGAGNWTSARIETRRADFKAPAGGTLRIEGRIRMPDVTGDAALGYWPAFWALGAPYRGNYWNWPGIGEFDIMENVNGLNSVWGVLHCGVNPGGPCNETSGLGASRTCPGASCQSAFHTYRFEWDRSTSPNTLRWYVDDQLYHTVDQSQMDAGTWADMTEHAGYFILLNVAVGGAFPDALAGKTPTAATVPGHPMLVDYVAVWTRGGGTTPPPTDPPPSGSSQLYLRGGGAAGDAAGSGSSVRLASAGGANHDGTPHSPQVFTSGPVTRAYNGGTTQFDLFVDAGTTVANGQQVRVSYDRTGDGTWDRTETYHYFATDPVPGYEHYTQARGLRSATGTHGDLRNGKVRIEVWNAIGNGASTLGIGNQSFVRIPFG
>CP029188.1|AWI31036.1|4798682_4799003_+|GYD-domain-protein
MPKYLVQASYTAQGTEGLLAEGGTGRREAVEQVLRSCGGSLEWMYFAFGEDDLYCVVDMPDAVSMAATSMKVRATGAVRSRAVLLLSPEDIDAAARKPVEFRAPGA
>CP029188.1|AWI31035.1|4796854_4798234_+|C4-dicarboxylate-transporter-DctA
MATPAAARRDRTHYLYLAVIGAVVLGVIVGFAAPGVAVELKPIGTGFVNLIKMMISPIIFCTIVLGVGSVRKAAKVGAVGGLALGYFLVMSTVALAIGLVVGNLLDPGHGLQLTDAARAAGGKQAEGASAGTVDFLLGVIPTTLVSAFTEGEVLQTLLVALLAGFALQAMGPAGEPILRGVGHIQKLVFRILAMIMWAAPVGAFGAIAAVVGETGVDALKSLAVIMIGFYVTCALFVVVVLGLLLRVVAGVNLFSLLRYLGREFLLILSTSSSESALPRLIAKMEHLGVSKPVVGITVPTGYSFNLDGTAIYLTMGSLFVAEAMGTPLSVGEQISLLIFMIIASKGAAGVTGAGLATLAGGLQSHKPALVDGVGLIVGIDRFMSEARALTNFAGNAVATVLVGTWTKEIDSKRAAEVLAGRLPFDEETFVDDHAPAPAPDSAEAPERRDEDRRQPAVTV
>CP029188.1|AWI31045.1|4817901_4819068_-|YncE-family-protein
MSGPVPRALVASVLAGLLVYVQPAGAHKTARTTGTTAAPPVPAGPSVPAPLPVPGPLSVPGGPGARALAYVAELHSDSVSVVDTRTNRVVGTVPVGDGPDSTAVTPDGSTVYVTDSGADTVSVIDAHRGEVVATVPVGDEPSRVAVSPDGRRVYVANVASDDVSVIDARRNRVVATIEVGDAPLGLAFLPDGSRLYVANAGSDEVWVIGPRRHRVLGTVPVGEGPTTLAVTPDGSRVYVSNLTSGDVSVVDTRRDEVVATVEVGDGPAGVAVLPDGRRVYVANTVGDDVSVIDTCRNEVTATVPVGEEPNGIAVTPDGSRVYVTEFADDEVSVIGTRRDRVVATVEVGAGPTGVAITPAESGRPGWSARRPPFGGEPGGCPRPVGPRP
>CP029188.1|AWI31046.1|4819729_4821292_-|hypothetical-protein
MTDTREVICRPHPSRGLWFVLGLGAAGAILAALRMAYRGGLPDPWACGGLLAASVGFGCLYRATAQVSADVYGLHSRTLLRRWSRPWHDVADLRVYMQYSRDGYDFRRVSVLLRDGRTRRLPLPWSTAVHHRPDFDAQLDALRALHRRYGAPQSSHVPVISYRAAGRGSAGWLVLCVLLLAGAGLAAWSVPSAGAEQRAWRSAVPCTTETAEHGDCLTTLPAVIARTEVGTVKGRSRLYFADGRPLERLSISREGVQGFQPGDSVELTLWRGQVREVTGERHVWREHFTGAGDVAVMAAACALAAGCPGARVLLRLRGRRLPDDEVLPSAGPFTGALAGTALWLLPLCYLHPTTLLTSPVAITWAAAGSLATLGLLAWAWRATRVRTPGEATAGAAEAAQEPSGEVFLAASFLEHTDYNPHGSGTHIVLGDGPPAVTPHPGPDRFAAKRIPVERLTVKDVRRARGGDGDGVPRSWHVAEVDDAGRPVRLAAAPADLIRIIRIIRELGGAGNHRDTVKSGR
>CP029188.1|AWI31047.1|4821420_4823403_-|ABC-transporter
MTSSTATTPQPDGGDASAGAVPESPGAPGPHGTATGGTAAGGTGPDGTAAKAKAPDGTGLDTGGDAFDRDALPAPDGATGALLRSLLAPLRGRVLVAAVLLLLQQAAAQAGPLLVAFAIDRGVPALRDGDHGPLVVVGAGYAVCAVGSGAFQYAFIRASARVNQDALLDLRGRIFRHAQALSLDFHERYTSGRIISRSTTDVESLRELLSEGLQELLAVALSFVYISAMLLWLDLGIGGLAVLSFVPLYLLVQLYRRRAAMVFSERSTAIASVIVKFAETMNGIRPVRAFRRERANDEHFRALNARHARSNGDALLEMARYVVGSRLVANTAVAGIVLWGAYRVTEGTLALGVLAASVLYLRRLYDPIDRLGMFLNSYESAAASLQKIAGLLAQTPSVPEPARPVGLPERAGATGPGREVVFEDVRFAYRTGGEVLPRFHLTIPAGQTVAVVGSTGAGKSTLAKLLARFYDPADGRVLLDGTDLRDLPVPELRRGVVMVTQEAFLFSGTVAENIAIGRPEATRAEIERAAKAIGAHDFICGLPEGYDTDVRKRGGRISAGQRQLVAFARALLADPAVLILDEATSSLDVPGERAVQRAMDTVLRGRTAIVIAHRLSTVEIADRVLVMEGGRIVEDGSPAALVDGAGRFAGLHRAWRESLV
>CP029188.1|AWI31048.1|4823399_4825235_-|ABC-transporter
MSTTAEATRPDRSAVRSLLRLWPYVRPVRARLFTAAVVAIVASCLSLVIPLVLKWMVDGPVADRDVGGVWLGALYLLLLGVAEALLFGFRRWLVARPLAGVEAAMRADLFRHLQRLPVAFHDRWASGQLLSRGTTDLMLVRLFLAFPLTFLLVNGVTIVVGAGIMLAQQWTLGLVLLAPVAPLVFVIARFEARYSSVARTAQDQVGDLTTVVEESVLGIRVIKGFGRHRSQAAAFRALSGRLRGTELVKARLLAGIFGVIMTVPELAIGAALVLGTMQVADGTLSAGTLVAFLSTALALRWPVDAMGFLLAMSQEAATATDRYFDVLDAEVEAETEVEREGKHGAGDGPVEWTGPVESTGLVEGGLRFEGVRFRYPDASEDGEPVLKDIDLHIRPGETMALVGATGSGKTTLTALVPRLYEVTAGRITLDGRDIAAMPREELRTLVSMAFEEPTLFSASVGENVRMGAEHADDEEVVRALDVAQARFVDALPQGCATQVGEQGLSLSGGQRQRLALARAVVGRPRFLVLDDPLSALDVHTEALVEAALRRVLRDTTALVVAHRPSTVLLADRVALLSGGRVAAVGTHHELLRDNAEYAWLMSGAHAEERER
>CP029188.1|AWI31049.1|4825436_4827653_-|glycogen-debranching-enzyme-GlgX
MGPRPAPHGRPRRADGSGPPVWPGAPTPLGARFRVGPDGVAGTNFALWAGGAEAVELCLFGESGAEVRLPLTELTHEIWHGFVPGVGPGQRYGFRVHGRWDPWTGARWNPAKLLLDPYARAVDGEYALPPEVYGHVRDWPHQHVADTVRDDRDSAPYVPKGVVVHDDAPDDEWADDRRPKTPWADSVIYELHVRGFTRLHPGIPPELRGTYAGLAHPAAIGHLVRLGVTAVELLPVHQFAHEDHLLRRGLRNYWGYNSIGYFAPHAGYSASGTAGQQVGEFKRMVRALHQAGIEVVLDVVYNHTAEAGELGPTLSLKGIDNRGYYRLRHGDARRYADYTGCGNTLHVVQPQVLRLITDSLRYWVTEMGVDGFRFDLAAALARSMHDVDMLSPFLAVIAQDPVLRRVKLIAEPWDVGSGGYQVGAFPPLWTEWNDRYRDAVRDFWRGALPDLRDLGYRVSGSSDLYAWGGRRPYASVNFVTAHDGFTLRDLVSYERKHNEANGEGNRDGTDDNRAWNCGAEGETDDPEVNALRWRQVRNLLTTLLLSTGVPMLVAGDEMGRTQGGNNNAYCQDNETGWLDWSLPEQPGPDGLLALTSRLLALRGAHPVLRRRAFFSGRPQTADGLRDLAWFTPHGAEMTEQDWYAPSSTLALFLSGRDIPGRDARGAQVTDDSFLTILHAAGRPTAFRLPGPPWAAEYELVVDTSLEEQSAAPGTVHRGGERMTVPARSVLLLRVRDAG
>CP029188.1|AWI31050.1|4828052_4829306_+|hypothetical-protein
MSNAVRRTRATLAVAALWTVLLAGVAGCTGEAGSAGSAGGPAAEGDKPRAPGDTIRITPADGATAVPADGRLEVALAGGRLERVKVTRIEDAQPAEVPGAVSPNGLTWRPKPGTRLALAAKYSVDAVALDVHGRRSARHTTFTTVVPDHRFIGYFTPENRSTVGVGMIISFDFNRGIRNRAAVERAIRVTSVPPVEVVGHWFDAERLDFRPREYWKPGTKVTVDMALRDVEGAAGVYGVQRKTVRFTVGRSQVSVVDAREQTMEVRRDGRLLTTLPVTTGGKKTRTYNGRMVVSEMHDVTRMNGATVGFTDDDGKSEYDIKDVPHAMRLTTSGTFLHGNYWADPAVFGARNVSHGCIGLRDEKGGSQDSPAGWFFDRTLVGDVVEVVNSPDRTVDPWNGLSGWNMGWEAWKAGSALR
>CP029188.1|AWI31051.1|4829479_4830724_+|hypothetical-protein
MNGQPISGAAVRTGRRRGRTALPALAMGALLLLVSACGGGSDRPAGAGKKAEDAGKVGTAASQAVVTVAPKDGAKAVATSGTLKVTADRGRLTEVAVKDDKGNAVEGRIAAGGASWEPLQHLASATKYRVHAVAEDAEGRESAKDTTFTTLVPKNTFIGHYTPENGSTVGVGMPVSINFTRGITDPEAVEKAIKVTAEPSVPIEGHWFGNDRLDFRPEKYWAAGTKVTVRLNLDGVEGRPGVYGKQAKTVSFTIGRSQVSTVDAKAHTMKVVRDGELIKTIPITAGAPSTTTYNGQMVISEKYKVTRMNGATVGFGGEYDIKDVPHAMRLSTSGTFMHGNYWASRGTFGSANVSHGCVGLRDVRGAYDSGTPAAWMFNNSIIGDVVVVKNSKDKQIAPDNGLNGWNMPWAEWIG
>CP029188.1|AWI31052.1|4830822_4831590_+|enoyl-CoA-hydratase
MTVTLEVSEGVGTIRLDRPPMNALDIATQDRLRELAAEATDRDDVRAVILYGGEKVFAAGADIKEMQVMDHAAMVKRSKALQDSFTAVARIPKPVVAAVTGYALGGGCELALCADYRIAADNARLGQPEILLGLIPGAGGTQRLARLVGPSRAKDLIFTGRHVKADEALAIGLVDRVVPAAEVHGQAHAWAAKLAQGPALALRAAKESVDAGLETDIDTGLAIERNWFAGLFATEDRERGMRSFVEEGPGKAKFL
>CP029188.1|AWI31053.1|4831861_4832365_+|hypothetical-protein
MAGLEGVEQPRARGSATAARWAPAVDDERALEAVELFGDPSEGEVELPSRPESAAVARRLTQCVALRQWALSPQTAEHAILLVSELVGNAVRHTGARVFGLRMLRRRGWIRIEVRDPSRGLPCLMPVRELDTSGRGLFLVDKLSDRWGVDLLPRGKTTWFEMRTDDR
>CP029188.1|AWI31054.1|4833130_4834303_+|hypothetical-protein
MPHPTQRSLPLLAAFLLAALGAGCDAPAEKEGTVAAPPVRAREDGVPVGLPGMPPLLDPRDVYAADRPGRLSPVVRDFPSRVYVPNTGSNTVSVIDPATYKVVETIPVGVQPQHVVPSWDLKTLWVNNNRGHTLTPIDPATGTAGRPVEVHDPYNLYFTPNGRYAVVMASLDRELVFRDPHTMRTLKTTPVTCYGVNHADFSADGRYFIVSCEFSGELLKVDTESMEVVGQQKLPFRGAMPQDVKLSPDGRTFYIADMVADGMWVLDGDRFTTPNLLPTGKGCHGLYVSRDSREMYVTNRGEGSVSVFDFAQDRLTKKWRLPNGGSPDMGGVSADGRVLWLSGRYHSEVYAIDTATGEQLARIPVGSGPHGLAVYPQPGRYSLGHTGVFR

Crispr_ID: CP029188_25

• CRISPR_ID: CP029188_25
• CRISPR_location: 4941438-4941525
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_25

Consensus_repeat	Method
GCCGGGCCCGCGGAGTAGCCGGG	CRISPRCasFinder

spacers of CP029188_25

>25.1|4941461|42|CP029188|CRISPRCasFinder
CCCGCGGAGTAGCCGGGGCCGCGAGGTGCCGGCCTTCGGGGT

CRISPR arrays and Neighbor proteins around CP029188_25

CRISPR arrays

The CRISPR arrays of CP029188_25

>merge|CP029188|25|4941438-4941525|CRISPRCasFinder
GTCGAGCCCGCGGAGTAGCCGGGCCCGCGGAGTAGCCGGGGCCGCGAGGTGCCGGCCTTCGGGGTGCCGGGCCCGCGGAGTGGCCGGG

>CP029188|25|25|4941438-4941525|CRISPRCasFinder
GTCGAGCCCGCGGAGTAGCCGGG	CCCGCGGAGTAGCCGGGGCCGCGAGGTGCCGGCCTTCGGGGT
GCCGGGCCCGCGGAGTGGCCGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI31126.1|4927614_4927854_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31128.1|4929761_4930835_+|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl|CDD|179579
CP029188.1|AWI31140.1|4945771_4947355_+|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl|CDD|227136
CP029188.1|AWI31129.1|4931096_4932185_+|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl|CDD|237363
CP029188.1|AWI31139.1|4943518_4944046_+|N-acetyltransferase	unknown	unknown	gnl|CDD|366181
CP029188.1|AWI31127.1|4928240_4928798_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379240
CP029188.1|AWI31134.1|4937739_4938294_+|transcriptional-regulator	unknown	unknown	gnl|CDD|379409
CP029188.1|AWI31144.1|4949865_4953213_-|ATPase	unknown	unknown	gnl|CDD|377989
CP029188.1|AWI31137.1|4941616_4942942_+|hypothetical-protein	unknown	unknown	gnl|CDD|237660
CP029188.1|AWI31142.1|4948213_4948795_-|ATP-binding-protein	unknown	unknown	gnl|CDD|225138
CP029188.1|AWI31131.1|4933914_4934724_+|urease-subunit-gamma	unknown	unknown	gnl|CDD|183886
CP029188.1|AWI31141.1|4947376_4947580_+|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	gnl|CDD|379386
CP029188.1|AWI31138.1|4942941_4943214_+|DUF1876-domain-containing-protein	unknown	unknown	gnl|CDD|378103
CP029188.1|AWI33158.1|4949441_4949855_-|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl|CDD|214939
CP029188.1|AWI33157.1|4944215_4944830_-|polyisoprenoid-binding-protein	unknown	unknown	gnl|CDD|377274
CP029188.1|AWI31135.1|4938591_4939296_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31130.1|4932273_4933719_-|cytosine-permease	unknown	unknown	gnl|CDD|251109
CP029188.1|AWI31143.1|4948775_4949345_-|DUF742-domain-containing-protein	unknown	unknown	gnl|CDD|283084
CP029188.1|AWI31132.1|4934720_4936433_+|urease-subunit-alpha	unknown	unknown	gnl|CDD|237305
CP029188.1|AWI31133.1|4936484_4937504_+|agmatine-deiminase-family-protein	unknown	unknown	gnl|CDD|377332

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI31134.1|4937739_4938294_+|transcriptional-regulator	gnl|CDD|379409	pfam13977, TetR_C_6, BetI-type transcriptional repressor, C-terminal. This family comprises the C-terminal portion of proteins that belong to the TetR family of transcriptional regulators. The C-terminus represents the regulatory region, and does not include the DNA binding helix-turn-helix domain. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. One of the target proteins is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	1.62232e-19
CP029188.1|AWI33158.1|4949441_4949855_-|roadblock/LC7-domain-containing-protein	gnl|CDD|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	1.94007e-22
CP029188.1|AWI31128.1|4929761_4930835_+|3-isopropylmalate-dehydrogenase	gnl|CDD|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
CP029188.1|AWI31140.1|4945771_4947355_+|acyl-CoA-carboxylase-subunit-beta	gnl|CDD|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
CP029188.1|AWI31129.1|4931096_4932185_+|branched-chain-amino-acid-aminotransferase	gnl|CDD|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
CP029188.1|AWI31139.1|4943518_4944046_+|N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.26183e-06
CP029188.1|AWI31127.1|4928240_4928798_+|GNAT-family-N-acetyltransferase	gnl|CDD|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.03048e-06
CP029188.1|AWI31132.1|4934720_4936433_+|urease-subunit-alpha	gnl|CDD|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
CP029188.1|AWI31137.1|4941616_4942942_+|hypothetical-protein	gnl|CDD|237660	PRK14289, PRK14289, molecular chaperone DnaJ.	0.00873216
CP029188.1|AWI31142.1|4948213_4948795_-|ATP-binding-protein	gnl|CDD|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	8.2707e-46
CP029188.1|AWI31131.1|4933914_4934724_+|urease-subunit-gamma	gnl|CDD|183886	PRK13192, PRK13192, bifunctional urease subunit gamma/beta; Reviewed.	1.31927e-105
CP029188.1|AWI31141.1|4947376_4947580_+|acyl-CoA-carboxylase-subunit-epsilon	gnl|CDD|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	2.93913e-10
CP029188.1|AWI33157.1|4944215_4944830_-|polyisoprenoid-binding-protein	gnl|CDD|377274	pfam04264, YceI, YceI-like domain. E. coli YceI is a base-induced periplasmic protein. The recent structure of a member of this family shows that it binds to poly-isoprenoid. The structure consists of an extended, eight-stranded, antiparallel beta-barrel that resembles the lipocalin fold.	8.74213e-60
CP029188.1|AWI31144.1|4949865_4953213_-|ATPase	gnl|CDD|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	8.06232e-19
CP029188.1|AWI31130.1|4932273_4933719_-|cytosine-permease	gnl|CDD|251109	pfam02133, Transp_cyt_pur, Permease for cytosine/purines, uracil, thiamine, allantoin.	9.98802e-70
CP029188.1|AWI31143.1|4948775_4949345_-|DUF742-domain-containing-protein	gnl|CDD|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	1.90903e-42
CP029188.1|AWI31138.1|4942941_4943214_+|DUF1876-domain-containing-protein	gnl|CDD|378103	pfam08962, DUF1876, Domain of unknown function (DUF1876). This domain is found in a set of hypothetical bacterial proteins.	1.18691e-23
CP029188.1|AWI31133.1|4936484_4937504_+|agmatine-deiminase-family-protein	gnl|CDD|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	8.1588e-158

Protein sequences

>CP029188.1|AWI31135.1|4938591_4939296_-|hypothetical-protein
MLVLTVVLVMSLGGGDDEGGGGAVSPAPTGTRPTDTKAAEAEARAVATRVALTPPDWGPGFARHTPYEVDPAPESLVRENCEFASRPSRIGTLASLLRNVTETATGIAGTSEVKVFADDATAQRYLADARDNIHRCPEQFRGKERWNDVREASPPELPGFDELVAEEGRQVVTAKGAKVNDVYVIATGRDGRNVLSAYVVGKADLDAQIRKYATDTLRKMHQRLGQQPEAAAGR
>CP029188.1|AWI31134.1|4937739_4938294_+|transcriptional-regulator
MLAAAMATIAEHGLDGLTMAGLGREVGMSSGHLLYYFRTKDELLLRTLEWSEGRLGLERSALLSRPATAGERLDAYVDLYVPDGPRDPHWTLWLEVWNRSQNADEDARARQAAIEGAWHRDLVALLAEGVSRGEFRAVDPDRYAARLRALLDGFSVHVAVGIPGTGRDQVLAHVREFIADSLLP
>CP029188.1|AWI31133.1|4936484_4937504_+|agmatine-deiminase-family-protein
MTFRMPPEWAPHERTWMAWPGPNPTFTDDVELAEARAAWAAVARAVRRFEPVTMVVGPGQTEGARALLGADVEIVERELDDAWMRDIGPTFVTDGEGGLAAVDWVFNGWGAQDWARWEHDSKIARHVADLVDVPVLPSTLVNEGGAIHVDGEGTVLLTETVQLGAGRNPGWTREQVEAEIHAKLGTSKAIWLPHGLSGDYGRYGTQGHVDIVAAFARPGVVLVHSQKDPAHPDHERSRTYAEILRGHTDARGRTLEVVEVPAPTVLRDEQGEWVDYSYINHYLCNGGVVLGSFDDPHDEIAAGIFRRLFPERTVTLVDARAVFAGGGGVHCITQQQPKA
>CP029188.1|AWI31132.1|4934720_4936433_+|urease-subunit-alpha
MSGIDPYEYGIDPYEYAGVHGPRAGDRVVLGDSGLVVRVESDSQKAGDEFLAGFGKTARDGLHLKAAAVRDTCDVVISNVLVIDAVQGVRKVSIGIREGRIAGIGRAGNPDTVDGVDVVVGTGTTIVSGEGLIATAGAVDTHVHLLSPRVMEASLASGVTTIIGQEFGPVWGVGVNSPWALRHAFGAFDAWPVNIGFLARGSSSGEAPLVEALAEGGASGFKVHEDMGAHTRALDTALRVAEEYDVQVALHSDGLNECLSVEDTLRVLEGRTIHAFHIEGCGGGHVPNVLRMAGVPNVIGSSTNPTLPFGRDAVAEHYGMIVSVHDLKTDLPGDAAMARDRIRAGTMGAEDVLHDLGAIGITSSDAQGMGRAGETVRRTFAMAGKMKAELGPMEGDGAHDDNARVLRYIAKLTINPAIAHGLSHEIGSIEPGKLADIVLWKPQFFGAKPQLVLKSGFPAYGVTGDPNAATDTCEPLVLGPQFGAHGATPAEISVAFVSQAAAALGDDTMPTRRRRVAVRGTRGIGPRDLLRNSRVGQVAVDAHSGLVTLDGDPLRSDPVESMSLNRLYFL
>CP029188.1|AWI31131.1|4933914_4934724_+|urease-subunit-gamma
MRLTPTERDRLLLFGAAELARARRARGLRLNVPEATALIADTVCEAARDGRRLAEAVEAARSVLGPEDVLPGVADVVTEVHVEAVFDDGSRLAVVSDPIGGGGLGASAPGAVLPGPADPEPEPAVRLTVRNTAAVPVSVTSHFHFFEANPRLDFDRAAAYGMRLCVPAGSSVRFGPGDEVRVGLVPIGGDRVAIGFAGLVDGPLDAPGAKAEALRRAAACGYLGATGGQQRPLGRNTAGQGPAAGQSVRRESAPRPSRQQAPCRPEEDQ
>CP029188.1|AWI31130.1|4932273_4933719_-|cytosine-permease
MPIEQHGVDTIPEAERTSGPRDLVAILLGSNLCLGVIVFGWLPVSFGLGFRGAVTSVVAGTAAGVAVTAPLALVSLRTATNLSTSSGAFFGVRGRLIGSVVGLLLSLGYTALTLWVGGDVMVGTLARALGMPAGDATHAVVYAVLAALTVVGAVFGYRLLLRMSRILAVGMIVLLALGLVAYAPELTTAAPAGTPYLLGSFWPTWALSAVAAGLSGPIAFITLLGDYTRYISPGRHTPRSVLNATCLGLFAGLLIPQLFGTVTALAARASLDYAGPLVEAAPAWYVLPLLLAAAAGSVGNAGLMLYSMGLDLDAIVPRAGRTTATVIVAVAATAFVFLGHFTWDARAAMTSFVLLLTAIGTPWAVITLMGHLHCRGRYDADALQVYNRRARGGAYWFRGGWEPRATAAWALGAAVGLLSVSTPFHEGPLLGLTAGVDCSFVLSGLTGGLVYGAVRPRRDRNGSGGAPATPGRTGRAAAGAS
>CP029188.1|AWI31129.1|4931096_4932185_+|branched-chain-amino-acid-aminotransferase
MTTPSIELKPSSTPLSDAEREAILANPGFGRHFTDHMVTIKWTEGRGWHDAQLTPYAQLSIDPANMTLHYAQEIFEGLKAYRRPDGSVATFRPDANARRFQLSARRLAMPELPVETFIAACDALVQQDKAWVPEHGGEGSLYLRPFMFANEVGLGVRPANEYLFIVIASPAGPYFPGGVKPVSVWLSENYVRAVPGGMGFAKTGGNYAASLLAQAEAAAKGCDQVVWLDALEHRTVEEMGGMNLYFVYGDRIVTPELTGSLLAGITRDSLLTLARDLGYESEEGTITTDQWKRDTENGTLTEVFACGTAAAITPVGTVKSTGGEWTQSNGEPGKVTMELRRALLDIQTGTAEDRHGWMHELG
>CP029188.1|AWI31128.1|4929761_4930835_+|3-isopropylmalate-dehydrogenase
MSRSLNLAVIPGDGIGQEVVAQGLKVLSAVLPQDVKLETREYDLGAKRWHRTGETLPEAELDALRHHDAILLGAIGDPSVPAGVLERGLLLKLRFAFDHYVNLRPSKLFPNTATPLAGRPEIDFVVVREGTEGPYTGNGGSLRTGTPAEVATEVSVNTAYGVERVVRDAFARADARPRRKLTLVHKNNVLVHAGHMWKRIFDKVAEEYPAVTTDYLHVDAATIFFVTQPERFDVIVTDNLFGDILTDLAAAVTGGIGLAASGNINPTGEFPSMFEPVHGSAPDIAGTGKADPTATVLSVALLLRHLGHEAEAVRVEEAVAADLAARGESRPGPEGSAGGSLRTTDEIGDALAVRVAG
>CP029188.1|AWI31127.1|4928240_4928798_+|GNAT-family-N-acetyltransferase
MTDNTTGSLRTAHTYQLSEAALAEIRALLDAAFDGDFDDDDWSHGLGGIHAFIRDRDGLAAHGSVIMRRVVHGRRSYRVGYVEAVAVRADRRRQGLGGRVTGALERVIDGAYELGALSASDDGAELYRSRGWRQWRGRVEVLGPDGVVPLPGEEDSTFLRQPPGRSLPDPAAASLLFDWRDGDVL
>CP029188.1|AWI31126.1|4927614_4927854_+|hypothetical-protein
MPGSTTLGPGHGVDAIEHSDAQRLASVMKELHRLLVAAGPDRITDPQAAALCGGEAHRREEFTDWVDRVAHQLEKAVSR
>CP029188.1|AWI31137.1|4941616_4942942_+|hypothetical-protein
MRTRPFALLSALAGLALLLLLALAPGAGAGTTGVSDAAAALKQDPVYVDPAARAQLSQADEKALEQRIVNADKPVFVAVLPESPQFPADSVLRDLRTATGITGLYGIRLGDRFDAGADGTVMPRNAVRNLVSGVNTPGTDAATQLGNFVDQALPTVRGSAPASWSDGSDPTGAGTGSLIAVGAVLAAGGAGAYAVVRRNRRRRAEEERAALEKLRVVVDEDITAYGEELDRLDFHPSEPGADDAMRADYERALDSYEEAKSAMAAAEHPHDVRVVTGALEEGRYALAVLAARREGAPLPERRAPCFFDPRHGPSTADMSWTPAAGTPREVPVCAADAARLQDGEDPMARTVETESGRRPYWEAGPAYGPWAGGYFGGALLPGLLAGTLLGSALSTPAYGAEYGGGDFDGGDFSGADFSSSDFGGGFGDWGSGGGFDGGGGF
>CP029188.1|AWI31138.1|4942941_4943214_+|DUF1876-domain-containing-protein
MRTKKWNVEIVITESDRTTQAEARLRGQNAELYVGEGTAHRNRADQDIPHIGDELAVARALNGVSHSLLHEVAAEIETRTGESVHRLRAG
>CP029188.1|AWI31139.1|4943518_4944046_+|N-acetyltransferase
MSATGTRRTGHPITLADGTLTRTREAAPADLGPVQALHRRCSAGSRAMRYHAGTPGLSAAGWRLLCDPQRGTTLVTTTAHRTDRVIAMTNVMRTDRWGVGEFAVLIEDAWQRKGLGTALAAHAAEVARRIGLHTLTAAVDAANVPMLQVLENLHAPPGRATGPVIDVEIPLWRGR
>CP029188.1|AWI33157.1|4944215_4944830_-|polyisoprenoid-binding-protein
MGLFNRKTDAATDTATAVRTVDPALAALTGTYTIDPAHSSIGFTVRHAMVTNVRGTFGDHEGTLHLDGEDPSRSTAAIEVGISGIDTGIADRDAHLRSGDFFDVERFPVMSFRSSSAEQLGGEKYRITGDLTIKDVTRPLSIDLEFNGAATDVYGNQRVGFEGGAEILRSDWGLTWNAALEAGGVMVSDKVKLHFDISAIRQAA
>CP029188.1|AWI31140.1|4945771_4947355_+|acyl-CoA-carboxylase-subunit-beta
MTVLDETAGEPTDARGRVAELHALREQARRGPGDRATEAQHAKGKLTARERIELLLDAGSFREVEQLRRHRASGFGLEAKKPYTDGVITGWGTVEGRTVFVYAHDFRIFGGALGEAHATKIHKIMDMAIAAGAPLVSLNDGAGARIQEGVSALAGYGGIFQRNTRASGVIPQISVMLGPCAGGAAYSPALTDFVFMVRETSQMFITGPDVVKAVTGEDITQNGLGGADVHAETSGVAHFAYDDEETCIAEVRYLLSMLPQNNRENPPQVQSEDPADRRSDVLLDLVPADGNRPYDMHKVIEEIVDDGDYLEIHERWARNIICALGRLDGQVVGIVANQPQSLAGVLDIEASEKAARFVQMCDAFNIPIITLLDVPGFLPGVDQEHGGIIRHGAKLLYAYCNATVPRISLILRKAYGGAYIVMDSQSIGADLTYAWPTNEIAVMGAEGAANVIFRRQIADAEDPDAMRARMVKEYKAELMHPYYAAERGLVDDVIDPAETREVLIRSLAMLRTKHADLPSRKHGNPPQ
>CP029188.1|AWI31141.1|4947376_4947580_+|acyl-CoA-carboxylase-subunit-epsilon
MITPAESLLRVEKGHADPEELAAITAVLLARAASQPQAAQAHRGRSTAGWRRLERQSGFRAPHSWQG
>CP029188.1|AWI31142.1|4948213_4948795_-|ATP-binding-protein
MDFASSSGGAARSTTSAKIVVAGGFGVGKTTFVGAVSEINPLRTEAVMTSASAGIDDLTHTGDKTTTTVAMDFGRITLDQDLILYLFGTPGQDRFWFMWDDLVRGAIGAVVLVDTRRLADCFPAVDYFENSGLPFVIALNGFDGHQPYTPDEVREALQIGPDAPIITTDARHRADAKSALITLVEHALMARLR
>CP029188.1|AWI31143.1|4948775_4949345_-|DUF742-domain-containing-protein
MATPPGGHPYEGAQQSPGEHAQNRFNFPSSPSRGGGPQPYQRPQQPYDPSYHQPQGPRSRPAAPRRAPEPGPASGGSNPLVRPYAMTGGRTRPRYQLAIEALVSTTADPARLQGQLPEHQRICRLCFEIKSVAEISALLSIPLGVARILVADLAEAGLVAIHQPGGDETAGGQPDVTLLERVLSGLRKL
>CP029188.1|AWI33158.1|4949441_4949855_-|roadblock/LC7-domain-containing-protein
MSQAAQNLNWLITNFVDNTPGVSHTVVVSADGLLLAMSEGFPRDRADQLAAVASGLTSLTAGASRIFEGGAVNQTVVEMERGFLFIMSISDGSSLAVLAHPDADIGLVGYEMALLVDRAGTVLTPDLRAELQGSLLN
>CP029188.1|AWI31144.1|4949865_4953213_-|ATPase
MRRSKTSSAEQQSRGNFTPPLRAAASPADVQPVEPTTTGGSSSRLSPRNWRVPTRLNAILLIPVLVGLVMGGFQVKGSIDTWNEAQDAEKTALIVRAASEYGQALLNERDLTAEPLLKGDRESRVVTEARAATDAAKRKFDEAVKDMPEKEGLQRRLNLFRAAEPGLERLREVAYTTQFETATKSEGEDPDDPSDDQRGPVATQESYVGVQHYLMEFANELGLGTGNVTSYGRMVYAIQLAKAAESLQRSIGMELLVRPSKKKDIRAGQTIAFTSYAYLEGIALGEYQSGGTQADVDRLKEVMAKKTEEGRKALAAAATAAAASGQTFQPPPKDEDGSVLGGMVGAISTGADPDELAEIGVTKDVWMPAATAKFEGYSEVEKELVDKAVAEAARISDEAKTDAFVNGLIVVVALLTAFILAGMVARQMSRSMRQLRTAAFGIAEQRLPMLVDQLSRTEPGRVDTRVQPIPIDSQDEIGEVARAFDQVHREAVRLAAEQAMLRGNVNAIFTNLSRRNQSLIEGQLTLITDLENNEADPDQLENLFKLDHLATRMRRNGENLLVLAGEEPGRRWNQPVPLVDVLRAASSEVESYERIELTGVPETEIHGQAVTDLVHLLAELLENATTFSSPQTKVRVTATRLPDGRVMIEIHDKGIGLTAEDFADINHKLANPPTVDAAVSQRMGLFVVGRLSDRHGIRVQLRPSGEQAGTTSLVMLPDAITHGGGGEAAVPEDDFTVSQMIPAQESFEAAPMRTAAELGFDDSRYEEQPAEARQLDPVNRSLMREERRAALEAQSGGDRPLFRDESEQGYADQGSYAEEQYEQGYAQEQQSAYDQNGYERNGYEPGGYDRNGYNADGYDANGYENTGEFQVSGGYPEHREQTYAEASYDGSQGSAPEYDNGYAPRPGQGEWADQNAYQGAYEPEYRPDAESAPPAPANGAERVGFERPAPATGSGHQLTDAGLPRRGSSQQGQQAQGQQAQQEAQWPSSTGSAGRTQERAEQQAPQAAQAGGTEAGGSDEWRSKNDERWQRAEKLRKPAAGGVTSSGLPRRVPKANLIEGTAEQTPQSGPQVSRAPEDVRGRLSNLRRGVQQGRSAGTDTNGSGYGPGSTYNQER

Crispr_ID: CP029188_26

• CRISPR_ID: CP029188_26
• CRISPR_location: 5076093-5076174
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_26

Consensus_repeat	Method
CGGTGAACGCGCCGAAGGCGCCCG	CRISPRCasFinder

spacers of CP029188_26

>26.1|5076117|34|CP029188|CRISPRCasFinder
GCCTGGCGTCCCGCGCTTGCGCGGGATGGTCTGG

CRISPR arrays and Neighbor proteins around CP029188_26

CRISPR arrays

The CRISPR arrays of CP029188_26

>merge|CP029188|26|5076093-5076174|CRISPRCasFinder
CGGTGAACGCGCCGAAGGCGCCCGGCCTGGCGTCCCGCGCTTGCGCGGGATGGTCTGGCGGTGAACGCGCCGAAGGCGCCCG

>CP029188|26|26|5076093-5076174|CRISPRCasFinder
CGGTGAACGCGCCGAAGGCGCCCG	GCCTGGCGTCCCGCGCTTGCGCGGGATGGTCTGG
CGGTGAACGCGCCGAAGGCGCCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI33166.1|5070547_5070895_+|alkylmercury-lyase	unknown	unknown	unknown
CP029188.1|AWI31238.1|5066981_5067590_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31245.1|5079276_5080101_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31240.1|5070074_5070473_-|heavy-metal-responsive-transcriptional-regulator	unknown	unknown	gnl|CDD|133398
CP029188.1|AWI31237.1|5066209_5066578_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31244.1|5073693_5074269_-|adenylate-kinase	unknown	unknown	gnl|CDD|181235
CP029188.1|AWI31250.1|5086510_5086711_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31251.1|5087049_5087805_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31243.1|5072995_5073601_-|proteoglycan-4	unknown	unknown	gnl|CDD|378935
CP029188.1|AWI31247.1|5081669_5081972_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI33165.1|5065906_5065984_-|ATPase	unknown	unknown	unknown
CP029188.1|AWI31248.1|5082900_5083779_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI33168.1|5078069_5079185_-|DNA-binding-protein	unknown	unknown	gnl|CDD|225412
CP029188.1|AWI31252.1|5087787_5088441_-|hypothetical-protein	unknown	unknown	gnl|CDD|182725
CP029188.1|AWI31242.1|5072077_5072320_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31246.1|5080482_5081559_-|integrase	unknown	unknown	gnl|CDD|271180
CP029188.1|AWI33167.1|5076731_5077655_-|pentapeptide-repeat-containing-protein	unknown	unknown	gnl|CDD|224276
CP029188.1|AWI31249.1|5084632_5086261_-|hypothetical-protein	unknown	unknown	gnl|CDD|173412
CP029188.1|AWI31241.1|5071572_5071905_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31239.1|5067658_5069032_-|hypothetical-protein	unknown	unknown	gnl|CDD|379262

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI31243.1|5072995_5073601_-|proteoglycan-4	gnl|CDD|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000119087
CP029188.1|AWI33167.1|5076731_5077655_-|pentapeptide-repeat-containing-protein	gnl|CDD|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	4.30942e-16
CP029188.1|AWI33168.1|5078069_5079185_-|DNA-binding-protein	gnl|CDD|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	2.78073e-17
CP029188.1|AWI31252.1|5087787_5088441_-|hypothetical-protein	gnl|CDD|182725	PRK10781, rcsF, Rcs stress response system protein RcsF.	0.00244546
CP029188.1|AWI31244.1|5073693_5074269_-|adenylate-kinase	gnl|CDD|181235	PRK08118, PRK08118, DNA topology modulation protein.	1.02143e-20
CP029188.1|AWI31246.1|5080482_5081559_-|integrase	gnl|CDD|271180	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase). Cre-like recombinases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.	1.12259e-38
CP029188.1|AWI31240.1|5070074_5070473_-|heavy-metal-responsive-transcriptional-regulator	gnl|CDD|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.99756e-50
CP029188.1|AWI31249.1|5084632_5086261_-|hypothetical-protein	gnl|CDD|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	0.000714875
CP029188.1|AWI31239.1|5067658_5069032_-|hypothetical-protein	gnl|CDD|379262	pfam13560, HTH_31, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	7.95739e-08

Protein sequences

>CP029188.1|AWI31244.1|5073693_5074269_-|adenylate-kinase
MRKIALFGPPATGKTTLAKWLSAELGYPHTDLDDLLFTPDGPLPLPEFRRQAGEITRHDAWIVEGNFSKLADVVWHRADVLVWLDFPLPLIVYRIVRRSLYQLTGHDDSPQARRLTWSKAFFHRRSLLRTAIRKYRHNRPRYALQVAETADRGVQVVRLRNPREVRRWMTEMRKGPTESHSHGATRHTAGP
>CP029188.1|AWI31243.1|5072995_5073601_-|proteoglycan-4
MIPRNRPVINEADIAQQAGVPIATWRRRDAPAFRQRVASLFPRSRILIYDLAQARAYLMGKPLPTLPTGEHPDDLLNDEEAAALLGVTASTVRAYATQGYISAGKTLYSLRVWPRGDLEERRNNPPGQGKGGGRPPGTGKGPRKAHAYEGDPRLHTATEALSTAGDTPRHHIAAALAQQHGGSTRTWERVLAQASQTSPPD
>CP029188.1|AWI31242.1|5072077_5072320_+|hypothetical-protein
MGSGRENSRDSRQHVEIALVDGPPGGQGIGQLSSSECELIGELQRGHTLVLGEQALCVARSEGARVEPLAGAIRLGLAGA
>CP029188.1|AWI31241.1|5071572_5071905_-|hypothetical-protein
MAPTANSIQPRPQKLAQNKARAVVNAAELVRHPDHRENHQWILRSGDTVLGYVEPTYGGTSRSGRNGWTGRLGGIAGRRCTTRDAAALDLAERWIRVVTAVPKRTITGDS
>CP029188.1|AWI33166.1|5070547_5070895_+|alkylmercury-lyase
MRVEMLIVPDCPNGPVLKERLELVLAGRTDVELAEHVVEGQAEAERRGMHGSPTLLVDGRDPFAEPDAPATVSCRLYRSADGRIGGAPSMEELRRVLGIPGTGTGGADRAAGRAG
>CP029188.1|AWI31240.1|5070074_5070473_-|heavy-metal-responsive-transcriptional-regulator
MRIGDLAAATGTTTKTLRFYEQAGLLADPPRTSGGYRDYPAHTTTRVAFIRSAQAAGFSLAEIRDVLAIRDGGQPPCTHVTALLARHLADVERRIAELETTRAMLRELTHTASATDPATCTEGDICRILAAD
>CP029188.1|AWI31239.1|5067658_5069032_-|hypothetical-protein
MPGGSCVGPRCRPAESVPYETDSAAPSFVTFPECVDLSSRRVPIRQEVFGMGNTFSPSNCKRCGEELAQQHTGRPGEYCGTKCRQAAHRDRRKAASPDTEQFDAYLRAELVASGNAIQQLLDTLDIPGAAGNIPLRQFLEVQRSIDQLTVAMVGRARQCGEPWETISTLLGMTRETARRKYAPPVVHRALNRTQTHKHTPRTDAPAPNQSGTRRTSADDRSGTPSAGAERPGLPQQTPPCANPQDLASVLSSLQRASGQSLRALGARTGLSPSFLSRLMNGERFPTWRDAAAIARACGADPVILRKVWEDAEARRGREKRPHTLASALRYLHMRAGRPTPWAIATTSGTLSQDHVTGLLEGTAVYDWEHVERLVQVLDGEPSFFRPLWEQTAPTPQAWSPAPARKKTPRPQNQPKPTTRAEELLCAFSEALGKSTPSSTPRRALAAPIQAATHWPGR
>CP029188.1|AWI31238.1|5066981_5067590_+|hypothetical-protein
MDTDWALTDTPSPDTPRWFKGCAIAVLVLLGLTGLGAWGLAEFEKGLDGYGQLDQSGPAGSVADPLGPGATARYEDGLKVTVSRPRPEPDGTYGLTVTYDNGTDETIHPIGESPDAGVSAYSSAPLVVRAGWALDDYSSETTLNWLNSREAAAGLVSPLSPDRKRTVPVRIRPNGEGITVTVEVTPPTASFRETAYFQLTLD
>CP029188.1|AWI31237.1|5066209_5066578_+|hypothetical-protein
MDAAQQMVEWRDNGGMDTLQTLMADLSAVQEDSDPIDLDGLRDSCSTLTANLETARGGTPMPHPATAQRWNLALEHLTASAKACSDGAVSGDQASFDLMASEMDIGIKHMEAVAKHIGELAQ
>CP029188.1|AWI33165.1|5065906_5065984_-|ATPase
MIETGTDSYRLAGTRARAEEPVKAG
>CP029188.1|AWI33167.1|5076731_5077655_-|pentapeptide-repeat-containing-protein
MGSKLSQMSPLARWACVAIAVAGVLVLFTVVLWRLPWWLDHKYLNKNLSAAQGTVVSGLRTVLTALGGGALVAAGLVYTHRTVELSREGHVTDRFSTAISQVASDKPLEQLGGIYALERIMRDSAKDHVTIVEVLASFVREHAPLSDPPTKKERPQHTESVQAALTVLSRRPRDRAEPFIVNLQRTDLRGADLSDAHLPDAWLRGTNLEGAWLEGANFRGAQLLGANLDSAQLRGAHLEGSLLGGADLSKAKGLTVEQLVTAFPTSFTDLPWDLARDPRVRARIDVAEEELHELAGSPPPPHRKLKE
>CP029188.1|AWI33168.1|5078069_5079185_-|DNA-binding-protein
MHELFDPARLAQARSLIGMTKRRLADELGVTPAAVSQYEMGTNRPRPDLLPRLAEILDVPLTYFLAGRPHARLDPSAAHFRSLRSTRAYQRAKAVAFTEQVWELTYALEKRVQLPVVDLPGFAGGEVHPGTDLPSEPASAARALRVAWGLGTGPIAHLVRRLEAHGIVVVTPQRDEDLRSVDAFSTSRLPRPLIVLTPNRTDDVYRHRFSAAHELGHLILHGDTNPGDITQEREADTFAAEFLTPRESILPELPARADLHKLSQLRDGWGVSVHSLLYRCRELGLLSDSSASRAYQRLHGLQGQPGFAPEPLAGYPGEQSALLSQAFALACDHGLTIAELAHELAWSAAQVRRMLGCEEDRPALRLVSSSS
>CP029188.1|AWI31245.1|5079276_5080101_-|hypothetical-protein
MAGEITPSQWAVEQFGDHAAEVIRHVVKGLARGQQTAYEVQVAAQKAGAEDKRAYGSMWATRYGQVVKQFELAELPGYEARKPKGASYSLAVVKGRVLIPFRHADSLKEPISRAKLSTKIPHQVSRDNGVGAAQPPPTLFDSDSETTEPAAHPSVAEAAAAAEAEQLTVIYVAYAANADSDKVLAAWWGTPTSLEDDGAMVWTPESLDMSIAAAEQDSSDSRDDLRDAGISVPREKGFTGGDLPVLGVTHRFEVVKRPSAEQEPTISDIENGDE
>CP029188.1|AWI31246.1|5080482_5081559_-|integrase
MDTSPATADTEPKALVPASRTGGLSPEARAAVEEGIPPETRRGYAGDWHRFTTWCTHTGRRALPASADTVTEYMTHLKREDKSPGTMDRALASIAVAHQAAEQPKPATIGARRVLKGHEAERKRSKDPRRRTRRAAAATPAVLRTMVAAVDTTKASGRRDVAALLLGFSIAARRSELRLLDWADVADVEEGLAVEVWRPKVNHEGPLGVPYGSNPATCPVRALRAWRQCLIDRGRQPTGPLFLRIDRHDRIAHPMRRHGKPIGDPTGRITGEGIGDLITRAAARAHLTAPTDLLPDLPPRWSGHSLRRGFATAAKQAGADLIETGRHGGWADGSASLAAYFEEAGIWDETNPLYGIGL
>CP029188.1|AWI31247.1|5081669_5081972_-|hypothetical-protein
MTTSARVLREQLAAIKHLRDTYAGDDPNHPLLARLDQQIADLESQPGVGKNVAATDEPFRRTLAEQERAARRKEFSLSRAERAAFRDALRIRYAFGGVRE
>CP029188.1|AWI31248.1|5082900_5083779_+|hypothetical-protein
MCDSIGMTPIQNTATKPESGNEIGRDESAGTSDTEGFLSQARTIEMILERSARTNRTVPIRRVFLQLGEGRDTEPGALKSLVSSRQERALDLYLLVAAITGGPGHSVTEWSTTWARTIGIFDQKSGASAVSRAWKALKDLDLITTARGSQRRTTVTKCMEDGSGPYEPPANVGEKYLQLPFEYWEEGLHTKLTLAGKAMFLIALAQRKHKFPLVHARISEWYGLAQKTVASGIDDLVENGILAPAGFEYFDTLAARSGRGSRPLYRLVRPFHQRGLPPTGLEAFPAQTEAGK
>CP029188.1|AWI31249.1|5084632_5086261_-|hypothetical-protein
MSAQSGSAQVTRPSLDREPVAVLRMPEITLTMWYRVAELSYGRGLLPATKFRLARFLSQQELDPATGRVVGQWGTGRTDGGMTLAARYAWQFGVGEDRFWDDLKGLYRHGFAARVVAPAPGRRAVYALVLRTDAIPCDLPDDLAQRLKVWDLPEVEDPHEDTQYGRLTDAAAVLSDEPAVIPVDEGTASELAAAPRWEHPANSPAALAAEAIRRSAMAMGKQSGPQDLRCWAVVDRDRAESLTQRLMTNGKASPLNAKEVSPLSGLFSTGSRGLSWPNKMGQTKTTPSAAPRTASAFLSGDDPHAVADRVIRRAWHAWRAQLGHGKVLLPSGHWDELGHWHSGSAWSDLQRTVRIALRRSTEGELVDLLSSSVAGVDDVGRLAAWRLWRLINARRDTHGHGGRRPTVAQADHVTRWDNVATAVAERARTMAASPAPVDLDDREAALHEQERRREAARLAAEAELAREARRADLTSRWGLDRYAPGPQQDLPRRWTSREPEFVHQEQTAERRRIDMPQVRSTTEETHRAAVERARAEKRHRRS
>CP029188.1|AWI31250.1|5086510_5086711_-|hypothetical-protein
MRATVMLKPGDYVRGLYEELVNDMGISGAEVLREALTELHKREARRKARHSHKTALHDSEELPQTG
>CP029188.1|AWI31251.1|5087049_5087805_+|hypothetical-protein
MVGAIDSLDDFRVVWGLGCGEADYCALQPQLAGPVGGAFLQGEERADLDPVGHFGGSWPMAAEGRLLAGGCDGCGLAVAAGLASLGDGPVGVVLDGSRWRGLCSRCGDEVLLLASLGLGEQLLDSGENRSLLYRNFVGRNGGCLLGAGLAVLLAGFGRAACFGDGAVRGDGDGPGGAVCVDCFSAYGAGWAEDGGELGDRVHGAGAVGECVLGGGGAGDGDGAVLVGGELVERPCRYVGDGHSGLLLLQRQ
>CP029188.1|AWI31252.1|5087787_5088441_-|hypothetical-protein
MTPRRIARALPLVLAAVLAAGCTSSSSSEPAAGAPPAEPKSPAPTGVGPYPEPARPTPAPARSHARIQQPHGGIPSPAGIDQTDAGAVSRGALTALMTYDTITDDSRTEASIRTADAGWCTPAFAAQLRSATTHAGPGATWTSWTQHRAYTTVALTAADEAGRPADTPTTAYRQWIVAITPHGRDGWKGPAEEYTAFVELTRAQAGALWRLSSLSLQ

Crispr_ID: CP029188_27

• CRISPR_ID: CP029188_27
• CRISPR_location: 5218682-5218762
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_27

Consensus_repeat	Method
TGCCCCGGTCCGTGACGGTCCTCCGG	CRISPRCasFinder

spacers of CP029188_27

>27.1|5218708|29|CP029188|CRISPRCasFinder
TCCGTGACCAATGCCCCGGCCCGTGACCG

CRISPR arrays and Neighbor proteins around CP029188_27

CRISPR arrays

The CRISPR arrays of CP029188_27

>merge|CP029188|27|5218682-5218762|CRISPRCasFinder
TGCCCCGGTCCGTGACGGTCCTCCGGTCCGTGACCAATGCCCCGGCCCGTGACCGTGCCCCGGTCCGTGACCGTCCTCCGG

>CP029188|27|27|5218682-5218762|CRISPRCasFinder
TGCCCCGGTCCGTGACGGTCCTCCGG	TCCGTGACCAATGCCCCGGCCCGTGACCG
TGCCCCGGTCCGTGACCGTCCTCCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI31348.1|5241607_5243140_+|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|143448
CP029188.1|AWI31345.1|5236607_5238194_-|PbsX-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366362
CP029188.1|AWI31347.1|5240398_5241562_+|aminotransferase	unknown	unknown	gnl|CDD|223594
CP029188.1|AWI31331.1|5203477_5204305_-|DNA-glycosylase	unknown	unknown	gnl|CDD|223344
CP029188.1|AWI31349.1|5243269_5244679_+|MFS-transporter	unknown	unknown	gnl|CDD|129794
CP029188.1|AWI31334.1|5210663_5211353_+|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl|CDD|224215
CP029188.1|AWI31333.1|5209414_5210248_+|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
CP029188.1|AWI31338.1|5213295_5214645_+|AI-2E-family-transporter	unknown	unknown	gnl|CDD|279875
CP029188.1|AWI31342.1|5222222_5233511_-|non-ribosomal-peptide-synthetase	unknown	unknown	gnl|CDD|237108
CP029188.1|AWI31343.1|5233649_5235017_-|L-lysine-6-transaminase	unknown	unknown	gnl|CDD|236224
CP029188.1|AWI31346.1|5238700_5239645_-|class-A-beta-lactamase	unknown	unknown	gnl|CDD|185339
CP029188.1|AWI31335.1|5211349_5211658_+|branched-chain-amino-acid-transporter-AzlD	unknown	unknown	gnl|CDD|377512
CP029188.1|AWI31341.1|5221168_5222146_-|penicillin-synthase	unknown	unknown	gnl|CDD|226022
CP029188.1|AWI33176.1|5218784_5219999_-|penicillin-binding-protein	unknown	unknown	gnl|CDD|224600
CP029188.1|AWI31340.1|5216914_5218519_-|monooxygenase	unknown	unknown	gnl|CDD|236158
CP029188.1|AWI31336.1|5211842_5212748_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31337.1|5212827_5213022_+|DUF3046-domain-containing-protein	unknown	unknown	gnl|CDD|378612
CP029188.1|AWI31332.1|5204735_5209358_-|ATP-dependent-helicase	unknown	unknown	gnl|CDD|137505
CP029188.1|AWI31339.1|5215009_5216143_+|recombinase-RecA	unknown	unknown	gnl|CDD|236476
CP029188.1|AWI31344.1|5235591_5236332_-|positive-regulator	unknown	unknown	gnl|CDD|276938

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI31348.1|5241607_5243140_+|aldehyde-dehydrogenase-family-protein	gnl|CDD|143448	cd07130, ALDH_F7_AASADH, NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.	0
CP029188.1|AWI31347.1|5240398_5241562_+|aminotransferase	gnl|CDD|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	1.6464e-70
CP029188.1|AWI31331.1|5203477_5204305_-|DNA-glycosylase	gnl|CDD|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	5.71967e-63
CP029188.1|AWI31349.1|5243269_5244679_+|MFS-transporter	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	7.37912e-57
CP029188.1|AWI31334.1|5210663_5211353_+|branched-chain-amino-acid-ABC-transporter-permease	gnl|CDD|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.40088e-28
CP029188.1|AWI31333.1|5209414_5210248_+|AraC-family-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.95741e-24
CP029188.1|AWI31338.1|5213295_5214645_+|AI-2E-family-transporter	gnl|CDD|279875	pfam01594, AI-2E_transport, AI-2E family transporter. This family includes four different proteins from E. coli alone. One of them, YdgG or TqsA, has been shown to mediate transport of the quorum-sensing signal autoinducer 2 (AI-2). It is not clear if TqsA enhances secretion of AI-2 or inhibits AI-2 uptake. By altering the intracellular concentration of AI-2, TqsA affects gene expression in biofilms and biofilm formation. TsqA belongs to the AI-2 exporter (AI-2E) superfamily.	3.94238e-74
CP029188.1|AWI31342.1|5222222_5233511_-|non-ribosomal-peptide-synthetase	gnl|CDD|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP029188.1|AWI31343.1|5233649_5235017_-|L-lysine-6-transaminase	gnl|CDD|236224	PRK08297, PRK08297, L-lysine aminotransferase; Provisional.	0
CP029188.1|AWI31346.1|5238700_5239645_-|class-A-beta-lactamase	gnl|CDD|185339	PRK15442, PRK15442, beta-lactamase TEM; Provisional.	6.56157e-54
CP029188.1|AWI31335.1|5211349_5211658_+|branched-chain-amino-acid-transporter-AzlD	gnl|CDD|377512	pfam05437, AzlD, Branched-chain amino acid transport protein (AzlD). This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD is known to be involved in conferring resistance to 4-azaleucine although its exact role is uncertain.	0.0036676
CP029188.1|AWI31341.1|5221168_5222146_-|penicillin-synthase	gnl|CDD|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	2.56109e-49
CP029188.1|AWI33176.1|5218784_5219999_-|penicillin-binding-protein	gnl|CDD|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	1.08909e-33
CP029188.1|AWI31340.1|5216914_5218519_-|monooxygenase	gnl|CDD|236158	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.	3.06079e-53
CP029188.1|AWI31345.1|5236607_5238194_-|PbsX-family-transcriptional-regulator	gnl|CDD|366362	pfam00905, Transpeptidase, Penicillin binding protein transpeptidase domain. The active site serine is conserved in all members of this family.	5.30849e-47
CP029188.1|AWI31337.1|5212827_5213022_+|DUF3046-domain-containing-protein	gnl|CDD|378612	pfam11248, DUF3046, Protein of unknown function (DUF3046). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.32296e-29
CP029188.1|AWI31332.1|5204735_5209358_-|ATP-dependent-helicase	gnl|CDD|137505	PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional.	0
CP029188.1|AWI31339.1|5215009_5216143_+|recombinase-RecA	gnl|CDD|236476	PRK09354, recA, recombinase A; Provisional.	0
CP029188.1|AWI31344.1|5235591_5236332_-|positive-regulator	gnl|CDD|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	9.06651e-42

Protein sequences

>CP029188.1|AWI31340.1|5216914_5218519_-|monooxygenase
MDPVIVVGAGPVGLVLSLALAAQGVPSVVLDEGEGKDDPRPARTVVLRADTAALAERLGCATIRDEGARWVGWRSLRRKQELRRVEFHGEDLPAPVHIPQHALMRGLRDAVDTTDLVQVAACTRLDALEQDGRGITAHTRGVDTTWWRGSFLVGCDGARSTVRKLLGIRFPGRTAVERHAVAALRTELPWPGEGVLHRLPPWRTVGDEVTARPLPDGVWRLDWLLPARGELVTPDALVSRVRDTLAGWCDGPPQYDLLDTGVHTLHHRLARRWRVDRAFLAGDAAHLLGAVGTQGVDEGVRDADNLAWKLAHAWHHGASDTLLDSYQAERRTAVASRLRAADQSLPILRGTGGLRTYLPGAARGHGTLLTDGHLGLGPLGAPPAYPHSPLTPRHTGALTAVATPVGAPVADVAVTTPEGTTSRLRHRLGRARLLVVLVAPGTGVWDRRHWVTAGVMPRLASTVSELPARAELLVAESYPGASAHTVLLVRPDGHLVAAFGGVHPAELHAAADTVRGGAPVDSGTPSEHATARPD
>CP029188.1|AWI31339.1|5215009_5216143_+|recombinase-RecA
MAGTDREKALDAALAQIERQFGKGAVMRMGERSKEPIEVIPTGSTALDVALGVGGLPRGRVVEIYGPESSGKTTLTLHAVANAQKAGGQVAFVDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLVRSGALDLIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRIDIRRIETLKDGTDAVGNRTRCKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVEHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIEKKIKEKLGVGVSSTEAPAAEPGADTASAAPAEAPAKSVPAPAAKAAKATKTAAAAKG
>CP029188.1|AWI31338.1|5213295_5214645_+|AI-2E-family-transporter
MAANDGTTQDENRPTSLYTEAGRPGDDPGSGSDGAPARATVPAPAAAPDGAGGADGAGGAPAAAAATGRMPRWLPRAMVLALALYGCFQLGSWAFHQLIGLLINVLIAFFLALAIEPAVGRMAARGMRRGIATFLVFIAVLAASVGFVVALGSLLAGQIVEMVEEFPQYLDQVINWINKTFHSELSRVAIQDSLLRSDWLQKYVQNSATGVLDVSATVLGGLFKLLTIFLFSFYFAADGPRLRRALCSVLPPSKQAEVLRAWEIAVDKTGGYLYSRGLMALISGFAHYVLLAMLDVPYAPALAMWVGLVSQFIPTIGTYLAGALPMLIAFTINPWYALWVLGFVLIYQQFENYVLQPKLTARTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYTVTEDPRVHGHRRHGEVVLARVQRALRSKKDGSAADGESGG
>CP029188.1|AWI31337.1|5212827_5213022_+|DUF3046-domain-containing-protein
MRLTIFWERMEEHFGAAYADSFARDHVMTELGGRTVYEALAAGWETKDVWRGVCAAVGIPADRR
>CP029188.1|AWI31336.1|5211842_5212748_-|hypothetical-protein
MAGTPLARAEHFVWLTARVLEQRRFAYHFLGAAAEPVEAALTAYLNEDGGYGHALEPDLRGPASQPLHTAHALRVLDSIGRCGGLRAERICRYLTNAATRDGALPAIHPSQRGYPTAPFFPIVSDPPSELLATGPVVGLLHRNQVWHAWLFRATDFCWAAVEGLRKSHPYEIQAAVAFLDGVPDRSRAEEAAARLGRLVREQRLVVLDPDRSDDYPVAGGYAPGEYHYPHDYARVPGSLARRWFTDEEMDRSLDHLAREQQEDGGWPVRWRRWAPGTALEWRPLVTLEALRTLRAHGRVLH
>CP029188.1|AWI31335.1|5211349_5211658_+|branched-chain-amino-acid-transporter-AzlD
MNVWIAIGVTAAACYLVKLTGLLVPAGVLERPLVQRLAALLPVALLAALTAQQTFGAGDALVLDARAAGLAAAAVALVLRAPFLVVVAAAVVVTAGVRALGG
>CP029188.1|AWI31334.1|5210663_5211353_+|branched-chain-amino-acid-ABC-transporter-permease
MKADSAVVRDALGVGVAVGLSGFAFGVTAAGAGLDVLQICALSLLVFTGASQFALVGALAAGGNPFTAAAGAFFLGTRNAFYGLRLSQLLAVRRVVRPLAAHWVIDETTAVALAQPTRRAARIGFTVTGLTLYVLWNLTTLLGALGAEAIGDTNAWGLDAAGPAVFLALLAPMLRTTTDRVVAGIAAVLGLGLLPVLPAGVPVLVAALAAPAVLWWQGRTAGKRKGAGR
>CP029188.1|AWI31333.1|5209414_5210248_+|AraC-family-transcriptional-regulator
MTEGEWARYWQHERLPGIDLLRARYVRHTFPRHSHEGYVFGTITHGVEDVGLPGGVVHAGPGTVVMINPEVPHSARAGVAEGWVYSTLYPSSRVVAEIAAETTAIRGTPGFAEAEVADRQAALMIREVHRAAEEGNALAADSVLRIMVARLLRNHGSSLPARDPLTAGARDAERARAVLEERMADPPTLHALAVELGTSPFALLRAFRDRYGMPPHTWLTDARVRRARRLLDVGEAPAQAAAAVGFTDQPHLNRHFTRIVGVPPGAYRRGRGVGGPG
>CP029188.1|AWI31332.1|5204735_5209358_-|ATP-dependent-helicase
MAGSALDTFAPATRGWFTGAFSAPTAAQEGAWRAIGRGSDVLVVAPTGSGKTLAAFLAALDGLTSAPPPADVRKRCRVLYVSPLKALAVDVERNLRSPLTGIRQEAVRLGLPEPEVRVGIRSGDTPAAERRALATRPPDILITTPESLFLMLTSATRESLSGVETVIVDEVHAVAGTKRGAHLALSLERLDELLPRPARRIGLSATVRPVDEVARYLSPGRRAEIVQPPSGKEFDLSVVVPVEDMGELGGSPASEPDGPGEKPSIWPQVEERIADLVQAHRSTIVFANSRRLAERLCNRLNEIAYERAVGEPLPDGAPPAEVMAQSGAAQGAPPLLARAHHGSVSKEQRALVEEDLKAGRLPAVVATSSLELGIDMGAVDLVVQVESPPSVASGLQRVGRAGHQVGAVSTGVVFPKYRGDLVQAAVVTERMRTGSIESLRIPANPLDVLAQQLVAMVALDTWQFDDLLAVVRRAAPFASLPESAFTAVLDMLAGRYPSDAFAELRPRVVWDRVAGTVTGRPGAQRLAVTSGGTIPDRGLFGVFLAGADPKKGGGRVGELDEEMVYESRVGDVFTLGTTSWRIEDITRDRVLVSPAPGVPGRLPFWKGDQLGRPLELGRAVGAFLREIGSLPEEDARLRLMTAGLDGWAAGNVLSYLDEQRRACGHVPDDRTIVIERFRDELGDWRVVVHSPFGAQVHAPWALALGARLSERYGMDAQVMHADDGIVLRLPDADLMGLDLLDQDPVHLDTSYDGDQAPVGAGDTLFDKGEIGQIVTDQVGGSALFASRFRECAARALLLPRRNPGKRTPLWQQRQRAAQLLQVAGEFGSFPIVLEAVRECLQDVFDVPGLEELMGDIESRTVRLVEVTTPEPSPFARSLLFGYVAQFLYEGDSPLAERRAAALSLDSRLLAELLGQAELRELLDADVLSELERELQWLTDDRRIKDVEGVADLLRVLGPLTAEELAERGADPRWPEELAGTRRAIRVRIAGAEHWAAAEDAGRLRDALGTALPVGVPEAFTEPVKDPLGDLLARFARTHGPFTSSQAAARFGLGAAVTDGALQRLAAAGRVVQGEFHPSGIGQEWCDAAVLRRLRRRSLAALREELEPVPPAALATFLPQWQHLGGSSLRGIDGLARAVEQLQGAPVPASALEKLILPSRVAGYAPGMLDELTTTGEVVWAGAGALPGKDGWVSLYHADAAPLLLPQPHPLELTALHESVLSALSGGYGLFFRQIADQVRATTHPEAGDPQLADALWDLAWSGRLTNDTLAPLRSLLGSGRTAGSTAHRARRTVPRGRYGSLTAAARTASRNGPPTVSGRWSLLPAQEPDPTHRAHALARTLLDRHGVVTRGAVAAEGVEGGFSATYRVLSAFEDSGQARRGYVVEGLGAAQFAMDGAVDRLRAAAGARERADGHTAPRAVVLAAADPANAYGAALSWPEPPDGASHKPGRKAGSLVVLVDGELTLYLERGGKTLLSWPTEPDDPALRAAAEALAEAGGAGMLGTITVERINGSAALTSPLSRPLEEAGFHATPRGLRIRA
>CP029188.1|AWI31331.1|5203477_5204305_-|DNA-glycosylase
MPEGDTVWLTAQKLRTALAGRTLTLSDLRVPRFATADLTGREVLDVTARGKHLLTRIEGGLTLHSHLRMDGSWRVFAVGERWHGGPNHQIRAVLGNAERIAVGYRLPVLELLRTQDEDEAVGHLGPDLLGPDWDPDTAVRNLLADPRRPIGEALLDQRNLAGIGNVYKSELAFLARVTPWLPIGDLPPGVPERLVATARRLLEINKNTFDRRTTPGGSIGGGDQRRSPLRPGEQRLFVYGRRGHPCLRCGTAIRRAGRDDRVSYWCPGCQSGPTV
>CP029188.1|AWI33176.1|5218784_5219999_-|penicillin-binding-protein
MPLAALLGIGLPAVQVLRPLPEPTLTVDQVPSSVTVDGAAFSVPWPGKGQGAVKVVGSGTTATFGEERPVPTASVAKIMTAYVILREHPLGKGEEGPWIEVDAQTVEDGRARDESRIVGLRVGQTFSERDMLKMLMIPSGNNIARLLARWDTGSRDEAAFVGKMNAAARALGMENTTYTDPSGLDERTVSTAVDQLKLAEEVMKSDAFRTIVAMPSADIPGLGRIHNNNDRLLLAGLNVTGVKTGSNTPAGGTLTWAAHKTVAGEARLILGTMMDQRAAGPDPNGADSLILVQDNSRKVIEAVREALTSATVVHKGQVVGRVDDRLGGRTALVAAEDLTAVGFAGQKLSVGFSDGGRSVPRTAKAGTVVGELTVGTGDGARRVPVALRTDLTAPTAGERLLRLG
>CP029188.1|AWI31341.1|5221168_5222146_-|penicillin-synthase
MPSADVPTIDISPLFGDDPNEKARVAEAINKACRGSGFFYASNHGIDVKLLQDVVNEFHRNMTEQEKYDLAINAYNRNNPHVRNGYYMAVKGRKAVESFCYLNPSFDDDHPMIKSGTPMHEVNIWPDEDRHPRFRPFCEQYYRDMLRLSTVLMRGFALALGKPEDFFDASLAEADTLSSVSLIRYPYLEDYPPVKTGPDGTKLSFEDHLDVSMITVLYQTQVQNLQVETVDGWQDLPTSEENFLVNCGTHMAHITHDYFPAPNHRVKFVNAERLSLPFFLNGGHNSVIEPFVPEGAAGQAKNEPVSYGDYLQHGLSALIVKNGQT
>CP029188.1|AWI31342.1|5222222_5233511_-|non-ribosomal-peptide-synthetase
MMSARYPTTAADWTARIDGVSSERCDLEMLLKDEWRNRIAVRDDDSGVRATRHRELRVGGRDYAALKESLRRHDGVSVGAYALATLHSVMRAYGHGNQTVAALVDASGSGDPQRADVLPVVVDHSEQAGITCLDAAGQLDEALRRKDSYLDPGEILGRGLFDALLVLTDREVALGDLPPAPLALVVRDAEADGCLEWTLAYAGDLFEDRTIDGVLDVVREVFGQFVGRPADRVFDIELVSAEQREQLRRWNDTDGDFPQGKRLNQLFEDAARRSPDREAVVFRDTSLTYREVDERSNQVAHWLLEDTGVRPQELIGLYLDKSDLGVVATLGIWKAGAAYVPIDPAYPADRVRFIVGDTGLSGIVTNRHHAARLREMLGPQHASVRVIEIETVLARQETAGSAVREAPRLSLDSRDLAYVTYTSGTTGVPKGVPKYHDSVVNSITDLSERYDMRRPGEERVALFASYVFEPHLRQTLIALVNEQTLVIVPDDVRLDPDGFPAYVREHSVTYLNATGSVLHHFDLSGCTSLRKLLLVGEELTAAGLRQLRERYSGLVINEYAFTEAAFVTAVKEFAPGVTERRDRSIGRPVRNVTWYVLSQDLKQLPVGAIGELYIGGCGVAPGYLNRDDLTAERFMPNPFQTDRDRARGLNSRIYRTGDLARVLPSGEVEFLGRSDFQLKLNGVRVEPGEIEAQATEYPGVRKCVVVAREGAGGATDRHLVGYYVTEPSAEVTEDDLLEFLEQRLIRIMVPARMVRLDGIPVNVNGKADWRALPEVDPARPAGKPVPAGSGGSRPRAAAGGVVDELREIWSTVLGVPAARIGDDDDFFRLGGQSISCILLIARLRQRLGALIGVEDVFALRTLGELAHHLDRQRLEGPQPAARPAPGHLPAEGDTTRLLANGLQQGLLYHALKRGHGDDAYVMQSVHRYHRPIRAELMREAWQHARRKYPALRLRFEWAEQPLQIIDNDDKPFDWRFVDLSGTADPAEQDARIKELQERDRTEPYDPAAGRLFRVYLVKQREDLFSLIFSCHHIILDGWSLPVLHDDVHRSYLRLLRGAEVEPAVDGAYTASQRDWEARRNDHVDHWTREVERIDERGDFGGLVREDIRYQVALSDYDHVREHRTRKLCLGAERTAALKDVCAAHGVTLHSVLQFVWHKALYAIGGGNTTVVGTIVSGRNPHIEGIENSVGLFINTLPLIVNHDEQAGMSVGSALSGIQAAVNTMNSKSAVELGRLETAGMKRRLFDTLLVLENYPRLLDEAEEREHRELLRFEKAYDADKVDYPLAVVAREEGDELTVTLWYAGELFEDATVDALLDTTRTLFDQVAQDATRRVDALGLVPPAVLERFDAWNRTRTAFPAARTLHAVFEDQAATWPDEIAVVYRERRLTYRELNERANQLAHYLRSVTTLRPNDLVGLVLDKNELMITAILAVWKTGAAYVPIDPGYPDDRITFMLQDTQARLVLTNTTHHERLSGLTTPDNTPVLDIDHLPQGYRSTDNPTTQTGSTDLAYAIYTSGTTGKPKAVLVEHRGVVNLQVSLAKLFGLDKRRGDEALLSFSNYVFDHFVEQMTDALLNGQKLVVLDDTMRTDAERLYRYIDDEKVTYLSGTPSVLSLYDYSTTKSLTRIDAIGEDFTEPVFNKIRGMFQGTIINGYGPTEISITSHKRLYAPGERRATKSIGHPVANTTCYVLNKSMQRVPVGGMGELYIGGVGVTRGYLNRDELTADRFLDNPFQTPQERAAGENARIYRTGDLVRWLPNGELECLGRTDLQVKIRGQRVELGEVEAALSSYPGVTRSLVIAREHRAAGLAAAQKYLVGFYVSDSEPDEQDVKQWMREKLPEAVVPSRVIRITDIPVTPSGKLDVQRLPETDFGADDSTEYAAPSNDVEVRLCGIWSTVLGIAPDRVGVHDDFFALGGDSLRAMVLAQAITTAFGRGLGVATVLRHTTLGAQADHIRDMAAQPDDDRAEPAAGGAAAGAGNPPVSLAQERLLFIDEFEGGTSAYNIPFALRVGASGDAPTRDAVTAALRTLVRRHPALRTLLRTDEDGVRRQHTLSPDDATAVFDVAVHTVDGTAELDERLVERSGHVFRLHEELPLRADLFDLGTARGGLYLSIVLHHSCFDGWSWDVFRRELAALLGGVPETELGAVHGSYADFAVWQRQYLTGGRLSELTGFWTGALAGFETVRLPLDHPRPARFDYRGREFDFAVDEPTTRALRDLARSAGVSLYSVLLGAWCVMLQTYTGQHDLVVGTPSANRGRPEFDRTIGFFANLLALRVRVESDATLMDYVRAVGRDVVAAQVHGELPFEQLVKELELEKDPSRHPVLQINFTLQNVTDRTRQSSAADGQPELTEYRPDGGGWTPTKFDLSATLSETPGGLAGNLTFAASLFDDTSARGFVSVFQHVLSEFARLSPLAGRTRLAEVSRVDETGRAALLAAGAGDEDASARPAGPARTLHAVFEEQAATWPDEIAVVYREKRLTYRELNERANQLAHYLRSVTTLRPNDLVGLVLDKNELMITAILAVWKTGAAYVPIDPGYPDDRITFMLQDTQARLVLTNTTHHERLSGLTTPDNTPVLDIDHLPQGYRSTDNPTTQTGSTDLAYAIYTSGTTGKPKAVLVEHRAVDSFRKEVGGRYFGGPDTSREGVLFLANYVFDFSVEQLALSVLAGHRLIVPPPSPAHDDDFYAYANRTGLTYMSGTPTQIQQFDLSKLTDLRCLLVAGEAFHERHFDKIRREYSGPIVNAYGTTETAVYNTGRRFEPGEPYRNGFGEPLGNTRLYVLGDAMQLLPPGAVGELYMAGECVADGYLNRPELTRERFLDNPFRSEAERRAGRYAVLYRTGDVVRRTVQGEIEYVGRNDEQVKINGLRVELGEVEAVLAACPGVRECAVVAAADERRPDVTRLVGYYVADGDPAGGEDAGAGTDEFADEGADEDRIFAALRAKLMPGMVPSLLVRLDRPLPMTVNGKLDTKALPRVGLPANRAAYAAPRNRTEARLCQLWSGPLPGGGTVGIDDDFFRSGGDSISALHLAGQVQREVGRKIGVKDVFDFPTVRRFADHVLAGPERSRTATGEDGEEPEQGRLTGDCPLLPIQEWFFAKPLADRGWWNHNFAITTPPLDVARLRTALGRLVAHHDAFGLRYRGFGGDGDGDGTRITQTYGDDRPDLVLHELDVRGLRDEEVSRQLAEWQSGFDLEHGPTACAAYLHGAPDGSARVWFALHHLIVDSVSWHILAQDLEILYHGGELEEKTSSYRQWARALGRYTPGEDERRLWAEITEGMASAAPDGLSAQPGATSHREEFALGASDTRSLLTESQWAYDTDMNDLLLTATGLALRSVTGRARNYLTVEGHGRERFDGAPDVRDTVGWFTTMYPLAVEADQSDLGRSILATKESIRRVPHHGVGYGALFGRYGSERAPLPSVSFNYLGRLPDEDRWTPDGSAGWRLDSAMSGSNVSDRNGGADQFVLDVTMRCAGGRLLTVVDSRLDRATTRRFTDELRTWLERLVAHTSSGAAGRTGHTPAVPHAAAEEVFEPYILVDEENTEHTLFVFPPGEGGAESYLSNIAQQLPGHRLVLFNNVHLHSAMESFEALAEYYLGHIRNLRPSGPYSFLGWSFGGVLALEVSLQLARAGQKIDDLFLIDPYFDVRQASAAIGLPGTEDILDPINYHYAPDRADLEQLGASVGNLVMFKAGELNEIVRDDQQRRLFEFYRTSPYNGLDRLLPAESIELHLLRGATHHSWVRNGRLVRGICERISASSSNDRVM
>CP029188.1|AWI31343.1|5233649_5235017_-|L-lysine-6-transaminase
MGEQEIRPDLAPSETASLQARDVHRALESHVLVDGYDLVFDLSASSGTWLVDAITGNRYLDLFSFFSSAPLGINPSCVSDDPEFMRELAAAAVNKPSNPDIYSVPYARFVETFARVLGDPRLPHLFFVDGGALAVENALKVAFDWKAQKLGLDERAADGLQVLHLERSFHGRSGYTMSLTNTEPAKTGRFPKFAWPRIPSPALRHPLGEHADANRQAEGRALEAAETAFRAADGMIACFIAEPIQGEGGDNHLSAEFLQEMQRLCHEYDALFVLDEVQSGCGITGTAWAYEQFDLQPDVVAFGKKTQVCGVMGGGRVDEVPDNVFTVSSRISSTWGGNLADMVRATRILETIERTGLLDTVVHRGKYLRDGLEALATGHPRSLTNARGRGLMCAIDLPDTGRRDEVLARMYRDHRVIALPCGERSLRFRPPLTISENEIDQALEALARAVEPLAP
>CP029188.1|AWI31344.1|5235591_5236332_-|positive-regulator
MRDTVPTPIRGQRQRRFLASLALRPGQVVSKETIIEDSWDGEPPLTVSGQLQTSAWMVRTALSDAGLPRDVLGSHERGYELRTPPESVDLFAFREKVRAARELHARGEHKEAAERLDSALALWNGPAIADVTSSRLRLRAETLQEERTAAFELRALVDVGLGRYGDAIAQLSELVCRDPLREDLCVSLMKAYYAEGRQADAIQVFHRAKNILRDQVGISPGERMTRVMQAILRQDEKALHNSAGVN
>CP029188.1|AWI31345.1|5236607_5238194_-|PbsX-family-transcriptional-regulator
MVVSAVAALAVTGGVGYWAYTALFGDDGEDPRVAAATAELERFLSAWEAGDARRAGLLTDTPGNAESLITSVMTNLEPSRTDIGAGRGERKEGGEVEVPFTVRMALPGAGDYAWRSRAKLVEQGDVWKVEFHSGLVHPAVVPGQTLALKSRERAAVLDANGDELRAASLVGAVDPKTGKGVSGLQARYDRRLMGGSGPSKSVVVVDRRSGQVVKQLTAAEEPPGQPVRTTVEPEVQEAAAEALDGVAKNAAIVAVEPSSGHILAAANTPAGMNRALAGRYPPGSTFKVVTAAALLKQGMKPSDRGECPKFAYVNGQRFENQDQFVLPAEATFRDNFAHSCNTFFVNARNRLSGSTLHETAEAFGIGGDWDVGATTYDGSVPVSTSDNDKAAAAIGQARVQASPLVMASVAATVKEGAFKQPLLVPDAVKNRFEPHARLDEGVVRALRSMMRATVTDGAGRALRGISGEPHAKTGTAEFGTATPPPTHAWMIGYQGDRDLAWSVLLEDGGSGGSDAGPIAARFLRNLAR
>CP029188.1|AWI31346.1|5238700_5239645_-|class-A-beta-lactamase
MQYVRARRAVAAVLTVVALVPLAACGGDGSPATSAPPGSASPVATTPGAGPTATSAVREFAELEDRFEARLGVYAVDTGTGREVAHNEDERFAYASTFKVLAAGAVLREHSLSGLDQVITYSADDLVPHSPVTAKRVGTGMSLAELCDAAVRLGDNTAANLLLDELGGPRGLDAALEEIGDDVTRMERRETQLNEWSPGSLSDTSTPRALARDLRAYVLEDALGKGERAQLTEWLRTSATGSELIKAGVPKDWMVGHRAGAGSSYGVRNDIAVVWPPDSAPIVMAIMSNGLRRDADHDDRLIAEAASVVADTLG
>CP029188.1|AWI31347.1|5240398_5241562_+|aminotransferase
MMLDPTAVNLNTGSGGPLPRRVFERVTGLRGRLADAPMDFLLRGVPPLLWKARERLAGFLGGDPRRLVLTTNVTGAVNLVASSLDIAGPGEILLTDHEYAPMRWCWERVARRLGLELKTFRLPAMPSDAGEVVDAAVAAMTPRTRLLFFSHVVSSTGLVLPAEELCEEARRRGVVTVVDGAHAPAFLDLKLSGIPCDYYVGSGHKWLLAPTGVGFLHFGEGLGESLQPMQVSWAYQTPEGSGHPDEPDQFGSTPRLRRLECEGTRDICPWLAVPESIDFQAELGHDGIRRRMRELADHARRQLGDGFGMEPATPEPAALSGGMVAFRLPEGTKAAELRRGLWERFRIETAVAERPDRSLIRVSAHFYTTEAEIDFLAEALRELTGVR
>CP029188.1|AWI31348.1|5241607_5243140_+|aldehyde-dehydrogenase-family-protein
MTAVSSTDHIRTRAEDALARCGVELTAVKGDSLSARTPITGQELFGLRAGTPADVDRAVEAAHAAFLVWRTVPAPVRGALVKRFGELLTEHKESLADLVTVEAGKIRSEALGEVQEMIDICDFAVGLSRQLYGRTMPSERPGHRLMETWHPLGVVGVISAFNFPVAVWAWNTAVALVCGDTVVWKPSELTPLTALACTALLDRAIADTGAPAGLSQVVLGTADSGTRLVDSPLVPLVSATGSTRMGRAVGPRVAARFGRTILELGGNNAAVLTPSADLDLAVNAVVFAAAGTAGQRCTTLRRLIVHADVADAVVERLVAAYQRLPIGDPFPETTLVGPLVNAEAQARMRESLDRAVEEGGILCTGGERQLTEEAPDAGYVRPAIVRMPAQTAVVREETFAPILYVLTYRDLDEAIRLNNEVPQGLSAGIFTGDQGEAERFMAADGADCGIVNVNIGTSGAEIGGAFGGEKETGGGRESGSDAWRSYMRRATNTVNYSGRVALAQGVDFSQ
>CP029188.1|AWI31349.1|5243269_5244679_+|MFS-transporter
MAQFIVLFDVSVITVALPSMQEDLGFDPANLQWVVTGYALAFAGLLLLGGRLGDVYGHRRVFLGGLSVFVVAGVIGGLATTPAVLIAARAVKGAGASVLAPLALTMVTTTFPEGHRRTRALAVWTAVSLAGGASGNLFGGILTEYLSWRTVLLANVPIGVPVLLFAARRLARRDGPRRSGRLDVPGALLATVALALITLGITQARTHHWTDPATALPVAGGSVALAAFVVFEQRFARQPLVPPSLFGLPGVGWGNLAMLLAGAGFHIPVWYFLTLTMQEVLHYSAAQTGLGFLPHTVVMLLVGLFATPRLMRYVQARTLISAGALVAAAGFLWQSGVTADSGYLDGILGPAVVISLGAGLVSTPLTTAVTSGVGSADAGAASGLVNTTRQFGGAFGLAVLLTATANDSADTPAAIVDGFGHAFQGMAAIMLALAALATLLPAQLRPARRGLRPGGGPSQVGADHGRSAT

Crispr_ID: CP029188_28

• CRISPR_ID: CP029188_28
• CRISPR_location: 6144281-6144344
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_28

Consensus_repeat	Method
CGAGGAATGCCCCCGCACGAGGA	CRISPRCasFinder

spacers of CP029188_28

>28.1|6144304|18|CP029188|CRISPRCasFinder
GTCCCCCCGCCCCCGCAG

CRISPR arrays and Neighbor proteins around CP029188_28

CRISPR arrays

The CRISPR arrays of CP029188_28

>merge|CP029188|28|6144281-6144344|CRISPRCasFinder
CGAGGAATGCCCCCGCACGAGGAGTCCCCCCGCCCCCGCAGCGAGGAAAGCGCCCGCACGAGGA

>CP029188|28|28|6144281-6144344|CRISPRCasFinder
CGAGGAATGCCCCCGCACGAGGA	GTCCCCCCGCCCCCGCAG
CGAGGAAAGCGCCCGCACGAGGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI32000.1|6147069_6147849_-|N-formylglutamate-amidohydrolase	unknown	unknown	gnl|CDD|377442
CP029188.1|AWI31995.1|6142877_6144071_+|hemin-transporter	unknown	unknown	gnl|CDD|237337
CP029188.1|AWI31996.1|6144376_6144805_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32004.1|6151555_6152116_+|ATP-binding-protein	unknown	unknown	gnl|CDD|225138
CP029188.1|AWI32003.1|6151173_6151539_+|hypothetical-protein	unknown	unknown	gnl|CDD|283084
CP029188.1|AWI31988.1|6131156_6133304_+|PAS-sensor-protein	unknown	unknown	gnl|CDD|369272
CP029188.1|AWI32005.1|6152594_6153377_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI31991.1|6135911_6138812_-|peptide-synthetase	unknown	unknown	gnl|CDD|274093
CP029188.1|AWI31994.1|6142334_6142775_+|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl|CDD|236820
CP029188.1|AWI31998.1|6146224_6146428_+|hypothetical-protein	unknown	unknown	gnl|CDD|379129
CP029188.1|AWI32001.1|6148121_6150773_+|hypothetical-protein	unknown	unknown	gnl|CDD|377989
CP029188.1|AWI32002.1|6150769_6151174_+|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl|CDD|214939
CP029188.1|AWI31992.1|6139576_6140803_+|hypothetical-protein	unknown	unknown	gnl|CDD|225193
CP029188.1|AWI31993.1|6140996_6142163_+|AI-2E-family-transporter	unknown	unknown	gnl|CDD|223701
CP029188.1|AWI31987.1|6129855_6130758_-|B/F/G-family-RNA-polymerase-sigma-70-factor	unknown	unknown	gnl|CDD|274373
CP029188.1|AWI31999.1|6146434_6146782_-|glyoxalase	unknown	unknown	gnl|CDD|319903
CP029188.1|AWI31986.1|6128732_6129752_+|hypothetical-protein	unknown	unknown	gnl|CDD|223407
CP029188.1|AWI31990.1|6134451_6135708_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
CP029188.1|AWI31989.1|6133411_6134065_-|hypothetical-protein	unknown	unknown	gnl|CDD|378566
CP029188.1|AWI31997.1|6145007_6146180_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI32000.1|6147069_6147849_-|N-formylglutamate-amidohydrolase	gnl|CDD|377442	pfam05013, FGase, N-formylglutamate amidohydrolase. Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilisation in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate.	1.16853e-42
CP029188.1|AWI31995.1|6142877_6144071_+|hemin-transporter	gnl|CDD|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	1.88723e-134
CP029188.1|AWI32004.1|6151555_6152116_+|ATP-binding-protein	gnl|CDD|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	1.48991e-43
CP029188.1|AWI32003.1|6151173_6151539_+|hypothetical-protein	gnl|CDD|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	6.99587e-12
CP029188.1|AWI31988.1|6131156_6133304_+|PAS-sensor-protein	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	2.25836e-49
CP029188.1|AWI31991.1|6135911_6138812_-|peptide-synthetase	gnl|CDD|274093	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.	0
CP029188.1|AWI31994.1|6142334_6142775_+|Rrf2-family-transcriptional-regulator	gnl|CDD|236820	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR.	2.40748e-25
CP029188.1|AWI31998.1|6146224_6146428_+|hypothetical-protein	gnl|CDD|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.54099e-06
CP029188.1|AWI32001.1|6148121_6150773_+|hypothetical-protein	gnl|CDD|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	4.22934e-22
CP029188.1|AWI32002.1|6150769_6151174_+|roadblock/LC7-domain-containing-protein	gnl|CDD|214939	smart00960, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	1.89668e-15
CP029188.1|AWI31992.1|6139576_6140803_+|hypothetical-protein	gnl|CDD|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.20738e-09
CP029188.1|AWI31993.1|6140996_6142163_+|AI-2E-family-transporter	gnl|CDD|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.32231e-54
CP029188.1|AWI31987.1|6129855_6130758_-|B/F/G-family-RNA-polymerase-sigma-70-factor	gnl|CDD|274373	TIGR02980, SigBFG, RNA polymerase sigma-70 factor, sigma-B/F/G subfamily. This group of similar sigma-70 factors includes clades found in Bacilli (including the sporulation factors SigF:TIGR02885 and SigG:TIGR02850 as well as SigB:TIGR02941), and the high GC gram positive bacteria (Actinobacteria) where a variable number of them are found depending on the lineage.	8.54991e-97
CP029188.1|AWI31999.1|6146434_6146782_-|glyoxalase	gnl|CDD|319903	cd07238, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	4.26719e-46
CP029188.1|AWI31986.1|6128732_6129752_+|hypothetical-protein	gnl|CDD|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	1.10255e-63
CP029188.1|AWI31990.1|6134451_6135708_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.51215e-86
CP029188.1|AWI31989.1|6133411_6134065_-|hypothetical-protein	gnl|CDD|378566	pfam11139, SfLAP, Sap, sulfolipid-1-addressing protein. SAP is a transmembrane transport protein with six predicted transmembrane helices, with a hydrophilic domain between helices 3 and 4. This hyrodphobic region is highly variable among identified Gap-like (GPL, peptidoglycolipid, addressing protein) proteins and may be involved in substrate recognition. SAP also belongs to the LysE protein superfamily (pfam01810), whose members have been implicated in small molecule transport in bacteria. Other Gap proteins export metabolites across the cell membrane so it is possible that Sap specifically may be involved in transport of sulfolipid-1 across the membrane.	5.11272e-25

Protein sequences

>CP029188.1|AWI31995.1|6142877_6144071_+|hemin-transporter
MLSEKATPVVRATLPIVGAALGDITELFYRKLFDAHPELLRDLFNRGNQANGEQRKALAGSIAAFAGMLLEQPGTRPDAMLARIAHKHASLGVTSGQYKIVHRHLFAAIAEVLGDAVTDEVAAAWDEVYWLMANALIAVETRLYQEAGATEGEVWRTMEIAGRRQETPDVVSFLLRPRDGRPAGTFRAGQYVGVRAELADGARQIRQYSLSTAPGRPEWRISVKRVRGATGPEGEVSSWLHEHAHPGDVLTVSVPFGDLVLPEGGEPLLLASAGIGNTPVLALLDHLVSTGSDRTVVTVHADRTPADHAHREEHLALARALPGGRLHLWYASPGHDAPDVPAGRADLDGLDLPEDLTAYLCGPLPFMRTVRSDLLRRGIPAERIHYEVFGPDLWLGR
>CP029188.1|AWI31994.1|6142334_6142775_+|Rrf2-family-transcriptional-regulator
MRLTKFTDLALRSVMRLAVCADDEVLTTREVAEAMGVRQTHAAKAITRLQHLGVVEARRGRGGGLVVTDFGRRASVGWLVRELEGEEEVVSCDDPPCPLRGACRLRSALRDAQAAFHATLDPLSVADLVASPTGPVLVALGGPPPR
>CP029188.1|AWI31993.1|6140996_6142163_+|AI-2E-family-transporter
MPTRLSSTRTRAALGTSARVSAELLLVFVMVAVALWLLGRMWPVVWPLIVGLLLTTLTWPLTRRLRGRGWPPALAASAVTVLFLLVASGVVALIAVPVASQSGELSDGVVQGIQQVREWAAGPPLNIGDDQITGAFGTAVERIQDSAGSMVTAVVTGVGTVVNGVVTAVLALFLMFFFLKDGPRFLPWLSRQLPGSLAVHVPAVAARGWNTLGAFVRSQAFVGLIDAVFIGIGLWILGVPLVLPLAVLTFVSAFVPIVGALFAGLVAVLIALVSNGLADALIVLAIIVVVQQLEGNVFQPMIQGRGLGLHAAVILLAVTLGGSLAGIVGSLLAVPAAAVIAVVWNYLREQLGDPEPEQEPERAPEPAPESVPETEAGEPSTGAAAAVS
>CP029188.1|AWI31992.1|6139576_6140803_+|hypothetical-protein
MGHVFASAVPSATTADGTAHRAPSTGRLVGLDLARGVAIMGMFAAHVGPDPSVGGPVGWLMEVARGRSSALFALLAGFTLVILMGRPRPHTGRAGRQAAGRVLIRAALLMALGYALVLLDTDVDVILSFYGLLFVLALPLYRLSARTLALIALSTALVLPQLLYLLRAAIDGGELADAVVGLDPLARVTGSDGFLELFVTGEYPALTWFPFIVAGMAVARLDLSRRDMPPKLAITGAALAVIGYGGSWLALHLVPGALAGVSAATGGGPAASAWWSDAVGEEFASGHPAWLLVASPHSQTTLSIVGNTGVALAVLAGCLLAVRLAGPRARLLAPLAAVGSISLTAYVAHILAIRLLGSVGGEEWPALPVLLGFAVVAMAAAVLWTRCFRRGPLEHLLHGATRPARWIT
>CP029188.1|AWI31991.1|6135911_6138812_-|peptide-synthetase
MTCNSFQRPAPAESDAAVRASTATAGSTETLLAEVLAGVLRTEQVPADSHFFTDLGADSMIMAQFCARVRKRDDLPTVSMKDVYQHPTLQSLAASLAPAAPQPPASPPADGPARQDDTETLLAEVLAGVLRTEQVPADSHFFTDLGADSMIMAQFCARVRKRDDLPTVSMKDVYRYPTMRELASALGSPQAGPQSTAVPGEADASAGATPLTASEPASVRTPGAASGASELPARARTRQYLLCGALQFLFFLGLSFVAAIVLTSGYEWIRGGSGPVGVYVRSALFAAAAFTALSALPVVAKWLLVGRFRPRRLTVWSLGYLRFWCVKTLIRLSPMRLFVGTPLYLLYLRALGAKIGRNVSVFSRTVPVCTDLLTIGEGTVIRKDVLFACYRANDGMIEIGPVALGRDVTVSEQTVLDIGTSMGDGAQLGHASALHSGQAVPAGESWHGSPAQPTTTDFRAVEAAPCGGLRKTLYTAAQLLLLLGVYLPLALGGIGLLFAVLPQLGELLRPELALTSPGFYLDVLIASLVAFFGGLLVGLVTVNAVPRLLRLAIKPGRVYPLFGVHHGLQRALTRMTNVRFFVLLFGDSSAIVHYLRCLGYDLGRVQQTGSNFGSLVKHDTPYLSRVGTGTMVADGLSVINADFSSTTFRFSPASIGASSFLGNNVVYPARSRIGDNCLLATKVMVPVDGPVREGVGLLGSPSFEIPRTVRRDQRFDHLATGDELRRRLGGKNRHNAFTAALYLLVRWFHFYVVALIAMTAVDLYHAHGVAWVALFSLITLMFTVAYFALVERVVIRVQPLRPLYCSIYDLSFWRHERFWKLTTHRYMQLFNGTPFKNVVWRLLGVRIGRQVFDDGCTLIERSLVSIGDGCTLNTGTVIQCHSQEDGAFKSDQATLGAHVTLGVGAFVHYGTTVGDHARLAADSFLMKGEEVPAREDWGGNPAREGIAVRRVPVCREPADGRSSVLR
>CP029188.1|AWI31990.1|6134451_6135708_+|cytochrome-P450
MGGMNGETLMRRILDHGSRADPYPLYTELRRTPVCRQEDGSYAVSTYHELLALLHDPRLTSTHAEREAADGGQLPPSFLGMDPPEHDRVRSLAMRQFGPPHSPSRIQDMRGELESTVRKLIDAFPEGGEVDLVDAFAYPFPVTVICRLLGVPHEDEPRFRTWADKLVASIDPRPGEDPAIRLREGAETRRELALYLNDLVEKGAHGSGDGAGDGSGDGSGDGMLFRLADDHDAEGGPLSRLELLVTAVLLLIAGHETTVNLITNGMLTLLRRPEQWERLRREPEIAPRLVEELLRFEPPVQIIPQRGALADIEIGDVTIPEGSVVALVLASGNRDPKRFTDPDTFDPDRPDIEHLGFGSGIHSCFGAPLARLEAQIALTELVRRLDNARLLQDPPPYRSSAVLRGPRHLTIGFDRVLA
>CP029188.1|AWI31989.1|6133411_6134065_-|hypothetical-protein
MPVSFGEVVFFAVVIAVSPFTLIPALFMQFTPRPRATSSAFLAGWVIGILVPATACAALASVVHRPEEGPPWVAWARVGLGSLLIAFGLRQWLTRHGRPAPGWMRMLTGAHPARAFRLGLLLSLANPKILLLSAAAGLAIGSGAHATTSGVSALAVFAACAASTVALPVALHVVMGERVLAPLTRVRRWLEGHAAGVMAVVIAAVGVLVVFEGAVRL
>CP029188.1|AWI31988.1|6131156_6133304_+|PAS-sensor-protein
MHRPGPSMAGPAPGPELDAVLAEAVRGTGASVGLVYVLPPGERALEIAVVSGVVPQIAAPWARISLDDPIPVADAVRERRLVWLSSQEDVARRYPRLGVVLPYDFMLAAAPFPHGTRVWGGLVLLWPTWHPPELSPQERGVIDVCCVRGGALLHEAAGRGARLSTGDEPRVLPPPDAPEPEPEEARAALDFARRIPVGCCALDLDGRITFINSAAADLVGAGGAALLGARPWEALLWMNDPLFEDRYRAAVVSRRPTAFTALRPPDRWLAFHLYPDDRGISVQITPLTGDPGREVAEPERLPSVGPGGAGALYHLTHLAAALTETAGVGDVVEAVADQLVPAFGPSGLALLTVEEGRLRVIGHRGYSSEFMDSVDGSPLTAQTPNVHTLTDGVPSFFGSFEELRSAYPGAVRYAERDAWAFLPLIASGRPVGSMVLSYDHARPFPPAERAILTSLAGLIAQALDRARLYDTKHQLAHTLQTALLPRSLPGVPGLDVAARYLPAGHGMEIGGDFYDLIRCDDTTAAATIGDVQGHNIQAAALMGQVRTAVHAHATAGAAPSDVLARTNRLLSDLEPDLFTSCLFARLDLAGHRARMATAGHPPPLILHPDGRTEAVELPPGLLLGIDPHSAYSTVEVPFPPGTLLLLHTDGLVETAGTGIDEATAAVRDCLARAPDRTADEHADALVRHATRAATRSDDVALLLIRHASGTPGQPR
>CP029188.1|AWI31987.1|6129855_6130758_-|B/F/G-family-RNA-polymerase-sigma-70-factor
MTTPTTRLDSASPAGAPDPGRRDCGFAGLPPVGRATEVSPEDARELTLLFLRRLGELEEGTRDHQYVRNTLIEMNLSLVRFVANRFRNRGEGEMEDIVQVGTVGLIKAIDRFDLSREVAFTSFAIPYVQGEIMRYFRDTSWAVHVPRRLQELRVELARAREHLAATLDRDPGVEDLAEHLGRSKDEVVEGMVAAAGYRAGSLDTPNTDSDDEHAALASGRSHPERIGIDDPGMQLVEDIRALAPHMAELDDRERTILELRFGREMTQSRIGAELGISQMHVSRLLAGTLAKLRTRMLADD
>CP029188.1|AWI31986.1|6128732_6129752_+|hypothetical-protein
MEATAFLFVGVIIALLAVVTVLRAVRVVPQARARNVERLGRYHRTLQPGLNVVIPYVDRVYPVIDLREQVVSFRPQPVITEDNLVVEIDTVVYFQVTDPRAAAYEIASYLQAVEQLTVTTLRNVVGSMDLEQTLTSRDTINNQLRGVLDEATGKWGLRVNRVEIKAIDPPQSIKDAMEKQMRAERDKRAAILGAEGQRQAQILTAEGEKQSAVLRAEGNRTAEILKAEGQSRAIDEVFQAVHRNDPDPKLLAYQYLQVLPQLAQGPGSTFWVIPGEVTSALQGVSRAFSEALPPSPATREESSGGAADRKAADDAAQAAEAAAEAVADAVQVDSGTHTR
>CP029188.1|AWI31996.1|6144376_6144805_+|hypothetical-protein
MNTPWAAVAAATAFVWFGMVLAISFIEAPLKFRAPDVTLRIGLGIGRLVFRALNRAEAVLSAVLVVAVAAGGLPAPVVVPAVLVVGLLLVQLLAVRPVLNRRSDRVLTGEDVPRSRAHLVYIACESAKALLLPALGVAALSV
>CP029188.1|AWI31997.1|6145007_6146180_+|hypothetical-protein
MEIAEARQAVSDLRAAQPSFTGPDAARANTLIGNPDALDQGFYGTCGMAAVVRSFLQHDRARFVNLLQAVYAGADFNRIPTGPGVLLQGRLKQRDAKAAQLNTAYIPLFDLDFVLARSLGKLLKIRSPQMYAAQKLFSEEIARLFNVREPFLDAFTLDPEHIPTLNAAKLDTRLSCELRIKGWRLGQVAGFTVDLPTTKIETRTPGDHWVLRFNAGGRERALRVLRTAAGPLQVAVDVHGSESAFRDQGDLGLDSDGLGHLMLHVAAASTATITRIDPLAPQAAVDVVNAQLTGPTPYVYGLVRSFDDWQRAKWEASARTFPNPPSPPAPVWGRVEPEGEHIIAVNGRIEREADFYVLPVWTWKTAFEVRVPAAHLAGYLPILVHGQIGA
>CP029188.1|AWI31998.1|6146224_6146428_+|hypothetical-protein
MARGDLTDRQWARSEPLSTEGRKPGGPRVETRRQMVDGIRWRPHRDAVGDASEGYGPRGRVCDPKVR
>CP029188.1|AWI31999.1|6146434_6146782_-|glyoxalase
MAVRRVMPIIRSEAVPESRAFYGLLGFEEVMNHGWIMTLAAPSTPAAQISVMTGDKSAPVSPDMSIEVDDVDAAYAVMRESGAEIVHPLQDEEWGVRRFFVRDPSGRVVNVLSHR
>CP029188.1|AWI32000.1|6147069_6147849_-|N-formylglutamate-amidohydrolase
MSSFRLVPGAGDSPVVLHVPHSSREIPEPVRRGIELDDAALTIELDHITDAHTAALSAAAADAAALRPWQFVNGLSRLVVDPERFPDGREEMVAAGMGAVYTRTTHRERLRPEDTDPQPLLDRYFHPYARAMTAVVADRLAAAGRAVVIDVHSYPTAPLPYELHGDGPRPPVCLGTDAFHTPPGLLAAAERAFAGFGGTGRDSPFAGTYVPLDFHRRDPRVSALMIEIRRDVYMTEPGGPAGPGLDRLGAALAQLVDSL
>CP029188.1|AWI32001.1|6148121_6150773_+|hypothetical-protein
MSPIQRIGSRGPSAKRRRRTLRLRTLLIWLAVVPIVALGAQSVLAANRLLEQSGHLRADVESGERIGIPLYRLMVAMQSERTLTAARWAGTGVPEDLMRERRAATDQAATAFRRSWEPGTAVSEVADRRLLEVAEGLGELDAYRERTDSGSGNADSTLVFYTGVIGQMIRFYQDELSHTEDGGLIEDTRVVSAMFAASEMVAQEDMIIAQAGPSRTLTPSRFADLVNAVGAQRYLYDTWVVPYLPDAQNDLYAQMVRSGAWQTKTRIESAVLSEQTITDDGVKLPRDVNGWRAAQQQWGPQLTTLNADRSQALLDLADARATDLETDVAWLIAGSIAALLAVAAVVALTTGSVLRRLSRLHHRTVTIAERVLPDVVDRLQSGRPVDTAALPTVRGEKDEVGRVNDAFARVVAVSVDGHTQLAAERQGFGMFAAGIASRTGNLVSRQLSLTEELQDAFGHDEALLAQLMRADQLTVGMRRQIENLLILSGGEIPDPHTEPMRIADLLREAAAEVEDFRRIERQALDEISIEAAVISQVSHLLAELLDNATRFSPPRSKVVIRAELVADGMSVEIEDRGPRVAPATYEEMNGRLHSAPPYAVLAENAHRLGLFVVGHLADGLGATVTLRRSVYGGTSAVVILPRELLVPTRNETGGAPDAPVRGESPADAPVRGEFPADAVHELPPSAEDAGVRSVRAEPALATDGRGEGEVGAEPVRRTDAGLPVRGSHGRTPDRPDGESPGRSAGEPPEPDGEPTALDAVSPGRPYGLVPRQPGGKPPGRPRAALPERAAEPSGDRTAEPPHRRPPPPPARPVRPVGPARDVRPALPERVPQTHMAEQLLGPRRATEAAAVREADTPEEVADAWADYEQGTQTVEDELRQDQR
>CP029188.1|AWI32002.1|6150769_6151174_+|roadblock/LC7-domain-containing-protein
MTTTSNDMIYSVLDNNLSRIADIKGAVLLSNDGIMLSSYLLDRPQGERIAAASSGIASTMKAISGDVDGGRVIRQLVEMEDRYLCIVGCGEGSTLIVVTSRKARLGELGGEAVRTAQALGEWLSTPGRGQAPTS
>CP029188.1|AWI32003.1|6151173_6151539_+|hypothetical-protein
MSEAPRREGGRRTRLYALTDGRTTAPPASLTMDTTVMAAVSADAYDGLPSEWQAVLSLCVPPNGLAVAEIAARMHMRLTPTILLLGELEDRGLVRHRSPLEETETTNVNLLMRIRDNLARI
>CP029188.1|AWI32004.1|6151555_6152116_+|ATP-binding-protein
MAPVKILVAGGFGVGKTTLVETISEIEPLRTEERLTAAGVGVDDLRGIESKSLTTVAMDFGRITLTDAGVVLYLFGTPGQERFWFMWDDLLNGALGAIVLVDTRRLDRSFPAVDFFESRGLPFVVGANCFHGEQLYSPDEIRSALHLRDPDTPVLMLDARMRADVRAALLALLDMLIAKAGTVARV
>CP029188.1|AWI32005.1|6152594_6153377_-|hypothetical-protein
MRTVRVLTAGLLAAAALFTLPFPGVAAADSPSPSASTGDEGAAPTEAGTSFRTATVIRPGQRATAQASTGDYLYWQFPADAGQRATVRATVELPRSTAGRGTRTWRLDVYDGLRRRQACRYGSDTRAVPAGASSVELSCALRTVRAWSEPWANDPLPGAYYVRLTVVTAPAEDLGEPAEAAVEVVTADSGGATAVDGRLAAPLVPASGRDVEPDGGWASGWWSSRILWTACGAVLAALAGIWGHRLTRGGGRPAHVPPGA

Crispr_ID: CP029188_29

• CRISPR_ID: CP029188_29
• CRISPR_location: 6766930-6767074
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of CP029188_29

Consensus_repeat	Method
CGACGCGCCCGCCGGGACGGCGG	CRISPRCasFinder

spacers of CP029188_29

>29.1|6766953|38|CP029188|CRISPRCasFinder
CTCCCGGCGAACGTGTTCGTGATGAAGCCGCGTGACTT
>29.2|6767014|38|CP029188|CRISPRCasFinder
TGCCCGGTGAGCCGCCGGCCGGCGTTGCCGCGTGACCT

CRISPR arrays and Neighbor proteins around CP029188_29

CRISPR arrays

The CRISPR arrays of CP029188_29

>merge|CP029188|29|6766930-6767074|CRISPRCasFinder
CGACGCGCCCGCCGGGACGGCGGCTCCCGGCGAACGTGTTCGTGATGAAGCCGCGTGACTTCGGCGCGCCCGCCGGGACGGCGGTGCCCGGTGAGCCGCCGGCCGGCGTTGCCGCGTGACCTCGACGTGCCCGCCGGGACGGCGG

>CP029188|29|29|6766930-6767074|CRISPRCasFinder
CGACGCGCCCGCCGGGACGGCGG	CTCCCGGCGAACGTGTTCGTGATGAAGCCGCGTGACTT
CGGCGCGCCCGCCGGGACGGCGG	TGCCCGGTGAGCCGCCGGCCGGCGTTGCCGCGTGACCT
CGACGTGCCCGCCGGGACGGCGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI32431.1|6773606_6774626_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|238568
CP029188.1|AWI32423.1|6762915_6764331_-|ATP-binding-protein	unknown	unknown	gnl|CDD|340391
CP029188.1|AWI32419.1|6760193_6761570_-|cytochrome	unknown	unknown	gnl|CDD|225035
CP029188.1|AWI32434.1|6776736_6777135_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32432.1|6774706_6775735_+|iron-ABC-transporter-permease	unknown	unknown	gnl|CDD|163581
CP029188.1|AWI32420.1|6761566_6762169_-|ATP-binding-protein	unknown	unknown	gnl|CDD|225138
CP029188.1|AWI32428.1|6769903_6771349_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240536
CP029188.1|AWI32426.1|6767376_6768741_+|amino-acid-decarboxylase	unknown	unknown	gnl|CDD|143509
CP029188.1|AWI32418.1|6759032_6760193_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
CP029188.1|AWI32424.1|6764631_6765573_+|AraC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197666
CP029188.1|AWI32430.1|6772484_6773468_+|cysteine-synthase	unknown	unknown	gnl|CDD|107204
CP029188.1|AWI32425.1|6765857_6766796_+|haloalkane-dehalogenase	unknown	unknown	gnl|CDD|179147
CP029188.1|AWI32417.1|6757158_6758604_+|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|236219
CP029188.1|AWI32433.1|6775734_6776550_+|histidinol-phosphatase	unknown	unknown	gnl|CDD|224045
CP029188.1|AWI32421.1|6762146_6762473_-|DUF742-domain-containing-protein	unknown	unknown	gnl|CDD|283084
CP029188.1|AWI32427.1|6768926_6769907_+|ornithine-cyclodeaminase	unknown	unknown	gnl|CDD|225280
CP029188.1|AWI33252.1|6756135_6756624_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32422.1|6762505_6762919_-|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl|CDD|367422
CP029188.1|AWI32435.1|6777553_6779077_-|aldehyde-dehydrogenase	unknown	unknown	gnl|CDD|143434
CP029188.1|AWI32429.1|6771345_6772488_+|histidinol-phosphate-transaminase	unknown	unknown	gnl|CDD|179950

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI32431.1|6773606_6774626_+|ABC-transporter-substrate-binding-protein	gnl|CDD|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	2.61825e-65
CP029188.1|AWI32423.1|6762915_6764331_-|ATP-binding-protein	gnl|CDD|340391	cd00075, HATPase, Histidine kinase-like ATPase domain. This superfamily includes the histidine kinase-like ATPase (HATPase) domains of several ATP-binding proteins such as histidine kinase, DNA gyrase B, topoisomerases, heat shock protein 90 (HSP90), phytochrome-like ATPases and DNA mismatch repair proteins. Domains belonging to this superfamily are also referred to as GHKL (gyrase, heat-shock protein 90, histidine kinase, MutL) ATPase domains.	9.25852e-13
CP029188.1|AWI32419.1|6760193_6761570_-|cytochrome	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	2.44626e-41
CP029188.1|AWI32420.1|6761566_6762169_-|ATP-binding-protein	gnl|CDD|225138	COG2229, COG2229, Predicted GTPase [General function prediction only].	9.12223e-35
CP029188.1|AWI32428.1|6769903_6771349_+|MATE-family-efflux-transporter	gnl|CDD|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	4.47403e-119
CP029188.1|AWI32426.1|6767376_6768741_+|amino-acid-decarboxylase	gnl|CDD|143509	cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.	2.5393e-140
CP029188.1|AWI32418.1|6759032_6760193_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.33982e-80
CP029188.1|AWI32424.1|6764631_6765573_+|AraC-family-transcriptional-regulator	gnl|CDD|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.40322e-17
CP029188.1|AWI32430.1|6772484_6773468_+|cysteine-synthase	gnl|CDD|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	2.46811e-105
CP029188.1|AWI32425.1|6765857_6766796_+|haloalkane-dehalogenase	gnl|CDD|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	0
CP029188.1|AWI32417.1|6757158_6758604_+|glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|236219	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed.	0
CP029188.1|AWI32433.1|6775734_6776550_+|histidinol-phosphatase	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.90066e-100
CP029188.1|AWI32421.1|6762146_6762473_-|DUF742-domain-containing-protein	gnl|CDD|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	7.12541e-26
CP029188.1|AWI32427.1|6768926_6769907_+|ornithine-cyclodeaminase	gnl|CDD|225280	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism].	1.05631e-30
CP029188.1|AWI32432.1|6774706_6775735_+|iron-ABC-transporter-permease	gnl|CDD|163581	TIGR03869, transport_system_permease_protein, proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.	2.59462e-76
CP029188.1|AWI32422.1|6762505_6762919_-|roadblock/LC7-domain-containing-protein	gnl|CDD|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	6.65835e-18
CP029188.1|AWI32435.1|6777553_6779077_-|aldehyde-dehydrogenase	gnl|CDD|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
CP029188.1|AWI32429.1|6771345_6772488_+|histidinol-phosphate-transaminase	gnl|CDD|179950	PRK05166, PRK05166, histidinol-phosphate transaminase.	8.44226e-142

Protein sequences

>CP029188.1|AWI32425.1|6765857_6766796_+|haloalkane-dehalogenase
MQILRTPDERFRDLPDYPFEPSYVEVAAGDGSDGTLRAHYVDEGDGGSGETVLLMHGEPSWSYLYRHMIPVLAGAGHRCVAPDLIGFGRSDKPAARSDYTYQRHVDWMREALFDRLDLSRITLVCQDWGGLIGLRLVAEHPDRFARVVVANTFLPTGDEEPGKAFLDWREFSQTAPDLRVGDIVDLGCRSDLSREVKAAYDAPFPDDSFKAGARQFPMLVPVSSDDPAGGPNREAWRVLGRFDKPFLCAFGDEDPITRGLDRIFRERVPGTRGQDHVTVTGGGHFLQEDRGRELAATVNRFIGSGTGPDGGL
>CP029188.1|AWI32424.1|6764631_6765573_+|AraC-family-transcriptional-regulator
MVTHSTAHVEPRERADFWSQQVDSRHTRLDFRYARRDGFRGELTSQRSDDYELIGWRSDRIEYVRTPGLVRQDPAPDYRFLFPVEGELTLRQDGQEARLAPGFGRLMTLDTPFELLHDSMLRGVILSIPARGIDGPLNRKAPLDAALDLTTGLGRVLHGMLLSLHAERNRLDAAQFNAVTDRVVELLCMVAAGDDRPDAPDHLAQVEAAIRRYARDHATEPDLTGASMARALGWSLRQVQLALQRSGTTPRELIREERLRVVRDRLQRPEYTHMTISELACALGFSSASALSTAFRRRFGTSPRELRRRYQQA
>CP029188.1|AWI32423.1|6762915_6764331_-|ATP-binding-protein
MTEQIPEAVVWCLAVGLPVVTVLLARQRGISARRRKRNEELAEGLRSREEELRHLVTVRLPALQESAHRPVPGAGLLDPRLADTDFAKCLDGVLERFAEAVESSQARADRSAKAALKSSMRSIQALASEQQVAISEMQDRHDHPDVLRDLLEIDHANAQFGRRAQAIAVLCGSWPGRQRAASALTDVVRGSTSRIRDYRRIRVHGEVDVAVESRAVEPVVLAVAELLDNAARHSQPSTQVEVGIRSVHNGACIVIDDAGVGMDGQALEKAALLLSGRRTVDVTRLDDPPQFGFAVVGVLAHRYRFSVSVDTHSPYGGVRAVVFLPGALLTHQDAAGDPAAAALVAESPASLTPSGPASGPAARPAPRPAPGSAAPTTAGGLPKRRRRAARTPATARPAPVPADDAGARSAEETARRIGAFARGTLSGRAAQETAYEAAQDSAHEAAHEAAQDAAHEAAHATAHEDEGNNRG
>CP029188.1|AWI32422.1|6762505_6762919_-|roadblock/LC7-domain-containing-protein
MIEPTNNELGWMLDEVLKVPGALHAILLSADGMLRAHSEHIGRDDAERLAAGLSGVQSISRSTAEFCDRVDTPWRQTLIEFAHGYVFLVAAGEGAYLAVSTTESVDMEAVTYRMHKLVDRLGRELTSPARQGTGTLA
>CP029188.1|AWI32421.1|6762146_6762473_-|DUF742-domain-containing-protein
MRPYVVTEGRAHPSRSTLDLVTLLISADGPSPSGLGPEKRRLTELCRPGALSVAEVAGHLSLPVSVTKVLVADLLDSGHIVTLAPVPAAVPSDARILQEVLDGLRARL
>CP029188.1|AWI32420.1|6761566_6762169_-|ATP-binding-protein
MGSAPASDDVYLRPGVRTAVKILVVGHFAVGKTTFVGTLSEIRPLHTEEVMTEAGALVDDLEGARGKTTTTVALDFGRLTLSDHVVLYLFGTPGQQRFTELWRDMTRGALGALVLADTRRLGQSFDVMGVLEELGLPYAVALNEFDGAPQHTLDEVREALDLLPDTPLVRCDARDRHSSTRALISLVEYLLTRTSELEHA
>CP029188.1|AWI32419.1|6760193_6761570_-|cytochrome
MTPETTPVPESGRRCPEPLYGPEFAADPAAAYRRMRRTGPTAPVELSPGVRATLVTGYDAALHVLRSPETFSKDSRRWRDMADGTVPADCPVAPMMAYRPNALLTDGPEHRRLREAITDSLGGVEPHALRNYVEQSADALIDRFAAAGEADLLAGYARPLPLLVLNRMFGCPPEYGERLVEGMAGIFELVDAEKANELLTTTVGALIALKRRTPGRDVTSRLIAHPARLTDEELVHTLVLLIGAGTEPEQNLIANSLRLLLSDDRFAGSLSGGSLPVEDALDEVLWSDPPMANYAVHFPVHDVLYEGTLLREGHPLVISFAAANTDPALVAEQHPGNRAHLAWSAGPHSCPAQGAARLIAAVAVEKLLDRLPDMELAVPVRDLEWRPGPFHRALAALPVSFRPAAVTRAAEGERPAGDEASAAADRRDSAPPGGRRSAPEAAAPASGWARLLAWWRGE
>CP029188.1|AWI32418.1|6759032_6760193_+|cytochrome-P450
MARVELPGAVGAFAVTSPALLKRLLTDARVSKDPRRHWPVWINGEVSPDWPLFAWVAVQNMFTAYGGEHRRLRNLVSRAFTARRTAALRPRIEEITEQLLDRVAEVGRRGEVVDLREEFCYPLPIQVISELFGLPSDKAVDLREVVDGLFHTSAGPDEVTATYARLYEVLGELVAAKRESPGDDLTTGLIAARDDEGTARLSEQELLDTLVLMIGAGHETTVNLIDNAAHALLTHPEQLAHIREGRATWDDAIEESLRADAPVANLPLRYAVEDIDLGELGGPQGTVIPAGEAILAAYAAAGRDAERYGKDADRFDVTRVDKEHLAFGYGVHHCLGAPLGRLEARVAIPALFDRFPGLTLAGPPEELLPVESFISHGHRSLPVRLF
>CP029188.1|AWI32417.1|6757158_6758604_+|glyceraldehyde-3-phosphate-dehydrogenase
MTVNEDSFTNWKHREEIAESMIPIIGKLHRERDVTVLLHSRSLVNKSVVSILKTHRFARQIAGEELSVTETMPFLKALAALDLGPSQIDIGMLAATYRTDDRGLSVEEFTAEAVAGATGANKIERREPRDVVLYGFGRIGRLVARLLIEKAGSGNGLRLRAIVVRRGGDQDIVKRASLLRRDSIHGQFQGTITVDEANSTIVANGNEIKVIYAGDPSEVDYTAYGIRDAILIDNTGKWRDREGLSTHLRPGIEKVVLTAPGKGDVPNIVHGVNHDTIKPDEQILSCASCTTNAIVPPLKAMADEYGVLRGHVETVHSFTNDQNLLDNYHKADRRGRSAPLNMVITETGAASAVAKALPDLKAPITGSSIRVPVPDVSIAILSLRLGRETTREEVLDYLRNVSLTSPLKRQIDFITAPDAVSNDFIGSRHASIVDAGATKVDGDSAILYLWYDNEFGYSCQVIRVVQHVSGVEYPTYPAPVA
>CP029188.1|AWI33252.1|6756135_6756624_-|hypothetical-protein
MMSDSMADEVYQPTGSNEEQGDAAHLDLEDALDEPDYDEILDQGYSPPERPLGVDRVGTTVAEQREGESLDQRLAVELPDVAADDSDGIGDLPGGEGEPIDDEVGSVRAGRLVAPDEGTRPTTDKQLFAGDVGIDAGAAGAEEAAMHVVVEEDRGEPPFGGP
>CP029188.1|AWI32426.1|6767376_6768741_+|amino-acid-decarboxylase
MAGVRPLALTALRHPTVSTLLADHRALLADLLDGLGSPLHIVLPEIFEENVAGLRQAFAEAGATADILFAKKANKAGCYVESAAALGVGVDVASTPELVNALAGGVPGHRIGISGPEKDDTLHALAVQHGCLVAVDSISELRRLAATARLARRRADVLLRSRTAGQPASRFGLSAAEREAAVGLCAELAGHIRLRGFSFHLNGYSTAERATAANEMIEHCLDARRRGSPSAELVDIGGGLPVRYVEPRLWDEFLERNEPAHYHAARDFKDFYPYGGQPAAQAVRAIMAHPAGGGESLSAKAGRNGVRFVVEPGRALLDQAGFTLYRVQQVDDRRDGEGYAIVTVAGSSFSLSEQWFNSDYLPDPLLISARPTADELFPACVAGSTCLESDLVTWRKIGFPRPVRRGDHLVYLNTAGYQMDSNESPFHDAALPLKAVLRLGDDGGPPRWRLDGIR
>CP029188.1|AWI32427.1|6768926_6769907_+|ornithine-cyclodeaminase
MSPSYAPPGQLWLLPQSQQEGLDLDHRQVIAVVEQAYRALREGGSNNPVKTIIDDPGHRSLSYSMVARDAGSGTVCFKAVYEFDPRRTRDAYRFHSFVFLVDDTTGAPIALMDVVKLGPLRSSATTALFARAACPDARTALVVGTGVQGQAALPMLLAALPKLERLQVFGTYPDGLRAVRESVDGREVEIVEDLRKAAGEADIVIGAAGLSVTEEVRRDWMKPGSVAVLLGYGVHADVCHGADYRIATDTAQMHATCDDLRGEDGSLPSIDAQLPDILLGRAPARRHPDDVVFAYNSGMAVTDAALGRYIADLAQADGRGEKVNFW
>CP029188.1|AWI32428.1|6769903_6771349_+|MATE-family-efflux-transporter
MSSTRTTGTTGTTGTTQTGLGWWAGNSRALLRLAFPLILTNFAYVALTTVDIVMLGRLGALEIAAAGLAIALFNQLRTTGTGLVTGVSNLVAEARVRDDRERIGALLFAGFFWATVCGVLFCAALLLIGPLLVLLGQDPAVVDKAGEFLMVMAPGMLPCLWFQNLRHFTTGLKRPGPLLAITLASVGATIGLNYVLIYGKFGLPAFGFVGVAIATVTVFLLSFLAFIAVILRDGVLRPYLTSPDARRWNGDAVRSVWRLGLPISGTYASEAGFFSVLTLIIGSLGVDALAAQTVLNQIVYIVFMISAGLSHAASIHISEADGLDDYTTARRMGLLGTAWGVVATLVIAVLYLAIPNPIVSLFISAEHAGNADVVALTVTGLLIAALMQVFDATQNIGNGILRGIGDTAGPFRISLVGYWLIGLPAGYLLGVSADWGVEGVWIGQTIGLAATAAILLVAFLRRVDRLHRAAAGAPVPEPESS
>CP029188.1|AWI32429.1|6771345_6772488_+|histidinol-phosphate-transaminase
MNHVLAPADSASLIRREVAGLPGYDPGADPDEVAALSGARRVIKLSNNESPFGVSPAVAEAVRLGLADGVSRYPDPTGRRLAEAIGKSLDVPAGRVVLGNGSENILELLCQAVLDPGELVVTQAPGFSLHETFPRVMGARVEKVPVTAGFGFDADAWREALAAGPKLVFLANPCNPTGAMLDAGQLEQIVAATPRSALLVLDEAYGEFARTDPEYPDGLEALRALDRPWIVLRTFSKAYGLAGVRVGYGIASDTALIQALDRVRTPYNVNRPAQDAAIAALGDHEHLADTVRRTRLEIARVTDRLRGAGLRVVPSSTNFLFIDTGRRSDGVARELHRAGIIVKAWREPGYENYIRASLSTPEDNDVFVRCLTEICAKDKP
>CP029188.1|AWI32430.1|6772484_6773468_+|cysteine-synthase
MIKTRISDLIGRTPLLKLPVADGSATVVLKMEQYNPTGTAKIRMARNMVDEAEEAGLLTPGGWLVESTSGNTGLGLALIAAERGYKFTAVVDNHSSTDKLRGMLAYGADILNVAGDEEGLATAERDTVAERLAAEHGAYWTAQHRNPGNPNGYRPLARELHDDLGDGIHYLYGAVGTGGSLCGTGRVLRERIPDLKIVGVEPVGSVVFGGEGAPYHQSGTGTPEGSEIGGVVDYALIDQGLKASDAEAFETCRYLARNFGVLIGGSAGGVVYKALEQAQGAGPETTIVVLVCDGGDKYLDTVFNDDWMAANGLFDEQVVHRLAAMLR
>CP029188.1|AWI32431.1|6773606_6774626_+|ABC-transporter-substrate-binding-protein
MKKITATLTALMAFTVAGCAGDRSSDAAGKDTAKGKNATAYPFTLDNCGTKVTYKAAPQKVVALNQTAAEILIHLGVGDRIAGTGYEIEKAPAAIAEEYAKIPQLSAKGDTVKHEKLLEAQPDFVYSSFASFLTKEEAGDRKELHDLGVPTYLTEFDCSYHEAVADADFDMLFEEYRRLGRIMGRPDAGEKLATEQKAVVDKAVGEVEKRDKPLKVMWFYSTFEGTPWAAGPGGLPQHISELVGVENIFADAKSKWAEVSWDEVAARNPDVVILADLTRGEPNDTAKEKIELLKKDPLTSKLAAVQDDRFITIPGSHMDPAYGSASVVPALVDGLRKLG
>CP029188.1|AWI32432.1|6774706_6775735_+|iron-ABC-transporter-permease
MRRRRASTAALFLLTAAGLLVSVVTATLFGSADIQPLDVVSTILRHIGLEAIAPTPPLPGLHDALIWQSRFPRVLLAAVIGMALAVSGAVLQAVTRNPLADPYLLGVSSGASTGAVAVLLLGIGGSISLSTGAFAGGLVSFGVLLVLLGGGRVASPARVVLTGVLVSQFFAAVTSVILMVSGDANSTRGFTYWLLGTLAGARWEAVTVTVVIILIGVAAVQFFAPALDAFTFGWDSAEALGINVTAARVWLMVLTSVMTAAAVAASGAIGFIGLLVPHAVRILAGPTHRCLLPLSAIVGAIFLIWVDVFARTAFSPHELPAGVITALLGAPAFALVLKRLES
>CP029188.1|AWI32433.1|6775734_6776550_+|histidinol-phosphatase
MGRITTTRLSWSVKGHRLLDDIEMAAGDGKVVGLLGPNGSGKSTLLRLLAGLRRPDTGTIRYDDTSLDDLGRRVRARRLAVVEQDVSAHNRVNVRQIVELGRTPFRGRFDALTQYDRRIVDAALERTDITDKQHRSWHTLSGGEKQRTQLARALAQEPREILLDEPTNHLDIRHQLELLDLLTSLDVTCVVALHDLNLAARYCDHVVVLDGGGVAAAGVPETVLTPDLIASVYGVSVLVDREPATGTLRITYLGAAASRATAAKERQLDPR
>CP029188.1|AWI32434.1|6776736_6777135_+|hypothetical-protein
MEEPRIRLGNDDVWLELARTRTDSWQITAEWSSCLTADFSADLSATEVVDFVARMLSHLRAPSGGRFSAVVTPGRNNPLTLKGEPVGDGFAFFVRLTPNGDDDVCHLQMEIDPIATLELRETFSALHTALVV
>CP029188.1|AWI32435.1|6777553_6779077_-|aldehyde-dehydrogenase
MTRYAAPGTEGAIVTYASRYDHWIGGEFVAPARGQYFENPSPVNGKAFTEIARGTAEDVERALDAAHAAAPGWGSTAPDARANTLLRIADRMEAHLEELAVAETWENGKPVRETLAADIPLAIDHFRYFAGVLRAQEGSLSEIDDDTVAYHFHEPLGVVAQIIPWNFPILMAVWKLAPALAAGNAVVLKPAEQTPASVHYWMSLVADLLPPGVVNIVNGFGAEAGKPLASSPRVAKVAFTGETTTGRLIMQYAAENIKPVTLELGGKSPNIFFDDIWSADDELRDKALEGFTMFALNQGEVCTCPSRALIQRGHYGDFLDAGIARTEAIVPGHPLDTDTMIGAQASNDQLQKILSYLDIGQQEGAKILTGGQRIEYGGELAGGYYVQPTIFEGDNRMRVFQEEIFGPVVAVTSFADFDDAIRTANDTLYGLGAGVWTRDVNQAYRAGRAIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLDHYQQTKNLLVSYSPKKLGFF

Crispr_ID: CP029188_30

• CRISPR_ID: CP029188_30
• CRISPR_location: 6856087-6856203
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of CP029188_30

Consensus_repeat	Method
GGGACGCCGGGGACGCCCGGGACGCCG	CRISPRCasFinder

spacers of CP029188_30

>30.1|6856114|18|CP029188|CRISPRCasFinder
CGGATACCCGGGACGCCG
>30.2|6856159|18|CP029188|CRISPRCasFinder
GCGAGGGCGGGGCTTTCG

CRISPR arrays and Neighbor proteins around CP029188_30

CRISPR arrays

The CRISPR arrays of CP029188_30

>merge|CP029188|30|6856087-6856203|CRISPRCasFinder
CGGACACCTCGGACACCTCGGACGCCTCGGATACCCGGGACGCCGGGGACGCCCGGGACGCCGCCGGTACCGGCGAGGGCGGGGCTTTCGGGGACGCCGGGGACGCCGGGGACGCCG

>CP029188|30|30|6856087-6856203|CRISPRCasFinder
CGGACACCTCGGACACCTCGGACGCCT	CGGATACCCGGGACGCCG
GGGACGCCCGGGACGCCGCCGGTACCG	GCGAGGGCGGGGCTTTCG
GGGACGCCGGGGACGCCGGGGACGCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI32497.1|6865654_6865993_+|DUF397-domain-containing-protein	unknown	unknown	gnl|CDD|377231
CP029188.1|AWI32498.1|6865995_6866211_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32499.1|6866510_6867368_+|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223669
CP029188.1|AWI32492.1|6852606_6853476_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|225176
CP029188.1|AWI32495.1|6863541_6864867_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32486.1|6844095_6844341_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32500.1|6867498_6868527_+|L-threonine-3-dehydrogenase	unknown	unknown	gnl|CDD|180054
CP029188.1|AWI32502.1|6869804_6870719_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|176115
CP029188.1|AWI32484.1|6841947_6842181_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32493.1|6853479_6853803_-|acyl-carrier-protein	unknown	unknown	gnl|CDD|376348
CP029188.1|AWI32488.1|6845438_6848474_-|hypothetical-protein	unknown	unknown	gnl|CDD|369272
CP029188.1|AWI32496.1|6865047_6865518_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32501.1|6868608_6869808_+|glycine-C-acetyltransferase	unknown	unknown	gnl|CDD|235893
CP029188.1|AWI32490.1|6850067_6851099_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|372616
CP029188.1|AWI32485.1|6842614_6843913_+|hypothetical-protein	unknown	unknown	gnl|CDD|227511
CP029188.1|AWI32491.1|6851146_6852610_-|glycosyl-transferase	unknown	unknown	gnl|CDD|340817
CP029188.1|AWI32489.1|6848705_6849824_-|hypothetical-protein	unknown	unknown	gnl|CDD|369272
CP029188.1|AWI32494.1|6861664_6862990_-|phenylacetate--CoA-ligase	unknown	unknown	gnl|CDD|131210
CP029188.1|AWI33256.1|6863225_6863540_+|divalent-cation-tolerance-protein-CutA	unknown	unknown	gnl|CDD|376987
CP029188.1|AWI32487.1|6844405_6845365_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|223532

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI32497.1|6865654_6865993_+|DUF397-domain-containing-protein	gnl|CDD|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	1.24941e-06
CP029188.1|AWI32499.1|6866510_6867368_+|alpha/beta-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.87945e-26
CP029188.1|AWI32492.1|6852606_6853476_-|alpha/beta-hydrolase	gnl|CDD|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.34688e-24
CP029188.1|AWI32485.1|6842614_6843913_+|hypothetical-protein	gnl|CDD|227511	COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton].	6.26454e-42
CP029188.1|AWI32502.1|6869804_6870719_+|LysR-family-transcriptional-regulator	gnl|CDD|176115	cd08423, PBP2_LTTR_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.66817e-55
CP029188.1|AWI32493.1|6853479_6853803_-|acyl-carrier-protein	gnl|CDD|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	0.000868383
CP029188.1|AWI32488.1|6845438_6848474_-|hypothetical-protein	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	1.03826e-45
CP029188.1|AWI32501.1|6868608_6869808_+|glycine-C-acetyltransferase	gnl|CDD|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
CP029188.1|AWI32490.1|6850067_6851099_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.048e-24
CP029188.1|AWI32500.1|6867498_6868527_+|L-threonine-3-dehydrogenase	gnl|CDD|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0
CP029188.1|AWI32491.1|6851146_6852610_-|glycosyl-transferase	gnl|CDD|340817	cd03784, GT1_Gtf-like, UDP-glycosyltransferases and similar proteins. This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.	1.27119e-52
CP029188.1|AWI32489.1|6848705_6849824_-|hypothetical-protein	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	4.57398e-39
CP029188.1|AWI32494.1|6861664_6862990_-|phenylacetate--CoA-ligase	gnl|CDD|131210	TIGR02155, Phenylacetate-coenzyme_A_ligase, phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions. [Energy metabolism, Other].	0
CP029188.1|AWI33256.1|6863225_6863540_+|divalent-cation-tolerance-protein-CutA	gnl|CDD|376987	pfam03091, CutA1, CutA1 divalent ion tolerance protein. Several gene loci with a possible involvement in cellular tolerance to copper have been identified. One such locus in eubacteria and archaebacteria, cutA, is thought to be involved in cellular tolerance to a wide variety of divalent cations other than copper. The cutA locus consists of two operons, of one and two genes. The CutA1 protein is a cytoplasmic protein, encoded by the single-gene operon and has been linked to divalent cation tolerance. It has no recognized structural motifs. This family also contains putative proteins from eukaryotes (human and Drosophila).	2.45359e-33
CP029188.1|AWI32487.1|6844405_6845365_-|GNAT-family-N-acetyltransferase	gnl|CDD|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	2.97501e-08

Protein sequences

>CP029188.1|AWI32493.1|6853479_6853803_-|acyl-carrier-protein
MTTTHPAGPPGADEDAILADITAMIAQVLEDDGLDGTEVGTQTRFGRDLEFESIDLVTLAGHLEARYGRDVNFAEFVASMELDDIIELTVGRLVEHVAGCLKSAEAA
>CP029188.1|AWI32492.1|6852606_6853476_-|alpha/beta-hydrolase
MAIIDTTGVPLHVQRLRPAGERAGRETVVLLHGLLTDSLASYYFTVAPAFAAAGLDVVMYDHRGHGRSGRPASGYGLGRFTDDLGALLDRLEIPGPVHLVGNSFGGTVSFGYALRRPDRVASISVVESEPATASWARKIAGLLDRVRHEMTVNESEALDWIAAHRGRRTARLARSAGRLVRDTAIAAELTVCEPVTEDALRLLDCPVLAVYGADSDLCEQAPWLRSLLPRSRTVLVPGHEHSVLVEAPGRVRDEVLGWIAEHAAPGGPGGARLGEGGRAAAARAEVNAP
>CP029188.1|AWI32491.1|6851146_6852610_-|glycosyl-transferase
MSRFLFVVPPLVGHVNPLVGVAAELASRGHPVAWAGVPELVCRLAGPDAHVFPSPVSWAEADRPVRPADIRGPEALRFLWERFLVPLADAMADGVREAVLAFRPDVVVADQQAPAGALVAERLGVPWATSATTPAEFTDALAAMPKAAAWIDALLRDLRQRIGDPEGTADPRFSPRLVLAFTAPELAGPPARGGDAIRWVGPSLTARPSPADFPWEWLDPGRATVLVTLGTANTGAGERFLTACAEALRARADRLQAVVVDPQGALGARPGAGPNGAFPGTGTGTERGTGTGTGGVRVDGDLLALPEVPQLALLRRVDAVVCHAGHNTVVEALWHGVPLVVAPIRDDQPVVAAQVCDAGAGVRVRFGRATAARIGDAVDAVLYGPGHRAAARAVGSALRAAGGAAAAADHLERMPEVPGDHEDVEASEDSEACEVYEDAEEHGGPGKPGKPGKPEQHEEPGKPGNRRNPGKPGKPGKPGTAEDREAG
>CP029188.1|AWI32490.1|6850067_6851099_-|class-I-SAM-dependent-methyltransferase
MAVLRAEYGAELADGPRAFFEPLRHGCPWCGSVLIGGHLLTRDLIQHKPGRFRIDRCRSCGHLFQNPRLNARGLDFYYRDFYDRLGEQQLDAMFGGRTRSYRRRAESVRPHLGGVKRWLDVGTGHGHFCEAARTVLPDVVFDGLDRSEGVETAERLGRVERGFRGGFTELAGELAGEYDAVSLFHYLEHCPEPLRELEAARTSLRPGGHLVVEVPDPESRYARLLGRWWLPWLQPQHLHLMPVGNLRGALSDLGFTVVAEQHRSAHERVDLVAAVWLALEGAAPRDDLPWLPPVGPVHRALRGAALLAGVPALAAAALLDQAVAPFAGRLGLCNAYRLVARKD
>CP029188.1|AWI32489.1|6848705_6849824_-|hypothetical-protein
MIMSGRRRRPRPLYGARWKAALLSPAVLTVVITSLAFSTPREIAFSRLLPAAPALAAAMWPVLPTILLGTFCLAVMISLSFFYTDLGTPYTGAAIILVTLAAAYASHVRIQREEALFHVRLVADAAQKVLLRPLPSRINDVEIESLYLAAQEQARIGGDFYEVADTPYGVRLLIGDVRGKGLSAVGAASAVINCFRENAYDQPDLRGITRRLETSITRYTAAFPTQDLPERFATALLVEIPHYGGAIRILNCGHPPPMLVHRGEIRVLEPSTPSPPLNLATLIGDHYYVDTVPFDPGDHLLLYTDGVTETRDRTGEFFPLPDWMRDNGPAAPRDLLDRLHHDLLRYSGGRLDDDIAALAVRCPNSRGPGATA
>CP029188.1|AWI32488.1|6845438_6848474_-|hypothetical-protein
MERLPTSPGEHPGTAQPSPVPADGRPDPAHPSGTAPGDRPGTAGPGPGRPLPPAATAVISEQGVVTGWSEGARRLLGYAPADVMGRPATGLLAQGAAPVAPAAAASPQDLSGTLALRHRDGHDLALPLTATRRTTTSGITEWLVTTASGDAAASEDAGATEAAEASGEAEANEAAAASGEAEAAAVPGDAAAYEEAAPAAATPPQDGAPGAPAPDGPAPAVAAAAAGDDGTPAAGPSDRGAPPGGPAGGGPAGGDPADGGPPGVAPGAAQRAPEHPAGAEAAGGHPAGGEAAGGDAAGAAPYAGPPTDGPPAAGTAAAAPSHPGPRAGGAPPIGSATDEALAARAFAQSPCMFAVFDADLRLLRANAAMEHVLSLPEARMRGLRLTEFLPDPVSEETERTMSLVLRTGRPQQAPTALRPTGGSAEAGRPATVTPLRDDDGGIRAVCLAAHARTEEPEHHLTRQRMLLEDPGAGIGTTLDLERTAQELTDAAVPRLADSAAVDLCETPRHSRPTGPLPLRRTAYRSHPPGTGPPAGPDPVTHPAHSPLTLCLTTGRSAVYRMDDPSLAQWRAGDPAAARLDRAGTHTLMAVPLLMAGSTLGVALFTRDRNPHPFTPDDLQLAEQLTHRAATGIHNARRFTRERTTTMTLQRSLLPHTLPEQPALDIATRYLPAGSEAGVGGDWFDVIPLSGARVALVVGDVVGHGIRASATMGRLRTAVRTLADVDLPPDELLTRLDDLVLHLSTDESSTSADATTGIGTTCLYAIYDPISRELTHARAGHPPPAAATPDGGVYFLDTPAGPPLGLGGLPFETSTTTLAEGTLLAFYTNGLLNPRETDIDQTLDTLFTALAHPSSGLEATCDRILTTLLTHPPTDDIALLIARTRTLHPHHVATWALPHDPAVVTEARRRTTEQLTGWGLAEAAFITELIVSELVTNAIRYGKPPIRLRLIHTDTTLTTEVTDHSSTSPHLRQAHTYDENGRGLYLIAQLTQRWGTRHTPTSKTIWTEQTLL
>CP029188.1|AWI32487.1|6844405_6845365_-|GNAT-family-N-acetyltransferase
MTTLPTPPPGITVRPATLDDADAVCALLNEIDLLEIGRADTSLTEVEADLRHPEVDLERDSWLLLDGGRLVGYGLLWDDSGHERIDMDQYTLPDRQQVFGHLFDLMEARAVQRAALNGAPRAVVHMHLTTKPTTDVDALRGRGWRPVRRYNVLTRPLSPAADPVPSPPPGVTLRPCAAEEDRRSAHAVLQASFADHFDFQPRTYEQWLHDVDADRADWSLVWIAHVDGIGDAAAVRTHDNRASSGWISNLGVLREARGRGLGGHLLRHAFGHYAAMGRDRMGLGVDTDNSSGALALYEGHGMTLDFAVDTWELTRPAGS
>CP029188.1|AWI32486.1|6844095_6844341_+|hypothetical-protein
MSSRPRRRAWPPQVVELPPPAYPAHDGALQITATDCERCGTRLSGINGRYACGVCGWTNPWNDGHRDLPSAEEDPDFPHRR
>CP029188.1|AWI32485.1|6842614_6843913_+|hypothetical-protein
MDEPNRPVRSTAGRTGGVLAAVLVAALAWTPGAHAAGPGGDGGAVPFTQAWGDNDDGQLGTGGGAGSAVPVTVPGLTGIRGLAAGYEHSLALLRDGTVWAWGDNDHGQLGDGTETDSGTPVRVLGLTGVKAVAAGDDFSLALLRDGTVRAWGDNDNGQLGDGTLADSSLPVQVHGLSGVKAVAGGDNHAVALLRDGTVRAWGDNDHGQLGNGRLTDSTIPVRVQGLTRAGAVAAGGNHSLAVVRDGQVRAWGDNFSGQLGNGTNIDSTTPVEVQALTGVEAVGAGLGHSLALAGDGTVWAWGDNASGRLGDGTTTDSTVPVRVRGLRGVTAIATAEEHNLAVTSSCDCRGAGPPVRPSCRCGGGPDGLPGIGPSGPGDAPAGSGSAVHAWGENGDGQLGNESTADSSVPVGVTTARGKITLIAAGGEHSLAG
>CP029188.1|AWI32484.1|6841947_6842181_-|hypothetical-protein
MATCEVCGNDYEMSFEVHAAGAVHTFDSIECAAQRMAPMCENCGCRILGHGLQADGQFFCCAHCARRKGVSELTDHA
>CP029188.1|AWI32494.1|6861664_6862990_-|phenylacetate--CoA-ligase
MADRTDRTDLKDLTGPADLLDAGERLGREELRALQLERLRTTLRHAYDHVGFYRKSFDEAGLRPEDCRSLEDLARFPFTAKADLRDHYPFGMFAVEQSRVRRIHASSGTTGRPTVVGYTDRDLDTWADVVARSIRAAGGRPGHTVHVAYGYGLFTGGLGAHYGAERLGCTVVPASGGMTARQVQLIQDFRPEIVMVTPSYMLTLLDEFERQGVDPRSTSLKVGIFGAEPWTEEMRREIEERFAIDAVDIYGLSEVMGPGVAQECVETKDGLHIWEDHFYPEVVDPVTGEVLPDGEEGELVFTSLTKEAMPVIRYRTRDLTRLLPGTARVFRRMEKVTGRSDDMIILRGVNLFPTQIEEIVLRTPGLAPHFQLRLTREGRMDALTVRVEAREGLSPEQREAAAMEVAAAVKDGVGVSVGVEVVDPETLERSVGKIKRIVDLR
>CP029188.1|AWI33256.1|6863225_6863540_+|divalent-cation-tolerance-protein-CutA
MQVSTATPTKEQAVRLAQSVVKERLAAGAQIIGPVTSVFWHLGEFGTGEEWQLLLKTRTKRYPELEQHLIRHHPWENPEIAAVPIIAGAEACMRWVSENTQPET
>CP029188.1|AWI32495.1|6863541_6864867_-|hypothetical-protein
MNDFTPPTALPAHVLECTEMRTALAAHDFGTVFRLAHDMAGISYSKIAAGCGIKPERVGTLARGRGRITSFDKAVAVSDALRVPGHMLGLAHRPWEMGEGASPGPAARTTTAQRDRAVRRREFLHAATGAGLTVGITDLARPAAGKRIGADFPDLLRLRAARLRRLDTVLGGGDTYRVYLGEYQATKALLRDASYTEATGRALLSVLAEQAQQAGWAAFDGGREADATALYKESHTAATGAGDTSLAGNALAFLAYQTVNGDRTAGVEIAARSCTALGPDAPAGVRALLHERRAWACAMAGLATDTEHALAEAGSALADAHAAPQPDWVSWVDRTELQIMTGRCWAELGRPLRAVPVLEEALGGYDDCQARDKALYLSWLAAAYLMAGEVEQAARTTSRALALADGVASVRPRRRLDILLGRLVRHRGVADVDEALDRAAL
>CP029188.1|AWI32496.1|6865047_6865518_+|hypothetical-protein
MIDRTVPDESAAGQGDTDGDTDSDAGESGPGPMDLAAMRETARQVMVAHEPGSDLDGLSAAMRGFVRLLVPALRTLIAARPSGDRPAMVARVGVDEAWRRLHTTPGLGPGAAHRRARRLALSVLSLCDHYENLRPTAAASAAPIPGRRRQAERSSP
>CP029188.1|AWI32497.1|6865654_6865993_+|DUF397-domain-containing-protein
MGTISNGRTTKAYENPNAPGLDWRKAGRTDLDPILKDCVILAAAPDAEDHPHPHVPDGTRMVALSDDKDPAGPVLYFTRAEIRKFIEGVKAGEFDDLMATDEEMRQAAAVTA
>CP029188.1|AWI32498.1|6865995_6866211_+|hypothetical-protein
MDAQQVSTAFAAVRQRLARTPCRACRSRETDALIAFGRVLVSCENCGDAANLGPLHSVLAAGSAGAGRRGR
>CP029188.1|AWI32499.1|6866510_6867368_+|alpha/beta-hydrolase
MPTFRAYDGTVLAYHAEGEGEPLVCLPGGPMRASAYLGDLGGLTADRRLVRLDLRGTGDSAVPDDDATYRCDRLADDVEALREHCGLDRADVLAHSAGANLALLYAAACPGRVSSLVLVTPGARALGITATEEDWRGAVALRRGEPWYEAGRAAWEAFLGGAELDDLWPDIVPFMYGRWDAAARKHAADDAHQSDPHARAGYYAEGAFDPGATREALAALEAPVLVIAGEYDGAPTPARAGEIAAVFPHGTVAVRPGAGHYPWLDDPGAFRRTVAGFLETGGRPP
>CP029188.1|AWI32500.1|6867498_6868527_+|L-threonine-3-dehydrogenase
MKALVKQHAEPGLWLMDVPEPEYGPGDVLIKVLRTGICGTDLHIRSWDGWAQQTISTPLVAGHEFVGEVAAVGSDVADIAVGDLVSGEGHLVCGKCRNCLAGRRHLCRSTVGLGVGRDGAFAEYVCLPASNVWVHRTRVDLDVAAIFDPFGNAVHTALSFPLVGEDVLITGAGPIGVMAAAVARHAGARNVVVTDVSEPRLELARKVGATLAVNVAESGIAEAQRTLGLKEGFDVGLEMSGRPEAVRDMIDNMTHGGRIAMLGLPAEEFAVDWSKIVTSMITIKGIYGREMFETWYAMTVLLEGGLDLSPVITGSYGYRDFDAAFDEAATARSGKIILDWTA
>CP029188.1|AWI32501.1|6868608_6869808_+|glycine-C-acetyltransferase
MYASVRDDLRATLDEIRAAGLHKPERVIGTPQSASVAVTTGGAPGEVLNFCANNYLGLADHPEVVAAGKEALDRWGYGMASVRFICGTQEVHKELERRLSAFLGQEDTILYSSCFDANGGVFETLLGPEDAVISDALNHASIIDGIRLSKAARFRYANRDMAELEARLKEATEGGARRKLIVTDGVFSMDGYVAPLTEICDLADRYDAMVMVDDSHAVGFVGPGGRGTPELHGVMDRVDIITGTLGKALGGASGGYVAARAEIVELLRQRSRPYLFSNSLAPVIAAASLTVLDLLESAGDLREKLSANTALFRRRMTEEGFEILPGDHAIAPVMIGDAAEAGRMAELLLERGVYVIGFSYPVVPMGQARIRVQLSAAHSTEDVERAVAAFVDARATMAG
>CP029188.1|AWI32502.1|6869804_6870719_+|LysR-family-transcriptional-regulator
MIDPRRLRILRAVADHRTVTAAAAALYLTPSAVSQQLAALEQETGHTLLIRSGRGVTPTAAGEILLGHAHAVLSQLERAEAELAAYAGGAAGEVTVASFATGIAEVLAPALGRLARDHPGIRVRVRDAEGDESLPMVLDGEADLALAVEYRGAPREDDLRLARVPLYAEPFDAVLHCGHPLADGGGVELAALADSDWIGPYPGNPCHEVMLLACELAGFQPRLTHSSDDFRAVVALAGAGAGVALVPRSALRGMELKDTVVLPVAGPAATRRVFAAVRRGAEGHPLLSPVLEALSGAAAGLSTG

Crispr_ID: CP029188_31

• CRISPR_ID: CP029188_31
• CRISPR_location: 7176531-7176621
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029188_31

Consensus_repeat	Method
CGTCGCCGTCACCCAGCGGAGCCG	CRISPRCasFinder

spacers of CP029188_31

>31.1|7176555|43|CP029188|CRISPRCasFinder
TGTCGGTGGAATCGACCTGGACAAGCCGGCGGCTCTTTCCGGC

CRISPR arrays and Neighbor proteins around CP029188_31

CRISPR arrays

The CRISPR arrays of CP029188_31

>merge|CP029188|31|7176531-7176621|CRISPRCasFinder
CGTCGCCGTCACCCAGCGGAGCCGTGTCGGTGGAATCGACCTGGACAAGCCGGCGGCTCTTTCCGGCCGTCGCCGTCACCCACCGGAGCCG

>CP029188|31|31|7176531-7176621|CRISPRCasFinder
CGTCGCCGTCACCCAGCGGAGCCG	TGTCGGTGGAATCGACCTGGACAAGCCGGCGGCTCTTTCCGGC
CGTCGCCGTCACCCACCGGAGCCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029188.1|AWI32758.1|7174929_7176192_-|MFS-transporter	unknown	unknown	gnl|CDD|340887
CP029188.1|AWI32757.1|7173627_7174839_-|methionine-adenosyltransferase	unknown	unknown	gnl|CDD|235374
CP029188.1|AWI32752.1|7169599_7170925_-|MFS-transporter	unknown	unknown	gnl|CDD|340925
CP029188.1|AWI32769.1|7187408_7188794_-|hypothetical-protein	unknown	unknown	gnl|CDD|341228
CP029188.1|AWI32761.1|7177685_7178486_+|aldolase	unknown	unknown	gnl|CDD|226356
CP029188.1|AWI32766.1|7183504_7184944_+|dihydroorotase	unknown	unknown	gnl|CDD|223122
CP029188.1|AWI32753.1|7171304_7171844_+|alkylhydroperoxidase	unknown	unknown	gnl|CDD|130981
CP029188.1|AWI32756.1|7173212_7173599_-|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32763.1|7179499_7181362_+|asparagine-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl|CDD|273676
CP029188.1|AWI32751.1|7169220_7169508_+|DUF4287-domain-containing-protein	unknown	unknown	gnl|CDD|379478
CP029188.1|AWI32764.1|7181358_7182420_+|hypothetical-protein	unknown	unknown	gnl|CDD|380230
CP029188.1|AWI32750.1|7167738_7168989_+|RNA-polymerase-subunit-sigma-24	unknown	unknown	gnl|CDD|227277
CP029188.1|AWI32754.1|7171884_7172850_+|short-chain-dehydrogenase	unknown	unknown	gnl|CDD|235737
CP029188.1|AWI32755.1|7172822_7173056_+|hypothetical-protein	unknown	unknown	unknown
CP029188.1|AWI32768.1|7186883_7187219_+|hypothetical-protein	unknown	unknown	gnl|CDD|291301
CP029188.1|AWI32760.1|7176828_7177689_+|taurine-dioxygenase	unknown	unknown	gnl|CDD|181947
CP029188.1|AWI32762.1|7178523_7179468_+|cysteine-synthase-A	unknown	unknown	gnl|CDD|107204
CP029188.1|AWI32759.1|7176188_7176395_-|4-oxalocrotonate-tautomerase-family-enzyme	unknown	unknown	gnl|CDD|224853
CP029188.1|AWI32765.1|7182416_7183517_+|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|224871
CP029188.1|AWI32767.1|7184947_7186771_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|236046

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029188.1|AWI32758.1|7174929_7176192_-|MFS-transporter	gnl|CDD|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.30383e-55
CP029188.1|AWI32757.1|7173627_7174839_-|methionine-adenosyltransferase	gnl|CDD|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
CP029188.1|AWI32752.1|7169599_7170925_-|MFS-transporter	gnl|CDD|340925	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters. This subfamily includes Escherichia coli alpha-ketoglutarate permease (KgtP) and similar proteins. KgtP is a constitutively expressed proton symporter that functions in the uptake of alpha-ketoglutarate across the boundary membrane. Also included is a putative transporter from Pseudomonas aeruginosa named dicarboxylic acid transporter PcaT. The KgtP subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.88276e-98
CP029188.1|AWI32769.1|7187408_7188794_-|hypothetical-protein	gnl|CDD|341228	cd04433, AFD_class_I, Adenylate forming domain, Class I, also known as the ANL superfamily. This family is known as the ANL (acyl-CoA synthetases, the NRPS adenylation domains, and the Luciferase enzymes) superfamily. It includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases.The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain.	2.60175e-68
CP029188.1|AWI32761.1|7177685_7178486_+|aldolase	gnl|CDD|226356	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism].	3.17852e-57
CP029188.1|AWI32766.1|7183504_7184944_+|dihydroorotase	gnl|CDD|223122	COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism].	4.8039e-125
CP029188.1|AWI32753.1|7171304_7171844_+|alkylhydroperoxidase	gnl|CDD|130981	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme. This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.	4.81198e-13
CP029188.1|AWI32763.1|7179499_7181362_+|asparagine-synthase-(glutamine-hydrolyzing)	gnl|CDD|273676	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff. [Amino acid biosynthesis, Aspartate family].	1.23975e-103
CP029188.1|AWI32751.1|7169220_7169508_+|DUF4287-domain-containing-protein	gnl|CDD|379478	pfam14117, DUF4287, Domain of unknown function (DUF4287). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 70 and 180 amino acids in length.	5.06228e-23
CP029188.1|AWI32764.1|7181358_7182420_+|hypothetical-protein	gnl|CDD|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	3.2147e-23
CP029188.1|AWI32750.1|7167738_7168989_+|RNA-polymerase-subunit-sigma-24	gnl|CDD|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	4.12518e-118
CP029188.1|AWI32754.1|7171884_7172850_+|short-chain-dehydrogenase	gnl|CDD|235737	PRK06197, PRK06197, short chain dehydrogenase; Provisional.	4.94407e-124
CP029188.1|AWI32768.1|7186883_7187219_+|hypothetical-protein	gnl|CDD|291301	pfam14627, DUF4453, Domain of unknown function (DUF4453). This short domain is found only on a small subgroup of proteins from Gram-negative Proteobacteria that also carry a YARHG domain, pfam13308. They carry three conserved tryptophan and three conserved cysteine residues.	0.00275826
CP029188.1|AWI32760.1|7176828_7177689_+|taurine-dioxygenase	gnl|CDD|181947	PRK09553, tauD, taurine dioxygenase; Reviewed.	2.10671e-75
CP029188.1|AWI32762.1|7178523_7179468_+|cysteine-synthase-A	gnl|CDD|107204	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.	2.61461e-127
CP029188.1|AWI32759.1|7176188_7176395_-|4-oxalocrotonate-tautomerase-family-enzyme	gnl|CDD|224853	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only].	1.23537e-15
CP029188.1|AWI32765.1|7182416_7183517_+|acyl-CoA-dehydrogenase	gnl|CDD|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	6.55975e-54
CP029188.1|AWI32767.1|7184947_7186771_+|FAD-dependent-oxidoreductase	gnl|CDD|236046	PRK07538, PRK07538, hypothetical protein; Provisional.	1.01658e-52

Protein sequences

>CP029188.1|AWI32759.1|7176188_7176395_-|4-oxalocrotonate-tautomerase-family-enzyme
MPVITVNWWQGNDRAARRELVSGITDVVSRVSGCPGEAVTVIVRDVDPGHWGKGGHLADETRLPRSRR
>CP029188.1|AWI32758.1|7174929_7176192_-|MFS-transporter
MNVSSLHPNIRLRIAVGFVQRLLSIMLMPLLVIHLAVLYGPAVAGVLTVAVAAAGIAANFLGGHLADVHGRRPVMVAGELGATVTFALLALANSPWWTSGVATFVLFLLNTCFSQMAAPAADAMMVDVSTPDNRPLVYTINYWSINLAFTVGALVGGFLYDGHFLHLLTGAAVLCLLTTAVVWRWISETAPRTGERPAAGPGAMVRGYLAVAHDRVFLRLMAAAALISAVEMQIGYYIAVRLADEFSPQTLAAVGSWNLEVDGVAILGVLRAVNAALVVALVLVAKALLARVPERARLYGGIAVFTVGYMTWAVSNTGWVLIAAAVVLTVGEIASVPVRQALLADLIDSEARTKYMAAYALNARVGLLVAALCVTLGAFVPAVGMSLLYGTAGLAAILLYRSLLGVRAAREAGKLPAPVA
>CP029188.1|AWI32757.1|7173627_7174839_-|methionine-adenosyltransferase
MTRRLFTSESVTEGHPDKIADQISDTILDALLREDPSSRVAVETLITTGLVHVAGEVTTKAWADIPTLVRNRILEIGYDSSKKGFDGASCGVSVSIGSQSPDIAQGVDTAYENRVEGDDDELDRQGAGDQGLMFGYACDETPELMPLPIHLAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKAVRLDTVVVSSQHASDIDLDSLLAPDVREFVVEHVLGQLVEDGIKLDTEGYRLLVNPTGRFEIGGPMGDAGLTGRKIIIDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRCEVQVAYAIGKAEPVGLFVETFGTEETPLDLIERAIGEVFDLRPAAIIRDLDLLRPIYARTAAYGHFGRELPDFTWERTDRVDALRAAAGLD
>CP029188.1|AWI32756.1|7173212_7173599_-|hypothetical-protein
MSATTVRPETGFFPEPAATDRARRRVEELMADFRTGAWRPTRLEGRVAGLLLTSTAGDGMLTPRRIRAALWEGSLAMTRDNDGRFARVLADLLPVLEDPRLVSLDVVDAAGELVGAVASTAVASTAAA
>CP029188.1|AWI32755.1|7172822_7173056_+|hypothetical-protein
MPGDGRAGVSAVADEGIAAGVGAGLDMQERFRPVAAWAWIWRSFDMALPDVAGAGWQADPAAEARETGASPAEGTRA
>CP029188.1|AWI32754.1|7171884_7172850_+|short-chain-dehydrogenase
MAWSTAHVPDQSGRTALVTGASGGIGLETARVLAARGAHVVLACRSVERARAAAARIGGSTEAVPLDLASLDSVRDAAAEVRGRHDRLDLLINNAGVMFPPDARTEDGFETHFGVNHLGHFALTGLLLDLMTRVPGSRVVTVASLAHRAGFGGFGAERARSATGRRSVAAYGRSKLANLMFARELQRRFAAAGAATLSLAAHPGLSATGLWHGDPPALLRPVAGAGLRLLAQPADRAALPSLRAATDPRAAGGAYLGPRNRFESRGAPGPARSSRASGDAAAQARLWDLSEELTGVRYAFTPERAEDPPAAAVCPVTGARG
>CP029188.1|AWI32753.1|7171304_7171844_+|alkylhydroperoxidase
MPHIEITHGLPGISGLFAQRPDTAAVLSRLAETLLRGASPLGRGERELIAAHVSNLNCTAFCSDSHSAFAAAQLDGGAGLVASVLADVDTAPVTPLVRALLKVAAEVQAKAAPVSDEAIAAARAEGATDTHIHDTVLIAAAFAMFNRYVNGLATDVPADPSFYDAAAELIVNHGYEAAR
>CP029188.1|AWI32752.1|7169599_7170925_-|MFS-transporter
MSQHQHSPAKAHRRAVTATVVGNFIESFDWLAYGLFAPLFAARFFPSDNSLTSILGVFAVLGVGVLMRPLGGILLGRYADRRGRRPALMLAISLMAGGSLLIGVTPTYAHIGLLAPCLLLVARMAQGVSHGGEWPAAAAYLMEVAPERRKSTYGSLFSLTTCAGAFTASLLGGGLTVALGPAAMAAWGWRVPFLVGGVLGLVLLVLRTRLTETEVFRREVRVRRDRGSLRQVLGTHRRRVLLAVLFVAGTGAVGGTWNAVVPALGGSLAPPGTMFWVVVCATAVLLVLNVPIGLLADKVGAARFLAVASVVFAVAGSVSYLTMTGTFASLLFTYGSGVVYLVCATTVLPKLLTEIFPAQVRALGIGLPNAVTSAVLGGLAPASAAFAAEHDASGWFIAGVMGAVLLAIPASVLSRTALPAPAPAAPGEVREDERNLVPSGG
>CP029188.1|AWI32751.1|7169220_7169508_+|DUF4287-domain-containing-protein
MSFQAYLDNIEDKTGLTPRQFMELAKERGFEGPDTKAGPVLEWLKQDYGLGRGHGMALVHVIKNGAKISDKHVGSGGTHHDDSDTLWLEGKNNRP
>CP029188.1|AWI32750.1|7167738_7168989_+|RNA-polymerase-subunit-sigma-24
MSGAHHGVEDLLRELAPQVLAVLVRRHGAFDTCEDAVQEALLAAALGWREAGVPDNPRGWLVTVASRKLVDQVRSDAARRRREETLALATPQSALLAPAADAVPASERDDSLALLFLCCHPSLSAPSRIALTLRAVGGLTTAQIAAAFLVPEATMAQRISRAKQTVRTAGADLTLPEGAMCAERLAAVRHVLYLIFNEGYTTTCGTELTAPELSTEAIRLTRLLHRLAPGDAETAGLLALMLMTDARRTARTGPHGELVPLGEQDRGRWDRRLIAEGVDLISRTLPCGRVGPYQLQAAIAAVHCEAAHPDSTDWPQILALYDLLERCGPNPVISLNRAVAVAMVQGPGAGLDLLAELERDKRMARHHRLVAARAHLLEMAGRHGAAARAYREAARLATSAPEQRHLTRRARLLERA
>CP029188.1|AWI32760.1|7176828_7177689_+|taurine-dioxygenase
MSLFDIRRIGGRIGAEVTGVDLSTALPDSVFRQIHEAFLEYKVLFFRDQEITDEHQLAFAGRFGPLTQTHPMMRTVDGTPQVIPVDGEDQRADHWHTDISFTTTPSLGTTLRSVVLPPYGGDTMVANAAAGYRDLPAELRGIADRLWAVHSNHAEQPRLGTERGEEVRAAFLARRFEAAHPVVRVHPESGEPSLFLGGFAQWLVGLEPRESRPIIDVLQGYVRRPENTARWSWRPGDVLIFDNRSTQHYAVNDYGRRRRVLHRVSVTGDVPVGLDGRTSYALKEGE
>CP029188.1|AWI32761.1|7177685_7178486_+|aldolase
MSTAPSPRRDPVSFAARLRGRDPLVGYWIALDNPAATERIAGLGYDYIGVDGQHGVLHQPGWQAAMLAVDARGRSAGVIRVPSPDPVAIGIALDTGARGVIVPMVESAEQARTAVRACRHHPAGTRSLGGPVRAELRLGSVPAEIDDRVACIVMIETAAALDDLEAICATEGIDAVYVGPADLSAALGARWFGDPAAADALAAALERITDAARRHGIACGIHVMDGESAAKRLAQGFTFATVSSDITHLQQAAAAHLAAARCLDAA
>CP029188.1|AWI32762.1|7178523_7179468_+|cysteine-synthase-A
MSPRPVRAAVAPPAGSLEDLVGRTPLMEVPLPGLAGSVRLLAKLEMANPLSSVKDRAALFMVRAAEASGELPATGGTVVECSSGSTGISLAALCARRGHRCVIVMPDNASEERRLLLAELGAEVHLVPHQDGLMAAWAYAEELQRALPGSWVPHQDRNPANVTAHYETTGPEIWEATAGRVDVLVCGVGTGGTLTGTARYLKERTALHVVAVEPARSAVLSGGEAGPHGIPGIGAGYVSDITDLSLVDEVVAVPDEAAAATTREIVRATGLTVGASSGAAAWASRAVTAHPRWAGATVVTVFPDSGERYLSTAR
>CP029188.1|AWI32763.1|7179499_7181362_+|asparagine-synthase-(glutamine-hydrolyzing)
MCRIFGYFNAVATPHEMRTVAALQRHGGPDATGVSRAPGWGLGNNRLAVVDLDGGDQPYGRGGPVQVVFNGEIYNHEELRRRLESLGHSVPDRCDGSVLPALYLEYGEEFTEHLDGMYALALLDARGEVPRLLLATDHLGMKPLYLRWDAACRSLRFSSELPALLGFGGVGGRVRESGLDAYLATRTPFGTRTVYEDVEVLQPGTTWVCELGGAPRVRRRPADAPAPAGDGGTAEAGDEGTAARRVRRALRSEVGRLLVADVPVALITSGGLDSGLVTALAAEHGPVHTFNIAYRGTWPFDERHFAREVAERARAVHHQVEIDPAAFPALLEETVWHLGQPNADPIALSTYALFRAVRDAGFTVALTGDAADEVFGGYERMRRAAERAAAGADWSAAYLDALSAAPAALRTSLYTDAYRAHVREDPALPEAVREDLLHGPGTVLDRITRFELENRLPAYHLRRVDHLSMASSVEARLPFCQRSVVALGRSLRDHQRIRDGRVKRTLYAAAAGLLPDRVLSRPKQPFTLPVTAMLRPGSTLWEYARDLLAPGRIAAAGRLDGQAVDALFASQAERPDDTAAMALWALLVHEVWEGQFRHTAGRPGSAETPAGGARPLAVAA
>CP029188.1|AWI32764.1|7181358_7182420_+|hypothetical-protein
MIGHLAYAAGSPCPTFVLDAGRLPRDEEALLAHLAEARRYLVSAGGAHVLKFALVEPSAHPMFDLDYRFVQALPGAPDRFDTRGSCGHSILAAVVAASRSGMLPRLVPGARIRVHVRNNGDSVVCEADRIERDEAGFTVTFVHPAPVPFPDLLPAGRPRTVLGSGGERAEVSLVASANAYAFVDARTLGVPDQAALFAAGQQLLDRLEGIRGAAADRLGWPRAGAFPKIAAVLPAERGGIAVRAVTVSGWHPSIALTGVVCLGSAARIPGTVPWRVAREHGAGDGPVDVFTPGGRTAVTAVTAAPGTAGGEGALLWATVARKRVTFQGSFVLAPLSHLQFEEVAKCLALSGAA
>CP029188.1|AWI32765.1|7182416_7183517_+|acyl-CoA-dehydrogenase
MRPLLTAELRARLSDSVEKSDAAGEPDPAALAALRASGLLGTAVPARHGGAGGDAVAVNRVVEELATLDPSMAIIAFQHFAVSARIAEWGSEEQRGRLLPRLADGTWLAASAWSEQGAGAAKRNLASTGGRLADGRWRLDGAKTFATGAGVADLYLVLVQTARPAATGEGYGADGQTFFLVESGNPGLVPDLGPDLAGMRGSATGLVALDGCLVPDRDRLGPEGGAAAVIAGVRESGASLGAVSVGIARAAFDLAVRHARGHGLLDLPTVRHRLVELATRLEAARAVVERAGARASADPGAATLHSKLHASVAAEEICLDAARMLGSAGYRAGDRIGRLLSDARGIAFMGPTNDLCRDLLAASWTG
>CP029188.1|AWI32766.1|7183504_7184944_+|dihydroorotase
MDRLTSVPDLATPVPDLVVSGRRLVTPQGVRRGHLLISGGRITAITDTDTAPASAGRLDAGDHYVLPGLVDSHVHFRTPGLTHKEDWEHGSRAAVRGGVTTVMDMPNTVPPTLAPETLLAKARQVAGRSLVDMRFHIGLDPARPELLADLDASVATSAKVFMAGHHTAPTVVRDPAALEKAFAAAAEGGVQLVLHAEDDGLFALLDAWWGEPGSYLEYERRRPRTGGIVAVAKVVELVRRYGTRAHILHLSSAEEADLVCAAQAAGYPVTFEVTGHHLSFTDDDTRRLGARTRLSPSIRGRADQDRLWRALVDGQLTTLGSDHAPHTVAEKTGTVAGSPPGLPGVQELAVAVWTGMRRRRPDEDPDTAATRLARHLSQRPAELFRLPGKGRIAPGADADLVVFAPDTPWMLSAHDVESKCGWSAYEGWTFTGRVERTLRAGRTVWDAASGTFGAYDGRLLPAADPVDTTNGAAPAAGEG
>CP029188.1|AWI32767.1|7184947_7186771_+|FAD-dependent-oxidoreductase
MVRRWSVVVAGGGVGGLAAAAGMAARGIDVTVVERAGQIGAGGSGLMIQPNGMRAADALGERIGARIRAVGHVTRPGEVRVLMDAEGTVLAEEPLGAAAGTPGDPPIPVLRSALHRALLDEALTAGAAVRLATPVETYTVRPGHVAVELSDGTTVDCDALVGADGIHSAVRARMLGDGPPQYRGYTSVRGRTTGSVLGQRGHVVNGRGIQLFIAPVGGDTLYWTAKITAPEGVWPAMGAAGARHALLAALEGWYPPVVDLVRDADPEDVVVTDIHDRDPSPRWVDGRVALLGDAAHPMVPALGQGANMALEDAAVLADALCSHTEIPAALAAYARERVDRAAAVVLASRRQGALDQGADRAGEERRNARMRSAGRKDAELADVLAWRPGPRRQQATAPAPPSTVRTAGEDSTMGAPRIVVISGSLRAGSTSDRVAAWCAHRCAEQGASARVFTGAEIDFPAYRPGLAGTHAAVADFLGALRRADGVILVSPTYHSTVSGLLKNALDYVNDIEGPVPYLEGRAIGTVAVGSAVQGAVSTLATLRTIGHALRGWPTPVGVAVAQAPEEPVPGAVEAAPDAARLVEMVGQVVWLGRARGAVLPEALGAVA
>CP029188.1|AWI32768.1|7186883_7187219_+|hypothetical-protein
MSAPSPEYHALTARLGPVWRDANIRSGPSLDSPVIRLVQPDASVSYESEGWSPGDEVVEDQHRDGVITSSVWFRLTAGGWSSAVNFEPVAVAGLLDRAVTVDARRPGRVVP
>CP029188.1|AWI32769.1|7187408_7188794_-|hypothetical-protein
MTPRPGALRLPRLTVDGERVPRAHLARLVARTTRELAAAGAGPGRAAALACDHPLTAVVAVLAAEAAGAPLLLDGPAPARRIAPAALVHAGRSGDPVVAGATARPLDVPEETAAVFWTSGSSGDPKAVAVPTAALAHQGGATAARMCVTADDRLLLPLPLRHAYGHSVLGVWRATGAHLYAESGFRLRGLLSRLAAEGITSLDGVPTMYRVLAAEAAKDPGAARLLRALRVRGCGGDVLTPALYDDFLAATGAPLHDGYGLSEAGPNVALSAPEVLRPGTVGRLLDGVRVRLAGPDREIQVDSPSLMLGYLDPATGALDRGAFTPDGWLRTGDTGAVTADGWLTVGGRVKEVLVVHGETVAPTVVEDAVRAADGVVDAAVVGVRRGDRGDRGDSVWAFVESPEADRATVAVRVTEACRRRLPPHARPRSVRVVAALPRTGSGKFDRVRLRAWASDATAAAA

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029188_9	9.1|1554596|19|CP029188|CRISPRCasFinder	1554596-1554614	19	CP029188.1	1554626-1554644	0	1.0
CP029188_23	23.1|4654260|33|CP029188|CRISPRCasFinder	4654260-4654292	33	CP029188.1	4654298-4654330	1	0.97
CP029188_28	28.1|6144304|18|CP029188|CRISPRCasFinder	6144304-6144321	18	CP029188.1	6280969-6280986	1	0.944
CP029188_1	1.1|579178|19|CP029188|CRISPRCasFinder	579178-579196	19	CP029188.1	1755181-1755199	2	0.895
CP029188_4	4.2|1187634|21|CP029188|CRISPRCasFinder	1187634-1187654	21	CP029188.1	2241833-2241853	2	0.905
CP029188_4	4.2|1187634|21|CP029188|CRISPRCasFinder	1187634-1187654	21	CP029188.1	3517073-3517093	2	0.905
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	CP029188.1	7030641-7030672	2	0.938

1. spacer 9.1|1554596|19|CP029188|CRISPRCasFinder matches to position: 1554626-1554644, mismatch: 0, identity: 1.0

aacacgagcacgcgcacca	CRISPR spacer
aacacgagcacgcgcacca	Protospacer
*******************

2. spacer 23.1|4654260|33|CP029188|CRISPRCasFinder matches to position: 4654298-4654330, mismatch: 1, identity: 0.97

ttccggggtccggtcggtgttgcgcggccccgg	CRISPR spacer
ttccgcggtccggtcggtgttgcgcggccccgg	Protospacer
***** ***************************

3. spacer 28.1|6144304|18|CP029188|CRISPRCasFinder matches to position: 6280969-6280986, mismatch: 1, identity: 0.944

gtccccccgcccccgcag	CRISPR spacer
gtccccccgcctccgcag	Protospacer
***********.******

4. spacer 1.1|579178|19|CP029188|CRISPRCasFinder matches to position: 1755181-1755199, mismatch: 2, identity: 0.895

cgcatggccgcccgtctgc	CRISPR spacer
cgcctggctgcccgtctgc	Protospacer
*** ****.**********

5. spacer 4.2|1187634|21|CP029188|CRISPRCasFinder matches to position: 2241833-2241853, mismatch: 2, identity: 0.905

ccggggccgggcggccccggt	CRISPR spacer
ccggggccggccggcccccgt	Protospacer
********** ******* **

6. spacer 4.2|1187634|21|CP029188|CRISPRCasFinder matches to position: 3517073-3517093, mismatch: 2, identity: 0.905

ccggggccgggcggccccggt	CRISPR spacer
ccggggccgggcggggccggt	Protospacer
**************  *****

7. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to position: 7030641-7030672, mismatch: 2, identity: 0.938

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
cattcggtccagggcatcccggccgggcgggt	Protospacer
***.***********.****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029188_26	26.1|5076117|34|CP029188|CRISPRCasFinder	5076117-5076150	34	NC_016972	Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence	18-51	1	0.971
CP029188_4	4.2|1187634|21|CP029188|CRISPRCasFinder	1187634-1187654	21	NC_004808	Streptomyces rochei plasmid pSLA2-L DNA, complete sequence	89384-89404	2	0.905
CP029188_5	5.4|1318699|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318699-1318730	32	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	144838-144869	4	0.875
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	531282-531313	5	0.844
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1148318-1148349	5	0.844
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	664840-664871	5	0.844
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP011808	Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence	76942-76973	6	0.812
CP029188_5	5.2|1318577|32|CP029188|CRISPRCasFinder,CRT	1318577-1318608	32	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	2439398-2439429	6	0.812
CP029188_5	5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319370-1319401	32	KU356689	Pseudomonas phage ZC01, complete genome	15621-15652	6	0.812
CP029188_5	5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319370-1319401	32	NC_042115	Pseudomonas phage vB_PaeS_PAO1_Ab19, complete genome	15772-15803	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP018471	Xanthomonas vesicatoria strain LM159 plasmid pLM159.2, complete sequence	47391-47422	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_KJ588780	Achromobacter xylosoxidans strain A22732 plasmid pA22732-IMP, complete sequence	31378-31409	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_KP289281	Pseudomonas sp. EGD-AKN5 plasmid unnamed, complete sequence	14233-14264	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_MN366359	Bacterium plasmid pALTS31, complete sequence	28971-29002	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_001735	Enterobacter aerogenes plasmid R751, complete sequence	49319-49350	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP015373	Pandoraea pnomenusa strain MCB032 plasmid unnamed 2, complete sequence	35132-35163	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	AGRM01000006	Salmonella enterica subsp. houtenae str. ATCC BAA-1581 plasmid pSEHO0A1, complete sequence, whole genome shotgun sequence	24158-24189	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_017908	Mycobacterium abscessus subsp. bolletii F1725 plasmid BRA100, complete sequence	29093-29124	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	AJ863570	Uncultured bacterium IncP-1beta multiresistance plasmid pB8	43910-43941	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	KU238092	Uncultured bacterium plasmid pDTC28, complete sequence	28089-28120	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JX469834	Uncultured bacterium plasmid pDS3, complete sequence	26718-26749	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JX469831	Uncultured bacterium plasmid pKSP212, complete sequence	33560-33591	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106172	Uncultured bacterium plasmid pAKD29, complete sequence	26557-26588	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106173	Uncultured bacterium plasmid pAKD31, complete sequence	27735-27766	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106174	Uncultured bacterium plasmid pAKD33, complete sequence	27738-27769	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_004956	Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence	14233-14264	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106164	Uncultured bacterium plasmid pAKD1, complete sequence	39885-39916	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106165	Uncultured bacterium plasmid pAKD14, complete sequence	27735-27766	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106166	Uncultured bacterium plasmid pAKD15, complete sequence	27735-27766	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106168	Uncultured bacterium plasmid pAKD17, complete sequence	27735-27766	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JN106169	Uncultured bacterium plasmid pAKD18, complete sequence	27720-27751	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_014911	Alicycliphilus denitrificans BC plasmid pALIDE02, complete sequence	10303-10334	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	MN386974	Pseudomonas aeruginosa strain 1943 plasmid pPaeBURNS1, complete sequence	35912-35943	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	MG879028	Uncultured bacterium plasmid pEG1-1, complete sequence	59943-59974	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP021650	Acidovorax sp. T1 plasmid p2-T1, complete sequence	10040-10071	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	KF743817	Proteus mirabilis plasmid R772, complete sequence	26650-26681	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	KF743818	Bordetella bronchiseptica plasmid R906, complete sequence	28868-28899	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	JX486125	Uncultured bacterium plasmid pRWC72a, complete sequence	38445-38476	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP019238	Rhodoferax koreense strain DCY-110 plasmid unnamed2	38987-39018	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP038640	Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence	62090-62121	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	KC170279	Uncultured bacterium plasmid pMBUI8, complete sequence	38704-38735	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	KU356987	Variovorax paradoxus plasmid pBS64, complete sequence	44135-44166	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	KU356988	Variovorax paradoxus plasmid pHB44, complete sequence	42840-42871	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP009797	Burkholderia ambifaria AMMD plasmid pBII_1, complete sequence	29475-29506	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_013176	Pseudomonas putida plasmid pW2, complete sequence	22852-22883	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_019312	Delftia sp. KV29 plasmid pKV29, complete sequence	23731-23762	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_019320	Variovorax sp. DB1 plasmid pDB1, complete sequence	61164-61195	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP017455	Dickeya solani strain PPO 9019 plasmid unnamed, complete sequence	36566-36597	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_021077	Comamonas sp. 7D-2 plasmid pBHB, complete sequence	92681-92712	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_007337	Cupriavidus pinatubonensis JMP134 plasmid 1, complete sequence	83583-83614	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_024998	Acidovorax avenae subsp. avenae plasmid pAAA83 DNA, complete sequence, strain: 83	11663-11694	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_MH053445	Pseudomonas aeruginosa strain PA1280 plasmid pICP-4GES, complete sequence	22876-22907	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_005088	Delftia acidovorans B plasmid pUO1, complete sequence	54365-54396	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_008385	Burkholderia ambifaria AMMD plasmid unnamed1, complete sequence	16955-16986	6	0.812
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	543640-543671	6	0.812
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP033968	Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence	184304-184335	6	0.812
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP037902	Cupriavidus metallidurans strain BS1 plasmid p1, complete sequence	143843-143874	6	0.812
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	453062-453093	6	0.812
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	587014-587045	6	0.812
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	136756-136787	6	0.812
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_CP040822	Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence	55937-55968	6	0.812
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_KX443399	Rhodococcus hoagii strain PAM1354 plasmid pVAPA1354, complete sequence	85096-85127	6	0.812
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_KX443400	Rhodococcus hoagii strain PAM1557 plasmid pVAPN1557, complete sequence	85121-85152	6	0.812
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_KX443398	Rhodococcus hoagii strain PAM1204 plasmid pVAPN1204, complete sequence	85118-85149	6	0.812
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_KP851975	Rhodococcus hoagii strain PAM2012 plasmid pVAPN2012, complete sequence	85234-85265	6	0.812
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_KF439868	Rhodococcus hoagii strain PAM1571 plasmid pVAPN1571, complete sequence	84246-84277	6	0.812
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP041045	Paracoccus sp. AK26 plasmid pAK1, complete sequence	274462-274493	6	0.812
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	134240-134271	6	0.812
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	155266-155297	6	0.812
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	81173-81204	6	0.812
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NC_017588	Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence	72045-72076	6	0.812
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	207583-207615	6	0.818
CP029188_22	22.1|4570672|27|CP029188|CRISPRCasFinder	4570672-4570698	27	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	247439-247465	6	0.778
CP029188_22	22.1|4570672|27|CP029188|CRISPRCasFinder	4570672-4570698	27	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	277186-277212	6	0.778
CP029188_4	4.1|1187576|35|CP029188|CRISPRCasFinder	1187576-1187610	35	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	224453-224487	7	0.8
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP049751	Rhodococcus fascians A21d2 plasmid unnamed2, complete sequence	9485-9516	7	0.781
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1729777-1729808	7	0.781
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_LN832562	Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence	326815-326846	7	0.781
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	MK937606	Microbacterium phage Margaery, complete genome	13423-13454	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	MT553337	Mycobacterium phage DroogsArmy, complete genome	13158-13189	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	MG793454	Mycobacterium phage SWU2, complete genome	12666-12697	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	JF957060	Mycobacterium phage Timshel, complete genome	13397-13428	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1060685-1060716	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP034431	Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence	129426-129457	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	777307-777338	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	412814-412845	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_AP014659	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence	72937-72968	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	13951-13982	7	0.781
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	736368-736399	7	0.781
CP029188_5	5.8|1318943|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318943-1318974	32	NC_022739	Pseudomonas sp. VLB120 plasmid pSTY, complete sequence	38111-38142	7	0.781
CP029188_5	5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319309-1319340	32	NZ_CP047181	Rathayibacter festucae strain VKM Ac-2802 plasmid unnamed1, complete sequence	11176-11207	7	0.781
CP029188_5	5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319309-1319340	32	NZ_CP033726	Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM2U-F1, complete sequence	70653-70684	7	0.781
CP029188_5	5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319309-1319340	32	NZ_CP047184	Rathayibacter sp. VKM Ac-2801 plasmid unnamed, complete sequence	4657-4688	7	0.781
CP029188_5	5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319309-1319340	32	NZ_CP047177	Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence	59674-59705	7	0.781
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_008537	Arthrobacter sp. FB24 plasmid 1, complete sequence	56384-56415	7	0.781
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1225231-1225262	7	0.781
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	10786-10817	7	0.781
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NC_010474	Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequence	124541-124572	7	0.781
CP029188_6	6.2|1329107|32|CP029188|CRISPRCasFinder,CRT	1329107-1329138	32	NZ_CP009637	Bacillus cereus 03BB108 plasmid pBFI_5, complete sequence	17834-17865	7	0.781
CP029188_6	6.2|1329107|32|CP029188|CRISPRCasFinder,CRT	1329107-1329138	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2335882-2335913	7	0.781
CP029188_6	6.2|1329107|32|CP029188|CRISPRCasFinder,CRT	1329107-1329138	32	NZ_CP053964	Bacillus cereus strain FDAARGOS_802 plasmid unnamed4, complete sequence	17854-17885	7	0.781
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1688698-1688729	7	0.781
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1619976-1620007	7	0.781
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	MK937598	Microbacterium phage Celaena, complete genome	2953-2984	7	0.781
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	982070-982101	7	0.781
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	831055-831086	7	0.781
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NZ_CP051471	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10B, complete sequence	107330-107361	7	0.781
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NZ_CP030274	Rhodobacter sphaeroides 2.4.1 plasmid pB, complete sequence	14623-14654	7	0.781
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	CP047034	Rhodobacter sphaeroides strain DSM 158 plasmid pB, complete sequence	98602-98633	7	0.781
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NZ_CP015291	Rhodobacter sphaeroides strain MBTLJ-20 plasmid c, complete sequence	112915-112946	7	0.781
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NZ_CP047040	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pB, complete sequence	98524-98555	7	0.781
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NC_011962	Rhodobacter sphaeroides KD131 plasmid pRSKD131A, complete sequence	7631-7662	7	0.781
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NZ_CP015215	Rhodobacter sphaeroides strain MBTLJ-13 plasmid d, complete sequence	92616-92647	7	0.781
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	KC292022	Halovirus HRTV-5, complete genome	45071-45102	7	0.781
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	AY190604	Halovirus HF1, complete genome	32237-32268	7	0.781
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NC_003345	Halorubrum phage HF2, complete genome	32237-32268	7	0.781
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	45087-45118	7	0.781
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	563614-563645	7	0.781
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_AP014802	Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351	88588-88619	7	0.781
CP029188_6	6.16|1329961|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329961-1329992	32	NZ_CP015170	Acetobacter ascendens strain LMG 1591 plasmid unnamed2, complete sequence	91442-91473	7	0.781
CP029188_6	6.19|1330144|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330144-1330175	32	MK977705	Gordonia Phage Mollymur, complete genome	42131-42162	7	0.781
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NC_013193	Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence	159494-159525	7	0.781
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	1551651-1551682	7	0.781
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_HG938356	Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence	247733-247764	7	0.781
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1503390-1503421	7	0.781
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_LR134469	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 27, complete sequence	119494-119526	7	0.788
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP040764	Paracoccus sp. 2251 plasmid unnamed3, complete sequence	138079-138111	7	0.788
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	853627-853659	7	0.788
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	336654-336686	7	0.788
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP035424	Leisingera sp. NJS204 plasmid unnamed7, complete sequence	36537-36569	7	0.788
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP038236	Leisingera sp. NJS201 plasmid unnamed2, complete sequence	8019-8051	7	0.788
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	376787-376819	7	0.788
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	240594-240625	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	158473-158504	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP017148	Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence	22885-22916	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NC_047824	Shewanella phage SppYZU05, complete genome	1844-1875	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NC_007765	Rhizobium etli CFN 42 plasmid p42e, complete sequence	438328-438359	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP020909	Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence	439071-439102	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NC_021908	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence	445041-445072	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	HM486077	Tsukamurella phage TPA2, complete sequence	46201-46232	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NC_015210	Tsukamurella phage TPA2, complete genome	46201-46232	8	0.75
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	KY092480	Streptomyces phage Picard, complete genome	6485-6516	8	0.75
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	443367-443398	8	0.75
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	NZ_CP025805	Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence	54392-54423	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NC_015377	Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence	123452-123483	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1653201-1653232	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1653338-1653369	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	343432-343463	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	367362-367393	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1533690-1533721	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1652915-1652946	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1652861-1652892	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	365005-365036	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	MH588547	Caulobacter phage CcrSC, complete genome	116958-116989	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP011667	Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence	87124-87155	8	0.75
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP035514	Haematobacter massiliensis strain OT1 plasmid pOT1-4, complete sequence	145261-145292	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	214619-214650	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1527214-1527245	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1491906-1491937	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	214375-214406	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1593444-1593475	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1449702-1449733	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	209750-209781	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	208439-208470	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1095998-1096029	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	475735-475766	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	552898-552929	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	459562-459593	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1217015-1217046	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	88387-88418	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	755387-755418	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	997233-997264	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	807355-807386	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	362948-362979	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	213537-213568	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	59937-59968	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1420900-1420931	8	0.75
CP029188_5	5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319004-1319035	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1527228-1527259	8	0.75
CP029188_5	5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319187-1319218	32	NZ_CP049750	Rhodococcus fascians A21d2 plasmid unnamed1	47449-47480	8	0.75
CP029188_5	5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319187-1319218	32	NZ_CP020883	Xanthomonas citri pv. citri strain TX160042 plasmid unnamed1, complete sequence	105360-105391	8	0.75
CP029188_5	5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319187-1319218	32	NZ_CP020886	Xanthomonas citri pv. citri strain TX160149 plasmid unnamed1, complete sequence	69033-69064	8	0.75
CP029188_5	5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319187-1319218	32	NZ_CP021016	Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6991 plasmid pF, complete sequence	24609-24640	8	0.75
CP029188_5	5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319187-1319218	32	NZ_CP020890	Xanthomonas citri pv. citri strain TX160197 plasmid unnamed1, complete sequence	21140-21171	8	0.75
CP029188_5	5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319370-1319401	32	NC_016972	Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence	46505-46536	8	0.75
CP029188_5	5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319370-1319401	32	MN586022	Gordonia phage Chidiebere, complete genome	83643-83674	8	0.75
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NC_023283	Streptomyces sp. FR1 plasmid pFRL3, complete sequence	263027-263058	8	0.75
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	292424-292455	8	0.75
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	1241276-1241307	8	0.75
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	1242275-1242306	8	0.75
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	62533-62564	8	0.75
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP043044	Gluconobacter thailandicus strain HD924 plasmid unnamed1, complete sequence	63587-63618	8	0.75
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP016482	Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence	46842-46873	8	0.75
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_KX443399	Rhodococcus hoagii strain PAM1354 plasmid pVAPA1354, complete sequence	52516-52547	8	0.75
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_KX443400	Rhodococcus hoagii strain PAM1557 plasmid pVAPN1557, complete sequence	52462-52493	8	0.75
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	131856-131887	8	0.75
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	MH271296	Gordonia phage Emperor, complete genome	2640-2671	8	0.75
CP029188_6	6.2|1329107|32|CP029188|CRISPRCasFinder,CRT	1329107-1329138	32	NZ_CP042998	Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence	112242-112273	8	0.75
CP029188_6	6.2|1329107|32|CP029188|CRISPRCasFinder,CRT	1329107-1329138	32	NZ_CP011274	Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence	71468-71499	8	0.75
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NC_015314	Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence	34193-34224	8	0.75
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NZ_CP040824	Paraoceanicella profunda strain D4M1 plasmid pD4M1F, complete sequence	92944-92975	8	0.75
CP029188_6	6.6|1329351|32|CP029188|CRISPRCasFinder,CRT	1329351-1329382	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	815259-815290	8	0.75
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	575499-575530	8	0.75
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1237569-1237600	8	0.75
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	605090-605121	8	0.75
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MH727553	Mycobacterium phage LittleLaf, complete genome	45651-45682	8	0.75
CP029188_6	6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329595-1329626	32	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	210985-211016	8	0.75
CP029188_6	6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329595-1329626	32	NZ_CP018322	Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence	183475-183506	8	0.75
CP029188_6	6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329717-1329748	32	MK411746	Arthrobacter phage Sonali, complete genome	57011-57042	8	0.75
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	83124-83155	8	0.75
CP029188_6	6.19|1330144|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330144-1330175	32	MT657339	Gordonia phage SpeedDemon, complete genome	43310-43341	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	124850-124881	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2044790-2044821	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1582514-1582545	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NC_019388	Thermus oshimai JL-2 plasmid pTHEOS02, complete sequence	15963-15994	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NZ_CP010825	Thermus aquaticus Y51MC23 plasmid pTA69, complete sequence	53212-53243	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	224774-224805	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	MH834619	Arthrobacter phage Maureen, complete genome	10071-10102	8	0.75
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NC_048115	Arthrobacter phage Liebe, complete genome	10071-10102	8	0.75
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	514449-514480	8	0.75
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_CP044333	Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence	146150-146181	8	0.75
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	355244-355275	8	0.75
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_CP014310	Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence	396737-396768	8	0.75
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_CP038257	Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence	37316-37347	8	0.75
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	396829-396861	8	0.758
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	728354-728386	8	0.758
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	341394-341426	8	0.758
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1830931-1830963	8	0.758
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	588450-588482	8	0.758
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	156039-156071	8	0.758
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP016620	Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence	393618-393650	8	0.758
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1543552-1543584	8	0.758
CP029188_21	21.1|4350887|33|CP029188|CRISPRCasFinder	4350887-4350919	33	MK305888	Streptomyces phage Austintatious, complete genome	28773-28805	8	0.758
CP029188_21	21.1|4350887|33|CP029188|CRISPRCasFinder	4350887-4350919	33	KY092481	Streptomyces phage PapayaSalad, complete genome	31370-31402	8	0.758
CP029188_26	26.1|5076117|34|CP029188|CRISPRCasFinder	5076117-5076150	34	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	707026-707059	8	0.765
CP029188_26	26.1|5076117|34|CP029188|CRISPRCasFinder	5076117-5076150	34	NZ_CP006257	Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence	9650-9683	8	0.765
CP029188_26	26.1|5076117|34|CP029188|CRISPRCasFinder	5076117-5076150	34	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	170342-170375	8	0.765
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	570602-570633	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	702174-702205	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	470054-470085	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	372632-372663	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	514004-514035	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	480317-480348	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	32694-32725	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	420393-420424	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP011667	Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence	111744-111775	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP033583	Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence	130604-130635	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	157256-157287	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	312124-312155	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1804336-1804367	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	479101-479132	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	KY092482	Streptomyces phage Mojorita, complete genome	6485-6516	9	0.719
CP029188_5	5.1|1318516|32|CP029188|CRISPRCasFinder,CRT	1318516-1318547	32	JX182371	Streptomyces phage SV1, complete genome	6278-6309	9	0.719
CP029188_5	5.2|1318577|32|CP029188|CRISPRCasFinder,CRT	1318577-1318608	32	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	272773-272804	9	0.719
CP029188_5	5.2|1318577|32|CP029188|CRISPRCasFinder,CRT	1318577-1318608	32	NZ_CP034352	Streptomyces sp. W1SF4 plasmid p2, complete sequence	289059-289090	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	11333-11364	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	MK416009	Klebsiella phage ST11-OXA245phi3.1, complete genome	14136-14167	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	MK422449	Klebsiella phage ST512-KPC3phi13.2, complete genome	13112-13143	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	MK416020	Klebsiella phage ST11-VIM1phi8.4, complete genome	18850-18881	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	17508-17539	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	MK433580	Klebsiella phage ST11-OXA48phi15.3, complete genome	19160-19191	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	MK422454	Klebsiella phage ST340-VIM1phi10.2, complete genome	14136-14167	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	NC_049449	Klebsiella phage ST437-OXA245phi4.2, complete genome	4115-4146	9	0.719
CP029188_5	5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318760-1318791	32	MK433582	Klebsiella phage ST258-KPC3phi16.2, complete genome	19160-19191	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	210629-210660	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	207779-207810	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	175037-175068	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP048631	Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence	41664-41695	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP022370	Bosea sp. AS-1 plasmid unnamed1, complete sequence	30084-30115	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1637678-1637709	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	150761-150792	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	500887-500918	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	1801993-1802024	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	288030-288061	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	282363-282394	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	745578-745609	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	83320-83351	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	128917-128948	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	151278-151309	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	151278-151309	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	151278-151309	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	151278-151309	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	564745-564776	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	151278-151309	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1945968-1945999	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1945968-1945999	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NC_014458	Mycobacterium phage Angelica, complete genome	793-824	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	MG962364	Mycobacterium phage Deby, complete genome	793-824	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	MF074189	Sinorhizobium phage phiM5, complete genome	13206-13237	9	0.719
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	MF919532	Mycobacterium phage Sulley, complete genome	793-824	9	0.719
CP029188_5	5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319187-1319218	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	117430-117461	9	0.719
CP029188_5	5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319187-1319218	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	117377-117408	9	0.719
CP029188_5	5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319248-1319279	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	858301-858332	9	0.719
CP029188_5	5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319248-1319279	32	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	794972-795003	9	0.719
CP029188_5	5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319248-1319279	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	248804-248835	9	0.719
CP029188_5	5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319248-1319279	32	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	473858-473889	9	0.719
CP029188_5	5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319248-1319279	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	257892-257923	9	0.719
CP029188_5	5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319248-1319279	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	574749-574780	9	0.719
CP029188_5	5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319309-1319340	32	MK977696	Gordonia phage SCentae, complete genome	7847-7878	9	0.719
CP029188_5	5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319309-1319340	32	MK977695	Gordonia phage Pupper, complete genome	7848-7879	9	0.719
CP029188_5	5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319370-1319401	32	MH992131	UNVERIFIED: Thermus phage TSP4, complete genome	38539-38570	9	0.719
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	884148-884179	9	0.719
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	742774-742805	9	0.719
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	716676-716707	9	0.719
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	445106-445137	9	0.719
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	11755-11786	9	0.719
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NZ_CP017300	Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence	102783-102814	9	0.719
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2713279-2713310	9	0.719
CP029188_5	5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319492-1319523	32	NZ_CP034154	Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence	178443-178474	9	0.719
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1118091-1118122	9	0.719
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1131318-1131349	9	0.719
CP029188_6	6.2|1329107|32|CP029188|CRISPRCasFinder,CRT	1329107-1329138	32	NZ_CP017944	Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence	70877-70908	9	0.719
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2945676-2945707	9	0.719
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NZ_CP029094	Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence	330039-330070	9	0.719
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	NZ_CP027170	Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence	28903-28934	9	0.719
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	223928-223959	9	0.719
CP029188_6	6.5|1329290|32|CP029188|CRISPRCasFinder,CRT	1329290-1329321	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	310616-310647	9	0.719
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_LR134469	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 27, complete sequence	36811-36842	9	0.719
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NC_010865	Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence	105182-105213	9	0.719
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_CP021216	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence	134789-134820	9	0.719
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	158772-158803	9	0.719
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_CP020556	Streptomyces sp. Sge12 plasmid pSGE, complete sequence	125429-125460	9	0.719
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	31718-31749	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	NZ_KY454639	Klebsiella pneumoniae strain INF167 plasmid INF167_p0001, complete sequence	34586-34617	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	NZ_CP027063	Klebsiella variicola strain WCHKV030666 plasmid pVir_030666, complete sequence	139113-139144	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	NZ_CP031790	Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed1, complete sequence	103974-104005	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	NZ_CP019161	Klebsiella pneumoniae strain GN-2 plasmid pGN-2, complete sequence	74069-74100	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	NZ_CP015754	Klebsiella pneumoniae strain W14 plasmid unnamed1, complete sequence	52542-52573	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	NZ_CP026161	Klebsiella pneumoniae strain F93-1 plasmid pF93-1_1, complete sequence	106489-106520	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	NZ_CP016160	Klebsiella pneumoniae strain TH1 isolate TH1 plasmid unnamed1, complete sequence	80431-80462	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MN329674	Mycobacterium phage JoieB, complete genome	45825-45856	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MK494123	Mycobacterium phage Blackbeetle, complete genome	45238-45269	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MN428061	Mycobacterium phage Corazon, complete genome	45751-45782	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MG757167	Mycobacterium phage Tesla, complete genome	45032-45063	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MH727562	Mycobacterium phage VasuNzinga, complete genome	45121-45152	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MK305892	Mycobacterium phage RedRaider77, complete genome	45183-45214	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	KJ538721	Mycobacterium phage MosMoris, complete genome	45342-45373	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	JF704100	Mycobacterium phage Marvin, complete sequence	45447-45478	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MN428056	Mycobacterium phage Pringar, complete genome	45163-45194	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MK279842	Mycobacterium phage Raela, complete genome	45789-45820	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MK061407	Mycobacterium phage Beelzebub, complete genome	45877-45908	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	MN329676	Mycobacterium phage Poise, complete genome	45238-45269	9	0.719
CP029188_6	6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329534-1329565	32	KX159477	Mycobacterium phage Gattaca, complete genome	45336-45367	9	0.719
CP029188_6	6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329595-1329626	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	659782-659813	9	0.719
CP029188_6	6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329595-1329626	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	542465-542496	9	0.719
CP029188_6	6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329717-1329748	32	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	106992-107023	9	0.719
CP029188_6	6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329717-1329748	32	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	148867-148898	9	0.719
CP029188_6	6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329717-1329748	32	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	10867-10898	9	0.719
CP029188_6	6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329717-1329748	32	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	274102-274133	9	0.719
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	817206-817237	9	0.719
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	648516-648547	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NC_014818	Asticcacaulis excentricus CB 48 plasmid pASTEX01, complete sequence	78454-78485	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	95200-95231	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	310390-310421	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	386964-386995	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	205155-205186	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	296077-296108	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP010857	Marinovum algicola DG 898 plasmid pMaD2, complete sequence	36897-36928	9	0.719
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	CP058906	Micromonospora phage pMLP1, complete sequence	31762-31793	9	0.719
CP029188_6	6.18|1330083|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330083-1330114	32	NC_006569	Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence	153432-153463	9	0.719
CP029188_6	6.18|1330083|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330083-1330114	32	NZ_AP022338	Mameliella alba strain KU6B plasmid pKUB257, complete sequence	89526-89557	9	0.719
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	112652-112683	9	0.719
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NZ_CP033033	Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence	80408-80439	9	0.719
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	261774-261805	9	0.719
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	259285-259316	9	0.719
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	724284-724316	9	0.727
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1413498-1413530	9	0.727
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	68187-68219	9	0.727
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP024583	Roseomonas sp. FDAARGOS_362 plasmid unnamed2, complete sequence	163120-163152	9	0.727
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	88212-88244	9	0.727
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP010826	Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence	7812-7844	9	0.727
CP029188_23	23.1|4654260|33|CP029188|CRISPRCasFinder	4654260-4654292	33	NC_030916	Tsukamurella phage TPA4, complete genome	48837-48869	9	0.727
CP029188_5	5.2|1318577|32|CP029188|CRISPRCasFinder,CRT	1318577-1318608	32	NZ_CP019608	Tessaracoccus flavescens strain SST-39T plasmid unnamed, complete sequence	728-759	10	0.688
CP029188_5	5.2|1318577|32|CP029188|CRISPRCasFinder,CRT	1318577-1318608	32	NZ_AP022334	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence	4507-4538	10	0.688
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP020444	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence	7539-7570	10	0.688
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1339562-1339593	10	0.688
CP029188_5	5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319431-1319462	32	NZ_CP034087	Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence	245222-245253	10	0.688
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	NZ_CP014277	Martelella sp. AD-3 plasmid unnamed2, complete sequence	143588-143619	10	0.688
CP029188_5	5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1319553-1319584	32	MN504636	Pseudomonas phage Quinobequin-P09, complete genome	4272-4303	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	630809-630840	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	417796-417827	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	748405-748436	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_KJ599675	Micrococcus sp. A7 plasmid pLMA7, complete sequence	43297-43328	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP025617	Micrococcus luteus strain SGAir0127 plasmid pSGAir0127	37979-38010	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	107387-107418	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	356184-356215	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_KR152226	Micrococcus sp. MG-2010-D12 plasmid pJD12, complete sequence	44152-44183	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	395011-395042	10	0.688
CP029188_6	6.3|1329168|32|CP029188|CRISPRCasFinder,CRT	1329168-1329199	32	NC_024972	Micrococcus sp. A1 plasmid pLMA1, complete sequence	56554-56585	10	0.688
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1694974-1695005	10	0.688
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	118287-118318	10	0.688
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1539615-1539646	10	0.688
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	CP054928	Streptomyces fulvissimus strain NA06532 plasmid unnamed2, complete sequence	27318-27349	10	0.688
CP029188_6	6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329473-1329504	32	NZ_CP023040	Komagataeibacter saccharivorans strain CV1 plasmid unnamed4, complete sequence	15304-15335	10	0.688
CP029188_6	6.11|1329656|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329656-1329687	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	243086-243117	10	0.688
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP032181	Citrobacter freundii strain AR_0116 plasmid unnamed3, complete sequence	80234-80265	10	0.688
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NC_017966	Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence	7851-7882	10	0.688
CP029188_6	6.18|1330083|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330083-1330114	32	MT855965	Microcystis phage vB_MaeS-yong1, complete genome	25538-25569	10	0.688
CP029188_6	6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330205-1330236	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	222231-222262	10	0.688
CP029188_6	6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1330266-1330297	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	159781-159812	10	0.688
CP029188_15	15.1|2569532|35|CP029188|CRISPRCasFinder	2569532-2569566	35	NZ_CP031957	Phaeobacter sp. LSS9 plasmid unnamed1, complete sequence	117795-117829	10	0.714
CP029188_15	15.1|2569532|35|CP029188|CRISPRCasFinder	2569532-2569566	35	NZ_CP010717	Phaeobacter piscinae strain P18 plasmid pP18_b, complete sequence	126264-126298	10	0.714
CP029188_15	15.1|2569532|35|CP029188|CRISPRCasFinder	2569532-2569566	35	NZ_CP010657	Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence	124865-124899	10	0.714
CP029188_15	15.1|2569532|35|CP029188|CRISPRCasFinder	2569532-2569566	35	NZ_CP010768	Phaeobacter piscinae strain P13 plasmid pP13_a, complete sequence	124850-124884	10	0.714
CP029188_15	15.1|2569532|35|CP029188|CRISPRCasFinder	2569532-2569566	35	NZ_CP010644	Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence	179405-179439	10	0.714
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1702914-1702946	10	0.697
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	77434-77466	10	0.697
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	132663-132695	10	0.697
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	308577-308609	10	0.697
CP029188_20	20.1|3913141|33|CP029188|CRISPRCasFinder	3913141-3913173	33	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	675980-676012	10	0.697
CP029188_5	5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1318882-1318913	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	264552-264583	11	0.656
CP029188_6	6.4|1329229|32|CP029188|CRISPRCasFinder,CRT	1329229-1329260	32	KP027201	Mycobacterium phage Sbash, complete genome	20390-20421	11	0.656
CP029188_6	6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329778-1329809	32	NZ_LR134468	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence	94967-94998	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	382185-382216	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	403420-403451	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	519758-519789	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP029830	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence	316520-316551	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	517209-517240	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	247642-247673	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	104999-105030	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	217221-217252	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	NC_026585	Mycobacteriophage Estave1, complete genome	43791-43822	11	0.656
CP029188_6	6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329839-1329870	32	KY385384	Mycobacterium phage SimranZ1, complete genome	42884-42915	11	0.656
CP029188_6	6.16|1329961|32|CP029188|CRISPRCasFinder,CRT,PILER-CR	1329961-1329992	32	NZ_CP027671	Simplicispira suum strain SC1-8 plasmid unnamed2, complete sequence	31372-31403	11	0.656

1. spacer 26.1|5076117|34|CP029188|CRISPRCasFinder matches to NC_016972 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence) position: , mismatch: 1, identity: 0.971

gcctggcgtcccgcgcttgcgcgggatggtctgg	CRISPR spacer
gcctggcgtcccgcgctcgcgcgggatggtctgg	Protospacer
*****************.****************

2. spacer 4.2|1187634|21|CP029188|CRISPRCasFinder matches to NC_004808 (Streptomyces rochei plasmid pSLA2-L DNA, complete sequence) position: , mismatch: 2, identity: 0.905

ccggggccgggcggccccggt	CRISPR spacer
gtggggccgggcggccccggt	Protospacer
 .*******************

3. spacer 5.4|1318699|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 4, identity: 0.875

ccgacgccgttcccgacctcgcagggcatgac	CRISPR spacer
tcgacgccgtccccgacctcgccgggcatgtc	Protospacer
.*********.*********** ******* *

4. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 5, identity: 0.844

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
agcagggccggaccatcgaccgcatggcccag	Protospacer
********.***** **************  .

5. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 5, identity: 0.844

-catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
ccctcccgccc-gggcgtcccggcccggcgggt	Protospacer
 * *** *.** ************* *******

6. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 5, identity: 0.844

-catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
ccctcccgccc-gggcgtcccggcccggcgggt	Protospacer
 * *** *.** ************* *******

7. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP011808 (Pandoraea faecigallinarum strain DSM 23572 plasmid pPF72-1, complete sequence) position: , mismatch: 6, identity: 0.812

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
ggcgaaaacgtcggcctcgccgtcctcgagcg	Protospacer
** *  * *****.*******.**********

8. spacer 5.2|1318577|32|CP029188|CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 6, identity: 0.812

tctgggagc-acgccgtgaagctcgcggcggac	CRISPR spacer
-gtgccagcgacgtcgtgaagctcgcggccgac	Protospacer
  **  *** ***.*************** ***

9. spacer 5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KU356689 (Pseudomonas phage ZC01, complete genome) position: , mismatch: 6, identity: 0.812

-gccgccatgcgggagcagggcgacctcctcga	CRISPR spacer
cagcgcca-gcgggagccgggcgtcctcctcgg	Protospacer
 . ***** ******** ***** ********.

10. spacer 5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_042115 (Pseudomonas phage vB_PaeS_PAO1_Ab19, complete genome) position: , mismatch: 6, identity: 0.812

-gccgccatgcgggagcagggcgacctcctcga	CRISPR spacer
cagcgcca-gcgggagccgggcgtcctcctcgg	Protospacer
 . ***** ******** ***** ********.

11. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018471 (Xanthomonas vesicatoria strain LM159 plasmid pLM159.2, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

12. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KJ588780 (Achromobacter xylosoxidans strain A22732 plasmid pA22732-IMP, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

13. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP289281 (Pseudomonas sp. EGD-AKN5 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

14. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MN366359 (Bacterium plasmid pALTS31, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

15. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_001735 (Enterobacter aerogenes plasmid R751, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

16. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015373 (Pandoraea pnomenusa strain MCB032 plasmid unnamed 2, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

17. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to AGRM01000006 (Salmonella enterica subsp. houtenae str. ATCC BAA-1581 plasmid pSEHO0A1, complete sequence, whole genome shotgun sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

18. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017908 (Mycobacterium abscessus subsp. bolletii F1725 plasmid BRA100, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

19. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to AJ863570 (Uncultured bacterium IncP-1beta multiresistance plasmid pB8) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

20. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KU238092 (Uncultured bacterium plasmid pDTC28, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

21. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JX469834 (Uncultured bacterium plasmid pDS3, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

22. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JX469831 (Uncultured bacterium plasmid pKSP212, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

23. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106172 (Uncultured bacterium plasmid pAKD29, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

24. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106173 (Uncultured bacterium plasmid pAKD31, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

25. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106174 (Uncultured bacterium plasmid pAKD33, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

26. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_004956 (Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

27. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106164 (Uncultured bacterium plasmid pAKD1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

28. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106165 (Uncultured bacterium plasmid pAKD14, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

29. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106166 (Uncultured bacterium plasmid pAKD15, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

30. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106168 (Uncultured bacterium plasmid pAKD17, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

31. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JN106169 (Uncultured bacterium plasmid pAKD18, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

32. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_014911 (Alicycliphilus denitrificans BC plasmid pALIDE02, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

33. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN386974 (Pseudomonas aeruginosa strain 1943 plasmid pPaeBURNS1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

34. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MG879028 (Uncultured bacterium plasmid pEG1-1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

35. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021650 (Acidovorax sp. T1 plasmid p2-T1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

36. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KF743817 (Proteus mirabilis plasmid R772, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

37. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KF743818 (Bordetella bronchiseptica plasmid R906, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

38. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JX486125 (Uncultured bacterium plasmid pRWC72a, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

39. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019238 (Rhodoferax koreense strain DCY-110 plasmid unnamed2) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

40. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038640 (Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

41. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KC170279 (Uncultured bacterium plasmid pMBUI8, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

42. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KU356987 (Variovorax paradoxus plasmid pBS64, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

43. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KU356988 (Variovorax paradoxus plasmid pHB44, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

44. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009797 (Burkholderia ambifaria AMMD plasmid pBII_1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

45. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_013176 (Pseudomonas putida plasmid pW2, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

46. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_019312 (Delftia sp. KV29 plasmid pKV29, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

47. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_019320 (Variovorax sp. DB1 plasmid pDB1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

48. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017455 (Dickeya solani strain PPO 9019 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

49. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_021077 (Comamonas sp. 7D-2 plasmid pBHB, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

50. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_007337 (Cupriavidus pinatubonensis JMP134 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

51. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_024998 (Acidovorax avenae subsp. avenae plasmid pAAA83 DNA, complete sequence, strain: 83) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

52. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH053445 (Pseudomonas aeruginosa strain PA1280 plasmid pICP-4GES, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

53. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_005088 (Delftia acidovorans B plasmid pUO1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

54. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_008385 (Burkholderia ambifaria AMMD plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ggcggcgtgaaggccggcgtcggcgcggtcgc	Protospacer
 * * ********.****** ********** 

55. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 6, identity: 0.812

cgggcc--gtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
--ggccaagagaaggtcggcgtgagctcggtcgc	Protospacer
  ****  * *************.** ****** 

56. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033968 (Cupriavidus pauculus strain FDAARGOS_614 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gtagcgtcgaacaagtcgatcttgtctatgcg	Protospacer
*. ****************** **** *.* *

57. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037902 (Cupriavidus metallidurans strain BS1 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.812

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gtagcgtcgaacaagtcgatcttgtctatgcg	Protospacer
*. ****************** **** *.* *

58. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 6, identity: 0.812

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
accggcggcaccgccagcttcggcgacggcac	Protospacer
** *. ***********.**** *******.*

59. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 6, identity: 0.812

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
accggcggcaccgccagcttcggcgacggcac	Protospacer
** *. ***********.**** *******.*

60. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 6, identity: 0.812

agcagggctggaccctcgaccgcatggccgca--	CRISPR spacer
agcagggctggaaccacgaccgc--ggctgcttc	Protospacer
************ ** *******  ***.**   

61. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040822 (Paraoceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence) position: , mismatch: 6, identity: 0.812

ccgaccggctccgcaccgacctccccaggatc---	CRISPR spacer
ccgcccggctccgcgccgacctcccc---gtccgg	Protospacer
*** **********.***********   .**   

62. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX443399 (Rhodococcus hoagii strain PAM1354 plasmid pVAPA1354, complete sequence) position: , mismatch: 6, identity: 0.812

--ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
tgccggcg--gccgcggccgacctgaatgtagcg	Protospacer
  **** *  *********** ***.******* 

63. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX443400 (Rhodococcus hoagii strain PAM1557 plasmid pVAPN1557, complete sequence) position: , mismatch: 6, identity: 0.812

--ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
tgccggcg--gccgcggccgacctgaatgtagcg	Protospacer
  **** *  *********** ***.******* 

64. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX443398 (Rhodococcus hoagii strain PAM1204 plasmid pVAPN1204, complete sequence) position: , mismatch: 6, identity: 0.812

--ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
tgccggcg--gccgcggccgacctgaatgtagcg	Protospacer
  **** *  *********** ***.******* 

65. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP851975 (Rhodococcus hoagii strain PAM2012 plasmid pVAPN2012, complete sequence) position: , mismatch: 6, identity: 0.812

--ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
tgccggcg--gccgcggccgacctgaatgtagcg	Protospacer
  **** *  *********** ***.******* 

66. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KF439868 (Rhodococcus hoagii strain PAM1571 plasmid pVAPN1571, complete sequence) position: , mismatch: 6, identity: 0.812

--ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
tgccggcg--gccgcggccgacctgaatgtagcg	Protospacer
  **** *  *********** ***.******* 

67. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041045 (Paracoccus sp. AK26 plasmid pAK1, complete sequence) position: , mismatch: 6, identity: 0.812

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ccgtgaggcccgcgccatgaccgagaccgagg	Protospacer
* . ******************* ****.**.

68. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 6, identity: 0.812

caaggaggcccgcgccatgaccgcgaccaaga--	CRISPR spacer
caaagaggcccgcgccatggccgt--ccaaggcc	Protospacer
***.***************.***.  *****.  

69. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 6, identity: 0.812

caaggaggcccgcgccatgaccgcgaccaaga--	CRISPR spacer
caaagaggcccgcgccatggccgt--ccaaggct	Protospacer
***.***************.***.  *****.  

70. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 6, identity: 0.812

caaggaggcccgcgccatgaccgcgaccaaga--	CRISPR spacer
caaagaggcccgcgccatggccgt--ccaaggct	Protospacer
***.***************.***.  *****.  

71. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 6, identity: 0.812

caaggaggcccgcgccatgaccgcgaccaaga--	CRISPR spacer
caaagaggcccgcgccatggccgt--ccaaggcc	Protospacer
***.***************.***.  *****.  

72. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 6, identity: 0.818

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
atcgtccccgaggccgcccgcgccctggccgag	Protospacer
.** *  ******* ************.*****

73. spacer 22.1|4570672|27|CP029188|CRISPRCasFinder matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

tgggtcggcgcgtagcgccgtcgttgt	CRISPR spacer
gcggccggagcgtagcgccgtcgttcg	Protospacer
  **.*** ****************  

74. spacer 22.1|4570672|27|CP029188|CRISPRCasFinder matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 6, identity: 0.778

tgggtcggcgcgtagcgccgtcgttgt	CRISPR spacer
aaggtaggcgcgtagcgccgtcgcggc	Protospacer
 .*** *****************. *.

75. spacer 4.1|1187576|35|CP029188|CRISPRCasFinder matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 7, identity: 0.8

aggaccgccgggggcgcccacgggtccggcccgag	CRISPR spacer
acgtccgccgggggcgctcacgggtcgggcgtgaa	Protospacer
* * *************.******** *** .**.

76. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP049751 (Rhodococcus fascians A21d2 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
ccgctcaccgtcgacctcgccttgctcgaaca	Protospacer
  * ***************** * *****.*.

77. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.781

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
cgcgtcaccgacgacctcgccctcctcgccct	Protospacer
 * ******* ********** ******  * 

78. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_LN832562 (Paracoccus aminovorans isolate JCM7685 plasmid IV, complete sequence) position: , mismatch: 7, identity: 0.781

ggggtcac--cgtcgacctcgccatcctcgagcg	CRISPR spacer
--cgccaccgcgtcgatctcgtcatcctcgagca	Protospacer
   *.***  ******.****.***********.

79. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to MK937606 (Microbacterium phage Margaery, complete genome) position: , mismatch: 7, identity: 0.781

ggggtcaccgtcgacctcgccatcctcgagcg-	CRISPR spacer
ctgtccaccgacgacctcgccaccctcg-gcgc	Protospacer
  * .***** ***********.***** *** 

80. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MT553337 (Mycobacterium phage DroogsArmy, complete genome) position: , mismatch: 7, identity: 0.781

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atggccgtgccgatcttggagcgcatggtgcc	Protospacer
*************** *** ****..** *  

81. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MG793454 (Mycobacterium phage SWU2, complete genome) position: , mismatch: 7, identity: 0.781

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atggccgtgccgatcttggagcgcatggtgcc	Protospacer
*************** *** ****..** *  

82. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JF957060 (Mycobacterium phage Timshel, complete genome) position: , mismatch: 7, identity: 0.781

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atggccgtgccgatcttggagcgcatggtgcc	Protospacer
*************** *** ****..** *  

83. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 7, identity: 0.781

atggc--cgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
--ggctgcgtgccgatcgtggcgcggacgggcgg	Protospacer
  ***  ****************** .***. *.

84. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034431 (Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence) position: , mismatch: 7, identity: 0.781

atggcc--gtgccgatcgtggcgcgcgcggagga	CRISPR spacer
--gacctggctccgatcgtggcccgcgccgagga	Protospacer
  *.**  *. *********** ***** *****

85. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.781

atggc--cgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
--ggctgcgtgccgatcgtggcgcggacgggcgg	Protospacer
  ***  ****************** .***. *.

86. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 7, identity: 0.781

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ttggccatgccgagcgtggcgcgcttgctgga	Protospacer
 *****.****** ********** .*  ***

87. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014659 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence) position: , mismatch: 7, identity: 0.781

atggcc--gtgccgatcgtggcgcgcgcggagga	CRISPR spacer
--gacctggctccgatcgtggcccgcgccgagga	Protospacer
  *.**  *. *********** ***** *****

88. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 7, identity: 0.781

atggcc--gtgccgatcgtggcgcgcgcggagga	CRISPR spacer
--gacctggctccgatggtggcgcgcgccgagga	Protospacer
  *.**  *. ***** *********** *****

89. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781

atggc--cgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
--ggctgcgtgccgatcgtggcgcggacgggcgg	Protospacer
  ***  ****************** .***. *.

90. spacer 5.8|1318943|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_022739 (Pseudomonas sp. VLB120 plasmid pSTY, complete sequence) position: , mismatch: 7, identity: 0.781

gcggtgttcggcttgcacgccttgtagacgtg	CRISPR spacer
acggtgttcggcttgtgcgccttgtagttacg	Protospacer
.**************..********** ...*

91. spacer 5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047181 (Rathayibacter festucae strain VKM Ac-2802 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tatgcctcgtcctcggtccagtcggaccgtga	CRISPR spacer
tgtggatcgtcctcggtccggtcggacagtcg	Protospacer
*.**  *************.******* ** .

92. spacer 5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033726 (Clavibacter michiganensis subsp. michiganensis strain UF1 plasmid pCM2U-F1, complete sequence) position: , mismatch: 7, identity: 0.781

tatgcctcgtcctcggtccagtcggaccgtga	CRISPR spacer
tgtggatcgtcctcggtccggtcggacagtcg	Protospacer
*.**  *************.******* ** .

93. spacer 5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047184 (Rathayibacter sp. VKM Ac-2801 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tatgcctcgtcctcggtccagtcggaccgtga	CRISPR spacer
tgtggatcgtcctcggtccggtcggacagtcg	Protospacer
*.**  *************.******* ** .

94. spacer 5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047177 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tatgcctcgtcctcggtccagtcggaccgtga	CRISPR spacer
tgtggatcgtcctcggtccggtcggacagtcg	Protospacer
*.**  *************.******* ** .

95. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_008537 (Arthrobacter sp. FB24 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

cgggccgtgaaggtcggcgtgggcgcggtcgg--	CRISPR spacer
gaggccgtggaggccggcgtgggcgc--tcgtct	Protospacer
 .*******.***.************  ***   

96. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gccgggtcgcacaagtcgatcgtgcgctcgag	Protospacer
**** **** **************.   **.*

97. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.781

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gccgggtcgcacaagtcgatcgtgcgctcgag	Protospacer
**** **** **************.   **.*

98. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_010474 (Synechococcus sp. PCC 7002 plasmid pAQ7, complete sequence) position: , mismatch: 7, identity: 0.781

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gcctcgtcgaacaagtcgatggtgatgtcgaa	Protospacer
*** **************** *** .* **..

99. spacer 6.2|1329107|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP009637 (Bacillus cereus 03BB108 plasmid pBFI_5, complete sequence) position: , mismatch: 7, identity: 0.781

cacccgc-agttgatcccggcggtgctggggct	CRISPR spacer
-atatgcaagttgatcctggcggggctgggggt	Protospacer
 *. .** *********.***** ******* *

100. spacer 6.2|1329107|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cacccgcagttgatcccggcggtgctggggct	CRISPR spacer
aagcagcagttgatccggtcggtgctggcgtt	Protospacer
 * * *********** * ********* *.*

101. spacer 6.2|1329107|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP053964 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

cacccgc-agttgatcccggcggtgctggggct	CRISPR spacer
-atatgcaagttgatcctggcggggctgggggt	Protospacer
 *. .** *********.***** ******* *

102. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 7, identity: 0.781

gcgggcggggagaggatgaccgtcgccgcggt-	CRISPR spacer
ggaagcggtgagatgatgaccgtcgcc-cgttc	Protospacer
* ..**** **** ************* ** * 

103. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 7, identity: 0.781

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
gccgggacggagaggatgagcgtcgccacggc	Protospacer
** ** . *********** *******.***.

104. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to MK937598 (Microbacterium phage Celaena, complete genome) position: , mismatch: 7, identity: 0.781

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
gcgtcggacgaggggatgaacgtcgccgcggt	Protospacer
***   *. ***.****** ************

105. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
accatgcgcaccgccggttacgccgacggcga	Protospacer
** . * ********.*** *********** 

106. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
accatgcgcaccgccggttacgccgacggcga	Protospacer
** . * ********.*** *********** 

107. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP051471 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10B, complete sequence) position: , mismatch: 7, identity: 0.781

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
acatcggctcgaccctcgaccggatggccgcg	Protospacer
*    **** ************ ********.

108. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP030274 (Rhodobacter sphaeroides 2.4.1 plasmid pB, complete sequence) position: , mismatch: 7, identity: 0.781

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
acatcggctcgaccctcgaccggatggccgcg	Protospacer
*    **** ************ ********.

109. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to CP047034 (Rhodobacter sphaeroides strain DSM 158 plasmid pB, complete sequence) position: , mismatch: 7, identity: 0.781

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
acatcggctcgaccctcgaccggatggccgcg	Protospacer
*    **** ************ ********.

110. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP015291 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid c, complete sequence) position: , mismatch: 7, identity: 0.781

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
acatcggctcgaccctcgaccggatggccgcg	Protospacer
*    **** ************ ********.

111. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP047040 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pB, complete sequence) position: , mismatch: 7, identity: 0.781

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
acatcggctcgaccctcgaccggatggccgcg	Protospacer
*    **** ************ ********.

112. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NC_011962 (Rhodobacter sphaeroides KD131 plasmid pRSKD131A, complete sequence) position: , mismatch: 7, identity: 0.781

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
atatcggctcgaccctcgaccggatggccgcg	Protospacer
*    **** ************ ********.

113. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP015215 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid d, complete sequence) position: , mismatch: 7, identity: 0.781

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
acatcggctcgaccctcgaccggatggccgcg	Protospacer
*    **** ************ ********.

114. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KC292022 (Halovirus HRTV-5, complete genome) position: , mismatch: 7, identity: 0.781

ccgaccggctccgcaccgacctccccaggatc---	CRISPR spacer
ccgaccggctccgtatcgacct---cggtatcaag	Protospacer
*************.*.******   *.* ***   

115. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to AY190604 (Halovirus HF1, complete genome) position: , mismatch: 7, identity: 0.781

ccgaccggctccgcaccgacctccccaggatc---	CRISPR spacer
ccgaccggctccgtatcgacct---cggtatcaaa	Protospacer
*************.*.******   *.* ***   

116. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_003345 (Halorubrum phage HF2, complete genome) position: , mismatch: 7, identity: 0.781

ccgaccggctccgcaccgacctccccaggatc---	CRISPR spacer
ccgaccggctccgtatcgacct---cggtatcaaa	Protospacer
*************.*.******   *.* ***   

117. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 7, identity: 0.781

ccgaccggctccgcaccgacctccccaggatc---	CRISPR spacer
ccgaccggctccgtatcgacct---cggtatcaaa	Protospacer
*************.*.******   *.* ***   

118. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 7, identity: 0.781

ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
acaaaattgccgaggccgagctggatgtggcc	Protospacer
 *..*. ***** ***************.***

119. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 7, identity: 0.781

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
cgcgcaggcccccgccatgaccgcgaccgggc	Protospacer
*. * ****** ****************..* 

120. spacer 6.16|1329961|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015170 (Acetobacter ascendens strain LMG 1591 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ccggccacaccgcacaggatgccgaccagtgg	CRISPR spacer
acggccacaccgcacagaatgctgaaaggtgt	Protospacer
 ****************.****.**  .*** 

121. spacer 6.19|1330144|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK977705 (Gordonia Phage Mollymur, complete genome) position: , mismatch: 7, identity: 0.781

gtgtcgacgtagcgctgggtcgcggagtcgcc	CRISPR spacer
gcaatgacgtcgcgctgggccgcggagtcggc	Protospacer
*.. .***** ********.********** *

122. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_013193 (Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01, complete sequence) position: , mismatch: 7, identity: 0.781

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
ggccacggcctgcccgagccggtcgacctgga	Protospacer
* * *..****************** ** ** 

123. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 7, identity: 0.781

-catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
atggacgg-ccagggcgttccggccgggcaggt	Protospacer
 ..  *** *********.**********.***

124. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_HG938356 (Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141 plasmid pHAMBI1141a, complete sequence) position: , mismatch: 7, identity: 0.781

-catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
atggacgg-ccagggcgtgccggccgggcaggt	Protospacer
 ..  *** ********* **********.***

125. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 7, identity: 0.781

catccgg---tccagggcgtcccggccgggcgggt	CRISPR spacer
---ctggaattgcaggccgtcccggccgggcaggt	Protospacer
   *.**   * **** **************.***

126. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_LR134469 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 27, complete sequence) position: , mismatch: 7, identity: 0.788

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gccgagggcgaggtggcccgcgccctggccgag	Protospacer
*.*  *. *****.*************.*****

127. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP040764 (Paracoccus sp. 2251 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.788

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
cgcctgatcgcggcggcccgcgccctgccggtg	Protospacer
  *****.** **************** * * *

128. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.788

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
ggcctgaccgaggcgtaccgcgccctgcatgac	Protospacer
* *************  **********  .** 

129. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gccgagcccgacccggcccgcgccctgaccggg	Protospacer
*.*  * ****  ******************.*

130. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP035424 (Leisingera sp. NJS204 plasmid unnamed7, complete sequence) position: , mismatch: 7, identity: 0.788

---gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gaggtcc---gcgatgcggcccgcgccctgcccgat	Protospacer
   ****    *** *************** **** 

131. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP038236 (Leisingera sp. NJS201 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.788

---gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gaggtcc---gcgatgcggcccgcgccctgcccgat	Protospacer
   ****    *** *************** **** 

132. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 7, identity: 0.788

---gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gagggcc---ccgaggccgcccgcgccctgatcgcg	Protospacer
   * **   ******* *************.** *

133. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
caggtcaccgtcggcctcgtcatcctcggctc	Protospacer
 .***********.*****.********. . 

134. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gcagatcgcgtcgacctcgccatgctccagcg	Protospacer
* .* .  *************** *** ****

135. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP017148 (Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
ttgctcaccctcggcctcgccatcctcggccc	Protospacer
  * ***** ***.**************. * 

136. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NC_047824 (Shewanella phage SppYZU05, complete genome) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gcgtatacggtagacctcgccatcctcgagtt	Protospacer
* *  .** ** ******************. 

137. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaggcgaccggcgatctcgccatcctcgacga	Protospacer
*.**. **** ***.**************  .

138. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaggcgaccggcgatctcgccatcctcgacga	Protospacer
*.**. **** ***.**************  .

139. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaggcgaccggcgatctcgccatcctcgacga	Protospacer
*.**. **** ***.**************  .

140. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to HM486077 (Tsukamurella phage TPA2, complete sequence) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gtgcgcgccgtcgaccccgccatccccgagtc	Protospacer
* *  *.*********.********.****. 

141. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NC_015210 (Tsukamurella phage TPA2, complete genome) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gtgcgcgccgtcgaccccgccatccccgagtc	Protospacer
* *  *.*********.********.****. 

142. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to KY092480 (Streptomyces phage Picard, complete genome) position: , mismatch: 8, identity: 0.75

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
cggtacaccgtcgacctcgccgtactcggcgg	Protospacer
 **  ****************.* ****.  *

143. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 8, identity: 0.75

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
ccgagcgggtcggcaggccgtgcatgcgccgg	Protospacer
*    *. *** **************** ***

144. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025805 (Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
cggatctggtcggcagcccgtgcatgcggcga	Protospacer
**  .*  *** **** **************.

145. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_015377 (Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
cacgccgtgccggtcgtgccgcgcgcggcgcc	Protospacer
   *********.***** ********* *  

146. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

147. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

148. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

149. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

150. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

151. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

152. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

153. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
atccccgtgccgatcgcggcgcgggcggccag	Protospacer
**  ************.****** ****  ..

154. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MH588547 (Caulobacter phage CcrSC, complete genome) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
aaagccatgccgatcgtggcgcccgcgacgtt	Protospacer
* .***.*************** ****. *  

155. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011667 (Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
gcgttcttcccgatcgtggcgcgcaccgagga	Protospacer
..* .* * ***************.* *****

156. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035514 (Haematobacter massiliensis strain OT1 plasmid pOT1-4, complete sequence) position: , mismatch: 8, identity: 0.75

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctcggcgtgccgatcgtggcgatcgcggtgtt	Protospacer
 * * ****************  ***** *  

157. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

158. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

159. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

160. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

161. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

162. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

163. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

164. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

165. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

166. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

167. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

168. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

169. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

170. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

171. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

172. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

173. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

174. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

175. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

176. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

177. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

178. spacer 5.9|1319004|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

gaccg--gcccttcgtgtggaccgtccgcaactg	CRISPR spacer
--ctggcgcccttcgggttgaccgtccgcaccgc	Protospacer
  *.*  ******** ** *********** *  

179. spacer 5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049750 (Rhodococcus fascians A21d2 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

gtggcctcagcgatgtacgtcgcgttcgcggc	CRISPR spacer
gcagacgaggcgatggacgtcgcggtcgcggc	Protospacer
*..* *  .****** ******** *******

180. spacer 5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020883 (Xanthomonas citri pv. citri strain TX160042 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

-gtggcctcagcgatgtacgtcgcgttcgcggc	CRISPR spacer
cgcaacat-ggcggtgtacgtcgcggtcgcggc	Protospacer
 *...* * .***.*********** *******

181. spacer 5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020886 (Xanthomonas citri pv. citri strain TX160149 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

-gtggcctcagcgatgtacgtcgcgttcgcggc	CRISPR spacer
cgcaacat-ggcggtgtacgtcgcggtcgcggc	Protospacer
 *...* * .***.*********** *******

182. spacer 5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021016 (Xanthomonas citri pv. phaseoli var. fuscans strain CFBP6991 plasmid pF, complete sequence) position: , mismatch: 8, identity: 0.75

-gtggcctcagcgatgtacgtcgcgttcgcggc	CRISPR spacer
cgcaacat-ggcggtgtacgtcgcggtcgcggc	Protospacer
 *...* * .***.*********** *******

183. spacer 5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020890 (Xanthomonas citri pv. citri strain TX160197 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

-gtggcctcagcgatgtacgtcgcgttcgcggc	CRISPR spacer
cgcaacat-ggcggtgtacgtcgcggtcgcggc	Protospacer
 *...* * .***.*********** *******

184. spacer 5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_016972 (Streptomyces hygroscopicus subsp. jinggangensis 5008 plasmid pSHJG2, complete sequence) position: , mismatch: 8, identity: 0.75

gccgccatgcgggagcagggcgacctcctcga	CRISPR spacer
accgccatgcgcgagcaggccgaccactacac	Protospacer
.********** ******* ***** *. *. 

185. spacer 5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN586022 (Gordonia phage Chidiebere, complete genome) position: , mismatch: 8, identity: 0.75

--gccgccatgcgggagcagggcgacctcctcga	CRISPR spacer
tggttgc--ggcgggagcaggacgacatcctcgg	Protospacer
  *..**   ***********.**** ******.

186. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
ccgtccccggtgctgctcgacctgggcaccgg	Protospacer
******* ************ *** .*  .* 

187. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
ccgtccccggtgctgctcgacctgggcaccgg	Protospacer
******* ************ *** .*  .* 

188. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 8, identity: 0.75

-ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
atcgt-gcagctgctgctggaactgcaccgcaa	Protospacer
 .***  *** ******* ***********.. 

189. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 8, identity: 0.75

-ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
atcgt-gcagctgctgctggaactgcaccgcaa	Protospacer
 .***  *** ******* ***********.. 

190. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 8, identity: 0.75

ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
gccttccaggtgctgcgcgaactgcgccacgg	Protospacer
 * *.*********** ********.**..* 

191. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043044 (Gluconobacter thailandicus strain HD924 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gcacgatcgaacaagtcgatcgtatcgtcgat	Protospacer
**   .*****************.*** **. 

192. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016482 (Synechococcus sp. PCC 7117 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gcctcgtcgaacaagtcgatggtgatgttgaa	Protospacer
*** **************** *** .* .*..

193. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX443399 (Rhodococcus hoagii strain PAM1354 plasmid pVAPA1354, complete sequence) position: , mismatch: 8, identity: 0.75

gccgcgtcgaacaagtcgatcgtgtcgacggg--	CRISPR spacer
gccgcgtcgaccaagtcaatc--gtcagtggcat	Protospacer
********** ******.***  ***...**   

194. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX443400 (Rhodococcus hoagii strain PAM1557 plasmid pVAPN1557, complete sequence) position: , mismatch: 8, identity: 0.75

gccgcgtcgaacaagtcgatcgtgtcgacggg--	CRISPR spacer
gccgcgtcgaccaagtcaatc--gtcagtggcat	Protospacer
********** ******.***  ***...**   

195. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 8, identity: 0.75

-gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
tgctg-gtagaacaaatcgatcgtgtcgatctt	Protospacer
 **.* ** ******.*************.   

196. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MH271296 (Gordonia phage Emperor, complete genome) position: , mismatch: 8, identity: 0.75

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
gcgtagtcgaaccagtcgatcgggtcgatgcc	Protospacer
**   ******* ********* *****.*  

197. spacer 6.2|1329107|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 8, identity: 0.75

cacccgcagttgatcccggcggtgctggggct	CRISPR spacer
ctggtgccgtcgatcccggcggtgctggggaa	Protospacer
*   .** **.*******************  

198. spacer 6.2|1329107|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP011274 (Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence) position: , mismatch: 8, identity: 0.75

cacccgcagttgatcccggcggtgctggggct	CRISPR spacer
ctggtgccgtcgatcccggcggtgctggggaa	Protospacer
*   .** **.*******************  

199. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 8, identity: 0.75

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
gtgcacggcaccgccaccttcgccgacggccc	Protospacer
... * ********** .************ *

200. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP040824 (Paraoceanicella profunda strain D4M1 plasmid pD4M1F, complete sequence) position: , mismatch: 8, identity: 0.75

acagagg-----gcaccgccagtttcgccgacggcgc	CRISPR spacer
-----ggcttccgcaccgccagcttcgccgagggcgt	Protospacer
     **     **********.******** ****.

201. spacer 6.6|1329351|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaggagggacacggagaacggcgcgccgtc	CRISPR spacer
actgcgccggaaacggagaaccgcgcgccgtc	Protospacer
 * . *  *** ********* **********

202. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
ccgcccggcgccgcaccgacctcgtccgctcc	Protospacer
*** ***** ************* .* *  .*

203. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
ccgcccggcgccgcaccgacctcgtccgctcc	Protospacer
*** ***** ************* .* *  .*

204. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
ccgaccggctccccaccgaactccgcgacgac	Protospacer
************ ****** **** *.. . *

205. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MH727553 (Mycobacterium phage LittleLaf, complete genome) position: , mismatch: 8, identity: 0.75

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccgtccgtcgagtaccacctgtgggacctggc	Protospacer
* *.  *. ************.*** ******

206. spacer 6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcggcccctccacatcggcggccgggtatt	CRISPR spacer
ccgcggcctctccacttcggcggctcgagaac	Protospacer
********.****** ********. *. * .

207. spacer 6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018322 (Alteromonas macleodii strain Te101 plasmid pTE101a, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcggcccctccacatcggcggccgggtatt	CRISPR spacer
ccgcggcctctccacttcggcggctcgagaac	Protospacer
********.****** ********. *. * .

208. spacer 6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK411746 (Arthrobacter phage Sonali, complete genome) position: , mismatch: 8, identity: 0.75

tcagccacctccttctcattgcccgcgagctg	CRISPR spacer
ttcgcagggtcctcctcatagcccgcgagctg	Protospacer
*. ** .  ****.***** ************

209. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

caaggaggcccgcgccatgaccgcgaccaaga-----	CRISPR spacer
caaggaggcccgcgccctcaccg-----aagggcatc	Protospacer
**************** * ****     ***.     

210. spacer 6.19|1330144|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MT657339 (Gordonia phage SpeedDemon, complete genome) position: , mismatch: 8, identity: 0.75

gtgtcgacgtagcgctgggtcgcggagtcgcc	CRISPR spacer
gcgatgacgtcgcgctgggccgcggagtccga	Protospacer
*.* .***** ********.*********   

211. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
cgcatcgtcctgcccgagccgggcgcccaggt	Protospacer
  *. .. ************** *********

212. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
gtcgaaagcctgctcgagccggtccagcatcg	Protospacer
***** *******.**********   **   

213. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 8, identity: 0.75

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
gtcgaaagcctgctcgagccggtccagcatcg	Protospacer
***** *******.**********   **   

214. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_019388 (Thermus oshimai JL-2 plasmid pTHEOS02, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
ctgaagggcctgcccgaggcggtggcccaggg	Protospacer
 * .* .*********** **** ******* 

215. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010825 (Thermus aquaticus Y51MC23 plasmid pTA69, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
ctgaagggcctgcccgaggcggtggcccaggg	Protospacer
 * .* .*********** **** ******* 

216. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgata-gcctgcccgagccggtcgcccaggt	CRISPR spacer
-tcactgcacctgcccgagtcggtcgcgcagga	Protospacer
 **. *. .**********.******* **** 

217. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MH834619 (Arthrobacter phage Maureen, complete genome) position: , mismatch: 8, identity: 0.75

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
accgaacaccggcccgacccggtcgcccaggc	Protospacer
..***  .** ****** *************.

218. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_048115 (Arthrobacter phage Liebe, complete genome) position: , mismatch: 8, identity: 0.75

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
accgaacaccggcccgacccggtcgcccaggc	Protospacer
..***  .** ****** *************.

219. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 8, identity: 0.75

catccggt-----ccagggcgtcccggccgggcgggt	CRISPR spacer
-----ggcaaataccagggcggcccggccggccgggt	Protospacer
     **.     ******** ********* *****

220. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044333 (Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
caggcgctccagggcttcccggccgggaacga	Protospacer
**  ** ******** *********** . * 

221. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 8, identity: 0.75

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
cagcacaccccgggcgtccccgccgggcgggg	Protospacer
** *  ..** ********* ********** 

222. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
caaccggtccagggcgttccggctgctggcgc	Protospacer
** **************.*****.*   * *.

223. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038257 (Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
gagccggtccaggtcgtcccgggcggcgcgct	Protospacer
 * ********** ******** ***   * *

224. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gccgagcgcgaggccgcccgcgccctgtccgac	Protospacer
*.*  *  ****** ************ **** 

225. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gccgagcgcgaggccgcccgcgccctgtccgac	Protospacer
*.*  *  ****** ************ **** 

226. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gccgagcgcgaggccgcccgcgccctgtccgac	Protospacer
*.*  *  ****** ************ **** 

227. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gccgagcgcgaggccgcccgcgccctggccgac	Protospacer
*.*  *  ****** ************.**** 

228. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
ctgctgaccgaggccgccggcgccctgaaggtc	Protospacer
 * *********** *** *********  *  

229. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
ctgctgcccgaggcggccggcgccctgttcggc	Protospacer
 * *** *********** ******** .**. 

230. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP016620 (Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gacatgaacgaggcggtccgcgccctgatccta	Protospacer
* * *** ********.***********.*  .

231. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 8, identity: 0.758

gtcctgaccgaggcggcccgcgccctgaccgag--	CRISPR spacer
atcctgatcgaggcggcccgcgacc--actggttc	Protospacer
.******.************** **  **.*.   

232. spacer 21.1|4350887|33|CP029188|CRISPRCasFinder matches to MK305888 (Streptomyces phage Austintatious, complete genome) position: , mismatch: 8, identity: 0.758

cgccattcgagggcgacttcgacgcaggcgctt	CRISPR spacer
ccgcgttcgagggcgacctcgacgccggcaccg	Protospacer
*  *.************.******* ***.*. 

233. spacer 21.1|4350887|33|CP029188|CRISPRCasFinder matches to KY092481 (Streptomyces phage PapayaSalad, complete genome) position: , mismatch: 8, identity: 0.758

cgccattcgagggcgacttcgacgcaggcgctt	CRISPR spacer
ccgcgttcgagggcgacctcgacgccggcaccg	Protospacer
*  *.************.******* ***.*. 

234. spacer 26.1|5076117|34|CP029188|CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 8, identity: 0.765

gcctggcgtcccgcgcttgcgcgggatggtctgg--	CRISPR spacer
gggcggcgtcccccgcttgcgcggcatg--caggcc	Protospacer
*  .******** *********** ***  * **  

235. spacer 26.1|5076117|34|CP029188|CRISPRCasFinder matches to NZ_CP006257 (Pseudomonas syringae pv. syringae HS191 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

gcctgg--cgtcccgcgcttgcgcgggatggtctgg	CRISPR spacer
--ctgggccgtccagcgcttgcgcgggatcgtagtc	Protospacer
  ****  ***** *************** **    

236. spacer 26.1|5076117|34|CP029188|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

gcctggcgtcccgcgcttgcgcgggatggtctgg--	CRISPR spacer
gggcggcgtcccccgcttgcgcggcatg--caggcc	Protospacer
*  .******** *********** ***  * **  

237. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

238. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

239. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

240. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

241. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

242. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

243. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

244. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

245. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP011667 (Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gccgacaccgtcgacgtcgccatccacgccga	Protospacer
*  * ********** ********* **   .

246. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP033583 (Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gccgacaccgtcgacgtcgccatccacgccga	Protospacer
*  * ********** ********* **   .

247. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

248. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

249. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
acgctcaccgtcgcccgcgccatcctcatgga	Protospacer
. * ********* ** **********. * .

250. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
gaagcgaccggcgatctcgccatcctcgacga	Protospacer
*..*. **** ***.**************  .

251. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to KY092482 (Streptomyces phage Mojorita, complete genome) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
cgctacaccgtcgacctcgccgtactcggcgg	Protospacer
 *   ****************.* ****.  *

252. spacer 5.1|1318516|32|CP029188|CRISPRCasFinder,CRT matches to JX182371 (Streptomyces phage SV1, complete genome) position: , mismatch: 9, identity: 0.719

ggggtcaccgtcgacctcgccatcctcgagcg	CRISPR spacer
cgctacaccgtcgacctcgccgtgctcggcgg	Protospacer
 *   ****************.* ****.  *

253. spacer 5.2|1318577|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tctgggagcacgccgtgaagctcgcggcggac	CRISPR spacer
tgcgcagccacgccgagaagctggcggcggaa	Protospacer
* .* .. ******* ****** ******** 

254. spacer 5.2|1318577|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP034352 (Streptomyces sp. W1SF4 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

tctggg---agcacgccgtgaagctcgcggcggac	CRISPR spacer
---gagtacggcacgtcgtgaagctctcggcggcg	Protospacer
   *.*   .*****.********** ******  

255. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

256. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK416009 (Klebsiella phage ST11-OXA245phi3.1, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

257. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK422449 (Klebsiella phage ST512-KPC3phi13.2, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

258. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK416020 (Klebsiella phage ST11-VIM1phi8.4, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

259. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

260. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK433580 (Klebsiella phage ST11-OXA48phi15.3, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

261. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK422454 (Klebsiella phage ST340-VIM1phi10.2, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

262. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_049449 (Klebsiella phage ST437-OXA245phi4.2, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

263. spacer 5.5|1318760|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK433582 (Klebsiella phage ST258-KPC3phi16.2, complete genome) position: , mismatch: 9, identity: 0.719

cgttccacgtctgcaggccgtgcatgcggcgg	CRISPR spacer
catgggcggtctgcaggccgtgcgtgcgccgt	Protospacer
*.*     ***************.**** ** 

264. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
gtggccgcgccgatcgtggcgcgcagcggcag	Protospacer
.******.****************.  *. ..

265. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
gccgccgggctgatcgtggcgcgcgcgcaatg	Protospacer
.. **** **.**************** *. .

266. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
acagccgtgccgatcgcggcgcccgcgaccac	Protospacer
*..*************.***** ****.  . 

267. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048631 (Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
gacctctcgcccatcgtggcgcgcgccgagga	Protospacer
.   .* .*** ************** *****

268. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022370 (Bosea sp. AS-1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
gacctctcgccgatcgtcgcgcgcgctgagga	Protospacer
.   .* .********* ******** *****

269. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
cgcgccgtgcagatcgtggcgcacgctcaata	Protospacer
   ******* ***********.***  *. *

270. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

271. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

272. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

273. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

274. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

275. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

276. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
tcggccgtgccgatggcggcgcgcgtctcgca	Protospacer
 .************ *.********.   * *

277. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

278. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

279. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

280. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

281. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

282. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
gattccgtgccgatcgttgagcgcgcgacgca	Protospacer
.   ************* * *******. * *

283. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

284. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

285. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgggcccatcgtggcgcgcctgcaaac	Protospacer
 ****** *** ************ .* *.. 

286. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_014458 (Mycobacterium phage Angelica, complete genome) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
acggccgtgacgatcgcggcgcgcggctcagg	Protospacer
*.******* ******.********    .*.

287. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MG962364 (Mycobacterium phage Deby, complete genome) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
acggccgtgacgatcgcggcgcgcggctcagg	Protospacer
*.******* ******.********    .*.

288. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MF074189 (Sinorhizobium phage phiM5, complete genome) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
cccgaggcgccgatcgtgccgcccgcggaggt	Protospacer
 . *  *.********** *** ******** 

289. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MF919532 (Mycobacterium phage Sulley, complete genome) position: , mismatch: 9, identity: 0.719

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
acggccgtgacgatcgcggcgcgcggctcagg	Protospacer
*.******* ******.********    .*.

290. spacer 5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcctcagcgatgtacgtcgcgttcgcggc	CRISPR spacer
ggcggctcagcgatgtacgtcgacttcggcca	Protospacer
*  * *****************  ****    

291. spacer 5.12|1319187|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcctcagcgatgtacgtcgcgttcgcggc	CRISPR spacer
ggcggctcagcgatgtacgtcgacttcggcca	Protospacer
*  * *****************  ****    

292. spacer 5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacaagggcccagcccttcctggcgatgtg	CRISPR spacer
caggcctgggccaagcccttcctggcgctggc	Protospacer
. *.*  ***** ************** **  

293. spacer 5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacaagggcccagcccttcctggcgatgtg	CRISPR spacer
caggcctgggccaagcccttcctggcgctggc	Protospacer
. *.*  ***** ************** **  

294. spacer 5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacaagggcccagcccttcctggcgatgtg	CRISPR spacer
caggcctgggccaagcccttcctggcgctggc	Protospacer
. *.*  ***** ************** **  

295. spacer 5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacaagggcccagcccttcctggcgatgtg	CRISPR spacer
caggcctgggccaagcccttcctggcgctggc	Protospacer
. *.*  ***** ************** **  

296. spacer 5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacaagggcccagcccttcctggcgatgtg	CRISPR spacer
caggcctgggccaagcccttcctggcgctggc	Protospacer
. *.*  ***** ************** **  

297. spacer 5.13|1319248|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgacaagggcccagcccttcctggcgatgtg	CRISPR spacer
caggcctgggccaagcccttcctggcgctggc	Protospacer
. *.*  ***** ************** **  

298. spacer 5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK977696 (Gordonia phage SCentae, complete genome) position: , mismatch: 9, identity: 0.719

tatgcctcgtcctcggtccagtcggaccgtga	CRISPR spacer
agccccttgtactcggtccagtcggactcgga	Protospacer
 .. ***.** ****************.  **

299. spacer 5.14|1319309|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK977695 (Gordonia phage Pupper, complete genome) position: , mismatch: 9, identity: 0.719

tatgcctcgtcctcggtccagtcggaccgtga	CRISPR spacer
agccccttgtactcggtccagtcggactcgga	Protospacer
 .. ***.** ****************.  **

300. spacer 5.15|1319370|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MH992131 (UNVERIFIED: Thermus phage TSP4, complete genome) position: , mismatch: 9, identity: 0.719

gccgccatgcgggagcagggcgacctcctcga	CRISPR spacer
gggcggatgcgggagccgggcaacctcctccg	Protospacer
*     ********** ****.******** .

301. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
atcgacgtgaaggacggcgtcggcgcggcggc	Protospacer
   * ******** ****** *******. * 

302. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
atcgacgtgaaggacggcgtcggcgcggcggc	Protospacer
   * ******** ****** *******. * 

303. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ctgattccgaaggtcggcgtggccgcggacgt	Protospacer
* *... .************** ***** ** 

304. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.719

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
ctgattccgaaggtcggcgtggccgcggacgt	Protospacer
* *... .************** ***** ** 

305. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
gccggccaggtgctgctcgaactggaccccac	Protospacer
 *   ******************* *** ...

306. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
gccttccaggtgctgatcgaacggcacctcaa	Protospacer
 * *.********** ****** ***** .. 

307. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
ggctggcaggtgctgcgcgaactgcgccgcga	Protospacer
   *  ********** ********.***.* 

308. spacer 5.17|1319492|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034154 (Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

ccgtcccaggtgctgctcgaactgcaccgtgt	CRISPR spacer
gccttccaggtgctgatcgaacggcacctcaa	Protospacer
 * *.********** ****** ***** .. 

309. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
atcgcgtcgaccaagtcgatcctgttgcatgc	Protospacer
..******** ********** ***.*   * 

310. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.719

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
tcttccgcgaaccagtcgatcgtgtcggcgcc	Protospacer
 *. *  ***** **************.**  

311. spacer 6.2|1329107|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP017944 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cacccgcagttgatcccggcggtgctggggct	CRISPR spacer
tgccctcagttgatcccggcggttcttgtctg	Protospacer
..*** ***************** ** *  . 

312. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
tgcccgaacaccgcgagttccgccgacggcgc	Protospacer
     *..****** ****.************

313. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP029094 (Pseudomonas aeruginosa strain AR441 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
gtcaacggcaccgccagtttcgctgccggcag	Protospacer
.. .* *****************.* ****. 

314. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP027170 (Pseudomonas aeruginosa strain AR_0356 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
gtcaacggcaccgccagtttcgctgccggcag	Protospacer
.. .* *****************.* ****. 

315. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 9, identity: 0.719

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
gccgctggtggatccgcgaccgcatggccgcc	Protospacer
. *.  * ****.** *************** 

316. spacer 6.5|1329290|32|CP029188|CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 9, identity: 0.719

agcagggctggaccctcgaccgcatggccgca	CRISPR spacer
ggaagggctggaccgtcgactgcatgaagggg	Protospacer
.* *********** *****.*****.  * .

317. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134469 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 27, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
tcgaccggctccgctccgaccttccagacggc	Protospacer
.************* *******.** .. . *

318. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_010865 (Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
tggaccggctccgctccggcctccccggacat	Protospacer
. ************ ***.*******.*.  .

319. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
tggaccggctccgctccggcctccccggacat	Protospacer
. ************ ***.*******.*.  .

320. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
ccgagcggctcagcaccgacctctacgtgccg	Protospacer
**** ****** ***********. *. * . 

321. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020556 (Streptomyces sp. Sge12 plasmid pSGE, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
tcgtccggctccgcaccgccctcctgagtgca	Protospacer
.** ************** *****. ** .. 

322. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaccggctccgcaccgacctccccaggatc---	CRISPR spacer
ccgaccggctccgcaccg---ccatcatggccgcg	Protospacer
******************   .* .** *..*   

323. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY454639 (Klebsiella pneumoniae strain INF167 plasmid INF167_p0001, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
gcgcaggcggactacgacctgcgggatattga	Protospacer
  ********* *** ********* . * * 

324. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027063 (Klebsiella variicola strain WCHKV030666 plasmid pVir_030666, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
gcgcaggcggactacgacctgcgggatattga	Protospacer
  ********* *** ********* . * * 

325. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031790 (Klebsiella pneumoniae strain KSB1_1I-sc-2280289 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
gcgcaggcggactacgacctgcgggatattga	Protospacer
  ********* *** ********* . * * 

326. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019161 (Klebsiella pneumoniae strain GN-2 plasmid pGN-2, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
gcgcaggcggactacgacctgcgggatattga	Protospacer
  ********* *** ********* . * * 

327. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015754 (Klebsiella pneumoniae strain W14 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
gcgcaggcggactacgacctgcgggatattga	Protospacer
  ********* *** ********* . * * 

328. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026161 (Klebsiella pneumoniae strain F93-1 plasmid pF93-1_1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
gcgcaggcggactacgacctgcgggatattga	Protospacer
  ********* *** ********* . * * 

329. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016160 (Klebsiella pneumoniae strain TH1 isolate TH1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
gcgcaggcggactacgacctgcgggatattga	Protospacer
  ********* *** ********* . * * 

330. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN329674 (Mycobacterium phage JoieB, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

331. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK494123 (Mycobacterium phage Blackbeetle, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

332. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN428061 (Mycobacterium phage Corazon, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

333. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MG757167 (Mycobacterium phage Tesla, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

334. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MH727562 (Mycobacterium phage VasuNzinga, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

335. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK305892 (Mycobacterium phage RedRaider77, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

336. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KJ538721 (Mycobacterium phage MosMoris, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

337. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to JF704100 (Mycobacterium phage Marvin, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

338. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN428056 (Mycobacterium phage Pringar, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

339. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK279842 (Mycobacterium phage Raela, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

340. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MK061407 (Mycobacterium phage Beelzebub, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

341. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN329676 (Mycobacterium phage Poise, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

342. spacer 6.9|1329534|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KX159477 (Mycobacterium phage Gattaca, complete genome) position: , mismatch: 9, identity: 0.719

cagcaggcggagtaccacctgcgggccctggc	CRISPR spacer
ccatccgtcgagtaccacctgtgggacctggc	Protospacer
* ..  *. ************.*** ******

343. spacer 6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcggcccctccacatcggcggccgggtatt	CRISPR spacer
gtccagcccctccacgtcggcggtcgggtcgg	Protospacer
 . *.**********.*******.*****   

344. spacer 6.10|1329595|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.719

ccgcggcccctccacatcggcggccgggtatt	CRISPR spacer
tgccggcctcgccacatcggcggccgtggagg	Protospacer
.  *****.* *************** * *  

345. spacer 6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 9, identity: 0.719

tcagccacctccttctcattgcccgcgagctg	CRISPR spacer
accgccaccgccttctcatttcccgccgacca	Protospacer
 * ****** ********** ***** ..*..

346. spacer 6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 9, identity: 0.719

tcagccacctccttctcattgcccgcgagctg	CRISPR spacer
accgccaccgccttctcatttcccgccgacca	Protospacer
 * ****** ********** ***** ..*..

347. spacer 6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 9, identity: 0.719

tcagccacctccttctcattgcccgcgagctg	CRISPR spacer
accgccaccgccttctcatttcccgccgacca	Protospacer
 * ****** ********** ***** ..*..

348. spacer 6.12|1329717|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 9, identity: 0.719

tcagccacctccttctcattgcccgcgagctg	CRISPR spacer
accgccaccgccttctcatttcccgccgacca	Protospacer
 * ****** ********** ***** ..*..

349. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
cccgagacgccgcggccgagctggtccaccac	Protospacer
** ****.**************** .     *

350. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.719

ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
gtattgatgccggggccgagcaggatgttgac	Protospacer
 ..  ******* ******** ****** * *

351. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_014818 (Asticcacaulis excentricus CB 48 plasmid pASTEX01, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
aggcgtggcccgcgccatgatcgcggccatgg	Protospacer
 .. * **************.****.*** *.

352. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
aggacaggctcgcggcatgaccgcgaccgaaa	Protospacer
 ... ****.**** *************.*.*

353. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
aggacaggctcgcggcatgaccgcgaccgaaa	Protospacer
 ... ****.**** *************.*.*

354. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
aggacaggctcgcggcatgaccgcgaccgaaa	Protospacer
 ... ****.**** *************.*.*

355. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
aggacaggctcgcggcatgaccgcgaccgaaa	Protospacer
 ... ****.**** *************.*.*

356. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
aggacaggctcgcggcatgaccgcgaccgaaa	Protospacer
 ... ****.**** *************.*.*

357. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010857 (Marinovum algicola DG 898 plasmid pMaD2, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggacaaggcccgcgccatggccgccaccggca	Protospacer
 .* .**************.**** ***.. *

358. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to CP058906 (Micromonospora phage pMLP1, complete sequence) position: , mismatch: 9, identity: 0.719

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
cgacaaggcccgcgccaccaccgcgaccgccg	Protospacer
*.* .************. *********.  .

359. spacer 6.18|1330083|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cacgtcatcgacccgatgctgagcctgttccc	CRISPR spacer
tcggtcatcgtgccgatgctgagcctggcacg	Protospacer
.  *******  *************** . * 

360. spacer 6.18|1330083|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022338 (Mameliella alba strain KU6B plasmid pKUB257, complete sequence) position: , mismatch: 9, identity: 0.719

cacgtcatcgacccgatgctgagcctgttccc	CRISPR spacer
agcgccatcgacccgctgctgagccaggccgt	Protospacer
 .**.********** ********* * .* .

361. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
atcccgctcctgcccgagccggtcctccaggc	Protospacer
.**     **************** .*****.

362. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033033 (Agrobacterium tumefaciens strain 12D1 plasmid pTi12D1, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
tactatcgccagcccgagccggtcgccgatcc	Protospacer
  * ** *** **************** *  .

363. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 9, identity: 0.719

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
cgcctctcgcagggcgtcccggccgcgccggt	Protospacer
*..*.  . **************** ** ***

364. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 9, identity: 0.719

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
cgcctctcgcagggcgtcccggccgcgccggt	Protospacer
*..*.  . **************** ** ***

365. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 9, identity: 0.727

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
tcgctgaccgaggcggccagcgccgtgatgctg	Protospacer
 . *************** ***** ***.   *

366. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.727

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
acgctgaccgaggcgggccgctccctgctcgcc	Protospacer
.. ************* **** ***** .**  

367. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 9, identity: 0.727

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
tcgctgaccgaggcggccagcgccgtgatgctg	Protospacer
 . *************** ***** ***.   *

368. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP024583 (Roseomonas sp. FDAARGOS_362 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.727

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
ctacgcgccgcggcggcccgcgccctgatcgca	Protospacer
 * *  .*** *****************.** .

369. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 9, identity: 0.727

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gagctgactgcggcggcccgcgccctggctccc	Protospacer
*  *****.* ****************.*.   

370. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP010826 (Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence) position: , mismatch: 9, identity: 0.727

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gccgccgcctaggccgcccgcgccctgaccgcc	Protospacer
*.* . .** **** ****************  

371. spacer 23.1|4654260|33|CP029188|CRISPRCasFinder matches to NC_030916 (Tsukamurella phage TPA4, complete genome) position: , mismatch: 9, identity: 0.727

ttccggggtccggtcggtgttgcgcggccccgg	CRISPR spacer
gggcgcggtccggtcggtgctgcgcggcgcgtc	Protospacer
   ** *************.******** *   

372. spacer 5.2|1318577|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP019608 (Tessaracoccus flavescens strain SST-39T plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

tctgggagcacgccgtgaagctcgcggcggac	CRISPR spacer
ggcaagagcaggccgtgaagcgcgcggccgcg	Protospacer
  ...***** ********** ****** *  

373. spacer 5.2|1318577|32|CP029188|CRISPRCasFinder,CRT matches to NZ_AP022334 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49b, complete sequence) position: , mismatch: 10, identity: 0.688

tctgggagcacgccgtgaagctcgcggcggac	CRISPR spacer
aggtgcagcaggccgagaagctcgcggcgctg	Protospacer
    * **** **** *************   

374. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020444 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggctgtgccgatcgaggcgcgcttcgccat	Protospacer
 ****.********** ******* . *  . 

375. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 10, identity: 0.688

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ggttgcgtgccgatcgtggcgcggacgggcgg	Protospacer
.    ****************** .***. *.

376. spacer 5.16|1319431|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034087 (Methylocystis rosea strain GW6 plasmid pGW6_1, complete sequence) position: , mismatch: 10, identity: 0.688

cgggccgtgaaggtcggcgtgggcgcggtcgg	CRISPR spacer
agggccgtgaaggtcggcggcggcatcaatgt	Protospacer
 ******************  ***.. . .* 

377. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014277 (Martelella sp. AD-3 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
tgtccgtcgaacaagtcaagcgtgtcgcctac	Protospacer
  . *************.* ******* * . 

378. spacer 5.18|1319553|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MN504636 (Pseudomonas phage Quinobequin-P09, complete genome) position: , mismatch: 10, identity: 0.688

gccgcgtcgaacaagtcgatcgtgtcgacggg	CRISPR spacer
ccattgtcgaacatgtcgatcgtttcgaacaa	Protospacer
 *  .******** ********* ****  ..

379. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
cgctgcggggagcggctgaccgtcgccctgac	Protospacer
    ******** ** *********** .*..

380. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
cgctgcggggagcggctgaccgtcgccctgac	Protospacer
    ******** ** *********** .*..

381. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
cgctgcggggagcggctgaccgtcgccctgac	Protospacer
    ******** ** *********** .*..

382. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_KJ599675 (Micrococcus sp. A7 plasmid pLMA7, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
accaccggggagcggatgaccgtcaccgtcac	Protospacer
.* . ******* ***********.***. ..

383. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP025617 (Micrococcus luteus strain SGAir0127 plasmid pSGAir0127) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
accaccggggagcggatgaccgtcaccgtcac	Protospacer
.* . ******* ***********.***. ..

384. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
cgctgcggggagcggctgaccgtcgccctgac	Protospacer
    ******** ** *********** .*..

385. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
cgctgcggggagcggctgaccgtcgccctgac	Protospacer
    ******** ** *********** .*..

386. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_KR152226 (Micrococcus sp. MG-2010-D12 plasmid pJD12, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
accaccggggagcggatgaccgtcaccgtcac	Protospacer
.* . ******* ***********.***. ..

387. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
cgctgcggggagcggctgaccgtcgccctgac	Protospacer
    ******** ** *********** .*..

388. spacer 6.3|1329168|32|CP029188|CRISPRCasFinder,CRT matches to NC_024972 (Micrococcus sp. A1 plasmid pLMA1, complete sequence) position: , mismatch: 10, identity: 0.688

gcgggcggggagaggatgaccgtcgccgcggt	CRISPR spacer
accaccggggagcggatgaccgtcaccgtcac	Protospacer
.* . ******* ***********.***. ..

389. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
acaaccggttccgcacctacctccccgacgag	Protospacer
 *.*****.******** ********.. .  

390. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
acaaccggttccgcacctacctccccgacgag	Protospacer
 *.*****.******** ********.. .  

391. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
agcacctgctccgcaccgacctcgccgtgcgg	Protospacer
   *** **************** **. *   

392. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to CP054928 (Streptomyces fulvissimus strain NA06532 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
agaaccagctccgcaccgacctcaccgacctg	Protospacer
  .***.**************** **..  * 

393. spacer 6.8|1329473|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023040 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

ccgaccggctccgcaccgacctccccaggatc	CRISPR spacer
agcacctgctccgcaccgacctcgccgtgcgg	Protospacer
   *** **************** **. *   

394. spacer 6.11|1329656|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 10, identity: 0.688

aacgcgtgggtggacccggtgaccaactgccg	CRISPR spacer
tctgcgtgggtgtacgcggtgaccaaatcaat	Protospacer
  .********* ** ********** *    

395. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032181 (Citrobacter freundii strain AR_0116 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
accggagggccgggccatgaccgcgaggcggg	Protospacer
   ***** *** *************   .*.

396. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_017966 (Tistrella mobilis KA081020-065 plasmid pTM2, complete sequence) position: , mismatch: 10, identity: 0.688

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggcccaggcccgcgccatgaccgtggccgcgc	Protospacer
 .   ******************.*.**. * 

397. spacer 6.18|1330083|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to MT855965 (Microcystis phage vB_MaeS-yong1, complete genome) position: , mismatch: 10, identity: 0.688

cacgtcatcgacccgatgctgagcctgttccc	CRISPR spacer
tggatgctcgactcgatgctgggcctgttcga	Protospacer
.. .*  *****.********.********  

398. spacer 6.20|1330205|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

gtcgatagcctgcccgagccggtcgcccaggt	CRISPR spacer
cacagggagctgccccagccggtcgcccgggt	Protospacer
  *.. .. ****** ************.***

399. spacer 6.21|1330266|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 10, identity: 0.688

catccggtccagggcgtcccggccgggcgggt	CRISPR spacer
tcgccggtcccgggcttcccggccggatcgcc	Protospacer
.  ******* **** **********.. * .

400. spacer 15.1|2569532|35|CP029188|CRISPRCasFinder matches to NZ_CP031957 (Phaeobacter sp. LSS9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

cggccccgcgcccgatcccgcagtaccccgacgca	CRISPR spacer
atgccccccgcccgatcccgcattaccatgaaatt	Protospacer
  ***** ************** **** .** .. 

401. spacer 15.1|2569532|35|CP029188|CRISPRCasFinder matches to NZ_CP010717 (Phaeobacter piscinae strain P18 plasmid pP18_b, complete sequence) position: , mismatch: 10, identity: 0.714

cggccccgcgcccgatcccgcagtaccccgacgca	CRISPR spacer
atgccccccgcccgatcccgcattaccatgaaatt	Protospacer
  ***** ************** **** .** .. 

402. spacer 15.1|2569532|35|CP029188|CRISPRCasFinder matches to NZ_CP010657 (Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence) position: , mismatch: 10, identity: 0.714

cggccccgcgcccgatcccgcagtaccccgacgca	CRISPR spacer
atgccccccgcccgatcccgcattaccatgaaatt	Protospacer
  ***** ************** **** .** .. 

403. spacer 15.1|2569532|35|CP029188|CRISPRCasFinder matches to NZ_CP010768 (Phaeobacter piscinae strain P13 plasmid pP13_a, complete sequence) position: , mismatch: 10, identity: 0.714

cggccccgcgcccgatcccgcagtaccccgacgca	CRISPR spacer
atgccccccgcccgatcccgcattaccatgaaatt	Protospacer
  ***** ************** **** .** .. 

404. spacer 15.1|2569532|35|CP029188|CRISPRCasFinder matches to NZ_CP010644 (Phaeobacter piscinae strain P36 plasmid pP36_a, complete sequence) position: , mismatch: 10, identity: 0.714

cggccccgcgcccgatcccgcagtaccccgacgca	CRISPR spacer
atgccccccgcccgatcccgcattaccatgaaatt	Protospacer
  ***** ************** **** .** .. 

405. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.697

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
acgctgaccgaggcgggccgctccctgctcacc	Protospacer
.. ************* **** ***** .*.  

406. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.697

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
acgctgaccgaggcgggccgctccctgcttgcc	Protospacer
.. ************* **** ***** ..*  

407. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.697

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gaggccgccgcggcggcccgcgccctggccggc	Protospacer
*   . .*** ****************.***. 

408. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 10, identity: 0.697

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
acgctgaccgaggcgggccgctccctgcttgcc	Protospacer
.. ************* **** ***** ..*  

409. spacer 20.1|3913141|33|CP029188|CRISPRCasFinder matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 10, identity: 0.697

gtcctgaccgaggcggcccgcgccctgaccgag	CRISPR spacer
gcgctgatcgaggcgggccgcgccctgcatctc	Protospacer
*. ****.******** **********  .   

410. spacer 5.7|1318882|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 11, identity: 0.656

atggccgtgccgatcgtggcgcgcgcggagga	CRISPR spacer
ctggccgtgcagatcgtggcccgcctaccacg	Protospacer
 ********* ********* *** ..  . .

411. spacer 6.4|1329229|32|CP029188|CRISPRCasFinder,CRT matches to KP027201 (Mycobacterium phage Sbash, complete genome) position: , mismatch: 11, identity: 0.656

acagagggcaccgccagtttcgccgacggcgc	CRISPR spacer
ggcagccgcaccgccagctccgccgacggcca	Protospacer
.  ..  **********.*.**********  

412. spacer 6.13|1329778|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 11, identity: 0.656

ccggagatgccgcggccgagctggatgtagcc	CRISPR spacer
ccggaggtgccgccgccgagctgcccacgttg	Protospacer
******.****** *********  .... . 

413. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
gccggaggcccgcgccatgtccacgaaggtcg	Protospacer
   **************** **.***  .  .

414. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggaggaggcccgcgccatgatggcggaggccg	Protospacer
 .******************. ***.  .  .

415. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggaggaggcccgcgccatgatggcggaggccg	Protospacer
 .******************. ***.  .  .

416. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029830 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggaggaggcccgcgccatgatggcggaggccg	Protospacer
 .******************. ***.  .  .

417. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggaggaggcccgcgccatgatggcggaggccg	Protospacer
 .******************. ***.  .  .

418. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggaggaggcccgcgccatgatggcggaggccg	Protospacer
 .******************. ***.  .  .

419. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggaggaggcccgcgccatgatggcggaggccg	Protospacer
 .******************. ***.  .  .

420. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
ggaggaggcccgcgccatgatggcggaggccg	Protospacer
 .******************. ***.  .  .

421. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NC_026585 (Mycobacteriophage Estave1, complete genome) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
gcgctcggccagcgccatgaccgcgaacacct	Protospacer
  .   **** *************** **   

422. spacer 6.14|1329839|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to KY385384 (Mycobacterium phage SimranZ1, complete genome) position: , mismatch: 11, identity: 0.656

caaggaggcccgcgccatgaccgcgaccaaga	CRISPR spacer
gcgctcggccagcgccatgaccgcgaacacct	Protospacer
  .   **** *************** **   

423. spacer 6.16|1329961|32|CP029188|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027671 (Simplicispira suum strain SC1-8 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.656

ccggccacaccgcacaggatgccgaccagtgg	CRISPR spacer
tgacagacagcgcccaggatgccgaccaggat	Protospacer
. .   *** *** *************** . 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2185145 : 2192855	7	Streptomyces_phage(66.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP029188|2185145:2192855|DBSCAN-SWA
CTCACCGCATACGGGTGGCCCACTCCTGCACCTTCTTGATCCGCTCCCGGATCTGCCCCGCCGTCGCCTCCGCGCTCGGCGGCCCCCCGCACACCCTCCGCAGCTCGGTGTGGATCACCCCGTGCGGCTTGCCGCTCTGGTGGACGTACGCGCCCACCATCGTGTTCAGCTGCTTCCTCAGCTCCAGCAGCTCCTTGTGCGAGACCACCGGACGGCGTTCCGCGGGCAGTTCCAGCAGGTCCGCCTCGGCGTCCGGCTTCCTGCGGCTGTGCGCGATCTGCCGCGCCTGGCGCTTCTGCAGCAGCAGTTGCACCTGGTCCGGCTCCAGCAGGCCCGGGATGCCCAGGTAGTCCTGCTCCTCCTCGCTGCCCGGGTGGGCCTGCATGCCGAACTCGGCGCCGTTGTACATCACCCGGTCGAAGACGGCGTCGGACTCCAGCGCCTCGAAGGGCAGCATGTCCTGCTCGCCGGTGTCCTCGTCCTGCTGCTTGTTCGCCTCGTCCATCTCCTTCTCGGACTCGGCGTAGGGGTCCTCCTCCCCTTCCTTCTTCGGGCGGTCGAGCGCGTGGTCCCGCTCGACCTCCATCTCGTTCGCGAAGCCCAGCAACATCGGGATGGTGGGCAGGAACACGGAGGCCGTCTCGCCGCGCCGCCGCGAGCGGACGAAACGGCCGACGGCCTGGGCGAAGAAGAGGGGCGTGGAGATGGTCGTGGCGTACACGCCGACCGCGAGCCGGGGGACGTCGACGCCCTCGGACACCATCCGGACGGCGACCATCCAGCGGTCCTGGCTCCCGCTGAACTCGTCGATGCGCTTCGAGGCGCCCGCGTCGTCGGACAGCACGACGGTCGCCTTCGTACCGGTGATCTCCCGGATGAGCTTGGCGTAGGCGCGTGCCGAGTCCTGGTCGGAGGCGATGACGAGGCCGCCCGCGTCCGGGATGGCCTTCCTGACCTCGCCGAGGCGCTGGTCGGCGGCGCGGAGCACGTTCGGCATCCAGTCGCCGCGCGGATCGAGCGCGGTGCGCCACGCCTGCGAGACGGCGTCCTTGGTCATCGGCTCGCCGAGCCGGGCCGCGACCTCGTCGCCCGCCTTGGTGCGCCAGCGCATGTTGCCGCTGTACGACAGGAAGATCACGGGACGGACGACGCCGTCGGCGAGGGCGTTGCCGTAGCCGTAGGTGTAGTCGGCGGCGGACCGGCGGATGCCGTCGTCGCCCTCCGCATAGGTGACGAAGGGGATCGGGTTGGTGTCGGAGCGGAAGGGCGTACCGGTGAGGGCGAGTCGGCGGGTGGCGGGTTCGAAGGCCTCCAGGCAGGCCTCGCCCCACGACTTGGAGTCGCCGGCGTGGTGGATCTCGTCGAGGATGACGAGGGTCTTGCGCTGCTCGCTGCGGTTGCGGTGCAGCATCGGGCGTACGCCGACACCGGCGTAGGTGACGGCGACCCCGTCGTACTCCTTGCTGAGCGGACCGGCGCTGTAGTCCGGGTCCAGCTTGATGCCGATGCGCGCGGCCGCGGCGGCCCACTGCTTCTTCAGGTGCTCGGTCGGCGCGACCACGGTGATCTGCTGCACCACGTGGTGGTGCAGCAGCCAGGAGGCCAGGGTGAGCGCGAACGTCGTCTTGCCGGCGCCGGGCGTCGCCACCGCGAGGAAGTCACGCGGCTGTTCCTGGACGTACTTCTCCATGGCGCCCTGCTGCCAGGCGCGCAGCTTGTTCGCCGTCCCCCAGGGGGCGCGGCCGGGAAAGGCGGGTGAGAGGTGGTGGGAGGCGGTAGTAGACACGGTCTCCGGTTCGAGGCAGGGCTGCGGCGTTACGTACGACAACCGGGCCACCCTACCGGTGCGGCCACCGTCGGGAGGGCCTCACCGGGCGGTGCGGGGACGGGGTGAGACCCGCCTCACAGAGACGGCCCGGAGCGTCCCGGCCCGGGCCTGCCGGCCTCGTTCACAGCGTCCGCAGCACGGCCCCGATCAGGGCCGGATCGCTCATCTCGCCTGCCGCCACGGACACGACCAGGTCGTACGCCCGGTCCTGGTCGACGTCGGCGGGGTCGGCGCCGTTGAGCGCGAGGAAGACCGCCGTCGACAGCCATGCCGTGCGCTTGTTGCCGTCGGCGAAGGGGTGGTTGGAGGCGATCGCGTGCAGCAGCGCGCCGGCCTGCTCCCGCAGGTCCGGGTACGCGGCGACTCCGTACACGCGGGAGCGCGGCCGGTGCACGGCGGACCCCAGGAGACCGTTCGCGCGCAGCACCGGCGGGCGGCCGCCGAAGGCGAGCCGACCCGGGCCGGCCGGGCGTCCGGCCGCGGAGCGGGAGCCGGGGGTCAGGCGGGGCGACGCTCGTGCAGCCGGGTGGCGACCCAGGCGCCGATCAGCGCGACCGCGGCCATGGGGAGGAACACCGCGGCGAAGGCGGCCGTGTGGCCGGCGCCCGCCACCCCGGCCTGGGCGACCGCGGCACCGTGGCCGCCCGCCGCGCCCCCGCCCAGGGCGGCGAAGGCGGCGCCGCCCGCTGCCAGGAGGAGGACGTTGGACAGTCCGTCGGAGATCTGGAGGGCGGCGGAGTTGGTGCCGGCCTCCGCCGGGGGCGACAGCTTCAGCAGCAGCACGCTGGTGGAGGAGATGACCAGGCCCATGCCGAAGCAGCCCCAGGCCCAGGCGACCGCGACGATCCACACCGGTACGGAGGGGATCAGCACGCTGGGCGCCGTGGCGACGGCCGTCGCGACGAGCACCATGCCCGCGACGGTCAGACGCTCCCGGTAGGCCTCGAGCCGCGGCCGGGACTGCACGAACGACCCCAGCGCCCAGGTCGCCCCGCCGACCGCGAGCGACAGGCCGGCCAGCGTCGGCGACAGCCCGCGCTGGGTGACCAGCATCAGCGGTACGAAGGACTCCGCCGCGATGAACGACCCGGCGGCCACTCCGCGCAGCAGCACCACCGACGGCAGCCCGCGCGCCGCGCGGAACGTGCCGCGCGGCATCAGACCGAGCGCGGCCGGCACGAGCAGCGCGGCGCCCGCGGCGGCCGGGACCAGCGAGAACCACCGCAGGTCCTGGGCCGCGTACTGGAGCACTGCGGCGCCGAGGGAGATGCCGAACGCCAGCCGGATCCTGCGCCGGTCCAGCGCCGGGACGGGGGCCTGGGGGTCCACCGGGCCCGAGGCCCGGCGCCGTATCGCGGGCAGTGCCAGTGCGAGCGGGACGACGACGAGGGCGGGGATGCCGACGAACACCCAGCGCCAGCCCAGCTGTTCGGTGACCGTGCCGGCCGCGAGCGGTCCCACGACGGAGGGGATCACCCAGCTCGCGGCGAACGCCGCCATGATCGTCGGCCTCAGGTGCTCGGGGTAGGCCCGGCCGACGACGACGTACAGCGCGACGATCACCAGTCCGCCGCCCAGCCCCTGGACGGCCCGCCCGGCGATGAACCACCACATCGTGGCGGCCGTCCCGGACAGCAGCAGGCCCAGGCCGAAGGCGGTGATCCCGGCGGTCAGCGGCCCGAGCGGCCCCCTGCGGTCGGCCCACTGCCCGGACAGCACCATCGCGAACAGGCTTGTCGTGAAGAACGCGGAGAAGGCGAACGCGTACAGCGGCACCCCGTCCAGCTCCCGCGCCGCCACCGGCATGGCGGTACCGACGGCGGTCGCCTCGAACGCGATCAGCAGGACGACGGAGACGATGCCGACGCTGAGGGCGCGCAGGCTCCGCCCGAGCACGCCACCGGTGAGGGTGGCGGTGGCGGGCGTGCCGGTGGCGGCCCCGGGCGTGCCGGTGGCGGGCGTGCCGGTGGCGGTGGCGGTCTTGACGATGCCGGGAACGCCGGCGGCCTGCTCGGCCGGCGGCTCACCGGCACGGGCCGCGTCAGGTGGTTCGAGGGCTGTCACGCGCTCCAGAGTAAGGGCCGTGGTTTGGGATGGCCCCTGTCGTGGGGTGGGGGTTCGGCTCGGCCGTTGGTCCTAGGCCGGGTGGGAGCGGCTCGTGGGCGGTCCGCTCTCCAGCGGCTCGGCGAAGAGGTCCGCGAAGGGCGTGAACGCGATTGGGTCGCCGACTGCAGTGGTTGGCACGTGGGGATCCTCCCGGCGGCGATGCATCACGTCGCGGCCGAGCGTCAACGCCTGGCCGCCTCCATGGACGGAGTGACCGGCCGCAGCGACCGGACGGAGCGCTGCACCCACTGGTTCCACACGCACTCGGCTCCGATCCCACTTCTTGCTGGGGGACCGGAGCCGGCACTTCGCGCTCTGCGCAGGAGCTACAGCCAGCCGTGTTCTGTCAGGCCGCTGTCCGCCTTCAGGTAGCCGAGGAGGCCCTCCTTCGGGTACTCGATGATGTCCTCGGGTAGTTCGTGGACGCTGAACCACTCCAGGCCGAGGCACTTCGCCGGCTCCCGGTTGACGGGCTCGCCACTCCACTGGGTGGCCTCGAAGAAGAAGCCGATCCGCTCCACGGTGTCGTCCTGCCGGTGGTGCACGATGTGGACCAGGCGCAGGTGATCGGGGTCTACCGCGACGCCAGTTTCCTCAAGCAGCTCCCGCGCGGCCCCGACAGTCAGGGCCTCGCCCCTGTCGAGTTTGCCCGACGGCATGTGCCAGCAGCCGTAGCCGTAGGGACCGCCTCGCTGGGAGAAGAGCAGTTTGTCGCCGTCGCGGACGATGACGTGGGTGTCGATGACAGGTTGTGCAGTTTCCAGACTCATGATCCCTGGGGGGGTGTCGGGGTCGGTGAGATTGCCGACGCTACCGGGGCGTCGGGCAGCGCGTCGGCGATTCGGGAGGCGATGTCCGACGCAGGGACATCGCTGGTGTCGAGGACCAGCACCTTTACGTTCCTGGCGACGAGGGCTTGGGCGGCTTCGGCGTAGAGGTCGACCTCGCGGCCGGGCGCAGCGGGGTCGCGGTGGAATCGGTGGCGGATTCCGCGCTCGGCTATCCGCTTGGCGATGAGGCCGGATGACGCGGTCAGGATGACCGCCAGGTCGGGCATCAGGACGTCCGCGTTCAGGGCGAGCAGGAAACCCAGCGACACGCCGTCGAGCCGCTGCAGGACCAGCGTCGAGGCGACGTAGCGGTCGCAGATGACCGTCTCTCCGGCGTCGAGCGGCGGTTTGACCTCGTGCTCGACGTGCGCGTACCGATCGGCCGTGACCAGGCAGGCCAAAGCGTGCCCGTGGATGTCGTTGGCGTTCTCGCGGGTGAAGATGCCGAGCTTGCTGGTGGAGGGTTCCAGGGTCTGGCGTACGGCCATGCCCCGCTCGGTCAGCTCTCGGCGCAGCGCCTCGACGGTGGTTGATTTTCCGACACCGCTGGGGCCGTCGAGGGTGATGAACAGGCCCCGTCGCCGGGTCATGCCGCGGCCCCCTGGTTTCCTTGGTTGCGATCATGCTGCTCGCGGGTGAGTGCGGCGAGGGTTGAGCGGACCCGGCTGAGGGGGACGCTTCCGAACTGGATGCCGACGGAGAAGTTGAACTCGTCGCGTTGACGCATCGACTCGTCGGCGCCGTCTTCGGTCAGGTCGACGTCTCCGTACGCGAGGAGCGCGGCGGGGTCGTTGCCGGCCTCGACGAGGGTCTGCCACACGGGTGTGCCGGGGTAGGGGCGGAACTCGAATACGCTCGCCCGTATGTCGCCGGGGTTGTTGTCGGCGATGCGCCAGAGGTTGTGGACGTGGCGGACGGTCGCCTCGATGTCGTCATGGCTCTCGCCCGGGAAGCCGAGGATGAAGTAGCCCTTGACTCCGATGCCGTGCTCGACCAGGCGGCGGGCGACGCGCTCGGTCATCGCGGCGTTGATGCGCTTGTCCATGACCTTCAGGATGCGGTCGCTGCCCGACTCGATACCGAGTGCTACCTCCCGCAGGCCGTTGGCGACAAGCCGGTCCAGCTCGCGGTCGGAGACCCGGTCGAGGACGTTGATGCGGCCGGTGGCGTCCCACACGTACCGCTCACCGATCTTGTGGCGGGTGAAGGCCTCCATCTGCTCCTCGATGACACGCCCGACGCCGAGAAACAGGTCATCAACGAACCGGAAGGCGGTGACGCCGTACTCCTCGTGGAGTGCGTCGAGCTCGCCGATGATGTTCTCGGGCGCGCGGACGCGGATCAGAACGTCGGGGTTCGCGCTGACGGCAGCCCCGCAGAACGTGCAGTTGTAGGGGCAGCCGCGACTGCCGACGATATTCGCTTCCGTGTGCCCGGAGCGGGCGGCGCCCTTGAGCAGTGGGGTGCCGCGGCTCACCGCAAGACGCCGGTCTGTTTCCGTGGGTGCGGCCTGGTAGGGGTCCTGCGGCAGGAACGCACGGTTGACGTAGGGCAGGGTGTCGATGTCCGGGCCGAGCATCTCCGCGCTCCGCTTCTTGTCCGTGAGGATGCCGGTGGCCCGGGTCCCGAGCAGGCGGTCCCGCCACAGCACTCCTGGCAGTTCGCGGCGGCGCTGCTCGTCGTCCAGGAGGGCGGCGACACGGAGCTCCCCCTCGCCGAGAACGAGAGCCCGCAGGTTGGCCATACGCGGGTCGGCGAGAACCCGGTCGGGCATAGCCTTGGCGTGGTGGCCGCCGACCATCAGGGCGATGCCAGGATCGAGCTGCGCCGCGATGCGCGCGGACATCTCGTAGGTGGGCGCGAGGAGGTTCATGGCCGCCCACCGTGGCGCGGCGTCGTTGATGAGCTTCGCTGTCTCCGTGATGCCGAGTCCGTGCGCTTCGGCGTCCAGGACACCCACGTTGTAACCGGCCTGCTGAGCGTACGTGGCGATGTAGGCCATGCCGAGCACGGGGAGTGTGTAGTCGTTGGTCCGCGGGCGTTGGTCGTAGTCACGCAGCGGTGCGTTCACGAACAGCGCGTCGAGCGGGCGGGCCGGATCGGCGCCTGCGACCAGCGGTAACTGCGACATTGATCCTCCTGGTCATCGCGCATGAGAACCCCAAGTGAGGGTGGAGAGGGTCAGGGTGTGCAGGGCGGTGCGGTCGGGGCCGGCCATGCCGGTCCACATGGGGCGGAACGACTTGTCCTTCTTGTCGGGCCAGTCGTGTTGGGGCGCGATCTGCGCGGCCCAGGTGCGCACGGCGAGGTCGTCGTGCGGGTAGATGCTGAAGTCGCCGGTGTAGTCGGCCGCGGCGGCGGAGGCAGTCCACGGGCCAATCCGGGGAACGCCGGTCAGCGCGGCCGCCAGATCGCCGGCGTCCATCTGCTGCCAGTCCGCGACGTGCAGCCGGTGGTGCGTGGCTGCGGCTTGCAGGACGCTGCGGTGGAACTTGGCTCCCACACTCGCGAACTGTGCGTCGCCGAGCGTCAGGACCTCCTCGGCGGTGGGGGCGACGGCCAGTTCGCCGTGCGGGGTGTCGATGGTGGTTCCGTAGGCCTTGCACCATGCCCGGTACAGCTTCCGGGCCTGCCCGGCACGCACCACCTGCCGGAGGATGGCTGTGCTGATCGCGTCCCACAGCCATGGGTTTGCCAGGCGCTGGGTGGGCCCGAGGTCATCGAGTCCTGCCTTGAGCGTGGCGGGAACGGTGCCGGGCAGGCACGCGGGGTCGGTGGTGACGACCGTGGGCTTCACGTCCTCCGTGCCGCTCACACAGCTCATGTGCAAGCCTTCCCGGTCCCAGTGCACGACCCAGATTCCGGACGCAGTGCGTACGGCGCGTGCGCGGTCTCCGGTCTCGGTCTCGATCCAGGCGGGGTGGTCGATCGTCAGGACGCCGTTCAT

Protein sequences of DBSCAN-SWA_1

>CP029188|2185145:2192855|2189404_2189842_-|AWI32978.1|DBSCAN-SWA
METAQPVIDTHVIVRDGDKLLFSQRGGPYGYGCWHMPSGKLDRGEALTVGAARELLEETGVAVDPDHLRLVHIVHHRQDDTVERIGFFFEATQWSGEPVNREPAKCLGLEWFSVHELPEDIIEYPKEGLLGYLKADSGLTEHGWL
>CP029188|2185145:2192855|2187093_2187474_-|AWI32977.1|DBSCAN-SWA
MTPGSRSAAGRPAGPGRLAFGGRPPVLRANGLLGSAVHRPRSRVYGVAAYPDLREQAGALLHAIASNHPFADGNKRTAWLSTAVFLALNGADPADVDQDRAYDLVVSVAAGEMSDPALIGAVLRTL
>CP029188|2185145:2192855|2192051_2192855_-|AWI29029.1|DBSCAN-SWA
MNGVLTIDHPAWIETETGDRARAVRTASGIWVVHWDREGLHMSCVSGTEDVKPTVVTTDPACLPGTVPATLKAGLDDLGPTQRLANPWLWDAISTAILRQVVRAGQARKLYRAWCKAYGTTIDTPHGELAVAPTAEEVLTLGDAQFASVGAKFHRSVLQAAATHHRLHVADWQQMDAGDLAAALTGVPRIGPWTASAAAADYTGDFSIYPHDDLAVRTWAAQIAPQHDWPDKKDKSFRPMWTGMAGPDRTALHTLTLSTLTWGSHAR
>CP029188|2185145:2192855|2185145_2186930_-|AWI29025.1|DBSCAN-SWA
MSTTASHHLSPAFPGRAPWGTANKLRAWQQGAMEKYVQEQPRDFLAVATPGAGKTTFALTLASWLLHHHVVQQITVVAPTEHLKKQWAAAAARIGIKLDPDYSAGPLSKEYDGVAVTYAGVGVRPMLHRNRSEQRKTLVILDEIHHAGDSKSWGEACLEAFEPATRRLALTGTPFRSDTNPIPFVTYAEGDDGIRRSAADYTYGYGNALADGVVRPVIFLSYSGNMRWRTKAGDEVAARLGEPMTKDAVSQAWRTALDPRGDWMPNVLRAADQRLGEVRKAIPDAGGLVIASDQDSARAYAKLIREITGTKATVVLSDDAGASKRIDEFSGSQDRWMVAVRMVSEGVDVPRLAVGVYATTISTPLFFAQAVGRFVRSRRRGETASVFLPTIPMLLGFANEMEVERDHALDRPKKEGEEDPYAESEKEMDEANKQQDEDTGEQDMLPFEALESDAVFDRVMYNGAEFGMQAHPGSEEEQDYLGIPGLLEPDQVQLLLQKRQARQIAHSRRKPDAEADLLELPAERRPVVSHKELLELRKQLNTMVGAYVHQSGKPHGVIHTELRRVCGGPPSAEATAGQIRERIKKVQEWATRMR
>CP029188|2185145:2192855|2190494_2192039_-|AWI29028.1|DBSCAN-SWA
MSQLPLVAGADPARPLDALFVNAPLRDYDQRPRTNDYTLPVLGMAYIATYAQQAGYNVGVLDAEAHGLGITETAKLINDAAPRWAAMNLLAPTYEMSARIAAQLDPGIALMVGGHHAKAMPDRVLADPRMANLRALVLGEGELRVAALLDDEQRRRELPGVLWRDRLLGTRATGILTDKKRSAEMLGPDIDTLPYVNRAFLPQDPYQAAPTETDRRLAVSRGTPLLKGAARSGHTEANIVGSRGCPYNCTFCGAAVSANPDVLIRVRAPENIIGELDALHEEYGVTAFRFVDDLFLGVGRVIEEQMEAFTRHKIGERYVWDATGRINVLDRVSDRELDRLVANGLREVALGIESGSDRILKVMDKRINAAMTERVARRLVEHGIGVKGYFILGFPGESHDDIEATVRHVHNLWRIADNNPGDIRASVFEFRPYPGTPVWQTLVEAGNDPAALLAYGDVDLTEDGADESMRQRDEFNFSVGIQFGSVPLSRVRSTLAALTREQHDRNQGNQGAAA
>CP029188|2185145:2192855|2189844_2190498_-|AWI29027.1|DBSCAN-SWA
MTRRRGLFITLDGPSGVGKSTTVEALRRELTERGMAVRQTLEPSTSKLGIFTRENANDIHGHALACLVTADRYAHVEHEVKPPLDAGETVICDRYVASTLVLQRLDGVSLGFLLALNADVLMPDLAVILTASSGLIAKRIAERGIRHRFHRDPAAPGREVDLYAEAAQALVARNVKVLVLDTSDVPASDIASRIADALPDAPVASAISPTPTPPQGS
>CP029188|2185145:2192855|2187470_2189036_-|AWI29026.1|DBSCAN-SWA
MTALEPPDAARAGEPPAEQAAGVPGIVKTATATGTPATGTPGAATGTPATATLTGGVLGRSLRALSVGIVSVVLLIAFEATAVGTAMPVAARELDGVPLYAFAFSAFFTTSLFAMVLSGQWADRRGPLGPLTAGITAFGLGLLLSGTAATMWWFIAGRAVQGLGGGLVIVALYVVVGRAYPEHLRPTIMAAFAASWVIPSVVGPLAAGTVTEQLGWRWVFVGIPALVVVPLALALPAIRRRASGPVDPQAPVPALDRRRIRLAFGISLGAAVLQYAAQDLRWFSLVPAAAGAALLVPAALGLMPRGTFRAARGLPSVVLLRGVAAGSFIAAESFVPLMLVTQRGLSPTLAGLSLAVGGATWALGSFVQSRPRLEAYRERLTVAGMVLVATAVATAPSVLIPSVPVWIVAVAWAWGCFGMGLVISSTSVLLLKLSPPAEAGTNSAALQISDGLSNVLLLAAGGAAFAALGGGAAGGHGAAVAQAGVAGAGHTAAFAAVFLPMAAVALIGAWVATRLHERRPA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI29025.1|2185145_2186930_-	ATP-dependent helicase	I4AZM6	Saccharomonospora_phage	7.2e-92	37.5
AWI32977.1|2187093_2187474_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	1.0e-16	46.2
AWI29026.1|2187470_2189036_-	MFS transporter	NA	NA	NA	NA
AWI32978.1|2189404_2189842_-	DNA mismatch repair protein MutT	A0A0M4RQ80	Streptomyces_phage	2.3e-60	74.3
AWI29027.1|2189844_2190498_-	dTMP kinase	A0A0M4QTT3	Streptomyces_phage	3.1e-53	55.3
AWI29028.1|2190494_2192039_-	B12-binding domain-containing radical SAM protein	A0A0M4R1U9	Streptomyces_phage	9.6e-202	69.5
AWI29029.1|2192051_2192855_-	hypothetical protein	A0A0M4RBB7	Streptomyces_phage	8.6e-69	51.9