CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP017459	Staphylococcus nepalensis strain JS9 chromosome, complete genome	1 crisprs	csa3,WYL,DEDDh,cas3,DinG	16	18	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP017459_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP017459_2

1204753-1204836

Orphan

Consensus_repeat	Method
TTGTGAAATAAATCACAATAAACGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP017459_2

>merge|CP017459|2|1204753-1204836|CRISPRCasFinder
TTGTGAAATAAATCACAATAAACGATTGCTCTTTAGCGAAGAAAGTGTTATATTTAAATTGTGAAATAAATCACAATAAGCGAT

>CP017459|2|1|1204753-1204836|CRISPRCasFinder
TTGTGAAATAAATCACAATAAACGAT	TGCTCTTTAGCGAAGAAAGTGTTATATTTAAA
TTGTGAAATAAATCACAATAAGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP017459.1\|AWI44265.1\|1212344_1212656_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238089
CP017459.1\|AWI44261.1\|1205973_1206375_+\|repressor	unknown	unknown	gnl\|CDD\|130944
CP017459.1\|AWI44262.1\|1206731_1207292_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase	unknown	unknown	gnl\|CDD\|377744
CP017459.1\|AWI44259.1\|1203709_1204534_+\|lysophospholipase	unknown	unknown	gnl\|CDD\|225176
CP017459.1\|AWI44260.1\|1204867_1205824_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
CP017459.1\|AWI44250.1\|1193126_1193600_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274357
CP017459.1\|AWI44263.1\|1207288_1208242_-\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
CP017459.1\|AWI44251.1\|1193822_1194047_+\|hypothetical-protein	unknown	unknown	unknown
CP017459.1\|AWI44257.1\|1201724_1202183_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
CP017459.1\|AWI44254.1\|1198838_1199882_+\|riboflavin-biosynthesis-protein-RibD	unknown	unknown	gnl\|CDD\|273015
CP017459.1\|AWI44255.1\|1199888_1200521_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236455
CP017459.1\|AWI44264.1\|1208351_1209521_+\|multidrug-MFS-transporter	unknown	unknown	gnl\|CDD\|340887
CP017459.1\|AWI44253.1\|1196674_1198156_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|226906
CP017459.1\|AWI44266.1\|1213171_1214431_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367519
CP017459.1\|AWI44269.1\|1216908_1217310_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378938
CP017459.1\|AWI44258.1\|1202439_1203441_-\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|223580
CP017459.1\|AWI44267.1\|1214560_1216198_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
CP017459.1\|AWI44252.1\|1194210_1195065_+\|autolysin	unknown	unknown	gnl\|CDD\|226656
CP017459.1\|AWI44268.1\|1216194_1216896_+\|16S-rRNA-pseudouridine(516)-synthase	unknown	unknown	gnl\|CDD\|224108
CP017459.1\|AWI44256.1\|1200531_1201713_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774

Protein	Function_ID	Function_description	E-value
CP017459.1\|AWI44265.1\|1212344_1212656_+\|sulfurtransferase	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	3.304e-21
CP017459.1\|AWI44261.1\|1205973_1206375_+\|repressor	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.99217e-13
CP017459.1\|AWI44262.1\|1206731_1207292_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.88223e-67
CP017459.1\|AWI44259.1\|1203709_1204534_+\|lysophospholipase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	1.2193e-58
CP017459.1\|AWI44260.1\|1204867_1205824_+\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	5.33588e-177
CP017459.1\|AWI44250.1\|1193126_1193600_-\|hypothetical-protein	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.63475e-11
CP017459.1\|AWI44263.1\|1207288_1208242_-\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
CP017459.1\|AWI44257.1\|1201724_1202183_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	8.03504e-87
CP017459.1\|AWI44254.1\|1198838_1199882_+\|riboflavin-biosynthesis-protein-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	1.1482e-93
CP017459.1\|AWI44255.1\|1199888_1200521_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	2.03674e-91
CP017459.1\|AWI44264.1\|1208351_1209521_+\|multidrug-MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.19869e-82
CP017459.1\|AWI44253.1\|1196674_1198156_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	2.06877e-78
CP017459.1\|AWI44266.1\|1213171_1214431_-\|hypothetical-protein	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
CP017459.1\|AWI44269.1\|1216908_1217310_+\|hypothetical-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	5.25901e-06
CP017459.1\|AWI44258.1\|1202439_1203441_-\|proline-dehydrogenase	gnl\|CDD\|223580	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism].	2.91641e-65
CP017459.1\|AWI44267.1\|1214560_1216198_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	6.49237e-121
CP017459.1\|AWI44252.1\|1194210_1195065_+\|autolysin	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	3.12416e-104
CP017459.1\|AWI44268.1\|1216194_1216896_+\|16S-rRNA-pseudouridine(516)-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.12266e-87
CP017459.1\|AWI44256.1\|1200531_1201713_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0

>CP017459.1|AWI44259.1|1203709_1204534_+|lysophospholipase
MWKWETENEAKGVIVIAHNMLEHTGRYAYVITMLRRNGYHVIMGDLPGQGQTTRSNKGQIENFEVYHEHVLEWIRIANEYKLPTYFLGVGLGGLIILNLLEKVEVPIEGLMLISPLLEFKKNNKTRKDKILSNVGKLTKDTRFKVGITVEDLTRNDEVIEEAKEDQLMLQKVTYHWYKQIIEIMKETVTHLKDIKPLPVLLMYGLEDKVSDIPTMHLVKDNIETEELYFKAWKGLYHEIHNEPERDEVMRYILAFLNNSTSNIGFIVHDEHELS
>CP017459.1|AWI44258.1|1202439_1203441_-|proline-dehydrogenase
MPIVKNFFIGLSNNPFLNKTAKEIGPMFGAKKVVAGNTITDLVDTIERLNNKGITVTVDCLGEFVLNEGEAIQAKDQILEVMYAIYNHSLDGHMSIKLSQLGSEFDIDLAYRNLREILLKANEFGNMHINIDTEKYDSLFDITQVLDRLKGEFKNVGTVIQAYLYKADALIDKYPELRLRMVKGAYKENENIAYQTKEDIDENYIRLIKKRLLNANNVTSIATHDDKIITHIKQFIKDNNIEKDKYEFQMLYGFRSDLAGLLAREGNHFCIYVPYGDDWFSYFMRRLAERPQNLNLMFLELMKPEILKKTGFVASLLTAIGVSSALIYKVLKK
>CP017459.1|AWI44257.1|1201724_1202183_+|6,7-dimethyl-8-ribityllumazine-synthase
MNFEGKLIGSNLKVAIVVSRFNDFITNRLLDGAKDTLIRHEVSAGNIDVAYVPGAFEIPLVAKKLAQKGEYDAVITLGCVIRGSTSHYDYVCNEVAKGVSKANDVTDTPVIFGILTTENIEQAVERAGTKAGNKGSEAAVSAIEMANLLSEI
>CP017459.1|AWI44256.1|1200531_1201713_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MQLDSIEKALKALKNGESIIVVDDENRENEGDLVAITEWMYENTVNFMAKYGRGLICAPISKKIAQDLELNPMVNHNSDIYGTQFTVSIDHIDTTTGISADERMLTAKALIDEQTKANDFNRPGHLFPLIAQDNGVLARRGHTEASVDLALLTGAKPAALICEIMNEDGSMAKGDDLEAFKNKHQLVMISIEDLENYRKNTDAPLEAKAKVQLPTDYGNFDMYGFSTQNNEEEIVAIVSGEIKETENVRIHSACLTGDIFHSQRCDCGEQLAASMEYISENGGIILYLPQEGRGIGLINKLKAYELIEQGYDTVSANIALGFEEDLRDYQNAAKILKYLGVKRVNLLSNNPKKFGSLENYGIDIAKRIDLIVPTNKYNQDYMKTKKEKMGHLI
>CP017459.1|AWI44255.1|1199888_1200521_+|riboflavin-synthase-subunit-alpha
MFTGIVEEIGTIKKMTTQQSIVNLTIDCQTILSDMHIGDSISVNGVCLTVVCFDNQTFSVQVIKGTENKTYLNRLNQSDEVNLERAMSGQGRFGGHFVLGHTDEVAKITRIQNSDNSKIVTIKPSKSIINQMVQQGSITIDGVSLTVFQLKESEFDIHLIPETRKSTILNQKRVGDPVHIETDMLFKYVEKIVGNNDSGLSSEKLKSFGF
>CP017459.1|AWI44254.1|1198838_1199882_+|riboflavin-biosynthesis-protein-RibD
MSQYLNYAIQLAKMVDGQTGINPPVGAVVVNQGRIVGIGAHLQKGDKHAEVQALDMANETAAGGTIYISLEPCSHYGSTPPCVNKIIDFGIKQVVYAVKDTTLTSRGDEVLQHAGVKVEFRHKPEAEALYKDFFITKRQGIPEVTVKVSCSLDGKQATDKGESKWITNKSVKNDVFMLRHKHDAVITGTGTLNADNPQYTTRIEEGKHPIRIILSKSGRIDFDLDMFNQSNVPIWIYTEQEKLKSDIEHVEVIHCSNCSLENILKDLYQKGIGRVLVEAGPTITSEFLQSNYTNELILYYAPKMIGGSGDYQFFKTENVFNLSEAPQFEIVNSQVLEQNIKLELRKK
>CP017459.1|AWI44253.1|1196674_1198156_+|pyridine-nucleotide-disulfide-oxidoreductase
MRIAIIGMGTAGVSLLKELVKYDEFDQMKVDVYDNPKNMGQGIPFQNDSDQLLINLPAKQMSLNLKNEREFYEWYQQQSIFKFSNPEYLPRFIFGHYMKDYLETYHKQYKNIQMIKKEVLEVFIDADIGETNIKYVVCTSEKPDCQQQYDIVFLTVGTLSYHDPYQLKGTPGYIQTPYPTYDTLNEVDSTDRIAIIGTGLASLDVIRFVTAHHPNLPISVTSRKGHLPSVRGDMPEIQFKYVTPENFNKIKKENLGNVPLEDALTLFRKDCTYYDIPVEKLVHRRKGDPIADLTYDLEHKEILGKFQSILELAKENLNWIWNSFSRDDQKTFLRNYQSILKENSNPMPPRTARLIINHIQNGQIEIKKGLEDVKHDGQHFWFKYEDDFKAIDKFDVVINATGSKSHLSELDNDDQLILNLENRQVVQAHPLGGIQIIPETNQIISPRYGTLKNMFALGQLTNGINQSRNGVTMIVKQAVSVVENLLNRDQNKC
>CP017459.1|AWI44252.1|1194210_1195065_+|autolysin
MTKHKKGSILSVIGLLIVLVVAAVIVFSMISDQIFFKEVNQQEKVEQLNITLDKAAKKQIDNYTSQQVSSKNNDTWRDASSTEIKAAMNSSNFIESDTQKYQFLELDKYQGIDENRIKRMLIDNPILLEHSDDFIKAAKEKHVNEVYLISHAILETGSAKSELSSGVEIDGKKYYNFFGVGALDEDPVKTGAEYAKKHGWDTPEKAISGGANFIHGHFLSNKDQNTLYSMRWNPKKPGEHQYATDIKWAESNASLMADFYKDMKTEGKYYKYFVYKDDKKHQDT
>CP017459.1|AWI44251.1|1193822_1194047_+|hypothetical-protein
MDYAHLNLEHFFARHNDLDTIKDKSDFVMINNLTKEMMYRDGEIEGTIDLNRYYYKNRSQAVSFIIMEYNKSQE
>CP017459.1|AWI44250.1|1193126_1193600_-|hypothetical-protein
MPFEQLYFQFKHIIFILLNKYRIKYNREEYTQLLTIKMWELTQNYLPHHTYSLGQFLYNRLNYYLIDLFRCQNQKTNILYLTEQIDEQTNNTDITNNHLMYQHFLQQLTEKERQWLILKLSGYKQSELACMLNCSISTVKNYRKKVQKKYYKFYSPK
>CP017459.1|AWI44260.1|1204867_1205824_+|L-lactate-dehydrogenase
MKYSKGNKVVLIGDGAVGSSYAFALVSQGIADELVIIDLDETKVHGDVADLNHSAPYGGSPIKIKAGSYKDCSNADLIVITAGAAQKPGETRLDLVEKNTRIFKEIVSTIMQTGFNGIFLIATNPVDVLSYVTQKVSGLPKAQVIGSGTILDTARFKYELAREFNVSPWSVDAQIIGEHGDSELAVWSQANIAGQSLYDILKDNPDKQHRIDEIFINTRDAAYDIIKAKGATYYGIAMGLIRITQAILKNQNVVLPVSSYLNGEYGQNDVYIGVPTLINRNGAVKVYETQLNSSESKLFENSAIILKEMQNKINQLIA
>CP017459.1|AWI44261.1|1205973_1206375_+|repressor
MGKTITDMVDSVLRLEHVLNDIDDIFEKVQKQYKMSKEEILILLTLWQEGSMTLKEMDDFVQIKSYKRTRTYNDLVEKEWIIKERPVNDERTVIIHFNEDLEAQREALLDYFKEEIDEKSSSIQSSLKSILDL
>CP017459.1|AWI44262.1|1206731_1207292_-|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase
MKIERILPFSKTLIQQHVSADSIVIDATCGNGNDTEFLAQQVPDGKVYGFDIQDIAIQNTKTKTKTFRHVHLIHDSHANIKQYIPREERGHIDAAIFNLGYLPKGDKSIVTNPNSTLAAINSIFDILAPEGIIVLVIYHGHEEGKTERDALLNYLQHFDQNKAHILQYQFINQQNHPPFICAIEKR
>CP017459.1|AWI44263.1|1207288_1208242_-|TIGR01212-family-radical-SAM-protein
MGQFFPYAFENKRYHTWNYHLKNKFGQKIFKVAIDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRVDPIDVQFQQIKDRMHEKWHEGQYIAYFQAFTNTHAPVEVLREKYETALKEPGVVGLSIGTRPDCLPDDVVEYLAELNERTYLWVELGLQTVHQKTSDLINRAHDMETYYEGVAKLRKHNINVCTHIINGLPEEDYDMMMETAKEVAQMDVQGIKIHLLHLLKGTPMVKQYEKGMLEFMSQDDYTNLVCDQLEILPKEMIVHRITGDGPIDLMVGPMWSVNKWEVLNEIDDELARRNSYQGKNYESIIKS
>CP017459.1|AWI44264.1|1208351_1209521_+|multidrug-MFS-transporter
MNMPKSVWWLVIGMALNITGSSFLWPLNTIYMNEVLDKSLTMAGLVLMINSFGMVIGNLLGGNLFDKLGGYPTIMIGTVICLSSTTLLNFFHGWPWYAVWLVCLGFGGGMIIPAIYALAGAIWPKGGRQTFNAIYLAQNLGVAIGAASGGFVAELSFNYIFIANLLMYIAFAIVAVSQFNIKLDVKVKSNDAMSLLSKAYRPQFIALSLICVMFSICWIAYIQWESTIASFTQVLNISMSQYSLLWTVNGIMILVAQPLIIPIIRLLKGNLKHQMYVGIGIFIISFFVTSFAEQFSVFMVGMIILTLGEMFVWPAVPTIANQLAPKGKEGSFQGYVNSAATVGKAFGPLIGGVVVDMFNMQVMFLSMISLLAIALIFLTFYDRQLPKDI
>CP017459.1|AWI44265.1|1212344_1212656_+|sulfurtransferase
METISVDELKSKILNSNPIQIIDVRTDEETAMGVIPEAETIPMDQIPDNLNHFNSNDTYYIICKAGGRSAQVVQYLERNGVHAVNVEGGMDAWGDEALDIRSI
>CP017459.1|AWI44266.1|1213171_1214431_-|hypothetical-protein
MYQTIIIGGGPSGLMAAAAASQNSNKVLLIEKKKGLGRKLKISGGGRCNVTNRLPYEEIIKNIPGNGKFLYSPFSVFDNESIIHFFESRGVSLKEEDHGRMFPVSNKAQDVVDALIHTIEKNNVTVKQETVVHGIEHTQKQTFKITTDNQETIESHSLVIATGGTSVPKTGSTGDGYKFAKQLGHTITELFPTEVPITSPEPFIKDRRLKGLSLKNVALSVLKKNEKKRITHQMDMIFTHFGVSGPAALRCSQFVYKEQKNQKQQNIKMQIDVFPDLSQAQVEAKIRKLLKDTPDKYVKNSLHGLIEERYLLYMLELANISEELTAHHISNEQFNKLVNLFKAFTFTVNGTLSIEKAFVTGGGVSLKEIEPKTMMSKHVPGLFMCGELLDIHGYTGGYNITSALVTGHISGTNASKFQL
>CP017459.1|AWI44267.1|1214560_1216198_+|polysaccharide-biosynthesis-protein
MSESKELVRGTFLITLSILITKVLGVLYIIPFYAIIGGEEKLAPFNYAYTPYNIAIAVATAGVPLAASKYVSKYNALGAYKVSEKLYKSSFIVMTITGFIGFFILYLLAPTIATITLANKSGAKGGWSVEDITWIIRIISMVVIFIPLLATWRGVFQGYKSMGPTAVSEVIEQIARILFILIGSYLVLNVFNGSVLQANGIATFAAAIGAVAGIFTLWYYWKKRKPNIEKMVATDVSGINVSYGKMYKEIISYSIPFVIVSLNFPLFNLVDQFTHNGALDLAGVPSRLHDYFFTILNMTTNKIVMIPTSLSAGFAVSLIPFITKTYESGELSEMHRQIRTSLGVLMYITVPASLGIMALALPLYTVFYSYNIDGSQLLFYYAPVAILIGLLSVTASMLQGIDKQKLTVFVILVAVVLKVVLNTPLIMAFHTAGAILSTAIALLFAVLCNFYILKKYANFDFSETWLHFCKIFLYGLIMMVAVELSSFLLQMFISPETKFGALSILIISVIIGMLVYGGITMKTKLADQFLGEIPNKVRRKLGIIK
>CP017459.1|AWI44268.1|1216194_1216896_+|16S-rRNA-pseudouridine(516)-synthase
MRIDKFLANMGVGTRTEVKQLLKSGSVFINEQKEKSPKKQIDPNNDIIKINNEIIQYIDKVYLMLNKPKGYISATADNQHQTVIELVKSYQFLEIFPVGRLDKDTEGLLLITNDGAFNHELMSPTKHVSKTYEVISEKNITNNDINSFKMGIELNEGLAMPATLVKSDEPYKSFVTIYEGRYHQVKRMFHAIDNEVLALKRVSIGELKLDESLGPGEYRHLTQQDFKQLGLNL
>CP017459.1|AWI44269.1|1216908_1217310_+|hypothetical-protein
MSKLLKAIIGVGGAAAAVVLSKKENRDKLKDEYSKYKSNPESYKQNAKDIASQISSKAGETYNEVKQDPKGYASRVKQDPKGFINEQKDRFKGVNEKEEEHVEEARFTDEGAAAPSNNLRVVTEEELKNNKNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP017459_1	1.13\|72832\|18\|CP017459\|CRT	72832-72849	18	CP017459.1	71926-71943	0	1.0
CP017459_1	1.36\|74176\|18\|CP017459\|CRT	74176-74193	18	CP017459.1	71926-71943	0	1.0
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	CP017459.1	71938-71967	1	0.967
CP017459_1	1.10\|72658\|24\|CP017459\|CRT	72658-72681	24	CP017459.1	71938-71961	1	0.958
CP017459_1	1.13\|72832\|18\|CP017459\|CRT	72832-72849	18	CP017459.1	71878-71895	1	0.944
CP017459_1	1.15\|72916\|18\|CP017459\|CRT	72916-72933	18	CP017459.1	71926-71943	1	0.944
CP017459_1	1.17\|73018\|18\|CP017459\|CRT	73018-73035	18	CP017459.1	71926-71943	1	0.944
CP017459_1	1.19\|73126\|54\|CP017459\|CRT	73126-73179	54	CP017459.1	71938-71991	1	0.981
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	CP017459.1	71938-71967	1	0.967
CP017459_1	1.23\|73360\|18\|CP017459\|CRT	73360-73377	18	CP017459.1	71926-71943	1	0.944
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	CP017459.1	71938-71967	1	0.967
CP017459_1	1.36\|74176\|18\|CP017459\|CRT	74176-74193	18	CP017459.1	71878-71895	1	0.944
CP017459_1	1.39\|74308\|42\|CP017459\|CRT	74308-74349	42	CP017459.1	71926-71967	1	0.976
CP017459_1	1.12\|72772\|42\|CP017459\|CRT	72772-72813	42	CP017459.1	71926-71967	2	0.952
CP017459_1	1.15\|72916\|18\|CP017459\|CRT	72916-72933	18	CP017459.1	71878-71895	2	0.889
CP017459_1	1.17\|73018\|18\|CP017459\|CRT	73018-73035	18	CP017459.1	71878-71895	2	0.889
CP017459_1	1.23\|73360\|18\|CP017459\|CRT	73360-73377	18	CP017459.1	71878-71895	2	0.889
CP017459_1	1.29\|73684\|48\|CP017459\|CRT	73684-73731	48	CP017459.1	71938-71985	2	0.958
CP017459_1	1.46\|74794\|24\|CP017459\|CRT	74794-74817	24	CP017459.1	71938-71961	2	0.917
CP017459_1	1.47\|74836\|30\|CP017459\|CRT	74836-74865	30	CP017459.1	71938-71967	2	0.933
CP017459_1	1.51\|75040\|30\|CP017459\|CRT	75040-75069	30	CP017459.1	71938-71967	2	0.933

1. spacer 1.13|72832|18|CP017459|CRT matches to position: 71926-71943, mismatch: 0, identity: 1.0

tagtgacgcagatgcgga	CRISPR spacer
tagtgacgcagatgcgga	Protospacer
******************

2. spacer 1.36|74176|18|CP017459|CRT matches to position: 71926-71943, mismatch: 0, identity: 1.0

tagtgacgcagatgcgga	CRISPR spacer
tagtgacgcagatgcgga	Protospacer
******************

3. spacer 1.8|72538|30|CP017459|CRT matches to position: 71938-71967, mismatch: 1, identity: 0.967

tgcggatgccgacagtgatgcggatgctga	CRISPR spacer
tgcggatgccgacagtgatgcggatgcgga	Protospacer
*************************** **

4. spacer 1.10|72658|24|CP017459|CRT matches to position: 71938-71961, mismatch: 1, identity: 0.958

tgcggatgcagacagtgatgcgga	CRISPR spacer
tgcggatgccgacagtgatgcgga	Protospacer
********* **************

5. spacer 1.13|72832|18|CP017459|CRT matches to position: 71878-71895, mismatch: 1, identity: 0.944

tagtgacgcagatgcgga	CRISPR spacer
tagtgacgcagacgcgga	Protospacer
************.*****

6. spacer 1.15|72916|18|CP017459|CRT matches to position: 71926-71943, mismatch: 1, identity: 0.944

tagtgacgcagatgccga	CRISPR spacer
tagtgacgcagatgcgga	Protospacer
*************** **

7. spacer 1.17|73018|18|CP017459|CRT matches to position: 71926-71943, mismatch: 1, identity: 0.944

tagtgacgcggatgcgga	CRISPR spacer
tagtgacgcagatgcgga	Protospacer
*********.********

8. spacer 1.19|73126|54|CP017459|CRT matches to position: 71938-71991, mismatch: 1, identity: 0.981

tgcggatgccgacagtgatgcggatgcggatgcagacagtgatgcggatgcgga	CRISPR spacer
tgcggatgccgacagtgatgcggatgcggatgccgacagtgatgcggatgcgga	Protospacer
********************************* ********************

9. spacer 1.20|73198|30|CP017459|CRT matches to position: 71938-71967, mismatch: 1, identity: 0.967

tgcggatgcagacagtgatgcggatgcgga	CRISPR spacer
tgcggatgccgacagtgatgcggatgcgga	Protospacer
********* ********************

10. spacer 1.23|73360|18|CP017459|CRT matches to position: 71926-71943, mismatch: 1, identity: 0.944

tagtgacgcggatgcgga	CRISPR spacer
tagtgacgcagatgcgga	Protospacer
*********.********

11. spacer 1.35|74128|30|CP017459|CRT matches to position: 71938-71967, mismatch: 1, identity: 0.967

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgccgacagtgatgcggatgcgga	Protospacer
******************.***********

12. spacer 1.36|74176|18|CP017459|CRT matches to position: 71878-71895, mismatch: 1, identity: 0.944

tagtgacgcagatgcgga	CRISPR spacer
tagtgacgcagacgcgga	Protospacer
************.*****

13. spacer 1.39|74308|42|CP017459|CRT matches to position: 71926-71967, mismatch: 1, identity: 0.976

tagtgacgcagatgcggatgccgacagtgatgcggatgctga	CRISPR spacer
tagtgacgcagatgcggatgccgacagtgatgcggatgcgga	Protospacer
*************************************** **

14. spacer 1.12|72772|42|CP017459|CRT matches to position: 71926-71967, mismatch: 2, identity: 0.952

tagtgacgcggatgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tagtgacgcagatgcggatgccgacagtgatgcggatgcgga	Protospacer
*********.********************.***********

15. spacer 1.15|72916|18|CP017459|CRT matches to position: 71878-71895, mismatch: 2, identity: 0.889

tagtgacgcagatgccga	CRISPR spacer
tagtgacgcagacgcgga	Protospacer
************.** **

16. spacer 1.17|73018|18|CP017459|CRT matches to position: 71878-71895, mismatch: 2, identity: 0.889

tagtgacgcggatgcgga	CRISPR spacer
tagtgacgcagacgcgga	Protospacer
*********.**.*****

17. spacer 1.23|73360|18|CP017459|CRT matches to position: 71878-71895, mismatch: 2, identity: 0.889

tagtgacgcggatgcgga	CRISPR spacer
tagtgacgcagacgcgga	Protospacer
*********.**.*****

18. spacer 1.29|73684|48|CP017459|CRT matches to position: 71938-71985, mismatch: 2, identity: 0.958

tgcggatgcagacagtgatgcggatgcggatgccgacagtgatgccga	CRISPR spacer
tgcggatgccgacagtgatgcggatgcggatgccgacagtgatgcgga	Protospacer
********* *********************************** **

19. spacer 1.46|74794|24|CP017459|CRT matches to position: 71938-71961, mismatch: 2, identity: 0.917

tgctgatgccgacagtgatgctga	CRISPR spacer
tgcggatgccgacagtgatgcgga	Protospacer
*** ***************** **

20. spacer 1.47|74836|30|CP017459|CRT matches to position: 71938-71967, mismatch: 2, identity: 0.933

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
tgcggatgccgacagtgatgcggatgcgga	Protospacer
********* ***************** **

21. spacer 1.51|75040|30|CP017459|CRT matches to position: 71938-71967, mismatch: 2, identity: 0.933

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
tgcggatgccgacagtgatgcggatgcgga	Protospacer
********* ***************** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP017459_1	1.10\|72658\|24\|CP017459\|CRT	72658-72681	24	MH617210	Microviridae sp. isolate ctdb759, complete genome	14-37	3	0.875
CP017459_1	1.14\|72868\|30\|CP017459\|CRT	72868-72897	30	NZ_CP032923	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence	490018-490047	3	0.9
CP017459_1	1.14\|72868\|30\|CP017459\|CRT	72868-72897	30	NZ_CP032923	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence	490174-490203	3	0.9
CP017459_1	1.37\|74212\|30\|CP017459\|CRT	74212-74241	30	NZ_CP032923	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence	490018-490047	3	0.9
CP017459_1	1.37\|74212\|30\|CP017459\|CRT	74212-74241	30	NZ_CP032923	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence	490174-490203	3	0.9
CP017459_1	1.46\|74794\|24\|CP017459\|CRT	74794-74817	24	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	231429-231452	3	0.875
CP017459_1	1.46\|74794\|24\|CP017459\|CRT	74794-74817	24	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	566524-566547	3	0.875
CP017459_1	1.46\|74794\|24\|CP017459\|CRT	74794-74817	24	CP003676	Staphylococcus warneri SG1 plasmid clone pvSw7 genomic sequence	2897-2920	3	0.875
CP017459_1	1.66\|76114\|24\|CP017459\|CRT	76114-76137	24	NZ_AP019659	Vibrio ponticus strain DSM 16217 plasmid pVPon1	4885-4908	3	0.875
CP017459_1	1.10\|72658\|24\|CP017459\|CRT	72658-72681	24	NZ_CP042500	Enterobacter sp. E76 plasmid pE76_001, complete sequence	113503-113526	4	0.833
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	MH617210	Microviridae sp. isolate ctdb759, complete genome	14-43	5	0.833
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	280871-280900	5	0.833
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	204242-204271	5	0.833
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	MH617210	Microviridae sp. isolate ctdb759, complete genome	14-43	5	0.833
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	MH617210	Microviridae sp. isolate ctdb759, complete genome	14-43	5	0.833
CP017459_1	1.5\|72364\|30\|CP017459\|CRT	72364-72393	30	KC117377	Halovirus HVTV-1, complete genome	89400-89429	6	0.8
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	33677-33706	6	0.8
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	CP053317	Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence	202555-202584	6	0.8
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	NZ_CP042500	Enterobacter sp. E76 plasmid pE76_001, complete sequence	113497-113526	6	0.8
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	390632-390661	6	0.8
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	559091-559120	6	0.8
CP017459_1	1.24\|73396\|30\|CP017459\|CRT	73396-73425	30	KC117377	Halovirus HVTV-1, complete genome	89400-89429	6	0.8
CP017459_1	1.25\|73444\|30\|CP017459\|CRT	73444-73473	30	KC117377	Halovirus HVTV-1, complete genome	89400-89429	6	0.8
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP024924	Sphingomonas sp. Cra20 plasmid unnamed, complete sequence	104157-104186	6	0.8
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP050100	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence	114943-114972	6	0.8
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP053443	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence	91054-91083	6	0.8
CP017459_1	1.47\|74836\|30\|CP017459\|CRT	74836-74865	30	MH617210	Microviridae sp. isolate ctdb759, complete genome	14-43	6	0.8
CP017459_1	1.51\|75040\|30\|CP017459\|CRT	75040-75069	30	MH617210	Microviridae sp. isolate ctdb759, complete genome	14-43	6	0.8
CP017459_1	1.56\|75364\|30\|CP017459\|CRT	75364-75393	30	LT598654	Phage NCTB genome assembly, complete genome: monopartite	9430-9459	6	0.8
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	CP052500	Klebsiella pneumoniae strain B17KP0021 plasmid unnamed	2462-2491	7	0.767
CP017459_1	1.8\|72538\|30\|CP017459\|CRT	72538-72567	30	NZ_CP012887	Mycobacterium chimaera strain AH16 plasmid unnamed2, complete sequence	24505-24534	7	0.767
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	NZ_CP021084	Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence	90973-91002	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1439808-1439837	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1306080-1306109	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	33002-33031	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022118	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence	197207-197236	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022118	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence	197882-197911	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	169983-170012	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1305102-1305131	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1350519-1350548	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1350510-1350539	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1306072-1306101	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1305426-1305455	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1306063-1306092	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	CP053317	Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence	201880-201909	7	0.767
CP017459_1	1.35\|74128\|30\|CP017459\|CRT	74128-74157	30	NZ_CP045959	Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence	113715-113744	7	0.767
CP017459_1	1.47\|74836\|30\|CP017459\|CRT	74836-74865	30	MF754113	Vibrio phage vB_VpaS_KF3, complete genome	74168-74197	7	0.767
CP017459_1	1.47\|74836\|30\|CP017459\|CRT	74836-74865	30	MF754114	Vibrio phage vB_VpaS_KF4, complete genome	19572-19601	7	0.767
CP017459_1	1.47\|74836\|30\|CP017459\|CRT	74836-74865	30	NZ_CP029776	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence	96470-96499	7	0.767
CP017459_1	1.49\|74944\|30\|CP017459\|CRT	74944-74973	30	MW117966	Synechococcus phage S-H9-1, complete genome	82655-82684	7	0.767
CP017459_1	1.51\|75040\|30\|CP017459\|CRT	75040-75069	30	MF754113	Vibrio phage vB_VpaS_KF3, complete genome	74168-74197	7	0.767
CP017459_1	1.51\|75040\|30\|CP017459\|CRT	75040-75069	30	MF754114	Vibrio phage vB_VpaS_KF4, complete genome	19572-19601	7	0.767
CP017459_1	1.51\|75040\|30\|CP017459\|CRT	75040-75069	30	NZ_CP029776	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence	96470-96499	7	0.767
CP017459_1	1.56\|75364\|30\|CP017459\|CRT	75364-75393	30	MW117966	Synechococcus phage S-H9-1, complete genome	82655-82684	7	0.767
CP017459_1	1.7\|72490\|30\|CP017459\|CRT	72490-72519	30	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	650305-650334	8	0.733
CP017459_1	1.7\|72490\|30\|CP017459\|CRT	72490-72519	30	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	143662-143691	8	0.733
CP017459_1	1.7\|72490\|30\|CP017459\|CRT	72490-72519	30	NZ_CP050090	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence	124630-124659	8	0.733
CP017459_1	1.7\|72490\|30\|CP017459\|CRT	72490-72519	30	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	347108-347137	8	0.733
CP017459_1	1.7\|72490\|30\|CP017459\|CRT	72490-72519	30	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	476047-476076	8	0.733
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	MF754113	Vibrio phage vB_VpaS_KF3, complete genome	74168-74197	8	0.733
CP017459_1	1.20\|73198\|30\|CP017459\|CRT	73198-73227	30	MF754114	Vibrio phage vB_VpaS_KF4, complete genome	19572-19601	8	0.733
CP017459_1	1.21\|73246\|30\|CP017459\|CRT	73246-73275	30	NZ_CP012656	Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK08, complete sequence	8225-8254	8	0.733
CP017459_1	1.21\|73246\|30\|CP017459\|CRT	73246-73275	30	NZ_CP012656	Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK08, complete sequence	196-225	8	0.733
CP017459_1	1.21\|73246\|30\|CP017459\|CRT	73246-73275	30	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	143662-143691	8	0.733
CP017459_1	1.47\|74836\|30\|CP017459\|CRT	74836-74865	30	NZ_CP042500	Enterobacter sp. E76 plasmid pE76_001, complete sequence	113497-113526	8	0.733
CP017459_1	1.49\|74944\|30\|CP017459\|CRT	74944-74973	30	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	473642-473671	8	0.733
CP017459_1	1.49\|74944\|30\|CP017459\|CRT	74944-74973	30	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	143662-143691	8	0.733
CP017459_1	1.50\|74992\|30\|CP017459\|CRT	74992-75021	30	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	650305-650334	8	0.733
CP017459_1	1.50\|74992\|30\|CP017459\|CRT	74992-75021	30	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	143662-143691	8	0.733
CP017459_1	1.50\|74992\|30\|CP017459\|CRT	74992-75021	30	NZ_CP050090	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence	124630-124659	8	0.733
CP017459_1	1.50\|74992\|30\|CP017459\|CRT	74992-75021	30	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	347108-347137	8	0.733
CP017459_1	1.50\|74992\|30\|CP017459\|CRT	74992-75021	30	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	476047-476076	8	0.733
CP017459_1	1.51\|75040\|30\|CP017459\|CRT	75040-75069	30	NZ_CP042500	Enterobacter sp. E76 plasmid pE76_001, complete sequence	113497-113526	8	0.733
CP017459_1	1.56\|75364\|30\|CP017459\|CRT	75364-75393	30	NZ_CP009619	Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence	143662-143691	8	0.733
CP017459_1	1.56\|75364\|30\|CP017459\|CRT	75364-75393	30	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	473642-473671	8	0.733
CP017459_1	1.56\|75364\|30\|CP017459\|CRT	75364-75393	30	HQ634174	Cyanophage MED4-213, complete genome	164081-164110	8	0.733

1. spacer 1.10|72658|24|CP017459|CRT matches to MH617210 (Microviridae sp. isolate ctdb759, complete genome) position: , mismatch: 3, identity: 0.875

tgcggatgcagacagtgatgcgga	CRISPR spacer
agcggatgccgaccgtgatgcgga	Protospacer
 ******** *** **********

2. spacer 1.14|72868|30|CP017459|CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 3, identity: 0.9

tgcggatgcagatagtgacgcggatgcgga	CRISPR spacer
cgcggatgcagatgctgacgcggatgcgga	Protospacer
.************. ***************

3. spacer 1.14|72868|30|CP017459|CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 3, identity: 0.9

tgcggatgcagatagtgacgcggatgcgga	CRISPR spacer
cgcggatgcagatgctgacgcggatgcgga	Protospacer
.************. ***************

4. spacer 1.37|74212|30|CP017459|CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 3, identity: 0.9

tgcggatgcagatagtgacgcggatgcgga	CRISPR spacer
cgcggatgcagatgctgacgcggatgcgga	Protospacer
.************. ***************

5. spacer 1.37|74212|30|CP017459|CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 3, identity: 0.9

tgcggatgcagatagtgacgcggatgcgga	CRISPR spacer
cgcggatgcagatgctgacgcggatgcgga	Protospacer
.************. ***************

6. spacer 1.46|74794|24|CP017459|CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

tgctgatgccgacagtgatgctga	CRISPR spacer
cgctgctgccgacggtgatgctga	Protospacer
.**** *******.**********

7. spacer 1.46|74794|24|CP017459|CRT matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 3, identity: 0.875

tgctgatgccgacagtgatgctga	CRISPR spacer
tgctgataccgaccgtgatgctgc	Protospacer
*******.***** *********

8. spacer 1.46|74794|24|CP017459|CRT matches to CP003676 (Staphylococcus warneri SG1 plasmid clone pvSw7 genomic sequence) position: , mismatch: 3, identity: 0.875

tgctgatgccgacagtgatgctga	CRISPR spacer
cgctgatgccgacgctgatgctga	Protospacer
.************. *********

9. spacer 1.66|76114|24|CP017459|CRT matches to NZ_AP019659 (Vibrio ponticus strain DSM 16217 plasmid pVPon1) position: , mismatch: 3, identity: 0.875

tgctgatgcagacagtgatgctga	CRISPR spacer
tgatgatgcagacattgatgctgc	Protospacer
** *********** ********

10. spacer 1.10|72658|24|CP017459|CRT matches to NZ_CP042500 (Enterobacter sp. E76 plasmid pE76_001, complete sequence) position: , mismatch: 4, identity: 0.833

tgcggatgcagacagtgatgcgga	CRISPR spacer
ggcggatgcaaacagtgatgcgtt	Protospacer
 *********.***********

11. spacer 1.8|72538|30|CP017459|CRT matches to MH617210 (Microviridae sp. isolate ctdb759, complete genome) position: , mismatch: 5, identity: 0.833

tgcggatgccgacagtgatgcggatgctga-	CRISPR spacer
agcggatgccgaccgtgatgcgga-gcgggc	Protospacer
 ************ ********** ** *.

12. spacer 1.8|72538|30|CP017459|CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 5, identity: 0.833

tgcg-gatgccgacagtgatgcggatgctga	CRISPR spacer
-gcgcgccgccgacagtgtggcggatgctga	Protospacer
 *** * .**********  ***********

13. spacer 1.8|72538|30|CP017459|CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 5, identity: 0.833

tgcg-gatgccgacagtgatgcggatgctga	CRISPR spacer
-gcgcgccgccgacagtgtggcggatgctga	Protospacer
 *** * .**********  ***********

14. spacer 1.20|73198|30|CP017459|CRT matches to MH617210 (Microviridae sp. isolate ctdb759, complete genome) position: , mismatch: 5, identity: 0.833

tgcggatgcagacagtgatgcggatgcgga-	CRISPR spacer
agcggatgccgaccgtgatgcgga-gcgggc	Protospacer
 ******** *** ********** ****.

15. spacer 1.35|74128|30|CP017459|CRT matches to MH617210 (Microviridae sp. isolate ctdb759, complete genome) position: , mismatch: 5, identity: 0.833

tgcggatgccgacagtgacgcggatgcgga-	CRISPR spacer
agcggatgccgaccgtgatgcgga-gcgggc	Protospacer
 ************ ****.***** ****.

16. spacer 1.5|72364|30|CP017459|CRT matches to KC117377 (Halovirus HVTV-1, complete genome) position: , mismatch: 6, identity: 0.8

tgcggattcagatagtgacgcggatgcgga	CRISPR spacer
tgcggactcagatagtgacgaggtggaggc	Protospacer
******.************* **  * **

17. spacer 1.8|72538|30|CP017459|CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatgccgacagtgatgcggatgctga	CRISPR spacer
gggggatgccgtcagtgatacggatgccgt	Protospacer
 * ******** *******.*******.*

18. spacer 1.8|72538|30|CP017459|CRT matches to CP053317 (Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatgccgacagtgatgcggatgctga	CRISPR spacer
gggggatgccgtcagtgatacggatgccgt	Protospacer
 * ******** *******.*******.*

19. spacer 1.20|73198|30|CP017459|CRT matches to NZ_CP042500 (Enterobacter sp. E76 plasmid pE76_001, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatgcagacagtgatgcg---gatgcgga	CRISPR spacer
ggcggatgcaaacagtgatgcgttcaatgc---	Protospacer
 *********.***********   .****

20. spacer 1.20|73198|30|CP017459|CRT matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatg--cagacagtgatgcggatgcgga	CRISPR spacer
--ccgctgcccagacagtgatgcgcatgcggc	Protospacer
  * * **  ************** ******

21. spacer 1.20|73198|30|CP017459|CRT matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatg--cagacagtgatgcggatgcgga	CRISPR spacer
--cagttgcccagacagtgatgcgcatgcggc	Protospacer
  *.* **  ************** ******

22. spacer 1.24|73396|30|CP017459|CRT matches to KC117377 (Halovirus HVTV-1, complete genome) position: , mismatch: 6, identity: 0.8

tgcggattcagatagtgacgcggatgcgga	CRISPR spacer
tgcggactcagatagtgacgaggtggaggc	Protospacer
******.************* **  * **

23. spacer 1.25|73444|30|CP017459|CRT matches to KC117377 (Halovirus HVTV-1, complete genome) position: , mismatch: 6, identity: 0.8

tgcggattcagatagtgacgcggatgcgga	CRISPR spacer
tgcggactcagatagtgacgaggtggaggc	Protospacer
******.************* **  * **

24. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP024924 (Sphingomonas sp. Cra20 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
accttatgccgacagtgacgccgatccgga	Protospacer
  *  **************** *** ****

25. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP050100 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
ggcgtcggccgacagtgacgaggatgcggt	Protospacer
 ***   ************* ********

26. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 6, identity: 0.8

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
ggcgtcggccgacagtgacgaggatgcggt	Protospacer
 ***   ************* ********

27. spacer 1.47|74836|30|CP017459|CRT matches to MH617210 (Microviridae sp. isolate ctdb759, complete genome) position: , mismatch: 6, identity: 0.8

tgcggatgcagacagtgatgcggatgctga-	CRISPR spacer
agcggatgccgaccgtgatgcgga-gcgggc	Protospacer
 ******** *** ********** ** *.

28. spacer 1.51|75040|30|CP017459|CRT matches to MH617210 (Microviridae sp. isolate ctdb759, complete genome) position: , mismatch: 6, identity: 0.8

tgcggatgcagacagtgatgcggatgctga-	CRISPR spacer
agcggatgccgaccgtgatgcgga-gcgggc	Protospacer
 ******** *** ********** ** *.

29. spacer 1.56|75364|30|CP017459|CRT matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 6, identity: 0.8

tgctgatgcagacagtgacgcagatgctga	CRISPR spacer
ttctgatgaagacagtgatgcagatggtct	Protospacer
* ****** *********.******* *

30. spacer 1.8|72538|30|CP017459|CRT matches to CP052500 (Klebsiella pneumoniae strain B17KP0021 plasmid unnamed) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgatgcggatgctga	CRISPR spacer
ctctgacagcgacagtgattcggatgctga	Protospacer
. * **.. ********** **********

31. spacer 1.8|72538|30|CP017459|CRT matches to NZ_CP012887 (Mycobacterium chimaera strain AH16 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgatgcggatgctga	CRISPR spacer
cgaccatgccggcattgatgcggatgctgg	Protospacer
.*   ******.** **************.

32. spacer 1.20|73198|30|CP017459|CRT matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgcagacagtgatgcggatgcgga	CRISPR spacer
cgtcgttgaagaccgtgatgcggatgcggg	Protospacer
.*. * ** **** ***************.

33. spacer 1.35|74128|30|CP017459|CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

34. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

35. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
gggtgatgccgtcagtgacacggatgccgt	Protospacer
 *  ******* *******.******* *

36. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022118 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
gggtgatgccgtcagtgacacggatgccgt	Protospacer
 *  ******* *******.******* *

37. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022118 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
gggtgatgccgtcagtgacacggatgccgt	Protospacer
 *  ******* *******.******* *

38. spacer 1.35|74128|30|CP017459|CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
caccgtttgcgacggtgacgcggatgcgga	Protospacer
..* * *  ****.****************

39. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

40. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

41. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

42. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

43. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

44. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
tgcggatgcggacagcgacgcgggattggg	Protospacer
********* *****.*******.  .**.

45. spacer 1.35|74128|30|CP017459|CRT matches to CP053317 (Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
gggtgatgccgtcagtgacacggatgccgt	Protospacer
 *  ******* *******.******* *

46. spacer 1.35|74128|30|CP017459|CRT matches to NZ_CP045959 (Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence) position: , mismatch: 7, identity: 0.767

tgcggatgccgacagtgacgcggatgcgga	CRISPR spacer
gggtgatgccgtcagtgacacggatgccgt	Protospacer
 *  ******* *******.******* *

47. spacer 1.47|74836|30|CP017459|CRT matches to MF754113 (Vibrio phage vB_VpaS_KF3, complete genome) position: , mismatch: 7, identity: 0.767

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
agatgatgcagacggtgatgcgggtgcttc	Protospacer
 *  *********.*********.****

48. spacer 1.47|74836|30|CP017459|CRT matches to MF754114 (Vibrio phage vB_VpaS_KF4, complete genome) position: , mismatch: 7, identity: 0.767

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
agatgatgcagacggtgatgcgggtgcttc	Protospacer
 *  *********.*********.****

49. spacer 1.47|74836|30|CP017459|CRT matches to NZ_CP029776 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

-----tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
tcgtctg-----gcagaccgtgatggggatgctga	Protospacer
     **     ****** ****** *********

50. spacer 1.49|74944|30|CP017459|CRT matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 7, identity: 0.767

tgcggat--gcagacagtgacgcagatgctga	CRISPR spacer
--cagactagcagacagtgaagcagatgctct	Protospacer
  *.**.  *********** *********

51. spacer 1.51|75040|30|CP017459|CRT matches to MF754113 (Vibrio phage vB_VpaS_KF3, complete genome) position: , mismatch: 7, identity: 0.767

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
agatgatgcagacggtgatgcgggtgcttc	Protospacer
 *  *********.*********.****

52. spacer 1.51|75040|30|CP017459|CRT matches to MF754114 (Vibrio phage vB_VpaS_KF4, complete genome) position: , mismatch: 7, identity: 0.767

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
agatgatgcagacggtgatgcgggtgcttc	Protospacer
 *  *********.*********.****

53. spacer 1.51|75040|30|CP017459|CRT matches to NZ_CP029776 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

-----tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
tcgtctg-----gcagaccgtgatggggatgctga	Protospacer
     **     ****** ****** *********

54. spacer 1.56|75364|30|CP017459|CRT matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 7, identity: 0.767

tgctgat--gcagacagtgacgcagatgctga	CRISPR spacer
--cagactagcagacagtgaagcagatgctct	Protospacer
  * **.  *********** *********

55. spacer 1.7|72490|30|CP017459|CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttc	Protospacer
 ********.********.***** .*

56. spacer 1.7|72490|30|CP017459|CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
taacgatgcagaaagtgccgcagatgcatc	Protospacer
*. .******** **** *********.

57. spacer 1.7|72490|30|CP017459|CRT matches to NZ_CP050090 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttt	Protospacer
 ********.********.***** .*

58. spacer 1.7|72490|30|CP017459|CRT matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttc	Protospacer
 ********.********.***** .*

59. spacer 1.7|72490|30|CP017459|CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttc	Protospacer
 ********.********.***** .*

60. spacer 1.20|73198|30|CP017459|CRT matches to MF754113 (Vibrio phage vB_VpaS_KF3, complete genome) position: , mismatch: 8, identity: 0.733

tgcggatgcagacagtgatgcggatgcgga	CRISPR spacer
agatgatgcagacggtgatgcgggtgcttc	Protospacer
 *  *********.*********.***

61. spacer 1.20|73198|30|CP017459|CRT matches to MF754114 (Vibrio phage vB_VpaS_KF4, complete genome) position: , mismatch: 8, identity: 0.733

tgcggatgcagacagtgatgcggatgcgga	CRISPR spacer
agatgatgcagacggtgatgcgggtgcttc	Protospacer
 *  *********.*********.***

62. spacer 1.21|73246|30|CP017459|CRT matches to NZ_CP012656 (Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK08, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggatgcagatagtgacgcagatgcgga	CRISPR spacer
agcggatgcagatcatgacgcagacaacaa	Protospacer
 ************ .*********..  .*

63. spacer 1.21|73246|30|CP017459|CRT matches to NZ_CP012656 (Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK08, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggatgcagatagtgacgcagatgcgga	CRISPR spacer
agcggatgcagatcatgacgcagacaacaa	Protospacer
 ************ .*********..  .*

64. spacer 1.21|73246|30|CP017459|CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggatgcagatagtgacgcagatgcgga	CRISPR spacer
taacgatgcagaaagtgccgcagatgcatc	Protospacer
*.  ******** **** *********.

65. spacer 1.47|74836|30|CP017459|CRT matches to NZ_CP042500 (Enterobacter sp. E76 plasmid pE76_001, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
ggcggatgcaaacagtgatgcgttcaatgc	Protospacer
 *********.***********  .. **

66. spacer 1.49|74944|30|CP017459|CRT matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggatgcagacagtgacgcagatgctga	CRISPR spacer
tttcaatgtagacagtgacgcagatgaagc	Protospacer
* . .***.*****************  *

67. spacer 1.49|74944|30|CP017459|CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggatgcagacagtgacgcagatgctga	CRISPR spacer
taacgatgcagaaagtgccgcagatgcatc	Protospacer
*.  ******** **** *********

68. spacer 1.50|74992|30|CP017459|CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttc	Protospacer
 ********.********.***** .*

69. spacer 1.50|74992|30|CP017459|CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
taacgatgcagaaagtgccgcagatgcatc	Protospacer
*. .******** **** *********.

70. spacer 1.50|74992|30|CP017459|CRT matches to NZ_CP050090 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b4, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttt	Protospacer
 ********.********.***** .*

71. spacer 1.50|74992|30|CP017459|CRT matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttc	Protospacer
 ********.********.***** .*

72. spacer 1.50|74992|30|CP017459|CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagatagtgacgcagatgcgga	CRISPR spacer
agctgatgcggatagtgatgcagaaacttc	Protospacer
 ********.********.***** .*

73. spacer 1.51|75040|30|CP017459|CRT matches to NZ_CP042500 (Enterobacter sp. E76 plasmid pE76_001, complete sequence) position: , mismatch: 8, identity: 0.733

tgcggatgcagacagtgatgcggatgctga	CRISPR spacer
ggcggatgcaaacagtgatgcgttcaatgc	Protospacer
 *********.***********  .. **

74. spacer 1.56|75364|30|CP017459|CRT matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagacagtgacgcagatgctga	CRISPR spacer
taacgatgcagaaagtgccgcagatgcatc	Protospacer
*. .******** **** *********

75. spacer 1.56|75364|30|CP017459|CRT matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 8, identity: 0.733

tgctgatgcagacagtgacgcagatgctga	CRISPR spacer
tttcaatgtagacagtgacgcagatgaagc	Protospacer
* ...***.*****************  *

76. spacer 1.56|75364|30|CP017459|CRT matches to HQ634174 (Cyanophage MED4-213, complete genome) position: , mismatch: 8, identity: 0.733

tgctgatgcagacagtgacgcagatgctga	CRISPR spacer
ctgtgatccagacagtgacacagatggaaa	Protospacer
.  **** ***********.******  .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1039986 : 1047928

Staphylococcus_phage(71.43%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI44118.1\|1039986_1040271_+	co-chaperone GroES	A0A221S386	uncultured_virus	1.4e-13	48.4
AWI44119.1\|1040323_1041946_+	chaperonin GroL	A0A240F779	uncultured_virus	3.2e-155	53.2
AWI44120.1\|1042014_1043184_-	recombinase	A0A1W6JPB2	Staphylococcus_phage	1.9e-178	78.9
AWI44121.1\|1043194_1043830_-	transcriptional regulator	A0A1W6JQE6	Staphylococcus_phage	1.8e-69	64.3
AWI44122.1\|1044001_1044214_+	transcriptional regulator	A0A1W6JQE8	Staphylococcus_phage	2.5e-20	70.3
AWI44123.1\|1044217_1044520_+	excisionase	A0A1W6JPE8	Staphylococcus_phage	2.7e-36	78.5
AWI44124.1\|1044691_1044925_+	hypothetical protein	NA	NA	NA	NA
AWI44125.1\|1044927_1045236_+	hypothetical protein	NA	NA	NA	NA
AWI44126.1\|1046224_1047928_+	hypothetical protein	Q4ZE73	Staphylococcus_phage	1.8e-132	43.9

DBSCAN-SWA_2

1177740 : 1193600

Staphylococcus_phage(92.31%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI44237.1\|1177740_1179150_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.9e-168	60.1
AWI44238.1\|1179163_1180168_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.3e-87	50.6
AWI44239.1\|1180164_1180401_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.0e-30	73.5
AWI44240.1\|1180463_1180946_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.4e-44	55.6
AWI45763.1\|1180953_1181721_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	1.3e-95	68.2
AWI44241.1\|1183700_1185290_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	4.7e-260	81.4
AWI44242.1\|1185669_1186866_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.1e-192	85.1
AWI44243.1\|1186961_1187870_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	4.2e-88	76.1
AWI44244.1\|1188165_1189002_+	glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	1.3e-112	70.4
AWI44245.1\|1189082_1189439_-	camphor resistance protein CrcB	NA	NA	NA	NA
AWI45764.1\|1189435_1189759_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	9.5e-27	54.2
AWI44246.1\|1189861_1190167_-	hypothetical protein	NA	NA	NA	NA
AWI44247.1\|1190454_1191168_+	transaldolase	E3SKN5	Synechococcus_phage	4.2e-19	34.4
AWI45765.1\|1191491_1192097_+	hypothetical protein	NA	NA	NA	NA
AWI44248.1\|1192231_1192681_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	6.3e-21	46.1
AWI44249.1\|1192688_1193111_-	hypothetical protein	NA	NA	NA	NA
AWI44250.1\|1193126_1193600_-	hypothetical protein	A0A2H4PQT5	Staphylococcus_phage	7.9e-22	43.3

DBSCAN-SWA_3

1196674 : 1203441

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI44253.1\|1196674_1198156_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.5e-13	67.3
AWI44254.1\|1198838_1199882_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	4.8e-128	62.7
AWI44255.1\|1199888_1200521_+	riboflavin synthase subunit alpha	A0A2H4PQS5	Staphylococcus_phage	2.0e-68	61.0
AWI44256.1\|1200531_1201713_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.7e-166	71.8
AWI44257.1\|1201724_1202183_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.5e-57	76.3
AWI44258.1\|1202439_1203441_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.4e-123	65.8

DBSCAN-SWA_4

1343325 : 1352430

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI44370.1\|1343325_1344327_+	Holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	5.8e-06	29.9
AWI44371.1\|1344329_1345355_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AWI44372.1\|1345375_1346515_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	7.1e-85	44.7
AWI44373.1\|1346533_1346794_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.3e-06	44.1
AWI45768.1\|1347160_1349389_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.3e-29	32.9
AWI44374.1\|1349619_1351896_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.4e-69	29.0
AWI44375.1\|1351911_1352430_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.9e-30	46.9

DBSCAN-SWA_5

1835786 : 1870197

Staphylococcus_phage(53.85%)

tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI44796.1\|1835786_1837760_-	hypothetical protein	U5PWM6	Bacillus_phage	1.9e-40	33.0
AWI44797.1\|1837756_1837987_-	hypothetical protein	NA	NA	NA	NA
AWI44798.1\|1839578_1840442_-\|tail	phage tail protein	A0A1W6JQE9	Staphylococcus_phage	5.0e-83	63.9
AWI44799.1\|1840444_1847446_-\|tail	phage tail tape measure protein	Q8LTH9	Staphylococcus_phage	2.5e-220	39.5
AWI44800.1\|1847674_1848025_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	4.3e-25	62.2
AWI44801.1\|1848152_1848620_-\|tail	phage tail protein	A0A1D6Z291	Staphylococcus_phage	3.6e-43	62.8
AWI44802.1\|1849379_1849775_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	1.1e-40	64.1
AWI44803.1\|1849771_1850197_-	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	1.5e-35	59.7
AWI44804.1\|1850193_1850553_-	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	7.8e-22	47.5
AWI45790.1\|1850542_1850797_-	hypothetical protein	A0A2H4JAA9	uncultured_Caudovirales_phage	2.5e-14	53.8
AWI44805.1\|1850919_1852119_-	hypothetical protein	Q4ZD74	Staphylococcus_phage	7.5e-85	45.8
AWI44806.1\|1852131_1852860_-	peptidase	A0A2H4J8Y7	uncultured_Caudovirales_phage	5.8e-48	53.1
AWI44807.1\|1852822_1854007_-\|portal	phage portal protein	A0A1W6JPQ9	Staphylococcus_phage	1.0e-102	47.8
AWI44808.1\|1854022_1855693_-\|terminase	terminase	A8AT95	Listeria_phage	2.2e-199	60.2
AWI44809.1\|1855689_1856052_-	hypothetical protein	A0A2H4JAH7	uncultured_Caudovirales_phage	8.7e-29	60.2
AWI44810.1\|1856224_1856560_-	alpha/beta hydrolase	D2XR61	Bacillus_phage	3.2e-25	55.5
AWI44811.1\|1856764_1857199_-	hypothetical protein	Q4ZD23	Staphylococcus_phage	2.4e-33	53.9
AWI44812.1\|1857257_1857506_-	hypothetical protein	NA	NA	NA	NA
AWI44813.1\|1857507_1857813_-	hypothetical protein	S4UCP8	Listeria_phage	4.3e-29	67.7
AWI44814.1\|1857975_1858206_-	hypothetical protein	A0A2H4JGT2	uncultured_Caudovirales_phage	1.0e-19	73.7
AWI44815.1\|1858205_1858571_-	hypothetical protein	NA	NA	NA	NA
AWI44816.1\|1858620_1858824_-	hypothetical protein	A0A0D3MVJ6	Staphylococcus_phage	6.8e-23	81.8
AWI44817.1\|1858860_1859379_-	dUTP pyrophosphatase	A0A1W6JQ84	Staphylococcus_phage	9.7e-66	74.7
AWI44818.1\|1859381_1859633_-	hypothetical protein	NA	NA	NA	NA
AWI44819.1\|1859633_1859837_-	hypothetical protein	A0A2H4JGA4	uncultured_Caudovirales_phage	5.2e-07	47.1
AWI44820.1\|1859826_1860195_-	hypothetical protein	A0A2H4JCS1	uncultured_Caudovirales_phage	5.6e-07	40.9
AWI44821.1\|1860303_1860726_-	hypothetical protein	A0A173GAT5	Staphylococcus_phage	1.5e-43	66.4
AWI44822.1\|1860722_1860920_-	hypothetical protein	A0A2H4JAZ1	uncultured_Caudovirales_phage	1.5e-22	80.0
AWI44823.1\|1860916_1861126_-	hypothetical protein	NA	NA	NA	NA
AWI44824.1\|1861139_1861517_-	hypothetical protein	A0A1W6JQ77	Staphylococcus_phage	2.0e-12	39.7
AWI44825.1\|1861519_1861726_-	hypothetical protein	A0A2H4JHN2	uncultured_Caudovirales_phage	7.6e-22	78.8
AWI45791.1\|1861722_1861902_-	hypothetical protein	Q8SDV8	Staphylococcus_phage	2.3e-06	45.8
AWI44826.1\|1861934_1862357_-	Holliday junction resolvase	A0A1D6Z252	Staphylococcus_phage	2.9e-44	70.0
AWI44827.1\|1862367_1862580_-	hypothetical protein	NA	NA	NA	NA
AWI44828.1\|1862747_1863521_-	DNA replication protein DnaC	A0A1W6JP70	Staphylococcus_phage	3.7e-109	83.6
AWI44829.1\|1863531_1864251_-	hypothetical protein	A0A2H4IYS0	uncultured_Caudovirales_phage	5.1e-89	84.5
AWI44830.1\|1864247_1864916_-	hypothetical protein	A0A1W6JPR0	Staphylococcus_phage	4.4e-103	79.6
AWI44831.1\|1864927_1865482_-	single-stranded DNA-binding protein	Q9G027	Staphylococcus_virus	1.1e-75	75.0
AWI44832.1\|1865559_1865802_+	hypothetical protein	A0ZS13	Staphylococcus_virus	7.1e-11	43.0
AWI44833.1\|1865841_1866072_-	hypothetical protein	NA	NA	NA	NA
AWI44834.1\|1866085_1866853_-	chromosomal replication initiator DnaA	Q8SDW5	Staphylococcus_phage	4.9e-122	86.2
AWI44835.1\|1866845_1867106_-	hypothetical protein	U3PCY6	Staphylococcus_phage	2.3e-39	95.3
AWI44836.1\|1867367_1867631_-	DNA-binding protein	B7T0G2	Staphylococcus_virus	3.5e-19	57.6
AWI44837.1\|1867720_1867960_+	hypothetical protein	NA	NA	NA	NA
AWI44838.1\|1868307_1869066_-	transcriptional regulator	A1BTY9	Staphylococcus_virus	3.3e-78	62.8
AWI44839.1\|1869083_1869308_-	transcriptional regulator	Q9MBT3	Staphylococcus_prophage	6.1e-25	74.0
AWI44840.1\|1869474_1870197_+	transcriptional regulator	G4KNM8	Staphylococcus_phage	1.2e-58	50.6

DBSCAN-SWA_6

2002561 : 2011037

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI45793.1\|2002561_2003074_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.7e-27	44.1
AWI44945.1\|2003130_2004159_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.3e-65	42.8
AWI44946.1\|2004151_2005639_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.5
AWI44947.1\|2005617_2007807_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.8e-137	38.9
AWI44948.1\|2007799_2008471_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWI44949.1\|2008470_2008731_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWI44950.1\|2008733_2009435_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	8.9e-46	41.2
AWI44951.1\|2009434_2010568_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AWI44952.1\|2010554_2011037_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.0e-20	42.7

DBSCAN-SWA_7

2159737 : 2199789

uncultured_Caudovirales_phage(52.27%)

portal,integrase,tail,terminase,capsid

attL 2160512:2160527|attR 2203535:2203550

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI45078.1\|2159737_2161471_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	4.8e-242	68.9
2160512:2160527	attL	NA	NA	NA	NA
AWI45079.1\|2161470_2161767_-	hypothetical protein	A0A0D4DCQ8	Staphylococcus_phage	6.2e-25	68.7
AWI45080.1\|2161819_2162128_-	hypothetical protein	NA	NA	NA	NA
AWI45081.1\|2162167_2162380_-	hypothetical protein	NA	NA	NA	NA
AWI45082.1\|2162535_2162922_-	hypothetical protein	NA	NA	NA	NA
AWI45083.1\|2162921_2164400_-	hypothetical protein	A8ATB2	Listeria_phage	5.0e-38	52.9
AWI45084.1\|2164399_2166373_-	hypothetical protein	U5PWM6	Bacillus_phage	1.9e-40	33.0
AWI45085.1\|2166369_2166600_-	hypothetical protein	NA	NA	NA	NA
AWI45086.1\|2168191_2169046_-\|tail	phage tail protein	A0A2H4J7E0	uncultured_Caudovirales_phage	2.4e-133	80.3
AWI45087.1\|2169047_2173670_-\|tail	phage tail tape measure protein	A0A2H4JDT7	uncultured_Caudovirales_phage	0.0e+00	65.0
AWI45088.1\|2173883_2174246_-	hypothetical protein	A0A2H4JCK3	uncultured_Caudovirales_phage	4.7e-59	95.8
AWI45089.1\|2174300_2174624_-	hypothetical protein	NA	NA	NA	NA
AWI45090.1\|2174685_2174871_-	hypothetical protein	A0A2H4JAG2	uncultured_Caudovirales_phage	2.7e-26	95.1
AWI45091.1\|2174889_2175519_-\|tail	phage tail protein	A0A2H4JC63	uncultured_Caudovirales_phage	3.6e-107	95.2
AWI45092.1\|2175531_2175936_-	hypothetical protein	A0A2H4JH09	uncultured_Caudovirales_phage	1.6e-68	94.8
AWI45093.1\|2175936_2176347_-	hypothetical protein	A0A2H4J7V9	uncultured_Caudovirales_phage	9.2e-43	64.7
AWI45094.1\|2176343_2176673_-	hypothetical protein	A0A1D6Z295	Staphylococcus_phage	2.7e-53	92.7
AWI45095.1\|2176662_2177004_-	DNA-packaging protein	A0A2H4J5J4	uncultured_Caudovirales_phage	3.1e-52	92.0
AWI45096.1\|2177022_2178366_-\|capsid	phage capsid protein	A0A2H4JGA1	uncultured_Caudovirales_phage	7.6e-171	89.3
AWI45097.1\|2178406_2178970_-	peptidase U35	A0A2H4JDQ0	uncultured_Caudovirales_phage	3.0e-105	100.0
AWI45098.1\|2178959_2180192_-\|portal	phage portal protein	H9A113	Staphylococcus_phage	4.1e-219	91.7
AWI45099.1\|2180194_2180380_-	hypothetical protein	A0A2H4JD76	uncultured_Caudovirales_phage	9.5e-16	69.8
AWI45100.1\|2180392_2182144_-\|terminase	terminase	A0A2H4J5G3	uncultured_Caudovirales_phage	0.0e+00	91.8
AWI45101.1\|2182136_2182622_-\|terminase	terminase	A0A0N9STN1	Staphylococcus_phage	6.1e-78	91.9
AWI45102.1\|2183743_2184190_-	transcriptional regulator	A0A0N7GFI1	Staphylococcus_phage	1.3e-71	87.2
AWI45103.1\|2184203_2184413_-	hypothetical protein	A0A2H4JCT1	uncultured_Caudovirales_phage	2.3e-13	61.3
AWI45104.1\|2184427_2184643_-	hypothetical protein	A0A2H4J460	uncultured_Caudovirales_phage	1.1e-23	72.9
AWI45105.1\|2184796_2185021_-	hypothetical protein	NA	NA	NA	NA
AWI45106.1\|2185193_2185655_-	hypothetical protein	NA	NA	NA	NA
AWI45107.1\|2185657_2185906_-	hypothetical protein	A0A2H4JGT2	uncultured_Caudovirales_phage	1.7e-12	57.3
AWI45108.1\|2185906_2186140_-	hypothetical protein	NA	NA	NA	NA
AWI45109.1\|2186189_2186696_-	dUTP pyrophosphatase	A0A2H4JB01	uncultured_Caudovirales_phage	5.8e-63	73.8
AWI45110.1\|2186688_2187021_-	hypothetical protein	NA	NA	NA	NA
AWI45111.1\|2187021_2187243_-	hypothetical protein	A0A2H4JHN5	uncultured_Caudovirales_phage	2.3e-08	48.1
AWI45112.1\|2187257_2187830_-	hypothetical protein	W5RVC2	Staphylococcus_phage	2.4e-81	75.4
AWI45113.1\|2187829_2188294_-	hypothetical protein	A0A2H4JCS1	uncultured_Caudovirales_phage	6.6e-05	56.9
AWI45114.1\|2188300_2188690_-	hypothetical protein	A0A286QNB5	Streptococcus_phage	5.7e-10	37.5
AWI45115.1\|2188782_2189229_-	hypothetical protein	U3PBR0	Staphylococcus_phage	1.7e-34	58.5
AWI45116.1\|2189222_2189423_-	hypothetical protein	A0A1W6JQ49	Staphylococcus_phage	6.0e-24	82.8
AWI45117.1\|2190001_2190355_-	hypothetical protein	A0A1W6JQ77	Staphylococcus_phage	1.3e-45	73.3
AWI45118.1\|2190356_2190545_-	hypothetical protein	A0A1W6JQ89	Staphylococcus_phage	8.5e-28	93.5
AWI45119.1\|2190537_2190948_-	Holliday junction resolvase	A0A1D6Z252	Staphylococcus_phage	7.5e-45	70.8
AWI45120.1\|2190958_2191171_-	hypothetical protein	NA	NA	NA	NA
AWI45121.1\|2191338_2192112_-	DNA replication protein DnaC	A0A1W6JP70	Staphylococcus_phage	4.8e-109	83.6
AWI45122.1\|2192122_2192890_-	DNA replication protein DnaD	A0A2H4JAS0	uncultured_Caudovirales_phage	7.2e-57	66.7
AWI45123.1\|2192876_2193557_-	hypothetical protein	U3PDZ6	Staphylococcus_phage	2.2e-118	93.2
AWI45124.1\|2193585_2194020_-	single-stranded DNA-binding protein	G4KNN8	Staphylococcus_phage	1.2e-53	72.1
AWI45125.1\|2194019_2194670_-	single-stranded DNA-binding protein	A0A2H4J5X9	uncultured_Caudovirales_phage	8.2e-86	75.1
AWI45802.1\|2194662_2194899_-	hypothetical protein	A0A2H4J1Y9	uncultured_Caudovirales_phage	7.9e-23	70.7
AWI45126.1\|2195167_2195377_-	hypothetical protein	A0A2H4J149	uncultured_Caudovirales_phage	9.5e-12	47.1
AWI45127.1\|2195438_2195621_+	hypothetical protein	NA	NA	NA	NA
AWI45128.1\|2195656_2195887_-	hypothetical protein	NA	NA	NA	NA
AWI45129.1\|2195898_2196663_-	Rha family transcriptional regulator	A0A141VTQ8	Staphylococcus_phage	5.6e-102	76.8
AWI45130.1\|2196675_2196915_-	hypothetical protein	NA	NA	NA	NA
AWI45131.1\|2197089_2197704_+	hypothetical protein	E5DV74	Deep-sea_thermophilic_phage	4.3e-36	42.5
AWI45132.1\|2197935_2198676_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	4.3e-06	59.0
AWI45133.1\|2198739_2199789_+\|integrase	integrase	A0A1J0MFM2	Staphylococcus_phage	2.3e-154	75.9
2203535:2203550	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2320065 : 2335637

uncultured_Caudovirales_phage(41.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI45243.1\|2320065_2320866_-	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.0e-14	30.3
AWI45244.1\|2320862_2321822_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	3.6e-05	52.0
AWI45245.1\|2321811_2322780_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.2e-136	79.5
AWI45246.1\|2323017_2323986_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.1e-174	93.5
AWI45247.1\|2324223_2326329_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	90.0
AWI45248.1\|2326291_2326690_-	ribonucleotide reductase assembly protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	2.8e-52	73.5
AWI45810.1\|2327405_2328281_+	hypothetical protein	NA	NA	NA	NA
AWI45249.1\|2328294_2328795_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	4.1e-53	72.3
AWI45250.1\|2329211_2330726_+	peptide transporter	A0A0P0IY73	Acinetobacter_phage	1.8e-72	37.4
AWI45251.1\|2331026_2332535_+	peptide ABC transporter permease	A0A0P0IY73	Acinetobacter_phage	6.1e-68	33.6
AWI45252.1\|2332660_2333614_+	lipid kinase	A0A1V0SBJ0	Catovirus	1.1e-11	25.5
AWI45253.1\|2333804_2334353_-	5'(3')-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	6.5e-28	37.2
AWI45254.1\|2334581_2335637_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	9.3e-23	26.6

DBSCAN-SWA_9

2349084 : 2356517

Pandoravirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI45264.1\|2349084_2350224_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	2.2e-25	34.3
AWI45265.1\|2350207_2350801_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.6e-34	43.0
AWI45266.1\|2351047_2351719_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.7e-65	57.2
AWI45267.1\|2351720_2352146_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.4e-07	25.2
AWI45268.1\|2352138_2352855_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	2.5e-51	45.4
AWI45269.1\|2353099_2353693_+	hypothetical protein	NA	NA	NA	NA
AWI45270.1\|2353754_2354009_+	hypothetical protein	NA	NA	NA	NA
AWI45271.1\|2354067_2355159_-	glycosyltransferase	A0A192Y8W7	Salmonella_phage	4.2e-58	41.2
AWI45272.1\|2355677_2356517_-	glyoxal reductase	A0A2H4PQR8	Staphylococcus_phage	1.1e-61	43.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage