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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP021887 Helicobacter apodemus strain SCJK1 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0
CP021886 Helicobacter apodemus strain SCJK1 chromosome, complete genome 0 crisprs cas14j,c2c9_V-U4,cas4,DEDDh,csa3,cas2,cas1,cas9 0 0 153 0

Results visualization

1. CP021886
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 7608 8 Acanthocystis_turfacea_Chlorella_virus(33.33%) tRNA NA
DBSCAN-SWA_2 37409 : 38594 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_3 49995 : 51945 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_4 55221 : 56496 1 Phage_TP(100.0%) protease NA
DBSCAN-SWA_5 86756 : 91530 5 Cyanophage(40.0%) NA NA
DBSCAN-SWA_6 95721 : 97242 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_7 103163 : 118276 10 Hokovirus(12.5%) tRNA NA
DBSCAN-SWA_8 125482 : 138261 13 Bacillus_phage(20.0%) tRNA NA
DBSCAN-SWA_9 148017 : 148536 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_10 159189 : 159813 1 Murmansk_poxvirus(100.0%) NA NA
DBSCAN-SWA_11 164729 : 168140 3 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_12 177637 : 179698 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_13 194143 : 200323 5 Erwinia_phage(33.33%) tRNA NA
DBSCAN-SWA_14 205283 : 205571 1 Burkholderia_phage(100.0%) NA NA
DBSCAN-SWA_15 209824 : 213260 4 Bacillus_phage(33.33%) NA NA
DBSCAN-SWA_16 217272 : 217941 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_17 226317 : 226854 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_18 229926 : 231948 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_19 250437 : 252288 1 Phaeocystis_globosa_virus(100.0%) NA NA
DBSCAN-SWA_20 259321 : 261064 1 Mimivirus(100.0%) NA NA
DBSCAN-SWA_21 267224 : 268901 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_22 272861 : 273965 1 Bathycoccus_sp._RCC1105_virus(100.0%) NA NA
DBSCAN-SWA_23 277853 : 281160 4 Campylobacter_phage(50.0%) NA NA
DBSCAN-SWA_24 302254 : 306486 4 Planktothrix_phage(50.0%) tRNA NA
DBSCAN-SWA_25 312222 : 314296 3 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_26 330284 : 331457 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_27 352431 : 356016 4 Planktothrix_phage(33.33%) integrase attL 348055:348070|attR 362559:362574
DBSCAN-SWA_28 367449 : 372859 2 Saccharomonospora_phage(50.0%) NA NA
DBSCAN-SWA_29 386598 : 387345 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_30 393827 : 411435 18 Moumouvirus(22.22%) tRNA NA
DBSCAN-SWA_31 415389 : 416085 1 Murid_herpesvirus(100.0%) NA NA
DBSCAN-SWA_32 444896 : 448513 4 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_33 459298 : 461056 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_34 483235 : 491401 9 Helicobacter_phage(60.0%) transposase NA
DBSCAN-SWA_35 499966 : 514092 10 Chrysochromulina_ericina_virus(28.57%) NA NA
DBSCAN-SWA_36 538765 : 540457 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_37 546012 : 547059 1 Mamastrovirus(100.0%) NA NA
DBSCAN-SWA_38 564141 : 569340 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_39 572802 : 574134 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_40 580811 : 582758 2 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_41 586181 : 587222 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_42 596244 : 603072 4 Erysipelothrix_phage(25.0%) NA NA
DBSCAN-SWA_43 614751 : 615291 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_44 629361 : 632498 4 unidentified_phage(33.33%) tRNA NA
DBSCAN-SWA_45 636957 : 647959 10 Aeromonas_phage(25.0%) tRNA NA
DBSCAN-SWA_46 651294 : 652758 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_47 657921 : 663117 3 Bacillus_phage(50.0%) tRNA NA
DBSCAN-SWA_48 668172 : 669661 2 Hokovirus(50.0%) NA NA
DBSCAN-SWA_49 674649 : 678853 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_50 682338 : 684182 2 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_51 688213 : 692798 4 Nitratiruptor_phage(33.33%) transposase NA
DBSCAN-SWA_52 695859 : 696917 2 Prochlorococcus_phage(50.0%) NA NA
DBSCAN-SWA_53 711542 : 712961 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_54 722387 : 723353 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_55 728296 : 729850 1 Agrobacterium_phage(100.0%) NA NA
DBSCAN-SWA_56 733248 : 746422 14 uncultured_Mediterranean_phage(40.0%) tRNA NA
DBSCAN-SWA_57 766458 : 767859 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_58 778207 : 779014 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_59 784197 : 789649 3 uncultured_Caudovirales_phage(66.67%) tRNA NA
DBSCAN-SWA_60 796620 : 803448 8 Bacteriophage(25.0%) NA NA
DBSCAN-SWA_61 815513 : 816242 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_62 822781 : 823525 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_63 841899 : 842679 1 Clostridium_phage(100.0%) NA NA
DBSCAN-SWA_64 851120 : 853450 2 Agrobacterium_phage(50.0%) tRNA NA
DBSCAN-SWA_65 856661 : 867358 12 uncultured_Mediterranean_phage(33.33%) protease NA
DBSCAN-SWA_66 874336 : 875788 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_67 887620 : 889744 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_68 892779 : 895635 5 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_69 904980 : 905601 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_70 909734 : 912099 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_71 916409 : 919484 1 Liberibacter_phage(100.0%) NA NA
DBSCAN-SWA_72 931988 : 934677 4 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_73 958216 : 958927 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_74 962559 : 963480 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_75 973820 : 975902 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_76 982630 : 984698 3 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_77 998834 : 999446 1 uncultured_archaeal_virus(100.0%) NA NA
DBSCAN-SWA_78 1006208 : 1012192 6 Freshwater_phage(33.33%) NA NA
DBSCAN-SWA_79 1018884 : 1019382 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_80 1023462 : 1025397 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_81 1045866 : 1047117 1 Bacillus_virus(100.0%) protease NA
DBSCAN-SWA_82 1053857 : 1054943 1 Mamastrovirus(100.0%) NA NA
DBSCAN-SWA_83 1058135 : 1062591 4 Indivirus(50.0%) NA NA
DBSCAN-SWA_84 1080636 : 1081359 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_85 1086485 : 1087163 1 Feldmannia_irregularis_virus(100.0%) NA NA
DBSCAN-SWA_86 1095956 : 1097903 1 Ralstonia_phage(100.0%) NA NA
DBSCAN-SWA_87 1108481 : 1114370 6 Tupanvirus(33.33%) NA NA
DBSCAN-SWA_88 1119140 : 1123101 3 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_89 1143152 : 1146119 2 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_90 1150642 : 1152556 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_91 1158329 : 1160480 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_92 1168430 : 1169834 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_93 1179704 : 1185634 5 Anguillid_herpesvirus(33.33%) NA NA
DBSCAN-SWA_94 1191732 : 1192395 1 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_95 1200798 : 1209352 8 uncultured_Mediterranean_phage(25.0%) protease NA
DBSCAN-SWA_96 1215914 : 1216781 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_97 1225215 : 1225971 1 Pelagibacter_phage(100.0%) NA NA
DBSCAN-SWA_98 1236936 : 1239112 3 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_99 1243196 : 1251140 7 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_100 1263343 : 1264276 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_101 1281707 : 1285058 2 Agrobacterium_phage(50.0%) NA NA
DBSCAN-SWA_102 1290950 : 1295565 7 Pneumococcus_phage(33.33%) NA NA
DBSCAN-SWA_103 1301456 : 1307369 6 Halovirus(33.33%) NA NA
DBSCAN-SWA_104 1321561 : 1322356 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_105 1328191 : 1329688 1 Mycobacterium_phage(100.0%) NA NA
DBSCAN-SWA_106 1356659 : 1357391 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_107 1364172 : 1366208 2 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_108 1384931 : 1391111 5 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_109 1394548 : 1397280 2 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_110 1435279 : 1448140 10 Moraxella_phage(16.67%) NA NA
DBSCAN-SWA_111 1453439 : 1457082 5 Tupanvirus(50.0%) NA NA
DBSCAN-SWA_112 1461376 : 1462285 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_113 1482447 : 1486189 6 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_114 1491974 : 1493075 1 Catovirus(100.0%) NA NA
DBSCAN-SWA_115 1498349 : 1499597 1 Megavirus(100.0%) NA NA
DBSCAN-SWA_116 1510260 : 1510722 1 Pneumococcus_phage(100.0%) NA NA
DBSCAN-SWA_117 1515689 : 1524176 6 Acinetobacter_phage(16.67%) NA NA
DBSCAN-SWA_118 1530561 : 1531362 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_119 1537505 : 1539419 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_120 1549710 : 1554897 3 Lake_Baikal_phage(33.33%) tRNA NA
DBSCAN-SWA_121 1560105 : 1560666 1 Pseudomonas_phage(100.0%) NA NA
DBSCAN-SWA_122 1573826 : 1575749 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_123 1585131 : 1586259 1 uncultured_Mediterranean_phage(100.0%) tRNA NA
DBSCAN-SWA_124 1593549 : 1594275 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_125 1616759 : 1617206 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_126 1623739 : 1624495 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_127 1629392 : 1631318 2 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_128 1637704 : 1638796 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_129 1643088 : 1644594 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_130 1651258 : 1652458 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_131 1655701 : 1671773 8 Tupanvirus(50.0%) tRNA NA
DBSCAN-SWA_132 1678496 : 1691117 9 Paramecium_bursaria_Chlorella_virus(20.0%) NA NA
DBSCAN-SWA_133 1707065 : 1713975 7 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_134 1725565 : 1734873 8 Clostridium_phage(25.0%) NA NA
DBSCAN-SWA_135 1738338 : 1739340 1 uncultured_virus(100.0%) NA NA
DBSCAN-SWA_136 1763942 : 1767352 3 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_137 1794053 : 1796240 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_138 1799902 : 1803219 4 Tetraselmis_virus(100.0%) NA NA
DBSCAN-SWA_139 1807094 : 1814376 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_140 1819684 : 1822179 3 Catovirus(50.0%) tRNA NA
DBSCAN-SWA_141 1825777 : 1840199 14 uncultured_virus(16.67%) protease NA
DBSCAN-SWA_142 1843428 : 1854812 5 Vibrio_phage(50.0%) NA NA
DBSCAN-SWA_143 1863131 : 1866271 4 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_144 1872659 : 1875609 4 Cafeteria_roenbergensis_virus(33.33%) NA NA
DBSCAN-SWA_145 1884325 : 1890146 5 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_146 1894245 : 1910291 12 Anomala_cuprea_entomopoxvirus(16.67%) NA NA
DBSCAN-SWA_147 1916991 : 1917756 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_148 1952875 : 1954759 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_149 1959935 : 1960187 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_150 1985581 : 1988789 2 Only_Syngen_Nebraska_virus(50.0%) NA NA
DBSCAN-SWA_151 1997901 : 1999002 1 Faustovirus(100.0%) NA NA
DBSCAN-SWA_152 2002364 : 2004630 2 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_153 2026621 : 2031675 3 Paramecium_bursaria_Chlorella_virus(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage