CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029211	Aquabacterium olei strain NBRC 110486 plasmid pTB101, complete sequence	0 crisprs	csa3	0	0	1	0
CP029210	Aquabacterium olei strain NBRC 110486 chromosome, complete genome	0 crisprs	DEDDh,Cas9_archaeal,DinG,csa3,WYL,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29475 : 86168

uncultured_Caudovirales_phage(21.43%)

integrase,transposase

attL 29436:29495|attR 83651:84969

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
29436:29495	attL	NA	NA	NA	NA
AWI55397.1\|29475_30701_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.4e-118	73.7
AWI55398.1\|30925_31918_+\|integrase	integrase/recombinase	A0A1P8DJJ6	Virus_Rctr41k	8.4e-66	43.3
AWI55399.1\|32447_33812_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	2.3e-66	41.1
AWI55668.1\|33992_34562_+	TetR family transcriptional regulator	NA	NA	NA	NA
AWI55400.1\|34558_34876_+	hypothetical protein	NA	NA	NA	NA
AWI55401.1\|34945_35551_-	DUF305 domain-containing protein	NA	NA	NA	NA
AWI55402.1\|35649_36261_-	hypothetical protein	NA	NA	NA	NA
AWI55403.1\|36408_36858_-	hypothetical protein	NA	NA	NA	NA
AWI55404.1\|36982_37804_+	DUF3348 domain-containing protein	NA	NA	NA	NA
AWI55405.1\|37800_39960_+	hypothetical protein	NA	NA	NA	NA
AWI55406.1\|39959_40610_+	hypothetical protein	NA	NA	NA	NA
AWI55407.1\|40602_41193_+	DUF2894 domain-containing protein	NA	NA	NA	NA
AWI55408.1\|41211_41790_-	hypothetical protein	NA	NA	NA	NA
AWI55409.1\|41794_42799_-	hypothetical protein	NA	NA	NA	NA
AWI55410.1\|42798_45012_-	twin-arginine translocation pathway signal protein	NA	NA	NA	NA
AWI55411.1\|45023_45482_-	isoquinoline 1-oxidoreductase	A0A0P0IVM8	Acinetobacter_phage	1.4e-10	31.4
AWI55412.1\|45651_46635_+	AraC family transcriptional regulator	NA	NA	NA	NA
AWI55413.1\|46627_47971_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
AWI55414.1\|48353_48563_+	hypothetical protein	NA	NA	NA	NA
AWI55415.1\|50177_51194_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	8.2e-08	28.0
AWI55416.1\|51319_51910_+	hypothetical protein	NA	NA	NA	NA
AWI55417.1\|55347_56364_-\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	8.2e-08	28.0
AWI55418.1\|56484_56739_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
AWI55419.1\|56735_56987_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
AWI55420.1\|57222_57546_+	hypothetical protein	NA	NA	NA	NA
AWI55421.1\|57605_58013_+	glyoxalase	NA	NA	NA	NA
AWI55422.1\|58031_58796_-	short-chain dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	5.5e-17	31.1
AWI55423.1\|59008_62482_-	hypothetical protein	A0A1V0SGX0	Hokovirus	6.8e-54	31.7
AWI55424.1\|62544_63699_-	two-component system response regulator	W8CYM9	Bacillus_phage	3.8e-09	38.3
AWI55425.1\|63817_64246_-	glyoxalase	NA	NA	NA	NA
AWI55669.1\|64303_64726_+	DUF1810 domain-containing protein	A0A2H4UVK5	Bodo_saltans_virus	3.4e-16	42.9
AWI55426.1\|65105_65390_+	hypothetical protein	NA	NA	NA	NA
AWI55427.1\|65400_66030_+	lysine transporter LysE	NA	NA	NA	NA
AWI55428.1\|66034_67810_-	arsenical pump-driving ATPase	NA	NA	NA	NA
AWI55429.1\|67809_68541_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	4.0e-97	74.7
AWI55430.1\|68533_68959_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.4e-46	65.5
AWI55431.1\|68999_70196_+	cellulase	NA	NA	NA	NA
AWI55432.1\|70199_70925_-	hypothetical protein	NA	NA	NA	NA
AWI55433.1\|70921_73162_-	hypothetical protein	NA	NA	NA	NA
AWI55434.1\|73165_75466_-	cellulose synthase catalytic subunit (UDP-forming)	NA	NA	NA	NA
AWI55435.1\|75596_77807_+	catalase/peroxidase HPI	NA	NA	NA	NA
AWI55436.1\|77949_78708_+	hypothetical protein	NA	NA	NA	NA
AWI55437.1\|78717_79806_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWI55438.1\|79940_82268_+	CbbBc protein	NA	NA	NA	NA
AWI55439.1\|82279_83086_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
AWI55440.1\|83213_83408_+	DUF2191 domain-containing protein	NA	NA	NA	NA
AWI55441.1\|83690_84916_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.4e-118	73.7
AWI55442.1\|85151_86168_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	8.2e-08	28.0
83651:84969	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029210

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1517720 : 1524036

Enterobacteria_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI53170.1\|1517720_1518401_-	hypothetical protein	K7P6T5	Enterobacteria_phage	2.9e-09	31.7
AWI55136.1\|1518452_1518818_-	hypothetical protein	A0A248XD87	Klebsiella_phage	4.1e-34	59.7
AWI53171.1\|1518901_1519261_-	hypothetical protein	NA	NA	NA	NA
AWI53172.1\|1519471_1520146_-	hypothetical protein	A0A088C400	Shewanella_sp._phage	6.2e-12	28.6
AWI53173.1\|1520213_1520435_-	hypothetical protein	NA	NA	NA	NA
AWI53174.1\|1520431_1521094_-	ATP-binding protein	G9L667	Escherichia_phage	3.4e-63	56.3
AWI53175.1\|1521276_1521459_-	hypothetical protein	NA	NA	NA	NA
AWI53176.1\|1521458_1521842_-	hypothetical protein	NA	NA	NA	NA
AWI53177.1\|1521995_1522454_-	hypothetical protein	NA	NA	NA	NA
AWI53178.1\|1522671_1523055_-	DUF1064 domain-containing protein	Q3HQZ9	Burkholderia_phage	2.2e-38	67.6
AWI53179.1\|1523051_1523360_-	hypothetical protein	A0A1I9KFA7	Aeromonas_phage	1.4e-16	47.3
AWI53180.1\|1523356_1523557_-	hypothetical protein	NA	NA	NA	NA
AWI53181.1\|1523553_1524036_-	hypothetical protein	I6NMK4	Burkholderia_virus	2.3e-24	39.0

DBSCAN-SWA_2

3185966 : 3197274

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWI54459.1\|3185966_3187784_-	hypothetical protein	B5WZU0	Pseudomonas_phage	3.5e-78	38.8
AWI54460.1\|3188183_3188771_-	putative colanic acid biosynthesis acetyltransferase	NA	NA	NA	NA
AWI55292.1\|3188763_3189972_-	transferase	NA	NA	NA	NA
AWI55293.1\|3190406_3191492_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-85	47.5
AWI54461.1\|3191503_3192421_+	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	5.6e-24	35.8
AWI54462.1\|3192426_3193314_+	glucose-1-phosphate thymidylyltransferase	K7QKA7	Escherichia_phage	4.4e-98	59.9
AWI54463.1\|3193320_3193890_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	5.4e-41	46.5
AWI54464.1\|3193933_3194920_-	hypothetical protein	K7Z8A5	Megavirus	2.2e-05	34.7
AWI54465.1\|3195126_3196140_-	protein CapI	A0A1V0SKV4	Klosneuvirus	4.2e-28	30.7
AWI54466.1\|3196170_3197274_-	mannose-1-phosphate guanyltransferase	A0A127AW70	Bacillus_phage	8.3e-14	30.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029211

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029210

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection