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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP028120 Escherichia coli O43 str. RM10042 plasmid pRM10042-1, complete sequence 0 crisprs NA 0 0 0 0
CP028123 Escherichia coli O43 str. RM10042 plasmid pRM10042-3, complete sequence 0 crisprs NA 0 0 0 0
CP028121 Escherichia coli O43 str. RM10042 plasmid pRM10042-2, complete sequence 0 crisprs NA 0 0 7 0
CP028122 Escherichia coli O43 str. RM10042 chromosome, complete genome 5 crisprs DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK 0 14 11 0

Results visualization

1. CP028121
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 16397 13 Stx2-converting_phage(37.5%) transposase,protease NA
DBSCAN-SWA_2 21945 : 28732 7 Moraxella_phage(25.0%) NA NA
DBSCAN-SWA_3 36251 : 38846 3 Stx2-converting_phage(100.0%) transposase NA
DBSCAN-SWA_4 59772 : 63307 4 Stx2-converting_phage(75.0%) transposase NA
DBSCAN-SWA_5 72676 : 80481 13 Cronobacter_phage(25.0%) integrase attL 66290:66303|attR 82359:82372
DBSCAN-SWA_6 85593 : 86571 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_7 106671 : 109061 3 Stx2-converting_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP028122
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028122_1 561090-561186 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028122_2 3129408-3130290 TypeI-E I-E
14 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028122_3 3156015-3156409 Unclear I-E
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028122_4 4157106-4157256 Unclear NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP028122_5 4943436-4943575 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP028122_3 3.2|3156105|32|CP028122|CRISPRCasFinder,CRT 3156105-3156136 32 MT330372 Cronobacter phage JC01, complete genome 47177-47208 1 0.969
CP028122_3 3.8|3156106|32|CP028122|PILER-CR 3156106-3156137 32 MT330372 Cronobacter phage JC01, complete genome 47177-47208 1 0.969
CP028122_2 2.1|3129437|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129437-3129468 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
CP028122_2 2.5|3129681|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129681-3129712 32 NZ_CP013381 Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence 29600-29631 6 0.812
CP028122_2 2.5|3129681|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129681-3129712 32 NZ_CP009547 Burkholderia sp. 2002721687 plasmid pBTU, complete sequence 88258-88289 6 0.812
CP028122_2 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130047-3130078 32 NC_048766 Pantoea phage vB_PagM_AAM37, complete genome 4684-4715 6 0.812
CP028122_2 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129498-3129529 32 AP014324 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, *** SEQUENCING IN PROGRESS *** 30389-30420 7 0.781
CP028122_2 2.5|3129681|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129681-3129712 32 NZ_CP043960 Streptomyces tendae strain 139 plasmid unnamed1, complete sequence 201710-201741 7 0.781
CP028122_2 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130047-3130078 32 MK095606 Pantoea phage vB_PagS_AAS23, complete genome 1556-1587 7 0.781
CP028122_2 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130047-3130078 32 MG732930 Enterobacter phage Ec_L1, complete genome 26019-26050 7 0.781
CP028122_2 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129498-3129529 32 NZ_CP014218 Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence 43450-43481 8 0.75
CP028122_2 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129498-3129529 32 NZ_CP014173 Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence 7656-7687 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 CP023013 Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence 1077804-1077835 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP023017 Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence 1081182-1081213 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP015851 Ralstonia solanacearum strain YC40-M plasmid, complete sequence 1264658-1264689 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP022783 Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence 1083481-1083512 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP022795 Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence 1080184-1080215 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 CP023015 Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence 909207-909238 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP052077 Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence 1059848-1059879 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP052079 Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP052125 Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP052123 Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP052081 Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP052083 Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence 1059871-1059902 8 0.75
CP028122_2 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130047-3130078 32 JN022534 Xanthomonas phage vB_XveM_DIBBI, complete genome 4380-4411 8 0.75
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 863544-863575 8 0.75
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022762 Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence 1275990-1276021 8 0.75
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP023017 Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence 1339310-1339341 8 0.75
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP014703 Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence 1275012-1275043 8 0.75
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022771 Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence 1275982-1276013 8 0.75
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022777 Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence 1275336-1275367 8 0.75
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022799 Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence 1275973-1276004 8 0.75
CP028122_2 2.14|3130230|32|CP028122|CRISPRCasFinder,CRT 3130230-3130261 32 KU160664 Arthrobacter phage Salgado, complete genome 51730-51761 8 0.75
CP028122_2 2.14|3130230|32|CP028122|CRISPRCasFinder,CRT 3130230-3130261 32 MF140418 Arthrobacter phage LiSara, complete genome 52060-52091 8 0.75
CP028122_3 3.4|3156227|32|CP028122|CRISPRCasFinder,CRT 3156227-3156258 32 NZ_CP010769 Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence 121002-121033 8 0.75
CP028122_3 3.10|3156228|32|CP028122|PILER-CR 3156228-3156259 32 NZ_CP010769 Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence 121002-121033 8 0.75
CP028122_2 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129498-3129529 32 MN856013 Myoviridae sp. isolate 131, complete genome 19253-19284 9 0.719
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP019604 Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence 45733-45764 9 0.719
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP025432 Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence 92571-92602 9 0.719
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 AY526908 Bordetella phage BMP-1, complete genome 4333-4364 9 0.719
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NC_005357 Bordetella phage BPP-1, complete genome 4333-4364 9 0.719
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 AY526909 Bordetella phage BIP-1, complete genome 4333-4364 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022775 Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence 1354177-1354208 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP026091 Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence 997239-997270 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NC_014309 Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome 1494540-1494571 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP021653 Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence 1451783-1451814 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NC_014310 Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence 1410266-1410297 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP006989 Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence 164878-164909 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP026093 Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence 997339-997370 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP021767 Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence 1451750-1451781 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP012940 Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence 1191260-1191291 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP012944 Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence 651651-651682 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP012688 Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence 1451790-1451821 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022760 Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence 1317649-1317680 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022789 Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence 1317640-1317671 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NC_017575 Ralstonia solanacearum Po82 megaplasmid, complete sequence 997051-997082 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP026308 Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence 996997-997028 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP051295 Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence 1179712-1179743 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022764 Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence 1354318-1354349 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022797 Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence 1354299-1354330 9 0.719
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP022758 Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence 1354285-1354316 9 0.719
CP028122_3 3.6|3156349|32|CP028122|CRISPRCasFinder,CRT 3156349-3156380 32 AP021850 Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome 302507-302538 9 0.719
CP028122_3 3.12|3156350|32|CP028122|PILER-CR 3156350-3156381 32 AP021850 Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome 302507-302538 9 0.719
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 272-323 9 0.827
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31252-31303 9 0.827
CP028122_2 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3129620-3129651 32 NZ_CP025433 Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence 97047-97078 10 0.688
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 26938-26969 10 0.688
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 20330-20361 10 0.688
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 24766-24797 10 0.688
CP028122_2 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT 3130108-3130139 32 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 24015-24046 10 0.688
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12113-12164 10 0.808
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87119-87170 10 0.808
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 152-203 11 0.788
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3373-3424 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 44-95 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3372-3423 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 43-94 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3372-3423 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 43-94 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3372-3423 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 43-94 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 15000-15051 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 18332-18383 12 0.769
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4115-4166 13 0.75
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4114-4165 13 0.75
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4114-4165 13 0.75
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4114-4165 13 0.75
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_AP023209 Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence 70-121 13 0.75
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208982-209033 14 0.731
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219476-219527 14 0.731
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210310-210361 14 0.731
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191265-191316 14 0.731
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30159-30210 14 0.731
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7393-7444 15 0.712
CP028122_5 5.1|4943480|52|CP028122|CRISPRCasFinder 4943480-4943531 52 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84217-84268 15 0.712

1. spacer 3.2|3156105|32|CP028122|CRISPRCasFinder,CRT matches to MT330372 (Cronobacter phage JC01, complete genome) position: , mismatch: 1, identity: 0.969

tccgtccaccctgatagccgcccttgtgatcc	CRISPR spacer
tccgtcctccctgatagccgcccttgtgatcc	Protospacer
******* ************************

2. spacer 3.8|3156106|32|CP028122|PILER-CR matches to MT330372 (Cronobacter phage JC01, complete genome) position: , mismatch: 1, identity: 0.969

tccgtccaccctgatagccgcccttgtgatcc	CRISPR spacer
tccgtcctccctgatagccgcccttgtgatcc	Protospacer
******* ************************

3. spacer 2.1|3129437|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

aaaaccaaacttctccataaattccatagccg	CRISPR spacer
attactaaacttctgcataaattccataggag	Protospacer
*  **.******** **************  *

4. spacer 2.5|3129681|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 6, identity: 0.812

ctgccgac--tgaccgccgacgctttcgcgttaa	CRISPR spacer
--gccggcggtgaccgccggcgctttcgggttag	Protospacer
  ****.*  *********.******** ****.

5. spacer 2.5|3129681|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 6, identity: 0.812

ctgccgac--tgaccgccgacgctttcgcgttaa	CRISPR spacer
--gccggcggtgaccgccggcgctttcgggttag	Protospacer
  ****.*  *********.******** ****.

6. spacer 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_048766 (Pantoea phage vB_PagM_AAM37, complete genome) position: , mismatch: 6, identity: 0.812

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgcgcggtatccgccgtgatgaatcggtattc	Protospacer
 * *.* .* ******** **************

7. spacer 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to AP014324 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S33-C64, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

aactggat-tctgctctaattattacatcatcg	CRISPR spacer
-tttgtatatctgctctaatagttacatcatca	Protospacer
  .** ** *********** .**********.

8. spacer 2.5|3129681|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ctgccgactgaccgccgacgctttcgcgttaa	CRISPR spacer
cggccgcctgaccgccgacgctgtcgcaggac	Protospacer
* **** *************** ****.  * 

9. spacer 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to MK095606 (Pantoea phage vB_PagS_AAS23, complete genome) position: , mismatch: 7, identity: 0.781

atccac-atttccgccgttatgaatcggtattc	CRISPR spacer
-tgggcggtatccgccgttatgaatcggtaatc	Protospacer
 *  .* .* ******************** **

10. spacer 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to MG732930 (Enterobacter phage Ec_L1, complete genome) position: , mismatch: 7, identity: 0.781

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgttatgaatcggtactc	Protospacer
  * * ..*  ********************.**

11. spacer 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014218 (Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence) position: , mismatch: 8, identity: 0.75

aactgga---ttctgctctaattattacatcatcg	CRISPR spacer
---cagatccttctgctttaattgttacatcatct	Protospacer
   ..**   *******.*****.********** 

12. spacer 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 8, identity: 0.75

aactgga---ttctgctctaattattacatcatcg	CRISPR spacer
---cagatccttctgctttaattgttacatcatct	Protospacer
   ..**   *******.*****.********** 

13. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

14. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

15. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

16. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

17. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

18. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

19. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

20. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

21. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

22. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

23. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

24. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
accagcagcgtgcaggctggcgcccgatcctc	Protospacer
 * . ****** *********.****** .**

25. spacer 2.11|3130047|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to JN022534 (Xanthomonas phage vB_XveM_DIBBI, complete genome) position: , mismatch: 8, identity: 0.75

--atccacatttccgccgttatgaatcggtattc	CRISPR spacer
tgagcggta--tccgccgtgatgaatcggtactc	Protospacer
  * * ..*  ******** ***********.**

26. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
caccgcccagattgctgcgctgacgtcgtctc	Protospacer
* *   **** *********** ******* .

27. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .*** 

28. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .*** 

29. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .*** 

30. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .*** 

31. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .*** 

32. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatcgg	Protospacer
*** **** ************** .  .*** 

33. spacer 2.14|3130230|32|CP028122|CRISPRCasFinder,CRT matches to KU160664 (Arthrobacter phage Salgado, complete genome) position: , mismatch: 8, identity: 0.75

gctgaggctgtcaggagccagtgcggcagagg	CRISPR spacer
gatgacgctgtcaggagccagttcgggatcat	Protospacer
* *** **************** *** *  . 

34. spacer 2.14|3130230|32|CP028122|CRISPRCasFinder,CRT matches to MF140418 (Arthrobacter phage LiSara, complete genome) position: , mismatch: 8, identity: 0.75

gctgaggctgtcaggagccagtgcggcagagg	CRISPR spacer
gatgacgctgtcaggagccagttcgggatcat	Protospacer
* *** **************** *** *  . 

35. spacer 3.4|3156227|32|CP028122|CRISPRCasFinder,CRT matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

36. spacer 3.10|3156228|32|CP028122|PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 8, identity: 0.75

gcgggcgttaacgcggtgatactgtttgacgg	CRISPR spacer
ttgatcgttaacgcgatgctactgtttgtggg	Protospacer
 .*. **********.** *********  **

37. spacer 2.2|3129498|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to MN856013 (Myoviridae sp. isolate 131, complete genome) position: , mismatch: 9, identity: 0.719

aactggattctgctctaattattacatcatcg	CRISPR spacer
tgccgatttctgctgtaatttttacatcattt	Protospacer
 .*.*. ******* ***** *********. 

38. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
gcgcgacacgtccaggctgccacccgatgttg	Protospacer
 **    .*********** ********.** 

39. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtttg	Protospacer
 .*******.** ************ .  ** 

40. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to AY526908 (Bordetella phage BMP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.     

41. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_005357 (Bordetella phage BPP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.     

42. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to AY526909 (Bordetella phage BIP-1, complete genome) position: , mismatch: 9, identity: 0.719

tcggccagcgtccaggctggcacccgatattc----	CRISPR spacer
acggccagcatcaaggctggcacc----atcgtgga	Protospacer
 ********.** ***********    **.     

43. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**  

44. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

45. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

46. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

47. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**  

48. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
agcgagccagtttgctccgctgccgatctccc	Protospacer
  ** *********** ******** . ** .

49. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

50. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

51. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

52. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

53. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

54. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccttgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**  

55. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccttgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**  

56. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

57. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

58. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgccaatccg	Protospacer
*** **** **************  . .**  

59. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**  

60. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**  

61. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cccctgcctgtttgctgcgctgcgaaaatccg	Protospacer
*** **** ************** .  .**  

62. spacer 3.6|3156349|32|CP028122|CRISPRCasFinder,CRT matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggtgaatactgcggcaggcgctgcgggaattg	CRISPR spacer
gcgccatgctgcgtcaggcgctgcgggacctc	Protospacer
*    **.***** ************** .* 

63. spacer 3.12|3156350|32|CP028122|PILER-CR matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggtgaatactgcggcaggcgctgcgggaattg	CRISPR spacer
gcgccatgctgcgtcaggcgctgcgggacctc	Protospacer
*    **.***** ************** .* 

64. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 9, identity: 0.827

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa-ccgttacc	Protospacer
 ** *****************.*******************.*. .** *.* 

65. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.827

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc--	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacag--ccgttgcca	Protospacer
 ** *****************.*******************..  .** ***  

66. spacer 2.4|3129620|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025433 (Paracoccus zhejiangensis strain J6 plasmid pPZ03, complete sequence) position: , mismatch: 10, identity: 0.688

tcggccagcgtccaggctggcacccgatattc	CRISPR spacer
atggccagcatcgaggctggcaccccggtctg	Protospacer
 .*******.** ************ .  .* 

67. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcag	Protospacer
* .... ***********.* *********. 

68. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcag	Protospacer
* .... ***********.* *********. 

69. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcag	Protospacer
* .... ***********.* *********. 

70. spacer 2.12|3130108|32|CP028122|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 10, identity: 0.688

cccgtgccagtttgctgcgctgccgtcgtcgt	CRISPR spacer
cgtacagcagtttgctgcacagccgtcgtcaa	Protospacer
* .... ***********.* *********. 

71. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
tcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtcgcccgt	Protospacer
 *. ***************** ***********************.   .*.

72. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.808

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
acgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaatcaatcg	Protospacer
.*. *************************************.*. **..*  

73. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
ttgaagcctgatgcgacgctgacgcgtcttatcaggcctacnagacccgagc	Protospacer
 ..  **************** ******************* ** .* * **

74. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  . 

75. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.* 

76. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  . 

77. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.* 

78. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  . 

79. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.* 

80. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  . 

81. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.* 

82. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
caggtgcctgatgcgacgctggcgcgtcttatcatgcctacgagcccgcgaa	Protospacer
  . ***************** ************ *********..**  . 

83. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc-	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatct-gtacg	Protospacer
 .. ***************** ************ ******.*.*.. **.* 

84. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

85. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

86. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

87. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcc	Protospacer
  . ***************** ************ ******.*..*.*   *

88. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 13, identity: 0.75

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
ccgatgcctgatgcgacgctgacgcgtcttatcatgcctacggacctgaacc	Protospacer
 *. ***************** ************ *******.....*.  *

89. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

90. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

91. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

92. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctacccactgttttt	Protospacer
  . ***************** *******************  ..*   * .

93. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
ctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaatctgcaccc	Protospacer
 .. ***************** ************ ******.* .*  .. *

94. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 15, identity: 0.712

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcact	Protospacer
  . ***************** ************ ******.*. ..*   .

95. spacer 5.1|4943480|52|CP028122|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 15, identity: 0.712

gcattgcctgatgcgacgctgccgcgtcttatcaggcctacgagttcggtgc	CRISPR spacer
cggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcact	Protospacer
  . ***************** ************ ******.*. ..*   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 198427 : 260601 54 Emiliania_huxleyi_virus(12.5%) plate,protease,transposase,tRNA NA
DBSCAN-SWA_2 564334 : 627476 74 Enterobacteria_phage(42.31%) tail,holin,protease,portal,transposase,capsid,terminase,lysis,integrase,head,tRNA attL 574496:574542|attR 618950:618996
DBSCAN-SWA_3 1107985 : 1172659 79 Escherichia_phage(68.83%) tail,holin,bacteriocin,portal,capsid,terminase,lysis NA
DBSCAN-SWA_4 1399694 : 1468345 82 Escherichia_phage(31.48%) tail,holin,protease,portal,capsid,terminase,lysis,integrase,head attL 1399531:1399555|attR 1454540:1454564
DBSCAN-SWA_5 1756739 : 1815489 75 Enterobacteria_phage(39.22%) tail,portal,transposase,capsid,terminase,lysis,head NA
DBSCAN-SWA_6 1826953 : 1839651 19 uncultured_Caudovirales_phage(100.0%) tail,protease,portal,capsid,terminase,head NA
DBSCAN-SWA_7 2231757 : 2279042 64 Escherichia_phage(24.24%) tail,plate,holin,transposase,portal,capsid,terminase,integrase,head attL 2235113:2235172|attR 2279112:2279188
DBSCAN-SWA_8 2322578 : 2331730 8 Acanthocystis_turfacea_Chlorella_virus(28.57%) NA NA
DBSCAN-SWA_9 2391689 : 2492031 106 Enterobacteria_phage(40.91%) tail,holin,protease,portal,capsid,terminase,lysis,head,tRNA NA
DBSCAN-SWA_10 3028047 : 3035811 6 Escherichia_phage(66.67%) integrase,transposase attL 3025835:3025848|attR 3032948:3032961
DBSCAN-SWA_11 3105911 : 3113051 6 Escherichia_phage(83.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage