CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP022368	Azospirillum sp. TSH58 plasmid TSH58_p07, complete sequence	0 crisprs	NA	3
CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	0 crisprs	csa3	0
CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	0 crisprs	csa3,cas3	2
CP022364	Azospirillum sp. TSH58 chromosome, complete genome	0 crisprs	DEDDh,WYL,cas3,csa3	2
CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	0 crisprs	csa3	0
CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	0 crisprs	NA	0
CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6553

Burkholderia_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ87743.1\|1347_1746_+	hypothetical protein	NA	NA	NA	NA
AWJ87781.1\|2013_3705_+	hypothetical protein	E5G6M2	Salmonella_phage	6.7e-23	25.5
AWJ87744.1\|3911_4487_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	2.1e-29	47.1
AWJ87745.1\|4440_5370_-	DUF4928 domain-containing protein	NA	NA	NA	NA
AWJ87746.1\|5374_6553_-	DNA (cytosine-5-)-methyltransferase	I6NLI4	Burkholderia_phage	1.4e-128	58.5

DBSCAN-SWA_2

10548 : 12444

Thermoanaerobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ87750.1\|10548_12444_-	DNA helicase	I3VYY6	Thermoanaerobacterium_phage	3.2e-21	24.4

DBSCAN-SWA_3

34614 : 41206

Burkholderia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ87772.1\|34614_35367_-	hypothetical protein	A0A0A8IL09	Aurantimonas_phage	1.5e-19	32.9
AWJ87773.1\|35762_36398_+	hypothetical protein	NA	NA	NA	NA
AWJ87782.1\|36666_38358_+	hypothetical protein	E5G6M2	Salmonella_phage	6.7e-23	25.5
AWJ87774.1\|38564_39140_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	2.1e-29	47.1
AWJ87775.1\|39093_40023_-	DUF4928 domain-containing protein	NA	NA	NA	NA
AWJ87776.1\|40027_41206_-	DNA (cytosine-5-)-methyltransferase	I6NLI4	Burkholderia_phage	1.4e-128	58.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP022364

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

739769 : 809618

Pseudomonas_phage(14.29%)

tail,portal,terminase,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ83294.1\|739769_740537_+\|tail	phage tail protein	NA	NA	NA	NA
AWJ83295.1\|740585_741353_+\|tail	phage tail protein	NA	NA	NA	NA
AWJ83296.1\|741623_742397_+	hypothetical protein	E3T4R8	Cafeteria_roenbergensis_virus	9.3e-12	35.2
AWJ83297.1\|742448_743768_-	alcohol dehydrogenase	NA	NA	NA	NA
AWJ83298.1\|743855_746522_-	hypothetical protein	NA	NA	NA	NA
AWJ83299.1\|746566_747337_-	hypothetical protein	NA	NA	NA	NA
AWJ83300.1\|747371_747734_-	hypothetical protein	NA	NA	NA	NA
AWJ83301.1\|747965_749291_+	murein transglycosylase	NA	NA	NA	NA
AWJ83302.1\|749300_749690_+	hypothetical protein	NA	NA	NA	NA
AWJ83303.1\|749709_750129_-	hypothetical protein	NA	NA	NA	NA
AWJ83304.1\|750221_750665_+	carbon monoxide dehydrogenase	NA	NA	NA	NA
AWJ83305.1\|750784_751450_+	hydrogenase	NA	NA	NA	NA
AWJ83306.1\|751758_752121_-	hypothetical protein	NA	NA	NA	NA
AWJ83307.1\|752129_752534_-	response regulator	NA	NA	NA	NA
AWJ83308.1\|752769_753162_-	hypothetical protein	NA	NA	NA	NA
AWJ85257.1\|753872_755132_+	hypothetical protein	NA	NA	NA	NA
AWJ83309.1\|755184_756627_+	alcohol dehydrogenase	NA	NA	NA	NA
AWJ83310.1\|756690_757188_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
AWJ83311.1\|757187_759419_+	aldehyde dehydrogenase	NA	NA	NA	NA
AWJ83312.1\|759924_768135_+	hemagglutinin/hemolysin-related protein	NA	NA	NA	NA
AWJ83313.1\|768442_769189_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AWJ83314.1\|769198_770119_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWJ83315.1\|770226_770958_+	oxidoreductase	A0A2P0VP75	Tetraselmis_virus	3.2e-06	25.8
AWJ83316.1\|770983_771493_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AWJ83317.1\|771489_771855_+	hypothetical protein	NA	NA	NA	NA
AWJ83318.1\|771909_772665_+	hypothetical protein	NA	NA	NA	NA
AWJ83319.1\|772747_774493_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	3.1e-23	29.9
AWJ83320.1\|774507_775845_+	type I secretion membrane fusion protein	NA	NA	NA	NA
AWJ85258.1\|777207_778755_+	hypothetical protein	NA	NA	NA	NA
AWJ83321.1\|779099_779498_-	hypothetical protein	A0A2I7RPE9	Vibrio_phage	6.0e-15	46.5
AWJ83322.1\|780189_780495_-	hypothetical protein	NA	NA	NA	NA
AWJ83323.1\|780576_781266_-	hypothetical protein	NA	NA	NA	NA
AWJ83324.1\|781255_783853_-	hypothetical protein	NA	NA	NA	NA
AWJ83325.1\|783849_784734_-	hypothetical protein	NA	NA	NA	NA
AWJ83326.1\|784736_786317_-	hypothetical protein	NA	NA	NA	NA
AWJ83327.1\|786316_793393_-	hypothetical protein	A0A2H4GY14	Pseudomonas_phage	5.7e-39	35.8
AWJ83328.1\|793517_793949_+	hypothetical protein	NA	NA	NA	NA
AWJ83329.1\|793960_794215_-	hypothetical protein	NA	NA	NA	NA
AWJ83330.1\|794229_794685_-	hypothetical protein	NA	NA	NA	NA
AWJ83331.1\|794721_795210_-	hypothetical protein	NA	NA	NA	NA
AWJ83332.1\|795253_795661_-	hypothetical protein	NA	NA	NA	NA
AWJ83333.1\|795657_796110_-	hypothetical protein	NA	NA	NA	NA
AWJ83334.1\|796106_796445_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AWJ83335.1\|796448_797030_-	hypothetical protein	A0A2H4J8C5	uncultured_Caudovirales_phage	2.8e-05	67.6
AWJ83336.1\|797076_797526_-	hypothetical protein	NA	NA	NA	NA
AWJ83337.1\|797532_798885_-\|capsid	phage major capsid protein	NA	NA	NA	NA
AWJ83338.1\|798971_799913_-	peptidase S49	A0A0F6TJW1	Escherichia_coli_O157_typing_phage	1.2e-32	34.6
AWJ83339.1\|799926_801213_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.3e-63	37.2
AWJ85259.1\|801209_802847_-\|terminase	terminase	E4ZFM0	Streptococcus_phage	1.5e-96	39.0
AWJ83340.1\|802884_803454_-\|terminase	terminase	A0A1X9I6K0	Streptococcus_phage	4.0e-12	34.3
AWJ83341.1\|803547_803943_-	HNH endonuclease	A0A2D1GNP5	Pseudomonas_phage	2.9e-17	41.4
AWJ83342.1\|804045_804624_-	hypothetical protein	NA	NA	NA	NA
AWJ83343.1\|804941_806543_-	hypothetical protein	A0A1B2AQ05	Phage_Wrath	4.4e-64	31.1
AWJ83344.1\|806720_806921_-	hypothetical protein	NA	NA	NA	NA
AWJ83345.1\|806917_807586_-	S-adenosylmethionine-binding protein	M4SPS7	Rhodobacter_phage	2.8e-49	48.5
AWJ83346.1\|807633_807903_-	hypothetical protein	NA	NA	NA	NA
AWJ83347.1\|807920_809618_-	hypothetical protein	B4UTY9	Rhizobium_phage	1.6e-24	30.6

DBSCAN-SWA_2

2951643 : 2961824

Sinorhizobium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ85137.1\|2951643_2953857_-	DNA methyltransferase	Q8W6H6	Sinorhizobium_phage	3.8e-143	61.5
AWJ85138.1\|2953859_2954342_-	hypothetical protein	NA	NA	NA	NA
AWJ85139.1\|2954350_2954728_-	hypothetical protein	A0A240F4V5	Ochrobactrum_phage	1.0e-08	41.4
AWJ85140.1\|2954727_2955066_-	hypothetical protein	NA	NA	NA	NA
AWJ85141.1\|2955065_2956778_-	hypothetical protein	NA	NA	NA	NA
AWJ85142.1\|2956792_2957875_-	recombinase RecT	Q858E1	Salmonella_phage	6.6e-40	34.8
AWJ85143.1\|2957880_2958732_-	hypothetical protein	M5AWB6	Nitratiruptor_phage	2.9e-14	30.1
AWJ85144.1\|2958733_2959405_-	DNA polymerase III subunit epsilon	A0A2H4J7C9	uncultured_Caudovirales_phage	2.7e-36	43.6
AWJ85145.1\|2959401_2960100_-	hypothetical protein	NA	NA	NA	NA
AWJ85146.1\|2960096_2960312_-	hypothetical protein	NA	NA	NA	NA
AWJ85147.1\|2960308_2960593_-	hypothetical protein	NA	NA	NA	NA
AWJ85148.1\|2960589_2960811_-	hypothetical protein	NA	NA	NA	NA
AWJ85149.1\|2960807_2961824_-	hypothetical protein	Q8W6R4	Burkholderia_virus	1.1e-73	46.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP022365

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

73066 : 80727

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ85473.1\|73066_74059_+	chromosome partitioning protein	Q8JL10	Natrialba_phage	2.9e-18	34.9
AWJ85474.1\|74048_74933_+	chromosome partitioning protein (modular protein)	I3NLC2	Bifidobacterium_phage	1.9e-13	34.7
AWJ85475.1\|75074_76478_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	4.0e-53	33.0
AWJ85476.1\|76510_77836_-	UDP-glucose 6-dehydrogenase	A0A127AXI2	Bacillus_phage	2.0e-83	41.3
AWJ85477.1\|78092_78389_-	hypothetical protein	NA	NA	NA	NA
AWJ85478.1\|78475_79735_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2D2W2B8	Stenotrophomonas_phage	1.1e-14	27.4
AWJ85479.1\|79734_80727_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A2P1ELS8	Moumouvirus	1.9e-38	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP022367

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

214673 : 265650

uncultured_Mediterranean_phage(23.81%)

terminase,tRNA,protease,portal,transposase,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ86286.1\|214673_215939_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.4e-105	47.9
AWJ86287.1\|216124_217288_+	hypothetical protein	NA	NA	NA	NA
AWJ87612.1\|217313_218117_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.9e-55	46.7
AWJ86288.1\|218139_218721_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
AWJ86289.1\|218769_219048_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA
AWJ86290.1\|219147_220458_-	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.0e-18	40.3
AWJ86291.1\|220566_221220_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.9e-44	48.9
AWJ86292.1\|221216_222032_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.7e-36	34.2
AWJ86293.1\|222036_222723_-\|protease	site-2 protease family protein	NA	NA	NA	NA
AWJ86294.1\|222793_223888_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.1e-15	36.9
AWJ86295.1\|223859_224813_-	SPOR domain-containing protein	NA	NA	NA	NA
AWJ86296.1\|224809_226570_-\|tRNA	arginine--tRNA ligase	J2YBL2	Acanthamoeba_polyphaga_lentillevirus	1.3e-08	20.8
AWJ86297.1\|226616_227819_-	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
AWJ86298.1\|228037_228406_+	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	1.2e-22	49.0
AWJ86299.1\|228452_229238_+	exodeoxyribonuclease III	NA	NA	NA	NA
AWJ86300.1\|229311_229884_+	hypothetical protein	NA	NA	NA	NA
AWJ86301.1\|230904_231300_+	hypothetical protein	NA	NA	NA	NA
AWJ86302.1\|231407_231767_+	hypothetical protein	NA	NA	NA	NA
AWJ86303.1\|232036_232336_-	hypothetical protein	NA	NA	NA	NA
AWJ86304.1\|232548_233094_-	hypothetical protein	NA	NA	NA	NA
AWJ86305.1\|233310_233568_-	hypothetical protein	NA	NA	NA	NA
AWJ86306.1\|233738_234218_+	hypothetical protein	NA	NA	NA	NA
AWJ86307.1\|234219_234720_+	hypothetical protein	NA	NA	NA	NA
AWJ87613.1\|235514_236021_-	hypothetical protein	NA	NA	NA	NA
AWJ86308.1\|236037_236571_-	hypothetical protein	NA	NA	NA	NA
AWJ86309.1\|238292_238631_-	hypothetical protein	NA	NA	NA	NA
AWJ87614.1\|238846_239089_+	hypothetical protein	NA	NA	NA	NA
AWJ86310.1\|239115_239421_-	hypothetical protein	NA	NA	NA	NA
AWJ86311.1\|240061_240819_-\|transposase	IS5/IS1182 family transposase	A0A0N9SJT9	Paenibacillus_phage	6.5e-10	32.0
AWJ86312.1\|241339_242341_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	1.8e-20	32.5
AWJ86313.1\|242696_242906_-	hypothetical protein	NA	NA	NA	NA
AWJ86314.1\|243603_243876_+	hypothetical protein	NA	NA	NA	NA
AWJ87615.1\|243880_244345_-	muraminidase	B0VK53	Azospirillum_phage	6.7e-50	72.7
AWJ86315.1\|244589_244913_-	hypothetical protein	NA	NA	NA	NA
AWJ86316.1\|245003_245456_-	hypothetical protein	NA	NA	NA	NA
AWJ86317.1\|246062_248717_-	hypothetical protein	B0VK49	Azospirillum_phage	4.4e-162	44.6
AWJ87616.1\|248745_250440_-	hypothetical protein	B0VK48	Azospirillum_phage	3.6e-266	80.3
AWJ86318.1\|250439_254339_-	hypothetical protein	B0VK47	Azospirillum_phage	9.9e-94	39.9
AWJ86319.1\|254341_255007_-	hypothetical protein	NA	NA	NA	NA
AWJ86320.1\|255003_255189_-	hypothetical protein	NA	NA	NA	NA
AWJ86321.1\|255206_255995_-	hypothetical protein	NA	NA	NA	NA
AWJ86322.1\|256113_257265_-	hypothetical protein	D6PGA8	uncultured_phage	1.7e-22	24.7
AWJ86323.1\|257268_257547_-	hypothetical protein	NA	NA	NA	NA
AWJ86324.1\|257572_258034_-	hypothetical protein	NA	NA	NA	NA
AWJ86325.1\|258033_258339_-	hypothetical protein	NA	NA	NA	NA
AWJ86326.1\|258404_258602_-	hypothetical protein	NA	NA	NA	NA
AWJ86327.1\|258614_259637_-\|capsid	capsid protein	V5Q8G6	Xylella_phage	6.4e-69	42.7
AWJ86328.1\|259695_260058_-\|head	head decoration protein	A0A291AUM0	Sinorhizobium_phage	1.0e-21	50.4
AWJ86329.1\|260089_260587_-	hypothetical protein	NA	NA	NA	NA
AWJ86330.1\|260598_261444_-	serine peptidase	A0A248XD65	Klebsiella_phage	2.8e-38	42.6
AWJ87617.1\|261440_262958_-\|portal	phage portal protein	V5Q9I2	Xylella_phage	1.6e-84	37.5
AWJ86331.1\|262999_263215_-	hypothetical protein	NA	NA	NA	NA
AWJ86332.1\|263222_265178_-\|terminase	terminase	G8EXZ6	Synechococcus_phage	2.0e-95	38.4
AWJ86333.1\|265152_265650_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	1.8e-08	44.6

DBSCAN-SWA_2

1476400 : 1485216

Emiliania_huxleyi_virus(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWJ87232.1\|1476400_1478920_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	3.2e-05	35.3
AWJ87233.1\|1478924_1479350_-	dihydroneopterin aldolase	NA	NA	NA	NA
AWJ87234.1\|1479441_1480527_-	modification methylase	A0A1W6JJW1	Lactococcus_phage	3.9e-32	34.6
AWJ87235.1\|1480617_1481292_-	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	8.9e-19	35.6
AWJ87236.1\|1481288_1482077_-	cAMP-binding protein	NA	NA	NA	NA
AWJ87237.1\|1482242_1482740_+	hypothetical protein	G9E3U3	Emiliania_huxleyi_virus	5.4e-05	62.2
AWJ87238.1\|1482983_1483553_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-11	48.4
AWJ87239.1\|1483767_1485216_-\|protease	carboxyl-terminal protease	A0A0R6PIZ1	Moraxella_phage	8.9e-24	26.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP022368

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP022364

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP022365

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. CP022367

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection