CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029481	Microvirga sp. 17 mud 1-3 chromosome, complete genome	0 crisprs	csa3,WYL,cas3,DEDDh	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2444391 : 2507336

Pseudomonas_phage(42.55%)

plate,terminase,portal,tRNA,capsid,tail,integrase

attL 2453007:2453024|attR 2512342:2512359

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWM87320.1\|2444391_2445105_+\|tRNA	Ala-tRNA(Pro) hydrolase	NA	NA	NA	NA
AWM87321.1\|2445135_2445990_+	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
AWM87322.1\|2446139_2446925_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-31	40.8
AWM87323.1\|2446929_2448249_-	amino acid ABC transporter permease	NA	NA	NA	NA
AWM87324.1\|2448258_2449461_-	amino acid ABC transporter permease	NA	NA	NA	NA
AWM87325.1\|2449593_2450616_-	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	5.1e-74	42.1
AWM87326.1\|2450840_2452037_+	cystathionine beta-lyase	NA	NA	NA	NA
AWM87327.1\|2452070_2452451_-	hypothetical protein	NA	NA	NA	NA
AWM87328.1\|2452450_2453182_-	dolichol-phosphate mannosyltransferase	V9QJB1	Oenococcus_phage	1.5e-08	22.0
2453007:2453024	attL	NA	NA	NA	NA
AWM87329.1\|2453224_2454934_-	glycosyl transferase	NA	NA	NA	NA
AWM87330.1\|2455106_2456894_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA
AWM87331.1\|2456921_2458280_+	cation transporter	NA	NA	NA	NA
AWM87332.1\|2458422_2459415_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
AWM87333.1\|2459458_2459947_+\|tRNA	cys-tRNA(pro)/cys-tRNA(cys) deacylase	NA	NA	NA	NA
AWM87334.1\|2460161_2460590_+	hypothetical protein	NA	NA	NA	NA
AWM87335.1\|2460727_2460958_+	hypothetical protein	NA	NA	NA	NA
AWM87336.1\|2461338_2462574_+	hypothetical protein	V5YSU2	Pseudomonas_phage	1.1e-102	52.7
AWM87337.1\|2462698_2463121_-	single-stranded DNA-binding protein	M5ABV5	Bacillus_phage	2.0e-08	34.5
AWM87338.1\|2463175_2463394_-	hypothetical protein	NA	NA	NA	NA
AWM87339.1\|2463386_2463752_-	hypothetical protein	A0A1W6JT30	Escherichia_phage	1.4e-21	63.0
AWM87340.1\|2463754_2463982_-	hypothetical protein	V5YSU5	Pseudomonas_phage	2.5e-18	64.4
AWM87341.1\|2463997_2464990_-	hypothetical protein	V5YUP8	Pseudomonas_phage	7.0e-105	59.2
AWM87342.1\|2465005_2466211_-	hypothetical protein	V5YTC9	Pseudomonas_phage	2.2e-105	51.2
AWM87343.1\|2466315_2466717_-	hypothetical protein	V5YTJ2	Pseudomonas_phage	2.7e-15	46.4
AWM87344.1\|2466782_2468213_+	hypothetical protein	A0A193GYQ8	Enterobacter_phage	6.3e-155	57.7
AWM87345.1\|2468602_2469136_+	hypothetical protein	NA	NA	NA	NA
AWM87346.1\|2469123_2469360_+	hypothetical protein	NA	NA	NA	NA
AWM87347.1\|2469528_2469855_+	hypothetical protein	Q546W6	Burkholderia_phage	2.2e-23	56.8
AWM87348.1\|2469851_2470850_+	hypothetical protein	V5YTD4	Pseudomonas_phage	8.2e-69	50.9
AWM87349.1\|2470846_2471140_+	hypothetical protein	NA	NA	NA	NA
AWM87350.1\|2471136_2471532_+	VRR-NUC domain-containing protein	V5YTP9	Pseudomonas_phage	2.0e-31	58.0
AWM89117.1\|2471567_2472017_+	dUTP diphosphatase	A0A2H4GY78	Pseudomonas_phage	1.3e-45	61.2
AWM87351.1\|2472018_2472489_+	hypothetical protein	V5YSV3	Pseudomonas_phage	2.6e-09	47.3
AWM87352.1\|2472485_2472824_+	hypothetical protein	V5YTD7	Pseudomonas_phage	4.8e-13	45.9
AWM89118.1\|2472934_2474386_+	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	3.4e-116	49.9
AWM87353.1\|2474388_2474568_+	hypothetical protein	NA	NA	NA	NA
AWM87354.1\|2474564_2474822_+	hypothetical protein	NA	NA	NA	NA
AWM87355.1\|2474802_2477082_+\|integrase	integrase	A0A088FVF8	Escherichia_phage	3.5e-160	47.9
AWM87356.1\|2477179_2477392_+	hypothetical protein	A0A193GYF6	Enterobacter_phage	6.0e-14	53.0
AWM87357.1\|2477429_2477618_+	hypothetical protein	NA	NA	NA	NA
AWM87358.1\|2477837_2478407_+	hypothetical protein	S4TSU4	Salmonella_phage	7.1e-09	26.5
AWM87359.1\|2478406_2478676_+	hypothetical protein	NA	NA	NA	NA
AWM87360.1\|2478740_2479877_+	hypothetical protein	I6NVL3	Burkholderia_virus	3.2e-13	81.2
AWM87361.1\|2479873_2480077_+	hypothetical protein	NA	NA	NA	NA
AWM87362.1\|2480632_2480935_+	hypothetical protein	V5YTF6	Pseudomonas_phage	1.9e-21	51.0
AWM89119.1\|2480991_2481348_+	hypothetical protein	A0A0P0IYC0	Acinetobacter_phage	1.1e-20	42.6
AWM87363.1\|2481347_2481851_+	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	7.3e-42	56.2
AWM89120.1\|2481733_2482402_+	hypothetical protein	NA	NA	NA	NA
AWM87364.1\|2482540_2483047_+	DNA-packaging protein	A0A193GYK5	Enterobacter_phage	1.2e-47	62.0
AWM87365.1\|2483039_2485103_+\|terminase	terminase	V5YTA4	Pseudomonas_phage	2.6e-271	70.3
AWM87366.1\|2485106_2485661_+	hypothetical protein	V5YTG8	Pseudomonas_phage	7.5e-48	55.8
AWM87367.1\|2485657_2487253_+\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	3.0e-166	56.7
AWM87368.1\|2487249_2489223_+\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	4.6e-233	62.4
AWM87369.1\|2489307_2489601_+	hypothetical protein	A0A088FQV7	Escherichia_phage	3.7e-14	53.8
AWM87370.1\|2489600_2489942_+	hypothetical protein	A0A088FQK9	Escherichia_phage	2.9e-26	53.2
AWM89121.1\|2489950_2490487_+	hypothetical protein	Q75QM4	Wolbachia_phage	3.9e-09	29.0
AWM87371.1\|2490462_2491065_+	hypothetical protein	A0A193GYB4	Enterobacter_phage	5.3e-55	58.5
AWM87372.1\|2491061_2491697_+\|plate	phage baseplate assembly protein V	D5LGZ5	Escherichia_phage	1.2e-44	49.1
AWM89122.1\|2491748_2492087_+\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	1.9e-41	73.0
AWM87373.1\|2492086_2492992_+\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	1.1e-117	72.4
AWM87374.1\|2492936_2493605_+\|tail	phage tail protein I	V5YTN0	Pseudomonas_phage	2.2e-57	52.5
AWM87375.1\|2495302_2495626_+	hypothetical protein	A0A088FQL9	Escherichia_phage	6.0e-13	40.3
AWM87376.1\|2495760_2497194_+\|tail	phage tail protein	V5YTI0	Pseudomonas_phage	4.5e-177	69.4
AWM87377.1\|2497206_2497713_+\|tail	phage major tail tube protein	V5YTN5	Pseudomonas_phage	1.2e-63	70.8
AWM87378.1\|2497767_2498052_+\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	8.3e-19	51.6
AWM87379.1\|2498192_2500469_+\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	4.9e-194	51.3
AWM87380.1\|2500465_2500882_+\|tail	phage tail protein	V5YTC2	Pseudomonas_phage	6.9e-38	59.1
AWM87381.1\|2500865_2501078_+\|tail	phage tail protein	A0A193GYC8	Enterobacter_phage	1.3e-19	63.8
AWM89123.1\|2501074_2502112_+\|tail	phage tail protein	A0A088FRU7	Escherichia_phage	4.7e-112	60.9
AWM87382.1\|2502462_2504856_+	transketolase	NA	NA	NA	NA
AWM87383.1\|2505003_2506188_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.8e-105	53.4
AWM87384.1\|2506253_2507336_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
2512342:2512359	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2574967 : 2584744

uncultured_Mediterranean_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWM87440.1\|2574967_2576251_-	peptidase M23	Q8SBN9	Clostridium_phage	3.9e-15	39.1
AWM87441.1\|2576367_2577078_-	protein-L-isoaspartate O-methyltransferase	A0A1J0MC37	Streptomyces_phage	1.4e-06	37.3
AWM87442.1\|2577094_2577856_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
AWM87443.1\|2577857_2579222_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-94	43.9
AWM87444.1\|2579322_2580123_-	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.5e-52	46.2
AWM87445.1\|2580119_2580662_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA
AWM87446.1\|2580739_2580982_-	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	3.7e-07	54.9
AWM89131.1\|2581037_2582138_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	7.7e-12	37.1
AWM87447.1\|2582155_2582884_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.9e-39	48.5
AWM87448.1\|2582885_2583686_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.6e-27	39.4
AWM87449.1\|2583724_2584744_-	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	8.7e-26	41.7

DBSCAN-SWA_3

2936810 : 2986492

Acinetobacter_phage(25.0%)

protease,head,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWM87723.1\|2936810_2937521_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
AWM87724.1\|2937504_2938356_-	hypothetical protein	NA	NA	NA	NA
AWM87725.1\|2938636_2939413_-	hypothetical protein	NA	NA	NA	NA
AWM87726.1\|2940207_2940516_-	hypothetical protein	NA	NA	NA	NA
AWM87727.1\|2940737_2941742_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
AWM87728.1\|2942362_2942845_-\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
AWM87729.1\|2942871_2943468_-	urease accessory protein UreE	NA	NA	NA	NA
AWM87730.1\|2943526_2944012_-	nucleoside deaminase	A0A0B5J096	Pandoravirus	3.6e-22	38.8
AWM87731.1\|2944179_2945178_-	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	7.2e-41	37.7
AWM87732.1\|2945188_2947633_-	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	5.6e-228	54.1
AWM87733.1\|2947637_2949119_-	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	1.8e-96	43.2
AWM87734.1\|2949238_2949679_-	lactoylglutathione lyase	NA	NA	NA	NA
AWM87735.1\|2949871_2952523_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.5e-16	24.6
AWM87736.1\|2952717_2955045_+	PAS domain-containing sensor histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	2.9e-24	34.1
AWM87737.1\|2955176_2956742_-	hypothetical protein	NA	NA	NA	NA
AWM87738.1\|2956981_2958061_-	hypothetical protein	NA	NA	NA	NA
AWM87739.1\|2959276_2962228_-	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA	NA	NA	NA
AWM89160.1\|2962317_2963745_-	two-component sensor histidine kinase	NA	NA	NA	NA
AWM87740.1\|2963762_2964461_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.9e-28	33.0
AWM87741.1\|2964623_2965832_-\|protease	HtrA protease/chaperone protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.3e-22	29.8
AWM87742.1\|2965948_2966398_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
AWM87743.1\|2966401_2968384_-	heme lyase NrfEFG subunit NrfE	NA	NA	NA	NA
AWM87744.1\|2968396_2968876_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
AWM87745.1\|2968872_2969973_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
AWM89161.1\|2970044_2971379_-	ATP-binding protein	NA	NA	NA	NA
AWM87746.1\|2971438_2972113_-	DNA-binding response regulator	NA	NA	NA	NA
AWM87747.1\|2972128_2972443_-	hypothetical protein	NA	NA	NA	NA
AWM87748.1\|2972515_2972725_-	hypothetical protein	NA	NA	NA	NA
AWM87749.1\|2972721_2973282_-	hypothetical protein	A0A1X9HX89	Ruegeria_phage	6.4e-39	52.2
AWM87750.1\|2973283_2974813_-	hypothetical protein	A0A0K1LM54	Rhodobacter_phage	8.2e-36	37.7
AWM87751.1\|2974923_2976060_-	hypothetical protein	NA	NA	NA	NA
AWM87752.1\|2976169_2980036_-	hypothetical protein	A0A0B5A7K5	Paracoccus_phage	7.4e-243	40.2
AWM87753.1\|2980050_2980476_-	peptidase P60	A0A1V0DYB6	Dinoroseobacter_phage	4.3e-35	52.6
AWM87754.1\|2980661_2981552_-	beta tubulin	A0A1V0DY93	Dinoroseobacter_phage	2.6e-66	42.6
AWM87755.1\|2981801_2982440_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	5.2e-53	52.4
AWM87756.1\|2982529_2982772_+	GTP-binding protein	NA	NA	NA	NA
AWM87757.1\|2982778_2983435_-\|tail	phage tail protein	C0LP53	Escherichia_virus	1.3e-06	32.1
AWM87758.1\|2983475_2983706_+	hypothetical protein	NA	NA	NA	NA
AWM87759.1\|2983755_2983956_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
AWM87760.1\|2983952_2984300_-	gene transfer agent family protein	NA	NA	NA	NA
AWM87761.1\|2984352_2984763_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
AWM87762.1\|2984812_2985247_-	DUF3168 domain-containing protein	NA	NA	NA	NA
AWM87763.1\|2985219_2985555_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AWM87764.1\|2985811_2986492_-	hypothetical protein	A0A0F7L420	uncultured_marine_virus	2.5e-13	33.5

DBSCAN-SWA_4

4029529 : 4074982

Enterobacteria_phage(28.57%)

terminase,portal,head,protease,capsid,tail,integrase

attL 4061202:4061249|attR 4077333:4077380

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWM88591.1\|4029529_4029988_-\|protease	serine protease	NA	NA	NA	NA
AWM88592.1\|4030140_4031412_+	aminoacetone oxidase family FAD-binding enzyme	NA	NA	NA	NA
AWM88593.1\|4031408_4033211_+	DNA helicase RecQ	F2NZ48	Diadromus_pulchellus_ascovirus	2.2e-72	39.6
AWM88594.1\|4033433_4034573_-	myo-inositol 2-dehydrogenase	NA	NA	NA	NA
AWM88595.1\|4034574_4035360_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.0e-10	24.9
AWM88596.1\|4035361_4036513_-	ATPase	NA	NA	NA	NA
AWM88597.1\|4036586_4037528_-	LacI family transcriptional regulator	NA	NA	NA	NA
AWM88598.1\|4037815_4038664_+	RpiR family transcriptional regulator	NA	NA	NA	NA
AWM88599.1\|4038743_4039733_-	inositol 2-dehydrogenase	NA	NA	NA	NA
AWM88600.1\|4039872_4041789_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
AWM88601.1\|4041882_4043730_+	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
AWM88602.1\|4043754_4044639_+	myo-inosose-2 dehydratase	NA	NA	NA	NA
AWM88603.1\|4045704_4045914_+	hypothetical protein	NA	NA	NA	NA
AWM88604.1\|4046006_4046969_+	hypothetical protein	NA	NA	NA	NA
AWM89241.1\|4046992_4047292_-	hypothetical protein	NA	NA	NA	NA
AWM88605.1\|4047361_4048165_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AWM88606.1\|4048299_4049160_+	tryptophan 2,3-dioxygenase	NA	NA	NA	NA
AWM88607.1\|4049176_4050331_+	aminotransferase	NA	NA	NA	NA
AWM88608.1\|4050342_4051242_-	sugar ABC transporter permease	NA	NA	NA	NA
AWM88609.1\|4051241_4052186_-	ABC transporter permease	NA	NA	NA	NA
AWM88610.1\|4052247_4053558_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AWM88611.1\|4053630_4054683_-	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-24	30.9
AWM88612.1\|4055090_4056074_+	NAD-dependent epimerase	NA	NA	NA	NA
AWM88613.1\|4056097_4056844_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AWM88614.1\|4056863_4057622_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AWM88615.1\|4057838_4058345_+	DUF4188 domain-containing protein	NA	NA	NA	NA
AWM88616.1\|4058283_4058799_+	hypothetical protein	NA	NA	NA	NA
AWM88617.1\|4058818_4059580_+	hypothetical protein	NA	NA	NA	NA
AWM88618.1\|4059935_4060274_-	hypothetical protein	NA	NA	NA	NA
AWM88619.1\|4060517_4060997_-	polyketide cyclase	NA	NA	NA	NA
4061202:4061249	attL	NA	NA	NA	NA
AWM88620.1\|4061421_4062702_+\|integrase	integrase	NA	NA	NA	NA
AWM88621.1\|4062952_4063480_+	hypothetical protein	NA	NA	NA	NA
AWM88622.1\|4063638_4063929_+	HNH endonuclease	NA	NA	NA	NA
AWM88623.1\|4063941_4064193_+	hypothetical protein	NA	NA	NA	NA
AWM88624.1\|4064378_4064639_-	hypothetical protein	NA	NA	NA	NA
AWM89242.1\|4064669_4064894_-	transcriptional regulator	NA	NA	NA	NA
AWM88625.1\|4065072_4065459_+	hypothetical protein	NA	NA	NA	NA
AWM88626.1\|4065602_4066067_+	hypothetical protein	NA	NA	NA	NA
AWM89243.1\|4066123_4066360_+	hypothetical protein	NA	NA	NA	NA
AWM88627.1\|4066362_4066590_+	hypothetical protein	NA	NA	NA	NA
AWM88628.1\|4066939_4067446_+	hypothetical protein	NA	NA	NA	NA
AWM88629.1\|4067414_4068794_+	hypothetical protein	NA	NA	NA	NA
AWM88630.1\|4069876_4070425_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	4.4e-32	40.8
AWM88631.1\|4070424_4072083_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.1e-38	32.0
AWM88632.1\|4072113_4072485_+	hypothetical protein	NA	NA	NA	NA
AWM88633.1\|4072641_4073229_+	hypothetical protein	A0A0H4AEL5	Pseudoalteromonas_phage	2.2e-05	28.1
AWM88634.1\|4073231_4073549_+\|head,tail	head-tail adaptor protein	A0A1J0GUY4	Halomonas_phage	2.5e-08	42.0
AWM88635.1\|4074571_4074982_+\|terminase	phage terminase small subunit P27 family	NA	NA	NA	NA
4077333:4077380	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage