CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029542	Streptomyces sp. NEAU-S7GS2 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
CP029541	Streptomyces sp. NEAU-S7GS2 chromosome, complete genome	13 crisprs	DEDDh,cas7,csa3,casR,WYL,cas4,cas3,Cas14u_CAS-V,DinG,c2c9_V-U4	2	9	2	0

1. CP029541

CRISPR-Cas detection and classification

Crispr_ID: CP029541_1

• CRISPR_ID: CP029541_1
• CRISPR_location: 378262-378412
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of CP029541_1

Consensus_repeat	Method
CGTGCTCTCCGCGCAAGCGGAGGTGGGCC	CRISPRCasFinder

spacers of CP029541_1

>1.1|378291|32|CP029541|CRISPRCasFinder
GACCTTCGCGACGCTGGCTGAGCGCCACGGCC
>1.2|378352|32|CP029541|CRISPRCasFinder
GTTCACTCCGTGGTGGGTTGCGGTAATGGCGG

CRISPR arrays and Neighbor proteins around CP029541_1

CRISPR arrays

The CRISPR arrays of CP029541_1

>merge|CP029541|1|378262-378412|CRISPRCasFinder
GGCGTTCTCTGCGAGGGCGGAGGTGATCCGACCTTCGCGACGCTGGCTGAGCGCCACGGCCCGTGCTCTCCGCGCAAGCGGAGGTGGGCCGTTCACTCCGTGGTGGGTTGCGGTAATGGCGGCGTGCTCTCCGCGCGAGCGGAGGTGGGCC

>CP029541|1|1|378262-378412|CRISPRCasFinder
GGCGTTCTCTGCGAGGGCGGAGGTGATCC	GACCTTCGCGACGCTGGCTGAGCGCCACGGCC
CGTGCTCTCCGCGCAAGCGGAGGTGGGCC	GTTCACTCCGTGGTGGGTTGCGGTAATGGCGG
CGTGCTCTCCGCGCGAGCGGAGGTGGGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN25028.1|371891_372365_-|cupin	unknown	unknown	gnl|CDD|380340
CP029541.1|AWN25038.1|381776_383666_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
CP029541.1|AWN25036.1|381094_381349_+|lasso-peptide-biosynthesis-PqqD-family-chaperone	unknown	unknown	gnl|CDD|377508
CP029541.1|AWN31821.1|373758_374463_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN25042.1|388336_389218_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
CP029541.1|AWN25027.1|369758_370604_-|calcium-binding-protein	unknown	unknown	gnl|CDD|380205
CP029541.1|AWN25025.1|365185_365656_+|DNA-mismatch-repair-protein-MutT	unknown	unknown	gnl|CDD|240032
CP029541.1|AWN25032.1|377167_377545_+|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609
CP029541.1|AWN25030.1|373360_373762_+|IS5-family-transposase	unknown	unknown	gnl|CDD|379129
CP029541.1|AWN25039.1|383947_385582_+|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl|CDD|235731
CP029541.1|AWN25037.1|381345_381780_+|lasso-peptide-biosynthesis-B2-protein	unknown	unknown	gnl|CDD|379206
CP029541.1|AWN25026.1|369270_369648_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN25034.1|379025_379136_+|lasso-RiPP-family-leader-peptide-containing-protein	unknown	unknown	unknown
CP029541.1|AWN25035.1|379163_381020_+|lasso-peptide-isopeptide-bond-forming-cyclase	unknown	unknown	gnl|CDD|238949
CP029541.1|AWN25031.1|374467_375655_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
CP029541.1|AWN25029.1|372614_373112_-|DUF1772-domain-containing-protein	unknown	unknown	gnl|CDD|378020
CP029541.1|AWN25040.1|386367_386562_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN25041.1|386984_387263_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN25043.1|389276_390065_-|glyoxalase	unknown	unknown	gnl|CDD|319947
CP029541.1|AWN25033.1|377541_378126_+|hypothetical-protein	unknown	unknown	gnl|CDD|368835

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN25028.1|371891_372365_-|cupin	gnl|CDD|380340	cd02210, cupin_BLR2406-like, Bradyrhizobium japonicum BLR2406 and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to BLR2406, a Bradyrhizobium japonicum protein of unknown function with a cupin beta barrel domain. Proteins in this subfamily appear to align closest to RmlC carbohydrate epimerase which is involved in dTDP-L-rhamnose production, and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	9.44263e-38
CP029541.1|AWN25038.1|381776_383666_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.03233e-142
CP029541.1|AWN25036.1|381094_381349_+|lasso-peptide-biosynthesis-PqqD-family-chaperone	gnl|CDD|377508	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD). This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.	1.60837e-14
CP029541.1|AWN25027.1|369758_370604_-|calcium-binding-protein	gnl|CDD|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.80953e-16
CP029541.1|AWN25025.1|365185_365656_+|DNA-mismatch-repair-protein-MutT	gnl|CDD|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.51972e-52
CP029541.1|AWN25030.1|373360_373762_+|IS5-family-transposase	gnl|CDD|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.81195e-27
CP029541.1|AWN25032.1|377167_377545_+|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.60638e-23
CP029541.1|AWN25039.1|383947_385582_+|long-chain-fatty-acid--CoA-ligase	gnl|CDD|235731	PRK06188, PRK06188, acyl-CoA synthetase; Validated.	3.11242e-115
CP029541.1|AWN25037.1|381345_381780_+|lasso-peptide-biosynthesis-B2-protein	gnl|CDD|379206	pfam13471, Transglut_core3, Transglutaminase-like superfamily. This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.	6.51619e-21
CP029541.1|AWN25042.1|388336_389218_-|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.000130066
CP029541.1|AWN25035.1|379163_381020_+|lasso-peptide-isopeptide-bond-forming-cyclase	gnl|CDD|238949	cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .	6.27926e-26
CP029541.1|AWN25031.1|374467_375655_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	7.14937e-102
CP029541.1|AWN25029.1|372614_373112_-|DUF1772-domain-containing-protein	gnl|CDD|378020	pfam08592, DUF1772, Domain of unknown function (DUF1772). This domain is of unknown function.	8.88453e-10
CP029541.1|AWN25043.1|389276_390065_-|glyoxalase	gnl|CDD|319947	cd08359, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.23253e-20
CP029541.1|AWN25033.1|377541_378126_+|hypothetical-protein	gnl|CDD|368835	pfam06304, DUF1048, Protein of unknown function (DUF1048). This family consists of several hypothetical bacterial proteins of unknown function.	0.000437923

Protein sequences

>CP029541.1|AWN25033.1|377541_378126_+|hypothetical-protein
MTDQRTMTNQQILAVCRSNWEYRGIDDGSVREMLDELSAHLEDAAAAGRTPQDVVGDDVKKFAASWARARTPFARRLLRTAAMVCFVIGWLILARCLVRWTTEWVVSVDDVAFWAVVAAVTVAWELRRGSLGLGRNLAVALVAGLAAVLLAQWLGGDEALFTLPLWAAPVLLLPGLPYAVADARGRKSTAPSID
>CP029541.1|AWN25032.1|377167_377545_+|PadR-family-transcriptional-regulator
MTKGLPAIGDQRRSQLLRGVLDLCLLSLIAERPRYGFEFVAALADNELDLVSEGSIYPLLARLERDGLISSYRAPSASGGAPRKYYRLTEAGRAELASGRAVWHAFSGRVGRILTATEPTGGSAP
>CP029541.1|AWN25031.1|374467_375655_+|cytochrome-P450
MTDPTQDPRFLQDPYPTYAAMRSICPVQSVPAGSGGRASYLITGYAEARQALNDARLSKDTAAFFAGKESQRRLHPAVAHTMLASDPPQHTRLRKLVTEAFTTGAVTELRPFIARVTNKLLDQWPVDEQVDVVASLAVPLPVIVICELLGVPASDRPDVQRWSGELFASGAPTVIDAASHSLANYMTGLIADKRSRPGNALLDRLISARDGDDRLSEEELVSLGVLLLVAGHETTTNFLGNAVLALLQHPSEIQRLRQHPAEIASSLDELLRFDPPISTATFRFTTEAVTLGGTQIPAGKPVLVAIGAANRDPERWPSPDELDLDRSATAHLSFGHGIHRCVGAPLAKAEVEIALRSLLTRYPTIRLAVPTEQLTWRRTRLVRGLSKLPVLPYPA
>CP029541.1|AWN31821.1|373758_374463_+|hypothetical-protein
MGALLGSFALAVASYAPLFENAAEGVVPNVSRLLSNVASLAAATAVLAVSFQLNVTSPALAVLLICLGLTLPAVVYPISQVRRRRWEVRSFEALTFLWQDLAAAMPENVLSSADFSEEAANDSDFLLQRRVIEISDGILALGPYRSRRVQETAQRTFEAGTEEGAAAVEAAVVKAALAAAKAGRFADEVASRSADAASRKDLRADTQWLLLVADAYAHRAGRVVDGDQPAKVGA
>CP029541.1|AWN25030.1|373360_373762_+|IS5-family-transposase
MDMWRDDLSDAEWDRLRPFLPVSNRRCGRWRDHRQVIDGILHRVRTGVQWRDLPERFGPWKTVYERHRLWSADGTWERLLQQVQAAEGAAGEIDWDISVDSTIVFLAWPACWRRRPLTGSSAGGHRDRPARGP
>CP029541.1|AWN25029.1|372614_373112_-|DUF1772-domain-containing-protein
MRIRIVHGLALLSTGLFAGAFGYGAANLVPTFNAVPLGMRLSFHAELMKMNGITMQAAMGTAFLSSLTLAVLTGCRARLIAGAASLLTLASFLITRFGNVPINGQIKRWAVTSAPAEHAEILGRWELFNNMRTLTALAAFGLLIVLAVRGLRPVTRPEHDRADKS
>CP029541.1|AWN25028.1|371891_372365_-|cupin
MTTPEGVGSALSEDGNGPLGNRVHHVRAGELDGHAAISGGTVGSKKLWMGLVENAPLTATDNHHHGESEAGIYVVSGHPVFVFHDGLQEVRISADPGDFLLVPPFVPHREENPDPNEPVVVVIARTTQEPIKVSVPELYQVKETGTRQEEDVARLIE
>CP029541.1|AWN25027.1|369758_370604_-|calcium-binding-protein
MRTYRTIAAAATLALVLGATALAAPAAQAAPRATATVVHEDSELWYKAAPGQQNKLTVDEEIEHRGEFESYYVLTFRDRYDIAIDASAASADECSYLLQGDRTVVRCAVEIPQNSDDSDSYDIDLGDKDDTATLEPGSDAWAGVYGGKGNDVLKGSASAMLHGDDGDDRLDGGSGPFGFGSFGGPGNDTLTHCGQDCSGGAGNDSLTGTDEENNLHGDDGNDVLHGKGGADILYGGKGNDKLYGEAGNDTLWGNSGDDVLWGGPGTDTLSGGPGRNELHQD
>CP029541.1|AWN25026.1|369270_369648_+|hypothetical-protein
MLRLLGLQEVFHPLGRVDHSDVEGPLVGPLGGTPVRCRISPGTLRVRVPRHRPGGRPAGAPSGGWPRLSGERFTAVIPADRSRTGQSTDFRRPDGRRTPLSGHTARRPASHTTERVRCLPCHRPG
>CP029541.1|AWN25025.1|365185_365656_+|DNA-mismatch-repair-protein-MutT
MARTEYYDDPNAPEPNSMVVAASAVVTDDHGRILLQRRRDNDLWALPGGGMDLTDSLPGTAVREVKEETGLDVEITGLVGTYTDPKHIIAYTDGEVRRQFNVCFTARITGGQLTISDESTELRFVPPDEIEQLPMHHTQRLRLQHFLEQREKPYLG
>CP029541.1|AWN25034.1|379025_379136_+|lasso-RiPP-family-leader-peptide-containing-protein
MKKAYEAPTLVRLGSFRKKTGLLNSSGNDRLILSKN
>CP029541.1|AWN25035.1|379163_381020_+|lasso-peptide-isopeptide-bond-forming-cyclase
MTETHPGAGRGPGDAHFAVFPDRADAAAVARCFAHPQTRTLTYASGRPWLVGHWHDEDIVTARAGTDALALVGCCPVDSAELERRIGRLRGLSELDAWARSLPGSFHLVAAHDGQLRVQGTASGLRLVFHALVGGVRVAATSSDVLADALGAEPDEEQVAVRLLWPVPHPLLEAPLWREVTAVPPQDALIVAADGRSVRHSRWWTPPEPTRSLADGAPLVRDALTGAVEARTRQGGVVSCDLSGGLDSTSITFLAARSPAKVVASTWPGRDPADTDLYWASQAAGCLPQVEHVVWNADDSPLVYDDLLGIDDLLDEPTIGVMDRSRVLHHLPGLARRGSRLHLTGIGGDHVAWCSEAYYHRLLRRRPLFAVWQLRGFRALWQWPLGGMARALADSRPYGTWLADAGRDLRGPLPASVSSGLGWGMAPRLFDWVTPEAERLAGRALRAAAATAVPLHPDRGLHTDLEQIRSCTRIIRQWDRMAARAGVPMASPFFDDRVIEACLAVRPSERVTPWRYKPLLTTAMRGIVPESCLGRTNKAAASMDASNGLREHRGDLLALWEDSRLERLGLVDGEALRRLAQRPATPGLRDAILYSTIAGEVWLRSLSRPAQDRARTVP
>CP029541.1|AWN25036.1|381094_381349_+|lasso-peptide-biosynthesis-PqqD-family-chaperone
MALRFGDKISTAATDYGTVLLDERSGQYWELNPTAGLIVTTLLAGGDETAAADALLAEFAIDRTRAERDVAALVEELRASGLAA
>CP029541.1|AWN25037.1|381345_381780_+|lasso-peptide-biosynthesis-B2-protein
MTTPSALERPTGVPLARRLAARLVLLPAVALSFLPPHRIRAVLGLVRRGATPASAGQAKAARDAMCAVSLRCAGPRGCLPRSLGAALLCRLSGSWPTWCTGVRVVPPFTAHAWIEVDARPVDEGVPDDYFTRLIAVAPVSRPTR
>CP029541.1|AWN25038.1|381776_383666_+|ABC-transporter-ATP-binding-protein
MTAATTKTPDRSTWGAVTTMYRLTTGHRASVVVATVLTLAGSALGLAQPLLAKNIVDAGGHGRTFWPLLALLATLFVTEAATGAVGRFVLERMGEGVVRGLRHGLIGRLLRLEMNQYHRHRTGDLISRVTTDTTLLRDVVSQALVDLVTGALAAAGAVVLMAWIDPLLLLLVALTVATAALVVASLLKGIRAASAHMQGSVGALAAELERALGALPMVRVHRAEDREATRIGKRVDAAYNAGVRTAKLASVMSPAVELAVQGSFLLVLVIGGLRVNGHANSLGDLVAFLLYASYLVLPLSSVFRAVGLMQRGMGAYQRIAQALAMPAEPEEVVEHAEAAEAVERTAPGGCVVRVTPRRAERTGKGEAPALALHDVRFGYVPDRPVLNGVSFTVPHHGQVALVGRSGAGKSTIFALVARFHEPDSGTLLFDGRPAAELSRGACRARIAVVDQNTHVVHGSLRDNITYAAPDAGDAEVRRVVELARLDGVVRRLPGGLSGVLGERGNTLSAGERQRVALARALLARPALLLLDEPTSHLDAINETALTTLMKEAAQECALLVIAHRLSTVRHADRIIVLEEGRTVASGSHEELLTTSPSYRALAAGQMLRPAQGTSGADAASAAHERPRTP
>CP029541.1|AWN25039.1|383947_385582_+|long-chain-fatty-acid--CoA-ligase
MLVIVNAQQTSEPRTYLDRILEHWYKDEDAEALVQGAQRLTRGEARRRLFELGHALRGQGLAPGDGVGLFLANRVDSVLVQLAVHLIGCRVVFLPPEPGPGELAALVEQSRARAVVTDPLFAGRAADAAGRSIHTPALLSLGPCEQQCTDLLALAAECPDTRPEGVPAPGADEAVTVLYTGGTLGRPKLASHSHRLYNMLVDLVEDVPKYSGSAFFPNMDQGTDRVLASTLLTHGSGHLTSLQALVTGSTLVVLPEFEAGAALTVLREERITATMFVPPMLYAVLDHPECEPGALPELRRIVVGGAATSPSRLQQAVEVFGPVVSQGYGQSEALGITAFGAEDLASEGAGRPELWRSCGRAISDVEIEIRGEDSTAALPVRQVGEVCVRGETVMLGYYEDPERTAAALQDGWLRTGDMGYLDAAGYLYLVDRAKDIIVTGRTSDNVYSRVLEDFLLTLPGVRNAAALGVPDEEYGEAVQIFLATAAGGPDVDPEAVGAAVTGELGELYTPRRTVLLDQLPTTKVGKVDKKALRTAWASGSLDTP
>CP029541.1|AWN25040.1|386367_386562_-|hypothetical-protein
MAQPVRVRGLFEQEGQKLQHIVHSGHPRCRPRSPVAAHEACDRVRAQPPSSVRLSSIRAWSKLH
>CP029541.1|AWN25041.1|386984_387263_+|hypothetical-protein
MSDMTDEEIVRAVRGFAAMQAEREKLAERVAALRTAVSPEDLAERNRFGEAMAKMDAKLLLESVEVLDRMGMTMAAQACFYVAKKEGLATQL
>CP029541.1|AWN25042.1|388336_389218_-|GNAT-family-N-acetyltransferase
MSVRITALTDPEETSAGRRLAWLASGPDGSPAGYAFLRLFTREGQRHLAEVDVQVHPAERRRRAGTLLLDAAVAAARWDGRSTGIAQAAAGSPGAAFLTARGFRAALALTYARLPLAEADLPALTAISETPPAGYRLTAWEGTVPNELADTFVASRRAMDDMPMGAVDYGTVVWDLDRVRAAATAVSARGDILHTVAAIDRSDGAVAGFTELVVPGSGTGDAQHYGTAVLPEHRGRGLARWMKAAAIVQARECHPRLGGLLTDTADNNPHMRRVNDELGYLPTHTAHEYQLDL
>CP029541.1|AWN25043.1|389276_390065_-|glyoxalase
MNVTTSTLSLTVADVDASREFFCTHLGYQVAMAADGFASLTRGDAAADIVLLRSGSEVLPPEQRDQQATGLIFALTVTGIEAEERRLREAGAPITMPLREEPWGERLFQLTDLNGIIVQFVEWAAPDEPAQTEEPEESAMLVITPTAENVTESPNARMTGLAAPSRGSTELSTWTVAMEAGQTGPEHVISREQVWMVTAGVLDVTCDGRTEKISAGQTFVLPPDVLRQVHAPRAAEAHVAMCADGVASVPGTEGTRILPWAQ

Crispr_ID: CP029541_2

• CRISPR_ID: CP029541_2
• CRISPR_location: 385965-386237
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of CP029541_2

Consensus_repeat	Method
GTGCTCTCCGCGCGAGCGGAGGTGGGCCG	CRISPRCasFinder
GTGCTCTCCGCGCNAGCGGAGGTG	CRT

spacers of CP029541_2

>2.1|385994|32|CP029541|CRISPRCasFinder
GTGATCTCTCGCGGACGTCGGGACCAGGGTGC
>2.2|386055|32|CP029541|CRISPRCasFinder
GACTTCGAGCGGATGCGCGCCCGGTGGGACCG
>2.3|386116|32|CP029541|CRISPRCasFinder
CAGGGCCAGGACGCGTGGGCACGGGCGTACAT
>2.4|386177|32|CP029541|CRISPRCasFinder
ACTCACGGCGTGGCCGTCAAGTTGGAGTTGAG
>2.5|385989|37|CP029541|CRT
AGCCGGTGATCTCTCGCGGACGTCGGGACCAGGGTGC
>2.6|386050|37|CP029541|CRT
GGCCGGACTTCGAGCGGATGCGCGCCCGGTGGGACCG
>2.7|386111|37|CP029541|CRT
AGCCGCAGGGCCAGGACGCGTGGGCACGGGCGTACAT
>2.8|386172|37|CP029541|CRT
GGCTGACTCACGGCGTGGCCGTCAAGTTGGAGTTGAG

CRISPR arrays and Neighbor proteins around CP029541_2

CRISPR arrays

The CRISPR arrays of CP029541_2

>merge|CP029541|2|385965-386237|CRISPRCasFinder,CRT
CTCACCTCCGCCTGAGCGGAGGTGAGCCGGTGATCTCTCGCGGACGTCGGGACCAGGGTGCGTGCTCTCCGCGCGAGCGGAGGTGGGCCGGACTTCGAGCGGATGCGCGCCCGGTGGGACCGGTGCTCTCCGCGCGAGCGGAGGTGAGCCGCAGGGCCAGGACGCGTGGGCACGGGCGTACATGTGCTCTCCGCGCAGGCGGAGGTGGGCTGACTCACGGCGTGGCCGTCAAGTTGGAGTTGAGGGGCTCTCCACGCAAGGGGCAGATGGACG

>CP029541|2|2|385965-386237|CRISPRCasFinder
CTCACCTCCGCCTGAGCGGAGGTGAGCCG	GTGATCTCTCGCGGACGTCGGGACCAGGGTGC
GTGCTCTCCGCGCGAGCGGAGGTGGGCCG	GACTTCGAGCGGATGCGCGCCCGGTGGGACCG
GTGCTCTCCGCGCGAGCGGAGGTGAGCCG	CAGGGCCAGGACGCGTGGGCACGGGCGTACAT
GTGCTCTCCGCGCAGGCGGAGGTGGGCTG	ACTCACGGCGTGGCCGTCAAGTTGGAGTTGAG
GGGCTCTCCACGCAAGGGGCAGATGGACG

>CP029541|2|1|385965-386232|CRT
CTCACCTCCGCCTGAGCGGAGGTG	AGCCGGTGATCTCTCGCGGACGTCGGGACCAGGGTGC
GTGCTCTCCGCGCGAGCGGAGGTG	GGCCGGACTTCGAGCGGATGCGCGCCCGGTGGGACCG
GTGCTCTCCGCGCGAGCGGAGGTG	AGCCGCAGGGCCAGGACGCGTGGGCACGGGCGTACAT
GTGCTCTCCGCGCAGGCGGAGGTG	GGCTGACTCACGGCGTGGCCGTCAAGTTGGAGTTGAG
GGGCTCTCCACGCAAGGGGCAGAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN25038.1|381776_383666_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224055
CP029541.1|AWN25036.1|381094_381349_+|lasso-peptide-biosynthesis-PqqD-family-chaperone	unknown	unknown	gnl|CDD|377508
CP029541.1|AWN31822.1|390139_390724_-|deaminase	unknown	unknown	gnl|CDD|223340
CP029541.1|AWN25044.1|390836_391460_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
CP029541.1|AWN25033.1|377541_378126_+|hypothetical-protein	unknown	unknown	gnl|CDD|368835
CP029541.1|AWN25032.1|377167_377545_+|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609
CP029541.1|AWN31821.1|373758_374463_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN31823.1|396737_403634_+|polyketide-synthase	unknown	unknown	gnl|CDD|225858
CP029541.1|AWN25039.1|383947_385582_+|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl|CDD|235731
CP029541.1|AWN25037.1|381345_381780_+|lasso-peptide-biosynthesis-B2-protein	unknown	unknown	gnl|CDD|379206
CP029541.1|AWN25041.1|386984_387263_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN25034.1|379025_379136_+|lasso-RiPP-family-leader-peptide-containing-protein	unknown	unknown	unknown
CP029541.1|AWN25035.1|379163_381020_+|lasso-peptide-isopeptide-bond-forming-cyclase	unknown	unknown	gnl|CDD|238949
CP029541.1|AWN25031.1|374467_375655_+|cytochrome-P450	unknown	unknown	gnl|CDD|225035
CP029541.1|AWN25046.1|403635_408333_+|beta-ketoacyl-synthase	unknown	unknown	gnl|CDD|238429
CP029541.1|AWN25047.1|408329_408653_+|acyl-carrier-protein	unknown	unknown	gnl|CDD|180033
CP029541.1|AWN25045.1|392926_394900_-|collagenase	unknown	unknown	gnl|CDD|366791
CP029541.1|AWN25040.1|386367_386562_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN25042.1|388336_389218_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
CP029541.1|AWN25043.1|389276_390065_-|glyoxalase	unknown	unknown	gnl|CDD|319947

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN25038.1|381776_383666_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.03233e-142
CP029541.1|AWN25036.1|381094_381349_+|lasso-peptide-biosynthesis-PqqD-family-chaperone	gnl|CDD|377508	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD). This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.	1.60837e-14
CP029541.1|AWN25044.1|390836_391460_+|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	3.29395e-09
CP029541.1|AWN25033.1|377541_378126_+|hypothetical-protein	gnl|CDD|368835	pfam06304, DUF1048, Protein of unknown function (DUF1048). This family consists of several hypothetical bacterial proteins of unknown function.	0.000437923
CP029541.1|AWN25032.1|377167_377545_+|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.60638e-23
CP029541.1|AWN25046.1|403635_408333_+|beta-ketoacyl-synthase	gnl|CDD|238429	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.	9.48688e-146
CP029541.1|AWN31823.1|396737_403634_+|polyketide-synthase	gnl|CDD|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	2.4157e-171
CP029541.1|AWN25039.1|383947_385582_+|long-chain-fatty-acid--CoA-ligase	gnl|CDD|235731	PRK06188, PRK06188, acyl-CoA synthetase; Validated.	3.11242e-115
CP029541.1|AWN25037.1|381345_381780_+|lasso-peptide-biosynthesis-B2-protein	gnl|CDD|379206	pfam13471, Transglut_core3, Transglutaminase-like superfamily. This family includes uncharacterized proteins that are related to the transglutaminase like domain pfam01841.	6.51619e-21
CP029541.1|AWN25042.1|388336_389218_-|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.000130066
CP029541.1|AWN25035.1|379163_381020_+|lasso-peptide-isopeptide-bond-forming-cyclase	gnl|CDD|238949	cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .	6.27926e-26
CP029541.1|AWN25031.1|374467_375655_+|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	7.14937e-102
CP029541.1|AWN25047.1|408329_408653_+|acyl-carrier-protein	gnl|CDD|180033	PRK05350, PRK05350, acyl carrier protein; Provisional.	6.88877e-07
CP029541.1|AWN25045.1|392926_394900_-|collagenase	gnl|CDD|366791	pfam01752, Peptidase_M9, Collagenase. This family of enzymes break down collagens.	2.24042e-142
CP029541.1|AWN31822.1|390139_390724_-|deaminase	gnl|CDD|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	2.8114e-19
CP029541.1|AWN25043.1|389276_390065_-|glyoxalase	gnl|CDD|319947	cd08359, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.23253e-20

Protein sequences

>CP029541.1|AWN25039.1|383947_385582_+|long-chain-fatty-acid--CoA-ligase
MLVIVNAQQTSEPRTYLDRILEHWYKDEDAEALVQGAQRLTRGEARRRLFELGHALRGQGLAPGDGVGLFLANRVDSVLVQLAVHLIGCRVVFLPPEPGPGELAALVEQSRARAVVTDPLFAGRAADAAGRSIHTPALLSLGPCEQQCTDLLALAAECPDTRPEGVPAPGADEAVTVLYTGGTLGRPKLASHSHRLYNMLVDLVEDVPKYSGSAFFPNMDQGTDRVLASTLLTHGSGHLTSLQALVTGSTLVVLPEFEAGAALTVLREERITATMFVPPMLYAVLDHPECEPGALPELRRIVVGGAATSPSRLQQAVEVFGPVVSQGYGQSEALGITAFGAEDLASEGAGRPELWRSCGRAISDVEIEIRGEDSTAALPVRQVGEVCVRGETVMLGYYEDPERTAAALQDGWLRTGDMGYLDAAGYLYLVDRAKDIIVTGRTSDNVYSRVLEDFLLTLPGVRNAAALGVPDEEYGEAVQIFLATAAGGPDVDPEAVGAAVTGELGELYTPRRTVLLDQLPTTKVGKVDKKALRTAWASGSLDTP
>CP029541.1|AWN25038.1|381776_383666_+|ABC-transporter-ATP-binding-protein
MTAATTKTPDRSTWGAVTTMYRLTTGHRASVVVATVLTLAGSALGLAQPLLAKNIVDAGGHGRTFWPLLALLATLFVTEAATGAVGRFVLERMGEGVVRGLRHGLIGRLLRLEMNQYHRHRTGDLISRVTTDTTLLRDVVSQALVDLVTGALAAAGAVVLMAWIDPLLLLLVALTVATAALVVASLLKGIRAASAHMQGSVGALAAELERALGALPMVRVHRAEDREATRIGKRVDAAYNAGVRTAKLASVMSPAVELAVQGSFLLVLVIGGLRVNGHANSLGDLVAFLLYASYLVLPLSSVFRAVGLMQRGMGAYQRIAQALAMPAEPEEVVEHAEAAEAVERTAPGGCVVRVTPRRAERTGKGEAPALALHDVRFGYVPDRPVLNGVSFTVPHHGQVALVGRSGAGKSTIFALVARFHEPDSGTLLFDGRPAAELSRGACRARIAVVDQNTHVVHGSLRDNITYAAPDAGDAEVRRVVELARLDGVVRRLPGGLSGVLGERGNTLSAGERQRVALARALLARPALLLLDEPTSHLDAINETALTTLMKEAAQECALLVIAHRLSTVRHADRIIVLEEGRTVASGSHEELLTTSPSYRALAAGQMLRPAQGTSGADAASAAHERPRTP
>CP029541.1|AWN25037.1|381345_381780_+|lasso-peptide-biosynthesis-B2-protein
MTTPSALERPTGVPLARRLAARLVLLPAVALSFLPPHRIRAVLGLVRRGATPASAGQAKAARDAMCAVSLRCAGPRGCLPRSLGAALLCRLSGSWPTWCTGVRVVPPFTAHAWIEVDARPVDEGVPDDYFTRLIAVAPVSRPTR
>CP029541.1|AWN25036.1|381094_381349_+|lasso-peptide-biosynthesis-PqqD-family-chaperone
MALRFGDKISTAATDYGTVLLDERSGQYWELNPTAGLIVTTLLAGGDETAAADALLAEFAIDRTRAERDVAALVEELRASGLAA
>CP029541.1|AWN25035.1|379163_381020_+|lasso-peptide-isopeptide-bond-forming-cyclase
MTETHPGAGRGPGDAHFAVFPDRADAAAVARCFAHPQTRTLTYASGRPWLVGHWHDEDIVTARAGTDALALVGCCPVDSAELERRIGRLRGLSELDAWARSLPGSFHLVAAHDGQLRVQGTASGLRLVFHALVGGVRVAATSSDVLADALGAEPDEEQVAVRLLWPVPHPLLEAPLWREVTAVPPQDALIVAADGRSVRHSRWWTPPEPTRSLADGAPLVRDALTGAVEARTRQGGVVSCDLSGGLDSTSITFLAARSPAKVVASTWPGRDPADTDLYWASQAAGCLPQVEHVVWNADDSPLVYDDLLGIDDLLDEPTIGVMDRSRVLHHLPGLARRGSRLHLTGIGGDHVAWCSEAYYHRLLRRRPLFAVWQLRGFRALWQWPLGGMARALADSRPYGTWLADAGRDLRGPLPASVSSGLGWGMAPRLFDWVTPEAERLAGRALRAAAATAVPLHPDRGLHTDLEQIRSCTRIIRQWDRMAARAGVPMASPFFDDRVIEACLAVRPSERVTPWRYKPLLTTAMRGIVPESCLGRTNKAAASMDASNGLREHRGDLLALWEDSRLERLGLVDGEALRRLAQRPATPGLRDAILYSTIAGEVWLRSLSRPAQDRARTVP
>CP029541.1|AWN25034.1|379025_379136_+|lasso-RiPP-family-leader-peptide-containing-protein
MKKAYEAPTLVRLGSFRKKTGLLNSSGNDRLILSKN
>CP029541.1|AWN25033.1|377541_378126_+|hypothetical-protein
MTDQRTMTNQQILAVCRSNWEYRGIDDGSVREMLDELSAHLEDAAAAGRTPQDVVGDDVKKFAASWARARTPFARRLLRTAAMVCFVIGWLILARCLVRWTTEWVVSVDDVAFWAVVAAVTVAWELRRGSLGLGRNLAVALVAGLAAVLLAQWLGGDEALFTLPLWAAPVLLLPGLPYAVADARGRKSTAPSID
>CP029541.1|AWN25032.1|377167_377545_+|PadR-family-transcriptional-regulator
MTKGLPAIGDQRRSQLLRGVLDLCLLSLIAERPRYGFEFVAALADNELDLVSEGSIYPLLARLERDGLISSYRAPSASGGAPRKYYRLTEAGRAELASGRAVWHAFSGRVGRILTATEPTGGSAP
>CP029541.1|AWN25031.1|374467_375655_+|cytochrome-P450
MTDPTQDPRFLQDPYPTYAAMRSICPVQSVPAGSGGRASYLITGYAEARQALNDARLSKDTAAFFAGKESQRRLHPAVAHTMLASDPPQHTRLRKLVTEAFTTGAVTELRPFIARVTNKLLDQWPVDEQVDVVASLAVPLPVIVICELLGVPASDRPDVQRWSGELFASGAPTVIDAASHSLANYMTGLIADKRSRPGNALLDRLISARDGDDRLSEEELVSLGVLLLVAGHETTTNFLGNAVLALLQHPSEIQRLRQHPAEIASSLDELLRFDPPISTATFRFTTEAVTLGGTQIPAGKPVLVAIGAANRDPERWPSPDELDLDRSATAHLSFGHGIHRCVGAPLAKAEVEIALRSLLTRYPTIRLAVPTEQLTWRRTRLVRGLSKLPVLPYPA
>CP029541.1|AWN31821.1|373758_374463_+|hypothetical-protein
MGALLGSFALAVASYAPLFENAAEGVVPNVSRLLSNVASLAAATAVLAVSFQLNVTSPALAVLLICLGLTLPAVVYPISQVRRRRWEVRSFEALTFLWQDLAAAMPENVLSSADFSEEAANDSDFLLQRRVIEISDGILALGPYRSRRVQETAQRTFEAGTEEGAAAVEAAVVKAALAAAKAGRFADEVASRSADAASRKDLRADTQWLLLVADAYAHRAGRVVDGDQPAKVGA
>CP029541.1|AWN25040.1|386367_386562_-|hypothetical-protein
MAQPVRVRGLFEQEGQKLQHIVHSGHPRCRPRSPVAAHEACDRVRAQPPSSVRLSSIRAWSKLH
>CP029541.1|AWN25041.1|386984_387263_+|hypothetical-protein
MSDMTDEEIVRAVRGFAAMQAEREKLAERVAALRTAVSPEDLAERNRFGEAMAKMDAKLLLESVEVLDRMGMTMAAQACFYVAKKEGLATQL
>CP029541.1|AWN25042.1|388336_389218_-|GNAT-family-N-acetyltransferase
MSVRITALTDPEETSAGRRLAWLASGPDGSPAGYAFLRLFTREGQRHLAEVDVQVHPAERRRRAGTLLLDAAVAAARWDGRSTGIAQAAAGSPGAAFLTARGFRAALALTYARLPLAEADLPALTAISETPPAGYRLTAWEGTVPNELADTFVASRRAMDDMPMGAVDYGTVVWDLDRVRAAATAVSARGDILHTVAAIDRSDGAVAGFTELVVPGSGTGDAQHYGTAVLPEHRGRGLARWMKAAAIVQARECHPRLGGLLTDTADNNPHMRRVNDELGYLPTHTAHEYQLDL
>CP029541.1|AWN25043.1|389276_390065_-|glyoxalase
MNVTTSTLSLTVADVDASREFFCTHLGYQVAMAADGFASLTRGDAAADIVLLRSGSEVLPPEQRDQQATGLIFALTVTGIEAEERRLREAGAPITMPLREEPWGERLFQLTDLNGIIVQFVEWAAPDEPAQTEEPEESAMLVITPTAENVTESPNARMTGLAAPSRGSTELSTWTVAMEAGQTGPEHVISREQVWMVTAGVLDVTCDGRTEKISAGQTFVLPPDVLRQVHAPRAAEAHVAMCADGVASVPGTEGTRILPWAQ
>CP029541.1|AWN31822.1|390139_390724_-|deaminase
MRKLTYFIGTTIDGYIAAPDGDFDFFTPHITEDYLPFLTTEFADALPTPGRAALGIADTPNTRFDAVVMGRGTYDPGLAMGLTSPYAQLRQIVFSGSLATGPDPAVEVTDEDPLTLVRKLKQEDGLGIWLCGGADLAGQLLPEIDELIVKQYPIVAGTGIPLFRADFSPYTFRLADSRVFEGGNVVLTYAKVSD
>CP029541.1|AWN25044.1|390836_391460_+|TetR-family-transcriptional-regulator
MGLRESKKQETRQLISDCATRLFIEQGFEQTTIAEIAAAARVSKKTVTNYFPRKEDLALDHHEAFTEGLARTVAERGSGEEPLTALGRTFRTALQEHSPVVGFTGPAFARMVADSPTLTARLRELHDQREEALAAALTAAAPDPDPAIAPRAGAALIAAADRLLFRRIQELTLAGHTDDQIEATLIPEADHLRTLLAAALGNHPTGR
>CP029541.1|AWN25045.1|392926_394900_-|collagenase
MRRPPTFKKLARLLIATVAAAGLGLTTLAPNGGAAPAGAAAPKPAPRSGPAPQPASATVLAADLAPGHAADPARSATNAANSAQRPPLPAAQNAAERKKARSAAKAAADCNVSDFTSKTGAALVDQIKQSETTCINTLFNVAGEDSKALFREEQMVTVANAFKDVATNYPGDNSTSAAQVVLYLRAGYYIQYNQPENVGEYGPTLKSAIQGALDGFFGSSHAFDVTEANGETLAETVTLIDSSEENARYLDVVKRLQKDYNSSYDEFYGMVAAVNNTYTVLFRGHQLPEFVEAVKADPSVLTGMRDFAVAHDDLLGTDKSYLASNAGRELGRFLQHAGLKDTVKPLVKELLGRSEITGRTAPLWVGLAEMTDEFDKENCAEYDTCDLQNRVRDAVLTDKHECGPSAKVLAQELTASELSATCDSILKQDPVFHGIVKDDGPVKDDKNTSIEIVAFNSSTDYKTYAGVVFGIDTNNGGMYLEGDPAAEGNQPRFIAYEQPAQDGAFQIWNLNHEYTHYLDGRFDMYGDFAAGQTTPTVMWVEGFAEYVSYSYRGITYDRAIEEAGKNTYKLSQLFETTYDNADTTRVYQWGYLGVRYMLQSHAEDVATLLGHYRAGEYDAAHSLLRDTIGTKYDADFADWLSKCAGGDCGQLPARSGR
>CP029541.1|AWN31823.1|396737_403634_+|polyketide-synthase
MLDLGAGDRRAREALSLLRQWAPGPFGVRIGGGCALTPSDLADGGGVHTVLLAANAPMGPGDFGAVQQVLVEVTCLEEARSAARAGAYGLVARGHESGGRIGELSTFVLLQQLLADDELTLPVWACGGIGPHTAAAAVVGGAAGVVLDTQLALLKESGLPEDVAAAVRTMDGSETVVAGGYRVLRRRGPQAPSIPPDPADVAVLLGARDLRTQLLPIGQDGFLAARFAQQWGDVGRAVRAVADAVVEAARHDGPSGALCPDSPMSRAMGTPLPIAQGPMTRVSDQAQFASAVAEHGALPFLALALAGPEQTRALLEQTRTALGDRPWGVGVLGFAPEQVKAAQLEAIKEFRPACAIIAGGRPSQASALEDVGVETFLHVPSPGLLQQFLDAGARKFVFEGSECGGHVGPRSSFALWEAQVALLTEFLDSGNGADPGELRVFFAGGIHDERSAAMVAALAAPLTARGVCVGVLMGTAYLFTEEAVGRAAVRPQFQRQVVAARRTELLETAPGHATRCVSSPFTDDYLGIKDELRAQGVPDRQTWERLEQLNVGRLRIASKGVERLGDELVEVDEERQLAEGMFMAGQVAVLRSATTTVPALHTSVSSAAADFFIARARQLRERFGTGQVRDDTPAPAPLDIAVVGMACMFPGAPDLTDYWANVVAGADAVTEVPEERWDTQVYYAPEAGGGRTESKWGGFLPDIPFDPLRYGIPPSSLGSIEPVQLLALEAARRALEDAGYEERDFDRSRASVVFGAEAGSDLSNATTLRALLPAYLGQLPPELDAQLPRLTEDSFPGMLANVISGRIANRLDLRGANYTVDAACASSLAAVDVACKELAGGTSDLVLCGGADLHNGINDYLLFSSVHALSPTGRSRTFDSAADGIALGEGVACLVLKRLADAERDGDRVYAVIKGVGSASDGKSLGLTAPRREGQRAALERSYRNAGVSPAQVGLVEAHGTGTVVGDRTELSALTEVFTEAGAVPGSCVLGSVKSQIGHTKCAAGLAGLIKTAMALYTGVRPPTAQLRRPNPAWQEGVSPFAFHTAARPWAAPPAERFAGVSAFGFGGTNFHVVLRAHDAGPPPEHGLAAWPAELFVFHGTDREDAARSIEQLLALENDRDGRPWRLRDFALAAARRGDASGKPVQSAVVAGDLDELAGLLKRALAGEHDPSAGVFTAGAEGRDRGDGAQGAGDGAAVAFLFPGQGSQRTGMLADLFVAFPELQRYLRLGRQWADAVHPPTAFDPAVADEQRARLTDTRTAQPALGITGLAAHDLLGRAGVRPDMTAGHSYGELVALCAAGAFGPETLLELSAARAEAILDAAGPDPGTMAAVAAGPEDVAEQLAAAGLADRVVVANHNAPAQSVISGPTEAVGDAVRLLRENGIAAKPIPVACAFHSPGVADAGAHFAEVLADLPLREPETPVWSNRTAAAYSGRPEGIRAELAAQLASPVRFVAQIEAMYEAGARVFVETGPGSVLTGLVAKILGDRPHTAVSCEPPGGQGLRGFLTALAHLALAGVRVDAGGLLRGRGAVEPGRMPSAAIPSSPSDTRPGWTVNGQLVRTRDGSPLPGSLMPARRIPEMTVTKAHSDDVVANRDQMIHDFLRAGREIVAAQRDVLLTYFGGAADLPAKAPVPTAPVEPVPVPAALLPAEPAPAAHAQPPAAPDQAPQSAAPQALSGADVLRTVLDIISERTGYPLEMIEPDLDLEADLSIDSIKRIEIVGELAARVGFGGPDSAALPQLDDAELETLAKARTAAGMADSLAVRLPVPEHALKPGASGVRTPDHPPVAEGSPDAVSVAGEAPSRLVLREVALAQPDGDTAALAGKRFALLGSRGPVAESLAALLDEHGAHSLIRDPGHLLDDEDGPLDGVFHLEALASTGGSGTSGPLLPDSFPVFQAALRRGPRWFIAAAPDSAAPALSPDGRADGLRGMFRTIAREYPDTLARVVELAPDESPAQLAAALVGELLAGKDAPVVLRSAGSRRGLELVEADLGPLAGRGAGPAGDGAAEAEAMGLDHDSVVLLVGGARGITARFAATLAAASRCRIELVGRTPAPGGPEDEATRKATDRTALRAALAAQGGRSAAEIEQAVARILAHREITETVERLRGLGSAVRYHSADMRDTEAVRRLVTGIHAEHGRLDGVVHAAGVIEDRVLADKDLDSFRRVFGTKVEGARTLLTTLEGLPGGPRFTVLFGSIAAVLGNRGQVDYAAANDALQHLGSRWAARTGNRALTVHWGPWAPTGEHGGMVTPELAREYARRGVKLIDPEEGTLCLLRELAYGEPSADAVVYTASGW
>CP029541.1|AWN25046.1|403635_408333_+|beta-ketoacyl-synthase
MTGETYGNRPQVAIVGMAVLFPGAADLQAYWHNLAGGVDAISDVPPGRWDASFYDPAAADRSDRVYCRRGGFVDDLAKVEVTRFGIMPNSVPGTEPEQLIALQVAADAIADAGGERRLPARDRVGVILGRGGYLTPGLARGTQSVVTSNQLVRTLGELLPGLGAEQLERVRKAFTRQLGSDEPEQAIGLVPNLTASRVANRLDLRGPAYTVDAACASSLVAVDQAVGELAAGRCDMVLAGGVHHCHDITLWSVFARLRALSPSQRIRPFHRAADGLLIGEGTGVVALKRLDDAVRDDDRIYAVIRGTGVASDGRSGSLVNPDPSGQVGAVRQAWQAAGLDPAAPGSVGLLEAHGTATPSGDAAELTTLAEVFGPGGGDRDRPVIGSVKSMIGHTMPAAGVAGLVKAALAVHHAVLPPTLHCDDPHPALERTRFRTIAAARDWETGGGQRVRRAGVNAFGFGGINAHVVLESAPGAPAVRRPRPAAVVREPERVLRLAADSPQQLAALLDTDDSGVLAAAGDQLAPGGGRTRLGIVDPTAKRLALARKAVTKGLPWRGRNDVWFTPEPLLGGDGGGRLAFVFPGLEADFAPHVADVAEHFGLSALLPSLRDAGPAEVADVGRHGAEVIGVGRVLDAALRRMGIVPDAVAGHSVGEWTAMATAGLYAGRAVDEFTQSFDPEQVRVPGLAFAVLGAPADRVRAALEDHTGVVLSHDNAPNQSMVCGPPERVDELVRWFRAQRVICQVLPFQSGFHTPMLAPYLDEIRHHAEQFELHPPTVPVWSATTASEYPEAEKDVRELFLRHLLEPVRFRPLTEAMYEAGFRVFIQAGTGQVGSLIGSTLQGRPHLVVAANSPHRSGLAQLLRVTTALWADGGGPDAEALRSARRTAPRRAPMPLNLGGKLVSLDRETVAGVRSALAAGQPAVADDGGELAALERLSDRHSAVAAELRALVRDTAGAAEALTAAAAGSAHAAVRPAAAAASVRPEPPQPPVGPASPQPPVRPTPPQPPVRPAPGGPPAAPAPHAPGGREERTVLRVSTDAMPYLRDHCFFVQRPGWPDEADRRPVVPATTVLQHMVESAERARPGSRAVAVHQVRLDRWVTAAPAVDVPVGVTPLEAGRVAVTFGQYARAQVELAAHHPGDPPRPWQWAPSAERQPEITAEELYRDRWMFHGPLFQGVIELTAIGQAHVRGVLTAPPAPGALLDNVGQLLGYWIMTTLTERTMVFPVRMKSIRFFGPHPAPGTRLECLIKITSITDAAVEADMQLVREGRVWAHITGWEDHRFDNHLDTREQERFPERHTLSRIQEGGWSLVFDRCRDLASRDLVMRRHLGSAEREEYAACPPRGRKQWLLGRIAVKDAVRQWLWDHGEGPVFPAEIRVSNDASGRPRASGLHGRALPGLDVTLAHRAEAAVALVRPCAPYGQPGPGIDVEEVTERPARTLTAALGPAELALLTARCTATGEPEVLWFTRFWAAKEAVSKAEGTGLQGRPKRFTVVAAQPDELLVDVDGRRYPVHCRRIGNPADLPKREYVVAWTAGPTDGSSDDSNENTSNSDNNATDERETQR
>CP029541.1|AWN25047.1|408329_408653_+|acyl-carrier-protein
MNSGQPTTPAAANEEEVFNEVVGMLRAVLGDYGLDEADITMDTRFHEDLDLESIDLVTLGSHLEARYGDTVNFAEYLAGLGLEQIISLSIGQLVEHVAACLRDSEEH

Crispr_ID: CP029541_3

• CRISPR_ID: CP029541_3
• CRISPR_location: 2133135-2133244
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_3

Consensus_repeat	Method
GGCGGCCGTGCAGCGGGCGGCGGCGACGG	CRISPRCasFinder

spacers of CP029541_3

>3.1|2133164|52|CP029541|CRISPRCasFinder
GGGCGCCGCGTGCCCAGGCTCAGGGTGCGGCGCGGAGCCAGGCCCAAGGTGG

CRISPR arrays and Neighbor proteins around CP029541_3

CRISPR arrays

The CRISPR arrays of CP029541_3

>merge|CP029541|3|2133135-2133244|CRISPRCasFinder
GGCGGCCGTGCAGCGGGCGGCGGCGACGGGGGCGCCGCGTGCCCAGGCTCAGGGTGCGGCGCGGAGCCAGGCCCAAGGTGGGGCGGCCGTGCAGCGGGCGGCGGCGACGG

>CP029541|3|3|2133135-2133244|CRISPRCasFinder
GGCGGCCGTGCAGCGGGCGGCGGCGACGG	GGGCGCCGCGTGCCCAGGCTCAGGGTGCGGCGCGGAGCCAGGCCCAAGGTGG
GGCGGCCGTGCAGCGGGCGGCGGCGACGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN26136.1|2141794_2142352_+|phage-tail-protein	unknown	unknown	gnl|CDD|274050
CP029541.1|AWN26137.1|2142354_2143677_+|hypothetical-protein	unknown	unknown	gnl|CDD|237030
CP029541.1|AWN26132.1|2136578_2137358_+|LysM-domain-containing-protein	unknown	unknown	gnl|CDD|212030
CP029541.1|AWN26135.1|2139779_2141798_+|putative-baseplate-assembly-protein	unknown	unknown	gnl|CDD|274051
CP029541.1|AWN26126.1|2126763_2127966_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN26123.1|2119331_2119991_+|DUF4255-domain-containing-protein	unknown	unknown	gnl|CDD|379449
CP029541.1|AWN26139.1|2145238_2146645_-|hypothetical-protein	unknown	unknown	gnl|CDD|239109
CP029541.1|AWN26138.1|2143979_2145134_+|alanine-dehydrogenase	unknown	unknown	gnl|CDD|240658
CP029541.1|AWN26129.1|2131996_2132410_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN26125.1|2123532_2126430_-|AfsR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|276938
CP029541.1|AWN26127.1|2129900_2131478_+|phage-tail-protein	unknown	unknown	gnl|CDD|226028
CP029541.1|AWN31960.1|2128189_2129815_+|hypothetical-protein	unknown	unknown	gnl|CDD|379338
CP029541.1|AWN26124.1|2122138_2123494_-|hypothetical-protein	unknown	unknown	gnl|CDD|379501
CP029541.1|AWN26122.1|2118469_2119171_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|225107
CP029541.1|AWN26130.1|2133389_2134022_-|hypothetical-protein	unknown	unknown	gnl|CDD|237865
CP029541.1|AWN31959.1|2120017_2122087_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|223540
CP029541.1|AWN26134.1|2139339_2139780_+|baseplate-protein	unknown	unknown	gnl|CDD|377431
CP029541.1|AWN26131.1|2136139_2136577_+|phage-tail-protein	unknown	unknown	gnl|CDD|377718
CP029541.1|AWN26128.1|2131553_2131997_+|phage-tail-protein	unknown	unknown	gnl|CDD|274049
CP029541.1|AWN26133.1|2137374_2139294_+|type-IV-secretion-protein-Rhs	unknown	unknown	gnl|CDD|226032

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN26136.1|2141794_2142352_+|phage-tail-protein	gnl|CDD|274050	TIGR02242, putative_secreted_protein, phage tail protein domain. This model describes a region of sequence similarity shared by a number of uncharacterized proteins in bacterial genomes, including Geobacter sulfurreducens PCA, Mesorhizobium loti, Streptomyces coelicolor A3(2), Gloeobacter violaceus PCC 7421, and Myxococcus xanthus. In all cases, the genomic region resembles a phage tail region, based on tentative identifications of neighboring genes. A region of this domain resembles a region of TIGR01634, another phage tail protein model. [Mobile and extrachromosomal element functions, Prophage functions].	4.24298e-35
CP029541.1|AWN26124.1|2122138_2123494_-|hypothetical-protein	gnl|CDD|379501	pfam14200, RicinB_lectin_2, Ricin-type beta-trefoil lectin domain-like.	0.000201973
CP029541.1|AWN26135.1|2139779_2141798_+|putative-baseplate-assembly-protein	gnl|CDD|274051	TIGR02243, hypothetical_protein_SCD8A.17c, putative baseplate assembly protein. This family consists of a large, conserved hypothetical protein in phage tail-like regions of at least six bacterial genomes: Gloeobacter violaceus PCC 7421, Geobacter sulfurreducens PCA, Streptomyces coelicolor A3(2), Streptomyces avermitilis MA-4680, Mesorhizobium loti, and Myxococcus xanthus. The C-terminal region is identified by the broader model pfam04865 as related to baseplate protein J from phage P2, but that relationship is not observed directly. [Mobile and extrachromosomal element functions, Prophage functions].	2.94458e-151
CP029541.1|AWN26125.1|2123532_2126430_-|AfsR-family-transcriptional-regulator	gnl|CDD|276938	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain. The Bacterial Transcriptional Activation (BTA) domain is present in the putative transcriptional regulator Mycobacterium EmbR and the related Streptomyces antibiotic regulatory protein (SARP) family of transcription factors, which includes DnrI and AfsR, among others. Members of this family contain an N-terminal DNA-binding domain, followed by the BTA domain, and many have diverse domains at the C-terminus. EmbR contains an C-terminal forkhead-associated (FHA) domain, which mediates binding to threonine-phosphorylated sites in a sequence-specific manner. The BTA domain of EmbR contains three Tetratricopeptide repeats (TPRs) and two C-terminal helices. The TPR motif typically contains 34 amino acids, and 5 or 6 tandem repeats of the motif generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein.	9.2184e-32
CP029541.1|AWN26123.1|2119331_2119991_+|DUF4255-domain-containing-protein	gnl|CDD|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	1.635e-48
CP029541.1|AWN26139.1|2145238_2146645_-|hypothetical-protein	gnl|CDD|239109	cd02549, Peptidase_C39A, A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature or have different domain architectures.	9.33072e-29
CP029541.1|AWN26138.1|2143979_2145134_+|alanine-dehydrogenase	gnl|CDD|240658	cd12181, ceo_syn, N(5)-(carboxyethyl)ornithine synthase. N(5)-(carboxyethyl)ornithine synthase (ceo_syn) catalyzes the NADP-dependent conversion of N5-(L-1-carboxyethyl)-L-ornithine to L-ornithine + pyruvate. Ornithine plays a key role in the urea cycle, which in mammals is used in arginine biosynthesis, and is a precursor in polyamine synthesis. ceo_syn is related to the NAD-dependent L-alanine dehydrogenases. Like formate dehydrogenase and related enzymes, ceo_syn is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. These ceo_syn proteins have a partially conserved NAD-binding motif and active site residues that are characteristic of related enzymes such as Saccharopine Dehydrogenase.	3.46099e-152
CP029541.1|AWN26131.1|2136139_2136577_+|phage-tail-protein	gnl|CDD|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	1.05705e-36
CP029541.1|AWN26137.1|2142354_2143677_+|hypothetical-protein	gnl|CDD|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	8.0065e-12
CP029541.1|AWN26127.1|2129900_2131478_+|phage-tail-protein	gnl|CDD|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	1.59162e-57
CP029541.1|AWN31960.1|2128189_2129815_+|hypothetical-protein	gnl|CDD|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	6.78922e-34
CP029541.1|AWN26132.1|2136578_2137358_+|LysM-domain-containing-protein	gnl|CDD|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	9.0347e-07
CP029541.1|AWN26122.1|2118469_2119171_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.26734e-23
CP029541.1|AWN26130.1|2133389_2134022_-|hypothetical-protein	gnl|CDD|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	0.000309321
CP029541.1|AWN31959.1|2120017_2122087_+|AAA-family-ATPase	gnl|CDD|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	6.01859e-25
CP029541.1|AWN26134.1|2139339_2139780_+|baseplate-protein	gnl|CDD|377431	pfam04965, GPW_gp25, Gene 25-like lysozyme. This family includes the phage protein Gene 25 from T4 which is a structural component of the outer wedge of the baseplate that has acidic lysozyme activity. The family also includes relatives from bacteria that are also presumably lysozymes.	2.55572e-32
CP029541.1|AWN26128.1|2131553_2131997_+|phage-tail-protein	gnl|CDD|274049	TIGR02241, hypothetical_protein_SCD8A.25c, conserved hypothetical phage tail region protein. This family consists of uncharacterized proteins. All members so far represent bacterial genes found in apparent phage or otherwisely laterally transferred regions of the chromosome. Tentatively identified neighboring proteins tend to be phage tail region proteins. In some species, including Photorhabdus luminescens TTO1, several members of this family may be encoded near each other.	1.54767e-42
CP029541.1|AWN26133.1|2137374_2139294_+|type-IV-secretion-protein-Rhs	gnl|CDD|226032	COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown].	1.50872e-20

Protein sequences

>CP029541.1|AWN26129.1|2131996_2132410_+|hypothetical-protein
MRRDGPAGAQQQREPLRTEFEFELPRGFVDESGTVHRNGAMRLATARDELIPLRDVRVRENPAYLSVVLLGRVITRLGTLASVHDGTVENMFASDLAFLQDFYRQINAEGHTRAAVSCPHCEEPFEVELAGSRLGES
>CP029541.1|AWN26128.1|2131553_2131997_+|phage-tail-protein
MSLQPGDALTSHNFGLQIDGVMVEYLQEVSGLTMEQDVIEYQQVSADGKPVVKKMPGTKKAGECTVTRGMTQSGAFSEWINKSIAGDMGSARKNATIMMMDYQNNPVKRYNMRNAWCSKVETSGVKAGDTAALTEQVTIVFEELVIE
>CP029541.1|AWN26127.1|2129900_2131478_+|phage-tail-protein
MPTYLSPGVYVEEVASGSRPIEGVGTSVAAFVGLAPTGPLNEPTLVTNWSQYVAAFGEFTDGYYLAHSVYGFFNNGGTAAYVVRVGGTGEGEPQAAAAPQTPRALTAGEPTALGAFKVSAIAAGSANSGALTVEVQDVEGEGSADRFKLVVRDGDKVVESFDVSAKKSSRNYVVAQVKQRSKAIAIEEAVPAAQVTKPDAQAVTLAPPAPAPAAPAGSGAVEQLASGQFIGDSADRTGFGGLEALDEVNMVAVPDLMAAYQQGLIDLEQVKAVQLGLISHCELMGDRMAILDPPPALNARDIRKWRQEIAGYDSRYAALYYPWIKAFDPASGQTRIIPPSGHMAGVWARNDSERGVHKAPANEIVRGAIDLELQITRGEQDLLNPVGVNCIRAFPGRGIRVWGARTMASDPAWRYLNVRRYFNYLEESILIGTQWVVFEPNDQALWARIRRNISAFLVNEWRSGALFGQRPEDAFYVKCDAETNPVESVDVGRVVCEIGIAPVKPAEFVVFRLAQFSGGGGELEE
>CP029541.1|AWN31960.1|2128189_2129815_+|hypothetical-protein
MAAAGEAERLTPEAAAVLQRTVGNAAFSALLAGQEQHRHGAGCGHTGPSTVQRSPVQEVLRAPGRPLDEPVRTDMETRLGADFSDVRVHTDASAHESAESVDAHAYTSGSHIVFQRGRYNTSSAAGRHMLAHELTHVIQQRNGPVAGTDRGDGTRVSDPSDRFEREAEATASRVLSADVQRTADPAHAPDHGSADGHRPVQRTFKMANKTVKAAEDVLPLDALMAKGKARHARWDDAFKKEVRDEIIKMASDERDLGRWPSYEELLDSAERRVREAAAANLPPVVPTAIKTGASNPDHMEVDLPQADQIHRLAEVRRRLSSRGTKQDLDRFRNRQKMVNPFTHKPTGNSYSIGHTGNFVLGGPQEGEYDALFARAGNSTGLSDKELAKHFIRALTEPGYDFDGMSEDGRKYCAKIVAIIQGAEFRRAAANPTVAIAAFNQVVSGSAGTLHEALTKYAVFAKAKGNSATGGSKDSQFHRDAEVDQEDGDFKERALNEYQALTQLVSANGFDPNDAEEFYKGCDKIAATSMSSFTFTFEYAMP
>CP029541.1|AWN26126.1|2126763_2127966_+|hypothetical-protein
MHAHERRATGGESAPRTAPRGPERPRTPAAALSTHPPDALRTLQRAAGNAAVARALTPAAEGARGPLHLQRYAEGEAALGFDKVSAHGGIAIRGRHEAYADADMITAAAHSLDAQDQVPITLERGAAVRAGERTLYRVLPVYKDAARAAAAVRAAGRNPEAAGHEPVAGDSAAQRGDKRAAYLRSLTDPPEVRQLVALTRRIVTALQARAEPRSSTVDGLRSEAMKLAVATMGGGWVAARFPYPERTGREGLTDLAVIMPSLTSDFLAGLPAVENQEAQVQELLITLPNDCKAAAAQLIGTPPDGGLSVRRDAPAVGENHFVDLTGAAADGWANHFAAVILRDGPDSLTYETAADRTSALQQGKSLGYFELYGRAGTGQSFDQVIGAKNQAYASRSAPTA
>CP029541.1|AWN26125.1|2123532_2126430_-|AfsR-family-transcriptional-regulator
MRGGADVLKGAEGVGSPDRGDRLRFQLLGPVRAWRGDRPLNPGPPQQRAVLAVLLMHAGRPVSVPQLVDALWGEQPPPRAVGTLRTYVSRLRGLLEPDRRPRQQAHLLVSSGGGYALRVPGEALDASVFEERLATARRLREADDTAGAYEQLRGALALPAGMALAGLPGPYAQRQRDRLTELCVTAQEELFDCVVELGGQAGAIAGLRAFAAEHPLRERTQALLMRALHRAGRQAEALAVYAAARRTLDAELGAEPGRELRALYEEVCARSSGSGPGARPGPGTGPLGDRARPDRDRTGDSRDHRPRPPRPARNPSRIGPPPPVPAQLPPDIADFAGRAEAVAQLAPALRGAAGARAPVVATLSGLGGVGKTALAVHVAHSVRAHFPDGQLYVDLQGSGLAPEDSSAVLTHFLRVLGVAESAVPDGPAQKAALYRSLLADREVLVLLDNARNSAQVRPLLPGAPGCAVLVTSRARTLALPGADRVDVEVMAEGEALGLLGAIVGAERVAAEPIAARELVAVCDGLPLAVRIAAARLTSRPGRAMADLVARLSEERRLDELRVGDLGVEATFRVGYEVLGPGLAHAFRALALCGMPSFCRGAAAALLDTTDDEAEEAVETLVDAGLVELHGEDRYRYHDLVGLFARRLGERHDSPCERAAAQHRFFDYVLATVLTAVRLIEPHRVLPGLLRHPDSPGRTLADADAARAWLHDAHPRLYAAVEWALGAAPGLLGSAVDLLTAWSQVLGGTARHRALEPLVRRAVDTARRHGDDTATAHALRLLRVPHYGTAPHHGTAPHHGTGTYAWAERAPGESLRPADASAGPPVSALAERELAVVPVTTDQERAAPPLRTAAPDGSEYRLRQIRYRARCALRRDGPPRQAAAPFRQARRRCRLRAARDRARLGPGESERGPPLPTPAPPPGRGCGCGSANMGNAAVGRPPQPCRGAARCRKDIPLCPRLCPYAR
>CP029541.1|AWN26124.1|2122138_2123494_-|hypothetical-protein
MWTSLEPAAITVDPGSNARVRLRVRNTGDTVEEYRLRPAGAVAGWTRVEPDVLRLYPGAEGTAEVEFAPPRTSDSVAGPTPFGIRVEPAEHPEIRDVVEGQVTVGPFTELRCELVPLSVRGRWRAKASVAVDNLGNQPLTVSLSGRENGDALTVEPEPTSVQVAPGRAAFVGLNIRPGAVSWVGGLNKHPFTVSVQRAGVPEPTELRGTYLQPSVLPRWAMAVLSLLLVAALAFVALWFRAVPKVSTSAREKPGQSQKLPEKEKPSEPAPSKPPEEEKPEEKPEEQPPEEPADDGAGEPEGPTEQTIRSNANGGWYLQTNGGSQEDGTQIGQSPEWTGDQFGRNQWWTIHHYPEDNTVALESASSPGSVAQLKENTNQVELWAADPEQLTSGKLPPQQKWRLMDVGDGRTRIVNMRNDECLTDLQNDKGALSWKCTDGPDARQDWKIAEGQ
>CP029541.1|AWN31959.1|2120017_2122087_+|AAA-family-ATPase
MSGATVTENAGGALRGRLAGLRERVAGLVERRTADDPTAADPLRGLYVTPESARRLAAQAPAEGTGAPYTAGGAPTGGPADEAPGPSDRSVALAGRFGLSALDLQILLAALAPDVDRSFEPLYGYLNDDVGRRRATVALALDLAGTGPYEAGARARFHPGAPLLSGGLLVIEDEDRPLPGRALRVPERVVAHLLGDEGLDPELSGGEVELLSAGQRAAGVTGSAARTDDTSFAGRLAVLASERPLAVHLRERRPGTAAEPVTDGLRRAGLPVLRYRPDGHHGDGTGLAGALLREARLRGAAVVVGPLPERPGALVRALAGGDVPVVFFGSEPYDPDWAPDSGLFALDAPDDGAAADEVWSTELGSVDEGFDLAAAVAPYRLGAAQIRRAARAANALAAFDGTPVTAAHVQHSARQQSAPLLDRHARRVRPAVGFDGLVLPPEPLSMLHELVQRARHREKVLGTWRLRTGGGRGRGVVALFAGESGTGKTLSAEVVAGALGLDLYVVELSSVVDKYIGETEKNLERIFSEADRTDAVLLFDEADAVFGKRSEVKSSHDRYANLESAYLLQRLEAFDGIAVLTTNLRANIDEAFTRRLDLVVDFPFPDDGQRLALWRSCLAATPCADDLGLDVCAKEFELSGGAIRSAAVTAGYLAAGRGGPVTAADVRAGARREYRKMGRLVPDASPLWD
>CP029541.1|AWN26123.1|2119331_2119991_+|DUF4255-domain-containing-protein
MIHEVDEAMRSVLRGGVLPDGAGDVAFEAPTRDWAARRNAPTLNAYLYDIREDVARRERGAIAERDARGVIVRRRQPPRWFRLSYLVTAWTTRPEDEHRLLSAALGCLLSHEILPAAALPQALRALEVSIPLTVAVPPPESRSIADIWSALGGELKPSLDVVITVPFPVSPSYEVAPPVTEGAVTVVRGLDGVPGDSAPRMLRSAPGASPSAKDSEGGQ
>CP029541.1|AWN26122.1|2118469_2119171_+|helix-turn-helix-transcriptional-regulator
MLDTRVTVTVHASDPLSRAGVVSHLQHQPAVEIVQNQGGAAARERAEQAERGREKEGGGQAVGAVAIMPIDRFDEIAATELRRLVRGGEQRVVLIARDLREPELMTIVEYGVRAILWRHQATPQRLLRAVQNAARGEGDLPPDLISTLLTQVGRLRRSVTTSASVGIAPTLGMAQREVDVLRLVAEGLDTRQISEKLAYSERTVKNVLHALMTRLQLHNRAHAVAYALREGYI
>CP029541.1|AWN26130.1|2133389_2134022_-|hypothetical-protein
MASGAVVAAGAVVAAGAGAGASARCKGVLVGEGAVSLLPGCDEVAGRSRRGGIGTLPAEVSGDRPPTAFRTGMGIATGMAEGWLVGRTPRDAERAASTPPPGTASAPGTVVTPAVALPPGPPVPPPPAPPALPAPPDAVSVTADLGCPPRRAPDGSEDGVTGRAADGVTDGPADGPAAEATGGVPGDMADAALGASFRGGADDVSLPEAG
>CP029541.1|AWN26131.1|2136139_2136577_+|phage-tail-protein
MPQAQDPGSTVFFKLTIDGQDLGLFNGCDGLASEVEVEQRQEGGNNGFVWQLPTRVTFSTIRLTRPLTADTSRVAAWISSLATGISRPTAQIAALRADGSVVAQWGLVEVLPVRWQGPSLDPSSPGVATETLEIAHHGFTDAGGA
>CP029541.1|AWN26132.1|2136578_2137358_+|LysM-domain-containing-protein
MAAPTGGKAGASLVRAALAIHQPPTDLGGSMGGRMGEVEFQFNPTQLQLGREAEWHTQTAVAYTRGAPPKFTGTRPATLQLEVFLDASGTPNSGKVQKQIELLLSCCEVTAQSVNSKRPSPPWVRFSWGSFNTVQFVAYVTSVSATYTLFNPTGEPIRATCTLSLTEVAMPTKGQNPTSGALSARRIHRTVAGDSLASLAWREYGDATRWRLIAEANAIDDPMRLRPGTELLLPAADEDPPEGRPPSLPPQPTTHEAAR
>CP029541.1|AWN26133.1|2137374_2139294_+|type-IV-secretion-protein-Rhs
MSEKTYTSVLYAEIGGTPLPDKLATLLIEGWVDASVNVPSAFQLTFSDTGSDILKTFPQIKVGAKAVLSPFTDGRRGTPMLTGEITALEVDADASGKYLVVRGYDPGHRLLRNRRVAGYPNMTASDIVRRLAGLNKLSLGKVEPTRTVYELATQPNITDWDFLLRLAQENDVHLSFDPKGKLQFGKLSPASSAPAGSTPAAQSPYVLEFGHNAMHSRIAVTAAGQVDRAGARGWDMRAKRALSAQSPATTSKDIVADITPGQLSKPFGKAELTATDTPFTTQAQVTHAARALADDAAGSFAELEVAVTGNPDLKPGQPVALKGAGFPFEGKYTATGVRHVFESGRPFTTWLTVSGRQFRSLYGLASGGADPAPPMPGVAMALVSNAKDPLRLGRVRLRFPWLSDTYESDWCRVAQLGGVRGGGLVLPEVGDEVLCAFDRGSLEHPYVLAGLYNGRDKPPREPDGLPAIDPTSGRVNWRSFASRSGHIVELLDAKTRMKSGIRLQTGNGRMTVHMDEARTSVTIRSDGSVSITGTRNVSIKAGGNLSLTAGGSLTMSAGGAVDIKAGAKFGVMAGAVADINATGAISLKSAGAVAVNSVGAVSVSAVGAVAVNAGAAAAINSPATVTLNAPAVLRNGIPF
>CP029541.1|AWN26134.1|2139339_2139780_+|baseplate-protein
MSEQFVGAGWSFPLRTDAGGGIALARREREIEESIRLVLATAPGERPMRPEFGCAVHDMVFAPVNEATAGRIRYEVRSSLDRWEPRIEVQDVEVSPAPDDPSVLFIDVRYSVRGTNNPRSLVFPFYVIPSTESPSTASAASTESEA
>CP029541.1|AWN26135.1|2139779_2141798_+|putative-baseplate-assembly-protein
MALPAPHLDDRRFQQFVDDAKRYIQQRCPEWTDHNVSDPGVTLIEAVAHMADQIVYRLNRVPEKNHLAFLDLLGVTLFPPSAARANVTFWLSAPQPEPVVLPAGTEVATGRTETEEAVVFATEDDLTVVPCELSAVLRQEAGTTPEDCGQDVFGGRDVAVFAAAPQPGDTLLFGLSAAVPRCVAVLQLDSRVDGVGVDPRQPPLRWEAWTADGWAECEVEEDSTGGLNRPGEVVLHIPAGHLVSRVGRTDAAWLRCRVVEAAPGQPFYSASPTVRSASAFTIGGTTRVAHAVVVQDELLGESAGVPGQRIRLAHAPVVADRPPLRLEVSDGDGWHEWQVVPDFASSGPHDRHITLEEATGEIAFGPSVRQPDGSVRQFGAVPAKGSVIRAAHYRTGGGRSGNVARGAIQALRSSIPYVARVENREAARGGVDGETVQEAKVRAPITLRAQERAVTARDYEELARRAAPEAARIACLAVDPAEPSTATPSTAGASGPEAGQTGRTGENAVRVLVVPQAVPDRGGRLRFEQLVPGEELLGRVTQFLDERRPVGTRLAVGPPFYQGVTVVATLHSFRAARADRVRAEALDALYAYLDPLTGGAHGDGWPFGRPLRSGEIFAALQRVPGVELVDEVLLHPADPLTGRRGDATDRIELARSALLFPFDHRVRVIEAR
>CP029541.1|AWN26136.1|2141794_2142352_+|phage-tail-protein
MRGTPAGMVSPHPLGGQLPAVYADDDFVQRFVEGLDVVLAPLFNVLDCLESYFTPALAPEDFVDWLTTWVGTELDGTEPLATRRRAVATAISLHRVRGTRRGLSDAVQLAFGVRPEIIESGGATWSRRPLGTFPGSPHPGLRVTLRVHDPAAVDPHRLHAVVAAARPAHLPFAAEVTHLPTPEGT
>CP029541.1|AWN26137.1|2142354_2143677_+|hypothetical-protein
MPSDHTTCPDCGSPAPQTDQSFCDSCGAFLRWDRPAPKPSTTDPDRTAAAPPTPPASAPAPSPPAHPAQPDTTPPPPPAAPAPAPAPATGDGTRPAAAPQQDAGAAPTTPLPSAAANDGDGRNGRNVGQSPSGPDSQGGQHGQHGQDGPTAPRPAGESGVSETGIRALLVPVPGASPTPPPEAPGGVLPGRPEAARPRVRTPHPAPEPEHGAPCRSCGALNAAGRHFCRSCANPLTDTAPETAEGPYAGQRPRLNRDRGRWITRAVVAAVIVAVVAGGIIGGPPAAQAVQDHFAKRVPVPAALWKAPHSGPGQDAKLAFDTYSNTWWGTGYSGNSDGQYLEAGFSQPTDLLNVVITPGVSARTPQAADPARPREFDLIVTDSAGKKHISHPRINDGGAQSIDVAVRNAMTVRLVLRTAYGATEEKQVAIAELEFFGRSAG
>CP029541.1|AWN26138.1|2143979_2145134_+|alanine-dehydrogenase
MQQLKLGIMSQTRKENEHRLPIHPAHFARIDADLQPSIYLQTGYGEQFGVPDSQLAPLVAGFRSRQELIAECDVILLAKPLHEDLTELRDGQVLWGWPHCVQDAKVTQAAIDRRLTVIAFEAMNHWTREGSFNLHVFHKNNELAGYSSVLHAMQLTGATGDYGRRRRAVVIGFGATARGAVTALSALGVHEVDVLTARGVTAVSSPIHSARIVHFDHDVANGTLDPRRSIALTEDGPEPLAEFLARHDIIVNCVLQDTEAPLMFLIKEDLPKLAPGTLVIDVSCDEGMGFAWARPTTFNDPMFTVGNHVHHYGVDHSPSYLWDAATWENSEALIPFLRPVLEGPAGWDGDTTIHRAIEIRSGTIQNPAVLAFQNRAEQYPHALL
>CP029541.1|AWN26139.1|2145238_2146645_-|hypothetical-protein
MTSSAPRRTVLAAALAAAAGVAAPSAQAVDASRRPAAGTAAPATATTPDAPARRSKSLVDYHAWTTTSDWTKGHAKGTVLAPGARPGIRLARPAGTSDYKDPHTGKTTRWEYATWTSPVHRLGTPATEVVASWNAHTPPGTWISVELRGTYTDGGRTPWYVMGRWTSGDGATDIRRTSVDDQKDGKSSVSTDTFAIDNPASGLRLASYELRVTLYRKPGGTLTPTVWRLGAMGSDLPDRFEVPASAPGRVGRELVVPRYSQEIHKGQYPEYDNGGEAWCSPTSSQMIVEYWGRKPTQQQLSWVNPDYADPQVCHAARHTFDYQYEGCGNWPFNAAYAATYRDLQGVVTRLSSLTDVERLIHAGIPVITSQSFLKTELDGAGYGTPGHLMTVVGFTEAGDIIANDPAAPDNAAVRRVYKRRQFENIWLRTKRKNAEGKVVGGSGGVCYLYFPARPSAVQRRALAEVGVR

Crispr_ID: CP029541_4

• CRISPR_ID: CP029541_4
• CRISPR_location: 2618569-2618665
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_4

Consensus_repeat	Method
TCTTGCGTTTCCGACTCTATCAGATCC	CRISPRCasFinder

spacers of CP029541_4

>4.1|2618596|43|CP029541|CRISPRCasFinder
TTGCGGGCCCGATTTTCGCCGGTGCGTTTCCGCCTTTCGGCTT

CRISPR arrays and Neighbor proteins around CP029541_4

CRISPR arrays

The CRISPR arrays of CP029541_4

>merge|CP029541|4|2618569-2618665|CRISPRCasFinder
TCTTGCGTTTCCGACTCTATCAGATCCTTGCGGGCCCGATTTTCGCCGGTGCGTTTCCGCCTTTCGGCTTCTTCGCGTTTCCGACTCTATCAGATCC

>CP029541|4|4|2618569-2618665|CRISPRCasFinder
TCTTGCGTTTCCGACTCTATCAGATCC	TTGCGGGCCCGATTTTCGCCGGTGCGTTTCCGCCTTTCGGCTT
CTTCGCGTTTCCGACTCTATCAGATCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN26524.1|2604176_2605442_+|DUF1015-domain-containing-protein	unknown	unknown	gnl|CDD|377633
CP029541.1|AWN26526.1|2608483_2609053_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379237
CP029541.1|AWN26525.1|2607167_2608487_+|alcaligin-biosynthesis-protein	unknown	unknown	gnl|CDD|226017
CP029541.1|AWN26528.1|2610954_2612991_-|hypothetical-protein	unknown	unknown	gnl|CDD|237171
CP029541.1|AWN26530.1|2619749_2620532_+|sporulation-protein	unknown	unknown	gnl|CDD|369195
CP029541.1|AWN31986.1|2605603_2607133_+|pyridoxal-dependent-decarboxylase	unknown	unknown	gnl|CDD|99743
CP029541.1|AWN26532.1|2621505_2622009_+|HNH-endonuclease	unknown	unknown	gnl|CDD|224321
CP029541.1|AWN26533.1|2622911_2623847_-|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl|CDD|223407
CP029541.1|AWN31987.1|2622060_2622828_-|hypothetical-protein	unknown	unknown	gnl|CDD|376667
CP029541.1|AWN26537.1|2626314_2626560_-|chaplin	unknown	unknown	gnl|CDD|367652
CP029541.1|AWN26531.1|2620574_2621114_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl|CDD|182092
CP029541.1|AWN26534.1|2623948_2624362_-|NfeD-family-protein	unknown	unknown	gnl|CDD|224501
CP029541.1|AWN26535.1|2624490_2625303_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224044
CP029541.1|AWN26527.1|2609049_2610867_+|IucA/IucC-family-protein	unknown	unknown	gnl|CDD|226715
CP029541.1|AWN26522.1|2602064_2602955_+|NADPH-dependent-ferric-siderophore-reductase	unknown	unknown	gnl|CDD|99790
CP029541.1|AWN26520.1|2599672_2600677_-|iron-ABC-transporter-permease	unknown	unknown	gnl|CDD|182464
CP029541.1|AWN26523.1|2602980_2604006_-|HAD-family-hydrolase	unknown	unknown	gnl|CDD|319832
CP029541.1|AWN26529.1|2618930_2619581_-|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl|CDD|376746
CP029541.1|AWN26521.1|2600784_2601813_+|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|223687
CP029541.1|AWN26536.1|2625393_2626209_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN26524.1|2604176_2605442_+|DUF1015-domain-containing-protein	gnl|CDD|377633	pfam06245, DUF1015, Protein of unknown function (DUF1015). Family of proteins with unknown function found in archaea and bacteria.	5.28562e-115
CP029541.1|AWN26526.1|2608483_2609053_+|GNAT-family-N-acetyltransferase	gnl|CDD|379237	pfam13523, Acetyltransf_8, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.03779e-55
CP029541.1|AWN26525.1|2607167_2608487_+|alcaligin-biosynthesis-protein	gnl|CDD|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	0
CP029541.1|AWN26528.1|2610954_2612991_-|hypothetical-protein	gnl|CDD|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	1.69869e-16
CP029541.1|AWN26530.1|2619749_2620532_+|sporulation-protein	gnl|CDD|369195	pfam07070, Spo0M, SpoOM protein. This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH.	3.55839e-111
CP029541.1|AWN31986.1|2605603_2607133_+|pyridoxal-dependent-decarboxylase	gnl|CDD|99743	cd06450, DOPA_deC_like, DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.	2.71713e-120
CP029541.1|AWN26532.1|2621505_2622009_+|HNH-endonuclease	gnl|CDD|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	7.40652e-20
CP029541.1|AWN26533.1|2622911_2623847_-|SPFH/Band-7/PHB-domain-protein	gnl|CDD|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	6.16458e-67
CP029541.1|AWN31987.1|2622060_2622828_-|hypothetical-protein	gnl|CDD|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.31942e-25
CP029541.1|AWN26537.1|2626314_2626560_-|chaplin	gnl|CDD|367652	pfam03777, DUF320, Small secreted domain (DUF320). Small domain found in a family of secreted streptomyces proteins. It occurs singly or as a pair. Many of the domains have two cysteines that may form a disulphide bridge.	9.04634e-14
CP029541.1|AWN26531.1|2620574_2621114_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl|CDD|182092	PRK09818, PRK09818, kinase inhibitor.	2.53274e-59
CP029541.1|AWN26534.1|2623948_2624362_-|NfeD-family-protein	gnl|CDD|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	1.4207e-14
CP029541.1|AWN26535.1|2624490_2625303_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	4.60578e-94
CP029541.1|AWN26527.1|2609049_2610867_+|IucA/IucC-family-protein	gnl|CDD|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	1.52821e-168
CP029541.1|AWN26522.1|2602064_2602955_+|NADPH-dependent-ferric-siderophore-reductase	gnl|CDD|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	8.57846e-81
CP029541.1|AWN26520.1|2599672_2600677_-|iron-ABC-transporter-permease	gnl|CDD|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.25275e-95
CP029541.1|AWN26523.1|2602980_2604006_-|HAD-family-hydrolase	gnl|CDD|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.17355e-102
CP029541.1|AWN26529.1|2618930_2619581_-|DNA-3-methyladenine-glycosylase	gnl|CDD|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	1.42424e-88
CP029541.1|AWN26521.1|2600784_2601813_+|ABC-transporter-substrate-binding-protein	gnl|CDD|223687	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism].	9.65805e-23

Protein sequences

>CP029541.1|AWN26528.1|2610954_2612991_-|hypothetical-protein
MSTNSSDDRSERRPQRRDDGDRGGFRRDDRGPRGDNRGGDRGGFRRDDRPSGGDRGGYRGGDRGGFRRDDRPAGGDRGGFRGGDRRDDRGGDRGGFRRDDRGPRRDDERGGGFRREERGGDRPGFRRDDRPSRPSGGDRGGDRGGFRRDDRPSGGDRGGYRGGDRRDDRGGDRRDDRGGFRRDDRPSGGDRGGFRRDDRPSGGDRGGYRGGDRRDDRGSDRGGFRRDDRPSGGDRGGYRGGDRRDDRGGDRGGFRRDDRPSGGDRGGYRGGDRRDDRGGDRRDDRGGFRRDDRGPRRDDERGGGFRREERGGDRPGFRRDDRPSRPSGGDRGGDRGGFRRDDRPSGGDRGGYRGGDRRDERGGDRRDDRGGDRGGFRRDDRGPRRDDRGGFRRDDERGGRRPYGGGRGRDDRRDDRRDDRRDRDREPIKRLPIPEDVTGDEIDKDVRQELLSLPKTLAEDVAKNLVMVAKLLDEDPEQAYGYSRVALRLASRVAAVREAAGFAAYAVGKYSEALAEFRAARRMTGSVELWPVMADCERGLGRPEKAMAMAGEPEVQKLDKAGQVEMRLVAAGARRDMGQADAAVVTLQSPELASSAVHPWTARLRYAYADALLAVGREDEARDWFARALEADQGGTTDASDRLAELDGVEFTDALEEDDELDGAEDDGAQDEADSAKD
>CP029541.1|AWN26527.1|2609049_2610867_+|IucA/IucC-family-protein
MTAPSDGTLPLSARDAVAHLTPGLWARANRLLIRKGLAEFAHERLLTPKRLPQEGHYAIRSDDGTTEYRFAARRRALDHWQIDADSITRHRDDSELPLDALAFFIELRESLGLGDAILPVYLEEISSTLSGTAYKLAAGRTGAAELAKAPFQAIETGMTEGHPCFVANNGRLGFGIHEYHAYAPETAAPLRLIWLAARRDHATFTAGAGLDYDALIRDELPEETRTRFAATLTTLGLDPADYYFFPAHPWQWWNKLSVTFAAEVAQQHLVCLGPGDDDYLAQQSIRTFFNTTDPARHYVKTALSVLNMGFMRGLSASYMEATPAINDWLARLIDADDTFRAARFSIIRERAAIGYHHRQYEAATAKGSPYRKMLAALWRESPVPTLEPGQRLATMASLLHVDHDGGSLAAALIEESGLEPAVWLRRYLDAYLTPVVHAFYAYDLVFMPHGENAILVIEDGAVARVIFKDIAEEIAVLDPDAVLPPTVERVRADVPEDKKLLSVFTDVFDCFFRFLSSTLDDHGILDEDTFWRTVAACVTDYQTANPHLADKFDRYDLFTDEFALSCLNRLQLRNNQEMVDLQDPAGALQLIGTLRNPLAPYAPAS
>CP029541.1|AWN26526.1|2608483_2609053_+|GNAT-family-N-acetyltransferase
MNTPHFTRTDATLGEFSLRPVDPYGDAELLHRWVTHPKAAFWLMQDCDLAAVEKEFARIAADPFHDAFLGLHNGTPAFLMERYDPAHRELVGIHAAEPGDVGMHFLSAPTDTPVHGFTLAVITTVMEMLFDDPATRRVVVEPDERNTAVHALNKAVGFEILRTVSLPSKDAYLSTCTRDQFLATRGDHR
>CP029541.1|AWN26525.1|2607167_2608487_+|alcaligin-biosynthesis-protein
MSAPYDFIAIGLGPFNLGLACLTEPIDGLDGLFLDNKASFDWHPGMMLDSSHLQVPFLADLVTLADPTSPFSFLNYLKESGRMYSFYIRENFYPLRAEFNDYCRWAAGKLASVRFAHQVTTVEYDEREELYTVHAEQLPTGERHTFRARRLVLGTGTPPHIPEACQGLGGDLLHNAGYLDAKAALQAKDSITLIGSGQSAAEIYFDLLQDIDSHGYHLTWATRSPRFFPLEYTKLTLEMTSPEYVDYFHALPPATRDHLNATQKHLYKGIDSALINDIFDLLYQKNLGGPVPTRLLTNTALQQASYDEASGTYTLGLRQEEQGTDFALDTQGLILATGYRYRVPDFLSAVRDRIVWDDAGRYDVARNYSIDTTGQGIFVQNAELHTHGFVTPDLGMAAYRNACIIRELLGREYYPVEKAIAFQEFAAPAGSHHPMELPA
>CP029541.1|AWN31986.1|2605603_2607133_+|pyridoxal-dependent-decarboxylase
MSLLAHSAEDPADNRAYLLNNGTAGRYHSAVTESVTRISAKIAGTTRPFTGITVGGLTPTVSGVDLDAPLHDAAAALDELEEVYLRDAVYFHHPRYLAHLNCPVVIPALVGEAVLSAVNSSLDTWDQSAGGTLIERRLIDWTAERIGLGEAADGIFTSGGSQSNLQAMLLARDEACRRELTRQGATDARLTDVLPRLRILTSECSHFSIRKSATLLGMGAEAVIAVPSDENKRMRTDELAAQLARCERDGLIPMAVVATAGTTDFGSIDPLPEIAGLCAGYGAWMHVDAAYGCGLLVSRRRDLLSGIERADSVTVDYHKSFFQPVSSSAILVRDRATLKHVTYHADYLNPRRMVEQRIPNQVDKSIQTTRRFDALKLWLTLRIMGAQAVGELFDEVIDRAADAWKLLHDDPRFDVVVEPRLSTLVFRYVPTTDQDPELSDRVNLHAREALFASGEAIVASTVVDGRHYLKFTLLNPETTLEDIATVLDLIAEHAGSFLAEQPRPALSAR
>CP029541.1|AWN26524.1|2604176_2605442_+|DUF1015-domain-containing-protein
MTSTDGLRLLPFRGLRYARERVSSLTAVMSPPYDVVVRPDGVRHLETADPYNIVRLILPHAADPTTRHRQAADTLHRWRSEGVLTQDAEPALYVYEQRAGEVLQRGLIGALRLDGPVLPHEGVIPEVVEDRAALMRAAAANFEPLLLSYRGEGTATGATAVIERVVEGEPLLATTTEDGFAHRLWAVTDPADLTAIDDDLSRRQALIADGHHRWATYQRLYEQLPGATAGSPWASGLVLLVDTARYPLQVRAIHRVLPHLPPAKALADLAGAFRARTLPGELSAALEALEETPGTAFVLAGGPDSFHLLDRPDPGLLDRTIRRDRPEVWRQLDATVLHSVLLDEVWHIPDHPSDIGYLHHTGAAVEQAARHGGTAVLMRATSEETVRQLAEHGVTMPRKSTSFGPKPATGLVLRTLDDHEN
>CP029541.1|AWN26523.1|2602980_2604006_-|HAD-family-hydrolase
MDEQVRRQPDGCRHALSEAYDTALLDLDGVVYAGGQAIEHAVASLTRAREGGMHLAYVTNNAARTPQAVADQLSGFGLPTGPDDVITSAQAVARLISEQVPPGARVLAIGGEGLRVALRERGLEPVSSADDDPAAVVQGYDPSLDWERLAEAAYAVQRGVPWFASNTDLTIPKERGIAPGNGALVEVVRIAAGGTPQVAGKPQPPMHRETVLRTGARRPLVIGDRLDTDIEGAYNGEVDSLLVLTGVTTPAELLAAPPQHRPAYVDEDLRGLLTPQPEVTAADGGFRCGGWRAEAAGDTLLVEGEGTPVDGLRALCAAAWTAAGDGSYGADTGKALARIGR
>CP029541.1|AWN26522.1|2602064_2602955_+|NADPH-dependent-ferric-siderophore-reductase
MTTTAAPATAPFRFFDVHVVRARRVSPSVVRITFGGDRLDELASGGRDQRFKLFLPQPHQDRPVFHDMGDSWYTTWRAQDPAERAVMRSYTIREQRHDPREFDVDFALHGAGPGADPLAGGPASRWAAHARPGDRLTVLAPAVEDNGGVDFRPPAGTDWILITGDETALPAIAGILSWLSPGTHAKVWIEIAHEDDRQQLPSFADADITWLVRDGATAARCEPVLDALRSADLPEGTPYAWVAGESGTVKAVRRHLVRERGIDRRAVKFTGYWRRGASEEDLLAELTAGAPASSED
>CP029541.1|AWN26521.1|2600784_2601813_+|ABC-transporter-substrate-binding-protein
MSTSRNVTPSRRGILAAGGAVGIGALLAACGGGKDSGGANGDAKTGPWSFTDDRKEKVSLKSTPQRIVAFTGTAAALHDFGIDDQIVGVFGPTKLKNGKPDPQAGDLDVDKVTIIGNAYNQFNVEKYASLRPDLLVTNMYEPGALWFVPDDSKDKITPLAKSVAITSARVPLLKIIERYADLAKSLGADLGAKKVTDAKARFEKASEALRKAAKSHPVKVLACSGSPDLFYASNPGINADLMYYKSLGVDLIVPDHLDKGGYFESLSWENADKYKADVLLLDNRTATLQPKDLAAKPSWAKLPAVKAGQITPWSSEPRFSYAGAAPLIESLTKAIEGAKKTK
>CP029541.1|AWN26520.1|2599672_2600677_-|iron-ABC-transporter-permease
MTPRRRPLLRSAGLVVSVAVLAVIVVLGIAVGAKQIPLDQVWHGVFHYSGSDTDVVIRDVRFPRTLLGLIVGAALGLAGTVMQALTRNPLADPGVLGINAGASAAVVSAISFFGITSLTGYVWFAFAGAAVVNVAVYVLGGTRGATPVRLALAGTALTAVLIGYINAVNLMDTAALDKMRFWTVGSLASATLQTVTGIAPFLAVGGVLALLIARPLNAIALGDDQARALGARLTRTRVMAMLAVTLLCGGATAACGPIVYVGLMVPHAVRAVTGPDMRWILPYSAVLSPVLLLGADVLGRVVARPGELQVGIVTAVLGGPVFIYLVRRRRMAQL
>CP029541.1|AWN26529.1|2618930_2619581_-|DNA-3-methyladenine-glycosylase
MTDVPERMPLTRDFFDRPVVDVAPDLLGRTLLRNTPDGPITLRLTEVEAYDGETDPGSHAYRGRTARNAAMFGPPGHAYVYFIYGMWFSLNVVCGPEGKASGVLLRAGEILTGAPLAAARRPKARSANELAKGPARLATALDIDRTLDSTDLCTGGDAPLSLLHGEPPAPERVRNGPRTGVGGDGADHPWRYWIADDPTVSPYRRHVPRRRTTTAT
>CP029541.1|AWN26530.1|2619749_2620532_+|sporulation-protein
MGFKKLLASLGAGGASVETVLFEENVVPGGVVQGEVRIQGGSVAQEIQGLSVGLQARVEVESGDEEYKRNVEFTKVQLGGEFTVQPGAAHTVPFGLEIPWETPITTFLGTHLHGMSVGVTTELAIARAVDSGDLDPVNVHPLPAQQAILDAFGRLGFRFKAADLEQGHIRGTRQKLPFYQEIEFHAPQQYRGLNQVELSFVADDREMDVVLEMDKKPGLFSEGSDTYRSFTVGLNDFEGTDWAAYLNQWLAEVGGKRNWL
>CP029541.1|AWN26531.1|2620574_2621114_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MSELKRRPLPHDFHPPVPEFTVLSEEVEPGGTLRPEQVFAEGNRSPQLRWEGAPTGTKSYAVTCYDPDAPTGSGFWHWSLFDIPASVTELPAGAGSGEMKGLPEGAVHVRNDYGTREFGGAAPPPGDGPHRYVFTVYAVDQEKLGPDADASPAVVGFNLRFHTLGRAQLIAEYEIPAAG
>CP029541.1|AWN26532.1|2621505_2622009_+|HNH-endonuclease
MRETLVLNASFEPLSTVSLRRAVVLVMQDKAVVEHAHPGLRIRAASVDLPVPQVIRLSRYVRVPFRQRAPWSRRGVLVRDQHRCAYCGRRATTVDHVVPRSHGGGDTWLNTVASCAEDNHRKADRTPEQAGMALLRRPFEPTPADALLSTLGVSVRDALPEWLAVPA
>CP029541.1|AWN31987.1|2622060_2622828_-|hypothetical-protein
MSIGEAVAVFAAGIGAGTINTIVGSGTLITFPVLLAFGLPPVTANVSNTLGLVPGSLSGAIGYRRELAGQRRRLLRFAAFALIGGLGGAILLLALPSKAFDTIVPALIAVALVLVVAQPKLAARVRARRERNGTTAHPDGGPALLLGLMLASVYGGYFGAAQGVIYVSLMGVLLNEDLQRINALKNVLAAVVNGVAALFFLFVAEFDWTAVALIALGSTLGGQLGAKVGRRLPPTALRAVIVLVGLLAIVQLLLK
>CP029541.1|AWN26533.1|2622911_2623847_-|SPFH/Band-7/PHB-domain-protein
MEPIIIVLIILVVLVFIALIKTIQVIPQASAAIVERFGRYTRTLNAGLNIVVPFIDSIRNRIDLREQVVPFPPQPVITQDNLVVNIDTVIYYQVTDARAATYEVASYIQAIEQLTVTTLRNIIGGMDLERTLTSREEINAALRGVLDEATGKWGIRVNRVELKAIEPPTSIQDSMEKQMRADRDKRAAILQAEGVRQSQILTAEGEKQSSILRAEGEAKAAALRAEGEAQAIRVVFESIHAGDPDQKLLSYQYLQMLPKIAEGDANKLWIVPSEIGDALKGLGGAIGNFNPTGGGSIPKPSSPNREAPPID
>CP029541.1|AWN26534.1|2623948_2624362_-|NfeD-family-protein
MWWLIAAVGLGIPLVVTAMPEFGMLAVGAVAGAVTAGVGGGTVLQFIVFAAVSVALIAVVRPIANRHRGQSPQLASGVDALKGRSATVLERVDGGGGGRIKLAGEVWSARALDGSQVYEPGQQVDVVEIEGATAVVI
>CP029541.1|AWN26535.1|2624490_2625303_-|ABC-transporter-ATP-binding-protein
MGDNALMSDVLELVDVSVVREGRALVDQVSWSVKEGERWVILGPNGAGKTTLLNLASSYLFPSSGSASILGEQLGKVDVFDLRPRIGVAGIALADKLPRSQTVLQTVLTAAYGMTASWQENYDEIDEQRARAFLDRLGMTAYLDRKFGTLSEGERKRTLIARAMMTDPELLLLDEPAAGLDLGGREDLVRRLGRLARDPYAPSMIMVTHHVEEIAPGFTHVLMIRQGKVLAAGPLDLELTSSNLSHCFGLPLIVERNGNDRWTAQGLPLT
>CP029541.1|AWN26536.1|2625393_2626209_+|hypothetical-protein
MLDEPRSGRLAAWGNALLAGLVSPDEAAHRIADDDAVHRVEGLPGEAAPVGLTLALGRLRALGAVGLRVALPVPGHPLGLCGPPEFNARALEAEEAVLASGSGLGLIPETYEAGPEGGTGPDVHVEVVWRCLPVREAPPADVPSLGEAERELAEALQEATGLLSRLDVAGAGPVAQAALAAYRARAEAGRQVLAPGYPPRAVRVLELAQRVGALIGIAQQAGGDGREHGAAVSSSEIAARAEALRPVERTARRAQVAAYNSAVEERERHRG
>CP029541.1|AWN26537.1|2626314_2626560_-|chaplin
MNTAKKAALVLAATGLALGAAAGSAFATSGAQADGKATNAPGIGSGNLAQVPVHVPVNATGNSANVIGALNPTFDNTSSNG

Crispr_ID: CP029541_5

• CRISPR_ID: CP029541_5
• CRISPR_location: 2643909-2644028
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_5

Consensus_repeat	Method
TCTGAACACCACGCAGGAGGCCGGTCGATGAGCC	CRISPRCasFinder

spacers of CP029541_5

>5.1|2643943|52|CP029541|CRISPRCasFinder
GCCACCACGCAACCGGCCGGGGGTCCGGGGGTCGTCCCCCGGGAAGGCACCG

CRISPR arrays and Neighbor proteins around CP029541_5

CRISPR arrays

The CRISPR arrays of CP029541_5

>merge|CP029541|5|2643909-2644028|CRISPRCasFinder
TCTGAACACCACGCAGGAGGCCGGTCGATGAGCCGCCACCACGCAACCGGCCGGGGGTCCGGGGGTCGTCCCCCGGGAAGGCACCGTCTGAACACGACGCAGGAGGCCGGTCGATGAGCC

>CP029541|5|5|2643909-2644028|CRISPRCasFinder
TCTGAACACCACGCAGGAGGCCGGTCGATGAGCC	GCCACCACGCAACCGGCCGGGGGTCCGGGGGTCGTCCCCCGGGAAGGCACCG
TCTGAACACGACGCAGGAGGCCGGTCGATGAGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN26547.1|2639801_2640482_+|FadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225097
CP029541.1|AWN26555.1|2648208_2648454_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN26540.1|2630099_2631266_+|queuosine-biosynthesis-protein	unknown	unknown	gnl|CDD|223879
CP029541.1|AWN26544.1|2637188_2637707_-|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|224973
CP029541.1|AWN26557.1|2649640_2651278_-|cation-acetate-symporter	unknown	unknown	gnl|CDD|271374
CP029541.1|AWN26559.1|2651839_2652037_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN26541.1|2631785_2632547_+|lytic-transglycosylase	unknown	unknown	gnl|CDD|381605
CP029541.1|AWN26553.1|2647102_2647381_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl|CDD|182475
CP029541.1|AWN26549.1|2641420_2642125_-|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl|CDD|187594
CP029541.1|AWN26558.1|2651274_2651619_-|DUF485-domain-containing-protein	unknown	unknown	gnl|CDD|377315
CP029541.1|AWN26548.1|2640644_2641415_-|enoyl-[acyl-carrier-protein]-reductase-FabI	unknown	unknown	gnl|CDD|236124
CP029541.1|AWN26542.1|2632645_2635228_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
CP029541.1|AWN26545.1|2637791_2638004_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN26556.1|2648466_2649456_-|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl|CDD|234672
CP029541.1|AWN31989.1|2654005_2655694_-|TIGR03086-family-protein	unknown	unknown	gnl|CDD|274424
CP029541.1|AWN26560.1|2652348_2653863_+|peptidase-S8	unknown	unknown	gnl|CDD|173799
CP029541.1|AWN26554.1|2647602_2647977_+|DUF3099-domain-containing-protein	unknown	unknown	gnl|CDD|378630
CP029541.1|AWN26546.1|2638336_2639656_-|MFS-transporter	unknown	unknown	gnl|CDD|340897
CP029541.1|AWN26552.1|2645631_2647041_+|tyrosine--tRNA-ligase	unknown	unknown	gnl|CDD|235645
CP029541.1|AWN26543.1|2635779_2637024_+|phosphoserine-phosphatase-SerB	unknown	unknown	gnl|CDD|319803

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN26547.1|2639801_2640482_+|FadR-family-transcriptional-regulator	gnl|CDD|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.58319e-50
CP029541.1|AWN26556.1|2648466_2649456_-|GTP-3',8-cyclase-MoaA	gnl|CDD|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	9.12444e-178
CP029541.1|AWN26540.1|2630099_2631266_+|queuosine-biosynthesis-protein	gnl|CDD|223879	COG0809, QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis].	2.82816e-68
CP029541.1|AWN26544.1|2637188_2637707_-|histidine-phosphatase-family-protein	gnl|CDD|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	3.52305e-50
CP029541.1|AWN26557.1|2649640_2651278_-|cation-acetate-symporter	gnl|CDD|271374	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
CP029541.1|AWN26541.1|2631785_2632547_+|lytic-transglycosylase	gnl|CDD|381605	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains. These tail fiber-like proteins are multi-domain proteins that include a lytic transglycosylase (LT) domain. Members of the LT family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, and the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL). LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	3.16522e-30
CP029541.1|AWN26553.1|2647102_2647381_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl|CDD|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	3.42162e-05
CP029541.1|AWN26549.1|2641420_2642125_-|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl|CDD|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.89804e-123
CP029541.1|AWN26558.1|2651274_2651619_-|DUF485-domain-containing-protein	gnl|CDD|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	5.55671e-32
CP029541.1|AWN26548.1|2640644_2641415_-|enoyl-[acyl-carrier-protein]-reductase-FabI	gnl|CDD|236124	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI.	1.24148e-172
CP029541.1|AWN26542.1|2632645_2635228_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.32225e-74
CP029541.1|AWN26554.1|2647602_2647977_+|DUF3099-domain-containing-protein	gnl|CDD|378630	pfam11298, DUF3099, Protein of unknown function (DUF3099). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	2.46163e-20
CP029541.1|AWN31989.1|2654005_2655694_-|TIGR03086-family-protein	gnl|CDD|274424	TIGR03086, TIGR03086, TIGR03086 family protein. This family, like pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized.	1.08984e-24
CP029541.1|AWN26560.1|2652348_2653863_+|peptidase-S8	gnl|CDD|173799	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.8754e-58
CP029541.1|AWN26546.1|2638336_2639656_-|MFS-transporter	gnl|CDD|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.10271e-118
CP029541.1|AWN26552.1|2645631_2647041_+|tyrosine--tRNA-ligase	gnl|CDD|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	1.33252e-131
CP029541.1|AWN26543.1|2635779_2637024_+|phosphoserine-phosphatase-SerB	gnl|CDD|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.01843e-90

Protein sequences

>CP029541.1|AWN26549.1|2641420_2642125_-|3-oxoacyl-[acyl-carrier-protein]-reductase
MSRSVLVTGGNRGIGLAIARAFAEAGDKVAITYRSGEPPAGFLAVKCDITDNEQVEQAYKEIEEKQGPVEVLVANAGVTRDQLLMRMSEEDFTSVLETNLTGTFRVVKRANRAMLRARKGRVVLISSVVGLMGAPGQANYAASKAGLVGFARSLARELGSRNITVNVVAPGFVDTDMTRVLTDEQRESIVKQVPLARYAQPEEIAASVRFLASDEAAYITGAVIPVDGGLGMGH
>CP029541.1|AWN26548.1|2640644_2641415_-|enoyl-[acyl-carrier-protein]-reductase-FabI
MSGILAGKRILVTGVLTESSIAFQAAKVAQNEGAEVILTGFGRLSLVERIAKRLPKPAPVIELDVTNQEHLDGLADKIREHQGEGARLDGIVHSIAFGPQGAFNFLEAEWSDVGTAVQVSAYSYKSLTMACLPLMEHGGAVVGLTFDAQIAWPKYDWMGVAKAALESTNRYLARDLGPKGIRCNLVSAGPIKSMAAKSIPGFEELADVWNHRAPIGWDLADPEPAGRGVVGLLSDFFPRTTGEIVHVDGGVHMMGA
>CP029541.1|AWN26547.1|2639801_2640482_+|FadR-family-transcriptional-regulator
MPLTSPRRSALADQVIAQLRAQITSGEWPVGSRIPTEPELVEQLGVARNTVREAVRALAHNGLLDIRQGSGTYVVATSELAGVMNRRFAAAEPGHVAELRSALEASAARLAAERRTPQDLRQIDTLLERRERAWESGAAEAFVEADATLHMAIVSASHNEVLAEIYADLGGVLRDFLRADVGEELRPEAHMDHARLVEAIRAGDADRAAAEASAHPFGCRLTVPGP
>CP029541.1|AWN26546.1|2638336_2639656_-|MFS-transporter
MADDDLATLGPAAGPRTTSTGPADGPQQPQPGPGHAAPAAGPAGRWLPRLVIAGLVLAALNLRPAITSLGALLEEVRAGLGMSGTVAGLLTSVPALCFAAFGIAAPRLARRWGPGAIVCAGMAAITVGVVARPYLGGTGGFLAASALALAGIAVSNVLMPVVIKSWFPGRVGSMTGLYSMALALGTSLAAALTVPMAEALGGSWRTGLAVWGALAAVAVLPWLVVVRQRRALAGAAASTAARPPEAPVRITSSPTAWALAVFFGLQATAAYITMGWMPQIFRDAGVSAGTAGVLLAVTMAMGVPLSFVLPRLAARMRHQGPLVVLLGLCGLAGYTGLWLAPAAGAWAWALLMGISNCAFPLALTMIGMRSTSSAGVVKLSAFAQSVGYLISIPGPLLVGTLYQHSGGWGLPIALMAGLMVPQIAVGVLAGRDRRIEDEA
>CP029541.1|AWN26545.1|2637791_2638004_-|hypothetical-protein
MSAAFRRPPAAKASRLRTRLPWWALALPVVSFIALLALVAGSSEASAASARQGLAPLLELLAELLDGGVR
>CP029541.1|AWN26544.1|2637188_2637707_-|histidine-phosphatase-family-protein
MSADTPRRIVLLRHAKAEWSDSSDHERPLADRGRKDAPVAGRWLAGAGITPDLTLCSTSVRTRETWKLAVHELPQRPKTVYEERIYEASLGELIALLNETSDEVNDLMLVGHNPGVHALADALSGEADGDLLPRMNRSGFPTASVAVLTFNGSWKSVEHGVGRLVAYWTPHE
>CP029541.1|AWN26543.1|2635779_2637024_+|phosphoserine-phosphatase-SerB
MSASQIPPATAVTGDDVPTLLVKIFGKDRPGITAGLFDTLAAYSVDVVDIEQVVTRGRITLCALVTAPSPAQGATGSSEGDLRATVHSWAESLNLQAEIISGRGDNRPRGTGRSHVTVLGHPLTAESAAAIAAAITSTGGNIDRIFRLAKYPVTAVEFAVSGAATEALRSVLAPEAAQLGVDVAVVAAGLQRRAQRLVVMDVDSTLIQDEVIELFAAHAGCEAEVAEVTTAAMRGELDFEQSLHARVELLGGLDASVVEAVRKEVRLTPGARTLVRTLKRLGYQVGVVSGGFTQVTDALKEELGLDFASANTLEIVDGKLTGRVTGAIVDRAGKARLLREFAQQAGVPLAQTVAIGDGANDLDMLNAAGLGVAFNAKPVVREAAHTAVNVPFLDTVLYLLGITRDEVEAADTHE
>CP029541.1|AWN26542.1|2632645_2635228_-|ABC-transporter-ATP-binding-protein
MGHGVPELVLELNGRTWTLDPSRSYNVGRDPQGDMVLDDARVSWRHATVRWAGRGWIIEDQGSTNGTYVQGQRIHQMEIGPGSTVHLGNATDGPRVTLSAPAADAFSARPAMAPQQQAAQGWQAPPAHQAPAHQAPAHQAPAHQPPAQQGWQAPPQGQQPPYVPPQQAQPQQQQARPPQERPAQKAGGGPVHGDRSPTTFHRLDSGRVMRIGRALENELVVSDLQVSRHHAEFRATPDGRFEIRDLGSHNGTYVNGQPVAKSGTAVIGPNDIIGVGHSTFRLVGDRLEEFVDTGEVSFSARHLTVTVDGGKQILKDVSFGVPEKSLIAVIGPSGSGKSTLLKALTGYRPANQGDVLYDNRNLYKQFAELRQRIGLVPQDDILHKELTVQKALRYAAKLRFPGDTAESEREARIDEVLRELKLDIHKDKRVTSLSGGQRKRVSVALELLTKPSLIFLDEPTSGLDPGMDRDVMQLLRGLADDGRTVLVVTHSVAELGLCDKLLVMAPGGGVAYFGPPEEALNFFQYDTWADVFSAFENYRDYDWMGRWRGSPHYQMYAADIDAVAPQSVNVQVPPARIQKSQSWGSQLWTLMRRYVSVLASDRGFLGLMLILPAVLGVVSMLIPSDYGLGYGPLNRHRTNRDASTIMLILAVGMCFSGAANSVRELIKERVIYERERATGLSRSAYLMSKVIVLGVVTAIQGVIIAAIGFSTRNMPDEGLLVEKVPAIEMALAIIALGFTSMMFGLIISALVKTAEKTMPLLVMFAIVQVVFTGVLFQLFDTVGVAQFAWLMPSRWAVGAMGATADMNTLLPWEPGNPDPLWKHQTGVYVMDMIILITLGIALAFVVARLLRRHEPEVMRK
>CP029541.1|AWN26541.1|2631785_2632547_+|lytic-transglycosylase
MPQHATSGLHRLTRTHKLSAAGVAAAGAAALVFSLVPGGDAGQGKSQATAVENVKPVAFSAVDTAAKTQQATISQQADASAAKGKAEAAAAKKAAAEKAAKAKAAAAAKAKAEKARAAKAAANRSEVRTAIPAAAPKPAAKPAAKVYPDNLDGWIRESLDIMAKKGIPGSYEGIHRNIMRESSGNPMAINNWDINAINGTPSKGLLQVIQPTFNAYHVEGTSWNLYDPVANITAACNYAADRYGSMDNVNSAY
>CP029541.1|AWN26540.1|2630099_2631266_+|queuosine-biosynthesis-protein
MIADLLQVPDELSARVPAEQRGPGLGRDAVRLLVSRGAAEVGHHAFGDLPDLLAAGDVLVVNTSRTLPAAVDGRVGDGRGRGEPVVVHFSTRADRWHPAGRAVAGRWAVAGRWAVELRSPDGHGSTRPRAGGPAGTVVRLPDGARLVLEGPVDPGSVRLWWARVTGARVAELMRRHGRPLRYGYTDRDQPLATYQTVFAVDAPGGGSAEMPSAARPFTPELVARLVSKGVQFAPVALHTGVASAEAFEPPHPERFVVPPVTAWLVNAARARRRAAARQQRAAGSAPSGRIVAVGTTAVRALESAADADGRVRAAAGWTDLMVTPERGVRAVDGLLTGLHEPTASHLLMLEAVASVTADGEALRRAYAAAVRGRYLWHEFGDLHLVLPD
>CP029541.1|AWN26552.1|2645631_2647041_+|tyrosine--tRNA-ligase
MTRLGESVARATTLLSADLSSDATVQELLKETGARRYLDLTDLPAKEQAELIAARTVEVLPGVEKLAERIEERRAAGKGLHIKLGIDPTATDVHLGHAVPLIILSRFQRLGHDVTLIIGDFTAKIGDPSGRTAERPPLTDEDIAQNLATYREQVRPFFDFEKVSFRQNSEWLAPYTFPELLSLLAQVPASQLLQREDFRNRLAAGSGLTMTELLYPIAQGLDSVALECDVELGGSDQLLNLQMGRKLMELRGQRPQLVVTMPLIEGTDGTGAKMSKSKGNYVGLSAPADDVFGKIMSVPDRLMEPYLKAWTEWTDEEIALVLGRVADRSLHPMDLKKVLAGEVVAALYGMDAAMAARAGFVAQFSKKSFADVESLPSVDVAAHGAETVAAVLTTVLEFTPSASAARRLAKQNALRLVVEAEGEGKQQTVVLAEADAARPLGEVLAEKLADSPGVAYLKAGRKLGRLDGR
>CP029541.1|AWN26553.1|2647102_2647381_-|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MTWLWAIIVGLVLGLIAKAIIPGKQQIPLWLTVIFGMLGSVLGNWAATGIGVNETGGIDWIRHLLQLAGAVLVVGIGDRLWVSMRGRKKQAT
>CP029541.1|AWN26554.1|2647602_2647977_+|DUF3099-domain-containing-protein
MRKQSSGETFRITGARQGLSEDVRGRQRRYVISMAVRTVAVVLTVVLWNIERPVAIATLVLGLALPYIAVVIANAGRENAPSLPKTFVAGPTRPMLTPGASDAPSESVPERPAAGASAPEHDPS
>CP029541.1|AWN26555.1|2648208_2648454_+|hypothetical-protein
MNSPNPQDSADSAVICSAKGCRAAAVWVLAWNNPKLHTPDRRKTWLACEEHREHLSQFLGVRGFLKDVVTLEDWEASAAGR
>CP029541.1|AWN26556.1|2648466_2649456_-|GTP-3',8-cyclase-MoaA
MLIDTYGRVATDLRVSLTDRCNLRCTYCMPEEGLQWLAKPDLLTDDEIVRLITIAVRDLGIDEVRFTGGEPLLRPGLPGIVERVAALTPRPQMSLTTNGIGLERTATALRDAGLDRVNVSLDTLRPEVFQAMTRRKRHGDVLRGLEAARAAGLTPVKVNTVLMPGLNDDEAPDLLAWAIDHDYELRFIEQMPLDAQHGWKRDGMITAGDILASLRTRFALTPEGQDERGSAPAERWIVDGGPHRVGVIASVTRPFCRACDRTRLTADGQVRTCLFATEETDLRTALRSEAPDDEIARIWKVAMWGKKAGSGLDDPSFLQPERPMSAIGG
>CP029541.1|AWN26557.1|2649640_2651278_-|cation-acetate-symporter
MNLTQQPLVQQLAAGGAGEHRALIITLFAAFVAATLAITVWAGRQTKGAEDFYAGGRQFTGFQNGLAISGDYMSAASFLGIAGAIALFGYDGFLYSIGFLVAWLVALLLVAEPLRNSGRFTMGDVLAYRMRQRPVRTAAGTSTIVVSIFYLLAQMAGAGALVTLLLGITSEAGKILVVVLVGIVMILYVTIGGMKGTTWVQMVKAVLLIAGTLLITFLVALKFNFNLSSLLGAAAENSGKGAAFLEPGLKYGVSATSKIDFISLGLALVLGTAGLPHILIRFYTVPTAKAARKSVNWAIGIIGVFYLMTIALGFGAAALIKPETITASNKAGNTAAPLLAEAIGGGAGSTGGAILLAVISAVAFATILAVVAGLTLASSSSFAHDLYVNVFRKGKATEKEEVGAARWATVGIGAAAIVLGVFARGLNVAGLVALAFAVAASANLPTILYSLFWKRFTTQGALWSIYGGLASSVFLVLFSPVVSGKETSMFPAADFAFFPLENPGLISIPLGFLLGWLGSLLSKEEPDAQKYAELEVRSLTGTGAH
>CP029541.1|AWN26558.1|2651274_2651619_-|DUF485-domain-containing-protein
MSAAPTLDPGTHEPPDYLQVQSSAEFDELRRAHRSFAFPLTVAFILWYLGYVLLSSYAGGFMAIKVVGHLNVAFVLGIAQFVTTFLIAWWYSRHAAAKLDPKAEAIKSRLEGDA
>CP029541.1|AWN26559.1|2651839_2652037_+|hypothetical-protein
MNPPPQQAPQPPAPRRRPYGSVRLPAPLTVAPSEPRPGTTTAARRWYGPRISLPPLSITTLRRNG
>CP029541.1|AWN26560.1|2652348_2653863_+|peptidase-S8
MAHPRSRRMRALAVPLGLALTASLGFLPHAATAAPQDSAPAAAASADGPLLSYVVNTTPGHTTVGKVKKAIAQAGGKVIIAHEQIGVIVVHSANPQFAATVRTVPGVQSAGASRTAPLKAQGTTDVGKPQKVDLPKSQLKAAGQAAKANGEEPLEPLQWDLPAIKADKAAKVNPGSKKVTVAVIDTGVDDTHPDLKANFSAKQSANCVGGVADTSKGAWRPWDPDNDYHGTHVAGSIAAARNGVGVAGVAPGVQISALKVSEPETSLFYAESVVCAFVFAADHGVEVTNNSYYVDPWMFNCKNDADQAAIIDAVGRAASYAQRKGAINVAAAGNSDLDLAAAKLTDDSSPNDTTPVERTITPKTCWDVPTQLPGTVTVAASGVQKLKSGYSNYGLGQIDVAAPGGDSKQVPELPAKNGNILSTMPGGDWAYLAGTSMASPHVAGVAALLKSAHPKSSPQEIQWLLKKQADNPGCPTGESTCTGTKHVNSHFGYGIVDALDAVKK
>CP029541.1|AWN31989.1|2654005_2655694_-|TIGR03086-family-protein
MNEDGTGLLTIGELARLTGVPVKTIRSWSDQDLLPPVARTPAGYRLYGPDAPARLEIVRSLRELGIGLTAIRSVLHRERTVAETAEQWADALDAQIRTLRLQSAVLRSVAARGSAAEELPYMTELARLSARERRRIITDFVEDALDGVDAPAYRSGLLAATPDLPDDPTPEQIGAWIELAALVREPELRAALRRLAEYSARTAPPAGEPDAKSEPYAPEERRAPGASHATTEPRTAAAPDPAAQEQAAQEQAAQGQAAARVAELMRVRGEAAVAAGIAPDSPAAEPVIAELVAAWLPTQTGTADPPTEDNPAARARLLEQLETAAEPVVERYWQLLCTVTGRPAPPRWDTAGAWTTAALRAHPRPYGLDRSAFDGTDPDRVLRAYEQVTHDVAALVAAVRPEDLALPTPCAGWSVRQLLDHMVWENLMATSIAEDAPRDDHTADHLGDDYRAAFDDSVRAALAAFTGSGMLRRTYGPYEAPGAMIVQQVVVELLAHGWDLARATGAPTGLAPEAAEETLAAARRIYGAAPRTEGSSFAPERPAPSGASATDRLAAFLGRDPA

Crispr_ID: CP029541_6

• CRISPR_ID: CP029541_6
• CRISPR_location: 3153399-3153479
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_6

Consensus_repeat	Method
TTCTTTCGCCTTCGGCGGGTGGGGG	CRISPRCasFinder

spacers of CP029541_6

>6.1|3153424|31|CP029541|CRISPRCasFinder
GCCTGTGGTTTTCCGGCTTTCGCGCCGTGGT

CRISPR arrays and Neighbor proteins around CP029541_6

CRISPR arrays

The CRISPR arrays of CP029541_6

>merge|CP029541|6|3153399-3153479|CRISPRCasFinder
TTCTTTCGCCTTCGGCGGGTGGGGGGCCTGTGGTTTTCCGGCTTTCGCGCCGTGGTTTGTTTCGCCTTCGGCGGGTGGGGG

>CP029541|6|6|3153399-3153479|CRISPRCasFinder
TTCTTTCGCCTTCGGCGGGTGGGGG	GCCTGTGGTTTTCCGGCTTTCGCGCCGTGGT
TTGTTTCGCCTTCGGCGGGTGGGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN26933.1|3144302_3144974_+|biliverdin-producing-heme-oxygenase	unknown	unknown	gnl|CDD|350856
CP029541.1|AWN26943.1|3157226_3158858_-|alkaline-phosphatase	unknown	unknown	gnl|CDD|226070
CP029541.1|AWN26939.1|3152504_3153368_+|amidinotransferase	unknown	unknown	gnl|CDD|224747
CP029541.1|AWN26932.1|3143271_3144129_+|type-I-methionyl-aminopeptidase	unknown	unknown	gnl|CDD|235576
CP029541.1|AWN26948.1|3163955_3164873_+|hypothetical-protein	unknown	unknown	gnl|CDD|369775
CP029541.1|AWN32028.1|3144998_3145721_-|phenazine-biosynthesis-protein-PhzC/PhzF	unknown	unknown	gnl|CDD|223461
CP029541.1|AWN26941.1|3154651_3155788_-|esterase	unknown	unknown	gnl|CDD|179620
CP029541.1|AWN26946.1|3161441_3162476_+|peptidase	unknown	unknown	gnl|CDD|226119
CP029541.1|AWN26934.1|3146021_3147176_+|peptidase-M75	unknown	unknown	gnl|CDD|271139
CP029541.1|AWN26938.1|3151470_3152070_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|379883
CP029541.1|AWN26942.1|3155784_3157101_-|Bcr/CflA-family-drug-resistance-efflux-transporter	unknown	unknown	gnl|CDD|340878
CP029541.1|AWN26935.1|3147200_3148529_+|deferrochelatase/peroxidase-EfeB	unknown	unknown	gnl|CDD|273606
CP029541.1|AWN26944.1|3159036_3159966_+|Tat-pathway-signal-sequence-domain-protein	unknown	unknown	gnl|CDD|373084
CP029541.1|AWN32029.1|3149564_3150449_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN26945.1|3160028_3160241_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN32030.1|3160233_3160977_+|3-oxoacyl-ACP-reductase	unknown	unknown	gnl|CDD|212491
CP029541.1|AWN26940.1|3153657_3154611_-|rRNA-methyltransferase	unknown	unknown	gnl|CDD|286344
CP029541.1|AWN26936.1|3148597_3149590_+|iron-transporter	unknown	unknown	gnl|CDD|251822
CP029541.1|AWN26947.1|3162617_3163433_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN26937.1|3150560_3151307_-|DNA-primase	unknown	unknown	gnl|CDD|378140

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN26933.1|3144302_3144974_+|biliverdin-producing-heme-oxygenase	gnl|CDD|350856	cd19165, HemeO, heme oxygenase in eukaryotes and some bacteria. This subfamily contains heme oxygenase (HO, EC 1.14.14.18) found in eukaryotes as well as some proteobacteria, including cyanobacteria. Heme oxygenase (HO) catalyzes the rate limiting step in the degradation of heme to biliverdin in a multi-step reaction. HO is essential for recycling of iron from heme which is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. In vertebrates, HO plays a role in heme homeostasis and oxidative stress response, and cellular signaling in mammals that include isoforms HO-1, HO-2 and HO-3. HO-1 is ubiquitously expressed after induction while HO-2 expression is constitutive, mostly limited to certain organs, such as the brain, testes, and the vascular system. HO-3 is non-functional in humans, suggesting that the Hmox3 gene is a pseudogene derived from HO-2 transcripts. In higher plants and cyanobacteria, heme oxygenase is required for the synthesis of light-harvesting pigments, which contain tetrapyrrols derived from biliverdin. Candida albicans expresses a heme oxygenase that is required for the utilization of heme as a nutritional iron source, whereas Saccharomyces cerevisiae responds to iron deprivation by increasing Hmx1p transcription, which is controlled by the major iron-dependent transcription factor, Aft1p, and promotes both the re-utilization of heme iron and the regulation of heme-dependent transcription during periods of iron scarcity. In pathogenic bacteria, HO is part of a pathway for iron acquisition from host heme. In Leptospira interrogans, a pathogenic spirochete that causes leptospirosis, HO is required for iron utilization when hemoglobin is the sole iron source, thus making HO an interesting target for novel antimicrobial agents. HO shares tertiary structure similarity to methane monooxygenase (EC 1.14.13.25), ribonucleotide reductase (EC 1.17.4.1) and thiaminase II (EC 3.5.99.2), but shares little sequence homology.	1.34251e-83
CP029541.1|AWN26943.1|3157226_3158858_-|alkaline-phosphatase	gnl|CDD|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	2.09674e-156
CP029541.1|AWN26939.1|3152504_3153368_+|amidinotransferase	gnl|CDD|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	1.46578e-56
CP029541.1|AWN26932.1|3143271_3144129_+|type-I-methionyl-aminopeptidase	gnl|CDD|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	4.77523e-144
CP029541.1|AWN26948.1|3163955_3164873_+|hypothetical-protein	gnl|CDD|369775	pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal to the PE (pfam00934) and PPE (pfam00823) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands.	1.55691e-14
CP029541.1|AWN26941.1|3154651_3155788_-|esterase	gnl|CDD|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	3.63094e-45
CP029541.1|AWN32028.1|3144998_3145721_-|phenazine-biosynthesis-protein-PhzC/PhzF	gnl|CDD|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.29582e-16
CP029541.1|AWN26946.1|3161441_3162476_+|peptidase	gnl|CDD|226119	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism].	5.21391e-06
CP029541.1|AWN26934.1|3146021_3147176_+|peptidase-M75	gnl|CDD|271139	cd14656, Imelysin-like_EfeO, EfeO is a component of the EfeUOB operon. This family includes the EfeO domain, an essential component of the EfeUOB operon which is highly conserved in bacteria. However, its biochemical function is unknown. EfeO contains an N-terminal cupredoxin (CUP)-like domain and C-terminal imelysin-like domain that may bind iron. Algp7, a member of EfeO family protein from Sphingomonas sp. A1, is found to bind alginate at neutral pH, but does not contain the CUP domain, thus having a role that does not seem to be related to iron uptake. Some members of this family are fused to an N-terminal putative EfeU ion permease domain. The imelysin-like domain of this family also contains the GxHxxE sequence motif and a highly conserved functional site, suggesting a similar role to other imelysin family proteins containing the same motif.	4.66919e-92
CP029541.1|AWN26938.1|3151470_3152070_-|TetR-family-transcriptional-regulator	gnl|CDD|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	1.35286e-26
CP029541.1|AWN26942.1|3155784_3157101_-|Bcr/CflA-family-drug-resistance-efflux-transporter	gnl|CDD|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.41033e-106
CP029541.1|AWN26935.1|3147200_3148529_+|deferrochelatase/peroxidase-EfeB	gnl|CDD|273606	TIGR01412, Probable_deferrochelatase/peroxidase_EfeN, Tat-translocated enzyme. This model represents a small family of proteins with a typical Tat (twin-arginine translocation) signal sequence, suggesting that the family is exported in a folded state, perhaps with a bound redox cofactor. Members of this family show homology to Dyp, a dye-decolorizing peroxidase from Geotrichum candidum that lacks any typical heme-binding site.	3.87988e-179
CP029541.1|AWN26944.1|3159036_3159966_+|Tat-pathway-signal-sequence-domain-protein	gnl|CDD|373084	pfam14472, DUF4429, Domain of unknown function (DUF4429). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and viruses, and is approximately 90 amino acids in length. This domain is often found in two tandem copies.	7.77195e-27
CP029541.1|AWN32030.1|3160233_3160977_+|3-oxoacyl-ACP-reductase	gnl|CDD|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.32901e-61
CP029541.1|AWN26940.1|3153657_3154611_-|rRNA-methyltransferase	gnl|CDD|286344	pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.	3.93659e-115
CP029541.1|AWN26936.1|3148597_3149590_+|iron-transporter	gnl|CDD|251822	pfam03239, FTR1, Iron permease FTR1 family.	6.72309e-72
CP029541.1|AWN26937.1|3150560_3151307_-|DNA-primase	gnl|CDD|378140	pfam09250, Prim-Pol, Bifunctional DNA primase/polymerase, N-terminal. Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities.	1.20573e-23

Protein sequences

>CP029541.1|AWN26939.1|3152504_3153368_+|amidinotransferase
MRTLRRSATPRRYLMCPPTYFRVSYSINPWMDPDKPVDLALSHAQWEDLRDRYRALGHTVEELPAHPAFPDMVFAANGATVVDGRVLGARFAFAERYGEAAVHAEWYRGHGFDAVREPRHVNEGEGDFAVTASWLLAGRGFRSSPLSHAEAQEYFARPVIGLDLVDPRYYHLDTALCVLDPGGGEPGGGAPGGGAAEVMYFPGAFSAGSRAVLARLFPDALIAGPADAAAFGLNAVSDGRHVLLPQAAVGLFEPLRERGYEPIGMDLTELLKGGGSVKCVTAELRLG
>CP029541.1|AWN26938.1|3151470_3152070_-|TetR-family-transcriptional-regulator
MANKAAPDSSRRSERSRRAIFDAALTLVGEVGYDKLTIEGIASRAGVGKQTIYRWWPSKAAVLLDAFTAGVDEYDVKGLPDTGDLAADLKSVLRATADEFNDPAFQAPYRALAAAGANDEELSRTFVARLMEPGTRLYVDRIRTAQETGEVAADIDARIAVEMLLSPFSQRWLMRTGELTHDFVDTLVDQVLRGLRPRG
>CP029541.1|AWN26937.1|3150560_3151307_-|DNA-primase
MERKSRFSQWLRRPKSGSDGGDTDTGSAAARGREDLLLAAADAGFPVAPAAHPSGYGCSCERIGCPTPGRHPVSFGWQTVATTDRDKVAAWVRTLPQANFITATGITHDVLDVPVEAGRSALGRLDGAGIDVGPITLSGAGFGDGRMLFFTATRGTPDDEDEWWPCELDCHPETMDEHPGLRWHCRGSYVLLPPSTLPGDQPAVTWLRGPELPLPDPLTLLESLTDACAEFNDREPHHHEAHAWPIGR
>CP029541.1|AWN32029.1|3149564_3150449_+|hypothetical-protein
MLPAVSKAEGTKALTRFTEGFNQAYRQLNPKLNPSFEAGALLAIDQAGIKAAHALRPQGNPGFRALEFQDPHFTVPKQAGWPKYFIADAVSNRKDASGRNTRWFLVFSRNDIAEKWRAVYFAQFPGNKAPELKTKNGYAEAVPLGSGSGLTVAPGKLSGAYADYLNTGKGSVFAPGPQTDGWRERRAKDSRKVGSRVQWRDTASDHQPVALRTTDGGALVFFSTVYHQQQTMFAGATISVPEELRGLVVGPEKKTNRMAFTTVSSQAVTVPAKGSGDKVTILNRREGKTSVEPL
>CP029541.1|AWN26936.1|3148597_3149590_+|iron-transporter
MFGNYLIGLREGLEASLVVCILIAYLVKTGRREALRPVWLGIALAVVLSFAFGAALQFGSQTLTFKAQEALGGSLSIIAVCLVTWMVFWMRRTARHLKKELHGKLDAALQMGTVALVVTAFLSVGREGLETALFVWTAAQSANDGVRPLVGALLGLLTAVALGWLFYRGAVRINLAKFFTWTGGMLVVVAAGVLAYGFHDLQEAEFLPGLGSKAFDVSEQIPVDSWYGTLLKGVFNFQPDPTVLQVTVWALYLIPTLLFFLAPGRVSPNRATPAAAPSAPVAPKEPEPHDTQVAVPGARNSDVGSDGAADTERVHDGARREGDAAGGVEG
>CP029541.1|AWN26935.1|3147200_3148529_+|deferrochelatase/peroxidase-EfeB
MTHDDGTPTENTATEDGQAAQTANGRAPSRRSLLGWGGAGLALGAVSAGGTAAALRTGDDARPAGADATAGSAIAFHGRHQAGIASAVQDRLHFASFDVTTDDRDELIALLKEWTKAAARMTAGDAVGGGAVGGLAEAPPDDTGEALGLPPSRLTLTFGIGPTLFEKDGKDRFGIKARRPEALIDLPQFPGDNLDKARSGGDLCVQACADDPQVAVHAIRNLARIGFGKVAIRWSQLGFGKTSSTTPDAQTPRNMFGFKDGTHNLAGTDTAALDKHVWVADGEAKGKESWMAGGSYLVARRIRMHIETWDRTSLQEQEEIFGRNKGEGAPVGKKHERDTPHLKSMLPTAHVRLAHPDSNGGVRILRRGYSFTDGTDGLGRLDAGLFFLAYQRDVRQGFVPLQKRLAATDALNEYIQHVGSAVFAVPPGVRNTDDWWGRALFT
>CP029541.1|AWN26934.1|3146021_3147176_+|peptidase-M75
MRALRSSAVAAIAAATAVTAVAGCAAKNDGKGGGGKGTIEVTATDSSCELSAKEFPAGHVRFAVQNKGSKVTEMYVYAPGDRIVTERENIGPGTRTEITAEIKAGSYEIACKPGMKGDGIRQKVTASGKGASTKRDPKLDAAVAAYRKYVQEQADQTLPAAQKFADAVKDGDVEAAKKTYALSRVGWERTEPVAESFGDIDPKVDVRADGLEKGQKWTGWHKLEKSLWEEKKISGDDKKLADQLITDLKDWQKRVGKAEITPTSMANGAKELLDEVATGKVTGEEERYSHTDLLDFHANVEGAEKAYELLKPVVGKNDPALAKELDKQFKVIGELLDEHRDSKSADGFASYDTVGKSERKKLSDGVNALAEPLSKLAAAVATAK
>CP029541.1|AWN32028.1|3144998_3145721_-|phenazine-biosynthesis-protein-PhzC/PhzF
MADLEVLRVFCGPDGAGGNALGVVRDGSALPGAEARAALAAELGFSETVFLDDASRGTVDIHTPSVRLPFAGHPLVGLAWLLRGLGRPPRTLRPPAGEVAVAFEGDLTWVRGRAEWVPARTTRRHASPAEVDALPAPPPGEGWLYAWAWQDEAAGVVRARAFPRRGDGIAEDEATGAAAMLLTHELGRPLDIRQGTGSQILTRTYPDGTLAVGGRVRRATPYPRAAAAPEGADEQTPEGS
>CP029541.1|AWN26933.1|3144302_3144974_+|biliverdin-producing-heme-oxygenase
METSSPTPSAPFSTVIRTASHEQHTEAENSSFMSDLLGGRLGVRAYRRYTEQLWFVYRALEGASGPLAGDPVAGPFLRPELARTAALERDLAHLGGPSWRDGLAPLPATAAYADRVTACARDWPAGFVAHHYTRYLGDLSGGQIIRGTAEKAWGFARKGDGVRFYVFEDIANPAAFKREYRALLDALPVDELEKQRVVDECKRAFRLNSAVFRELGEQFPLSA
>CP029541.1|AWN26932.1|3143271_3144129_+|type-I-methionyl-aminopeptidase
MSGQSLLVPGKISPTRPVPASIARPEYVGKDAPTPYTGPEVQDADTIERMRIAGRIAAQAMAEAAKLIAPGVTTDELDRVAHEFMCDHGAYPSTLGYRGFPKSLCSSLNEVICHGIPDSTVLKDGDIVNLDVTAYINGVHGDNNATYLCGDVDEESTLLVERTREALNRAIKAVKPGRQINIIGRVIESYAKRFGYGVVRDFTGHGINSSFHSGLIVPHYDSPHHTTDIKPGMTFTIEPMLTLGSYDYDMWDDGWTVVTKDRKRTAQFEHTLVVTDTGAEILTLP
>CP029541.1|AWN26940.1|3153657_3154611_-|rRNA-methyltransferase
MHEELRAALAGLLDGLPPKQAAQAVDRLIANYRGRTPTDAPVLRDRADVAAYAAYRMPATFEAVRAALTAFAARVPDWSPATHVDIGGGTGAATWATAATWEGHHSTVLDWAQPALDLGQELAAKTLPDTTWQRQTIGEGLTVPAGTDLVTVSYVLGELRPEDRHAVVAAAAAAAKAVVLIEPGTPDGYLRIREARTQLTEAGLRIVAPCPHSDTCPIVPGEDWCHFSARVSRSSLHRQVKGGSLPYEDEKFSYVAATTLDATPAPARIVRKPQLRKGQVLLDLCTTDEGLQRTTVTKRHGTHYRKARDASWGDDWS
>CP029541.1|AWN26941.1|3154651_3155788_-|esterase
MNATALTYGPPARAGLDPGWVERLVRGVRALPEGRPPWSPGVVVLAGRGPVVAAEAAAGWALRYRAYDPERDRGLDLPRDLWEPMRVGTVFDLASLSKLFTAIAAVQQVERGRLALDDEVRADLPAFAPGITVRQLLTHTSGLAPELPFYDHRDRTAQLALLWREAAAPSGGRAPVHRYSDLNLIALQLILEQRTGHRLDALIRDGITGPLGMSSTSYGPLAPQGVAATEDQRRPWAKADRGMIRGEVHDENAWALGGVAGHAGLFSTAQDLAVLCRTLLNGGAYGTARILGPDAVAALLDPPGLGFGVDQPYFMGELAGRGAAGHTGFTGTSLVLDRATDTFLVLLANTVHPRRRAGGSAPRAAAATRLARAVSRAT
>CP029541.1|AWN26942.1|3155784_3157101_-|Bcr/CflA-family-drug-resistance-efflux-transporter
MTEPGAAETQDLPPIAERGAAAAPAASRRTSLLVTLVLGGLTAVPPLSMDMYLPALPQVTAALHSPAATVQLTLTTCLAGMALGQMIVGPMSDKWGRRRPLLAGMVIYVLATALCAVATNAELLIAFRLLQGLAGAAGIVIARAVVRDLYDGVAMARFFSTLMLISGVAPVVAPLIGGQILRLTDWRGVFVVLTAVGVALTLLVWRKLHETLPPERRHSGGLGQTLRTMRDLLADRVFSGYALVGAFAFAALFAYISASPFVVQEIYGASPQTFGLLFGINSVGLVAVGQINGKLLVGRVGLDKVLGTGLAVIALAATALLLMSAGVFGHVGLVPTAAGLFVLMAAMGLVMPSTNTLALLRTPHAAGSASALLGTSTFLLGSVASPLVGIAGERTAVPMALVQLSCAVLALVCFLGMCRPWQRRGESNGSTAGERTRL
>CP029541.1|AWN26943.1|3157226_3158858_-|alkaline-phosphatase
MTHHAPHEQEIRAAAAHFGRRRFLTATGAAAALAFATNLPGTGAAYAAEADARKITENPFTLGVASGDPQPGSVVLWTRLAPRPYEPGNGMPDARVTVRWEVAYDEHFKRLAGQGRADAHAEFNHSVHIEPTGLAPDRVYYYRFRAGSWISPVGRTRTAPTKGARLSDLKLAAVSCQAYHDGYFTAHRHLAEEDLDVVFHLGDYLYEYPVGAAGGARNYTDRTLPAVFNRETVTLEDYRLRYALYKSDPDLQAAHAAHPFIVTWDDHEVENNYASDISEGNLPTAEFLVRRAAAYRAYWENQPLRRPQRPQGADARLHRRLQYGQLAQFDILDTRQYRSDQAYGDGWHAPGPESLDPARTLTGAAQERWLIDGWRQSSARWNVLPQQVTFSERRNATGPGYQLSMDAWDGYAASRDRVLAGAESAGVDNLVVLTGDVHVHYAFDIKEDFKDPGSRTAGVELVTTSIASGKDGADKPANWDTYLAANPHLKFYNGRRGYLTVTLEQDTARADFRTVSAVTTPGAPVHTAASFVSEAGDPGLKPA
>CP029541.1|AWN26944.1|3159036_3159966_+|Tat-pathway-signal-sequence-domain-protein
MAELMVRDGTWSFDGDVVRIVPGRERGVHKLRQDLGEFTVPLAAMAGIAHEPGRKGGRLRLRLRDGADPLLQVTGGGLPDEANPYRLTVDAGRVDVAEYFVDAVRQALMLEQIPDGPADHYLLPGPSVPLSAAGVDGVATFDGERVHIEWRWNTSETKRDWGPRNFALSELEAVEWRAAAGLESGHLRFRTRGATERLKPENDPNSIELWGFKKESGTTALLAAAVAARLPHPSAGAGKSLPAAAPPAPLAPAAPLTPAAPRASAAAPAEDHDALLRRLRELGDLRRDGILTEEEFTATKAAVLRRFHT
>CP029541.1|AWN26945.1|3160028_3160241_-|hypothetical-protein
MTTATCRGAAPSCCVSCAAGAVCVLCPPREDGAGSVGRGAVAVPPTCPARAIGVIRAARAGSVFSAMAAA
>CP029541.1|AWN32030.1|3160233_3160977_+|3-oxoacyl-ACP-reductase
MVTGAGSGIGRAVAHALNAAGWTVVLAGRRAEALAETSRLAGPLDPDGPAIMTVPTDVTRPDQVDALFATVHERFGQLDLLFNNAGTFGRAAPLEELSYDDWRTVVDVNLTGSFLCAQAAFRAMKAQEPQGGRIINNGSVSAHTPRPHSVAYTATKHAMTGLTKSLSLDGRPYGIACGQIDIGNAATEMTGRMQTGILQANGRTAVEPVMDAADVARTVVHMAALPLTANVQFATVMATNMPYIGRG
>CP029541.1|AWN26946.1|3161441_3162476_+|peptidase
MRRTVRGIPAVHGIPAPHPARRSRAALGTLTAAGTLLALLLPTGQAGAAPQPGHHSSATPQTTLGAFWTADRMRAAAPLDLATPTKRSAPAAVPRSAPLKVAPTLPRLPEAGSLLPGSLPQAGGPWTGGGAVVKTTGRVFFTYQGRNASCSGDAVTSGNKSTVITAGHCVKLQGAWHTNWVFVPGYHDGQAPYGKWPAAKTLATPQWTASEDINYDVGAAVVAPLDGKKLTDVVGGQGLSFNSGYNKAMYAFGFPAAAPYDGSKLIYCSGNTIKDPLFSSDHGLPCNMTGGSSGGPWFTSFDEKTGTGLQSSVNSFGYQFWPNNMFGPYFGDDAKNLYNQAQTS
>CP029541.1|AWN26947.1|3162617_3163433_-|hypothetical-protein
MKIDSDIPKSAVVGRPTPKFRIDAVVPVSSDRTKVIRLAGVRSIEGTADAKALVAAPQGDLDVSLPFDVSRTNVPESGSFHVKATGAAPARTFTRPGSAKITIGDLTLRLALKDAKGNPAGPGEVDAPCTLDAGQNTVVASFDITGAKTPSGSVTSGATGTAGAGAPGAQTSGSTGSGTGSTTDGTTRSTTSGPSGTRAGSPSGDRAADPAKSPSGGARDGATTDRPTGAFTSTGATSGPDTEDLVLLAVGTLVVGTVAVAAVFRFRSRGR
>CP029541.1|AWN26948.1|3163955_3164873_+|hypothetical-protein
MRRTRSLLAILLALPALGLSTPQAVAAAPQAQTRADCPNTMIFEVGGHLDGDATVYDRSNAALPEGVSFTKIHYSASIAPYPGDTKTLDDSVAEGIAKLDAAVKNFHGACSTSHMTIAGYSQGAIVAGDELAALSGSDAVPHDQINGVLYGDPRRPGVDGGPGGIETNLPTILPGMTMKGPRGFGDLTVKEICNTNDGICHSENLITNLACFANGVVGYFTGDHGYDIDPHAVSGGGDQLNRQAPKVPLCGPGLPVPSKTPHELFNNNRTAARHQVAGYRTMVTPLLPAGLRGQLAHFPWLPVAG

Crispr_ID: CP029541_7

• CRISPR_ID: CP029541_7
• CRISPR_location: 3358289-3358392
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_7

Consensus_repeat	Method
TGCTCTGCCAATTGAGCTACAGGGGA	CRISPRCasFinder

spacers of CP029541_7

>7.1|3358315|52|CP029541|CRISPRCasFinder
CCGAGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC

CRISPR arrays and Neighbor proteins around CP029541_7

CRISPR arrays

The CRISPR arrays of CP029541_7

>merge|CP029541|7|3358289-3358392|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGACCGAGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGCTGCTCTGCCAATTGAGCTACAGGGGA

>CP029541|7|7|3358289-3358392|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGA	CCGAGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC
TGCTCTGCCAATTGAGCTACAGGGGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN27102.1|3360502_3361738_-|RNA-polymerase-subunit-sigma-70	unknown	unknown	gnl|CDD|235640
CP029541.1|AWN27105.1|3364877_3366143_-|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|170080
CP029541.1|AWN27093.1|3351297_3352020_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27106.1|3366419_3367733_-|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl|CDD|235098
CP029541.1|AWN27091.1|3349185_3350061_+|glycosyl-transferase	unknown	unknown	gnl|CDD|224137
CP029541.1|AWN27100.1|3358610_3358910_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27108.1|3369925_3370366_-|hypothetical-protein	unknown	unknown	gnl|CDD|377602
CP029541.1|AWN32053.1|3368746_3369724_-|adenosine-deaminase	unknown	unknown	gnl|CDD|236480
CP029541.1|AWN27103.1|3361875_3363795_-|DNA-primase	unknown	unknown	gnl|CDD|235551
CP029541.1|AWN27096.1|3354263_3354896_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27092.1|3350299_3351070_+|SARP-family-transcriptional-regulator	unknown	unknown	gnl|CDD|226156
CP029541.1|AWN27097.1|3354905_3355553_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN32052.1|3348595_3348958_-|DUF861-domain-containing-protein	unknown	unknown	gnl|CDD|380395
CP029541.1|AWN27099.1|3357075_3357381_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27095.1|3353459_3354089_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27094.1|3352016_3353249_+|hypothetical-protein	unknown	unknown	gnl|CDD|214802
CP029541.1|AWN27098.1|3355552_3357004_-|hypothetical-protein	unknown	unknown	gnl|CDD|224117
CP029541.1|AWN27107.1|3367729_3368602_-|sirohydrochlorin-chelatase	unknown	unknown	gnl|CDD|225049
CP029541.1|AWN27101.1|3358994_3360458_+|sugar-kinase	unknown	unknown	gnl|CDD|198375
CP029541.1|AWN27104.1|3363863_3364868_-|threo-3-hydroxy-L-aspartate-ammonia-lyase	unknown	unknown	gnl|CDD|235918

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN27105.1|3364877_3366143_-|FAD-dependent-oxidoreductase	gnl|CDD|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	1.66165e-70
CP029541.1|AWN27102.1|3360502_3361738_-|RNA-polymerase-subunit-sigma-70	gnl|CDD|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	7.7912e-162
CP029541.1|AWN27101.1|3358994_3360458_+|sugar-kinase	gnl|CDD|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	3.17925e-112
CP029541.1|AWN27108.1|3369925_3370366_-|hypothetical-protein	gnl|CDD|377602	pfam06094, GGACT, Gamma-glutamyl cyclotransferase, AIG2-like. GGACT, gamma-glutamylamine cyclotransferase, is a ubiquitous enzyme found in bacteria, plants, and metazoans from Dictyostelium through to humans. It converts gamma-glutamylamines to free amines and 5-oxoproline.	3.13406e-20
CP029541.1|AWN32053.1|3368746_3369724_-|adenosine-deaminase	gnl|CDD|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	3.31361e-155
CP029541.1|AWN27103.1|3361875_3363795_-|DNA-primase	gnl|CDD|235551	PRK05667, dnaG, DNA primase; Validated.	0
CP029541.1|AWN27092.1|3350299_3351070_+|SARP-family-transcriptional-regulator	gnl|CDD|226156	COG3629, DnrI, DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms].	7.46083e-22
CP029541.1|AWN32052.1|3348595_3348958_-|DUF861-domain-containing-protein	gnl|CDD|380395	cd06990, cupin_DUF861, domain of unknown function DUF 861, cupin domain. This family contains proteins which seem to be specific to bacteria and some fungi. The function of this family is unknown but contains a cupin domain without a metal binding site. Cupins are a functionally diverse superfamily originally discovered based on the highly conserved motif found in germin and germin-like proteins. This conserved motif forms a beta-barrel fold found in all of the cupins, giving rise to the name cupin (cupa is the Latin term for small barrel).	1.50242e-58
CP029541.1|AWN27094.1|3352016_3353249_+|hypothetical-protein	gnl|CDD|214802	smart00752, HTTM, Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.	6.6931e-29
CP029541.1|AWN27091.1|3349185_3350061_+|glycosyl-transferase	gnl|CDD|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	1.0224e-20
CP029541.1|AWN27106.1|3366419_3367733_-|deoxyguanosinetriphosphate-triphosphohydrolase	gnl|CDD|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
CP029541.1|AWN27107.1|3367729_3368602_-|sirohydrochlorin-chelatase	gnl|CDD|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	2.56683e-25
CP029541.1|AWN27098.1|3355552_3357004_-|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	4.12815e-05
CP029541.1|AWN27104.1|3363863_3364868_-|threo-3-hydroxy-L-aspartate-ammonia-lyase	gnl|CDD|235918	PRK07048, PRK07048, threo-3-hydroxy-L-aspartate ammonia-lyase.	7.51066e-163

Protein sequences

>CP029541.1|AWN27099.1|3357075_3357381_-|hypothetical-protein
MGGYFKVEADDLGRLLKDLHDSQENMRKALDALKDVGPKSTGAEALDNACDEFHDSWDNAIKKIADGTQAIEEKLKQTKSNYEAVEHALRDGFNKGSKGSK
>CP029541.1|AWN27098.1|3355552_3357004_-|hypothetical-protein
MSKQNFPALGFNPAPGHLESVDDLTGKLDAAMRSLSSAHSVLRRLGRGAGVWEGEAARAFAGQVGELPKYVSDSRDAMRDAATQLKSWHTALASYQHKGRQYEADAAAAKNEQKTRTAEHERAEAAYNKAASDPALSLAGQYYTSKAELDSAQAKIDAASDRLDKANNAVDQAQKRLDSATSELESIIKKAEDLLDNHQDEARGIADRIRKATEGAPNPGFWEGLGDAFTRLGHSIQNWCTKHADLLKSIGDALSIASSILGVASLLTLWCPPLAGALALAGGALSLGALATHGAAKLGGADVGVMDLVGDGLGVVPFGKFAGSAAKGVKVSMKVTRIEGQTVKSIDKVKQIEALKNAGFEGRKLEGMNMLRRPIVEGTEKFETTGMSLGNRAKLAWTHHVQTTVGAGIKEAGLSKGLTTFMESRFTPTAVKDSLGAAIRADGSIDPVSWWSKGPQVAQQVPGIAIDAHTAITSPGTPAAGRL
>CP029541.1|AWN27097.1|3354905_3355553_-|hypothetical-protein
MSGLNREVSIEFETPDVFHELPLHLPAEVLDAALWELAEKIWPAGTEFQRETTALVYADLTDTLVADGVMYASLGLFETEDGEVSTANLIARVESVDGEEPAVVAASVQEELALQEHRDVHQVDLPCGPAVLSFHSTEIDGDSALSSLAFAHVELYVPSSLPGWLAVLSLSTPSFAELPRYVDWLRQIGESLAFRLAAQPEEESPTPTDVRSVFG
>CP029541.1|AWN27096.1|3354263_3354896_-|hypothetical-protein
MDSPTKVWFHARNPSKSEPGECAFPLEYVVAPFRGEPFAYATVGTPPNWALPPGTEPRYTLYRTKDTSEPIVVLVAQGQQFTVLTPDHHVLAELRLPPPEQYWRPVREIVRPKQPLLRARGASISSIIKSVLYLPFIIIEFLLYLTDGDIVIDPPTRTVWKTTQGLWKRTALKQKIGEPCYRVYGKHLDHRIAYAQSVAGLWRPDRGDDG
>CP029541.1|AWN27095.1|3353459_3354089_-|hypothetical-protein
MVGASFIAAALAGTMGAVGVTGAEPAAAKAPVQSTQSAPAAPGVLCISKVTGKVIDVAPGSVRALCRSGGGGGGGGGGGGGGIGGRTVTGASTTTTGSTTTTAASTTTGATTTTAAQTTTGATTTGAQTTTGGTTTGAQTTTGASTTTGATTSTGATTTGATTTGATTIGGGSTGATGATGATGATGGTTGAGGTTGAGGTTGATGAGG
>CP029541.1|AWN27094.1|3352016_3353249_+|hypothetical-protein
MSVEKDTARTPSPFKGMGSKLDAAIARFLYKITSAALAPYQAAVVRIGFALTFALYLLREWPHRLELYGTTNPWGFDLAQRLIASNNAFTVLLWSNHRLWFELVYHGVLVVSVLLLLGWHTRTMSILFMVGVLSLMNRSVLLGDGGDTLIHLMASYLVLTRCGQVWSLDARRRERQETPSRHGCDRVSVTLWILAGAGLALAQMTGFAKLPKGWVLILWGLWLIQALWFWAGRRRSPDTWALLDVVANLVHNAAMLVIAAQVCLLYATAGWYKVQGSRWQDGSALHFPLHLDYFSPWAGLSQVLDSRSTIVTLITYGTVVAQVAFPFTLLNRRVKNVMLAILMTEHATIAVICGLPFFSLAMIVSDMVFLPTNFLRWGGSRIAAARDRITAPLHRNKGPSDRNESRGVTV
>CP029541.1|AWN27093.1|3351297_3352020_+|hypothetical-protein
MVEPRGSSDETGTDGTGEGETPGRSAAVRGLPSAPSGSWSLPSRIVIMAAVVVLTIGVTLHLLLVFLFVAPPNAISKKYDRLVKGYVYPEFDQNWQLFAPNPLQDNIAVHARAEVAFSDGSRRTTNWLALTAQDIREIRRNPVPSHAHQNLLRQAWDFYNRTHDAKGRAIGLRGELSEAFVRRIAAHRLGYRIDGGQVVKVQIYATNTPIIPPKWSGDSGSTKKTYQVLPWWPVSKKEFP
>CP029541.1|AWN27092.1|3350299_3351070_+|SARP-family-transcriptional-regulator
MSPDEPVTSRPHVNHWPAVRIALLGGFDLVVGDVPVVVPVGSKRLLAFIALNGLTAAPRSLVAGSLWPEACEQSAHANLRSALSRLRSIGRRALEISPTDVRLGRDVSVDLHHARSLAQRILDPGVPPGELQLSAATVDQLSGDLLPGWYDDWALQEAERWQQLRLHALESLAGEFIDTKQFAGAVAAAHAAVQANPLRESSQASLIRAHLAEGNLSEALDDFERYEHRLRDELGLRPTPRLRHLMDGLLRPHPGR
>CP029541.1|AWN27091.1|3349185_3350061_+|glycosyl-transferase
MRHLRVGVAILTMGNRPAELRALLDSVAKQDLRPAHIVVIGNGSPLPPLPHGAIGVELSDNLGVSGGRNVALDELRKLGDLDVVVDLDDDGLLISPDVFSRLAELHARDPQLGIVSFRIADERGRTQRRHAPRLRAGDPARGGLVTTFLGGGHSLSVPMLERIGGWPDDFFYAHEETDLAWRALDDGWHIRYVPELVLQHPYTSPTRHAVYHRMVARNRVWLAKRHLPALLVPAYLGVWAALTAVRSPSVGGLRAWAAGFAEGVRTPCGRRRPMRWRTVWRMTKLGRPPIV
>CP029541.1|AWN32052.1|3348595_3348958_-|DUF861-domain-containing-protein
MMEVKTVDKPDERRDFPRGHLEALHLTGLDFAVATFEPGWRWSESVRPIAGTDSCEVHHNCFVVQGRMRIRMNDGAESEVGPGDVFVCPPGHDAWVVGDEQCIVYDFAGGMAKEYGKAKS
>CP029541.1|AWN27100.1|3358610_3358910_+|hypothetical-protein
MRYRLTFIAGLATGYVLGARAGRERYEQLRKAAQRVSQNPAVRNTAESAALTGREAASKAFGTVSAKVGDRLPASVTDRVRSLREQRGSDEDDWGTSNT
>CP029541.1|AWN27101.1|3358994_3360458_+|sugar-kinase
MDSSSESTRIVVCDADTGAVIRRGYAPHPVEKGPEVDPQAWLISLGEAAGSGLLEGVQAIGVSAQPHGLLPLDVEGNLVRPALVGNDKRAQSAAADLIDSLGGRTAWAQAVGAVPQATHAVTKLRWLARTEPAHAARIAEVMQPHDWLAWQLLGRPARRTTDRGGASATGFWSAATGSYRPDLVELALGHQVRLPELLSPSGTAGFTPEGLLISAGTGETMAAAFGLGVGEGDAVVSLGASGSVFGIHHEALVDPSGTITSFADATGRHLPVVHTSNAVRVLRGAAEMLGTDLEGLSELAMNSSPGAYGMVLLPYLEGEKTPHLPHTAGSLHGMRRDSMKPEHLARAAVEGMLCGLADALDVLRGRGMAVRRVFLLGAAAELFAVQAVAPALFGVPVVVPQPAEYAALGAARQAAWAWGVAHGTLTPAGGAESGPGGGPAWVDPPQWPAATSQVFEPGEELAVGQAVRQQYAAVRDEAYPGAFQREA
>CP029541.1|AWN27102.1|3360502_3361738_-|RNA-polymerase-subunit-sigma-70
MPESSVRGGSGRTAPESPAEPLVTYGTDGGSAATVPDLSAASAAITLEVALVQTQTLADAPAATEPDTEPDAEAAAEPLTVPQQAEPPAAEMIVEEIIPEPVPRPETGSPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEKLTHATDLSSQLAFDLDKLVVLGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERGCEPTPEEVAAHLDLTGERVSEVLRLAQEPVSLHAPVGEEEDVALGDLIEDGDAASPVESAAFLLLREHLDAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD
>CP029541.1|AWN27103.1|3361875_3363795_-|DNA-primase
MAGRINDDDVKAVRDAVPIDAVVSEYLQLRNAGGGNLKGLCPFHDEKSPSFHVSPAKGLYHCFGCQEGGDTVDFVMKIDHLSFAETIERLASQAGITLRYEEGGYTPGRQQGERTRLVEAHKAAAQFYVEQLDSPEAEIARKFLAERGFDQSAAQHFGVGYSPAGWDHLTRFLRGRRFSDQELVLSGLSQEGRRGPIDRFRGRLMWPIRDIAGEVVGFGARKLRDDDNGPKYLNTPETPIYRKSQVLYGIDLAKKEIAKTNRAVVVEGYTDVMACHLAGVTTAIATSGTAFGEGHIKILRRLLMDNSGSEVVFTFDGDAAGQKAALRAFEDDQKFAAETSIAITPGGMDPCDLRLAKGDQAVADLVEARTPLFEFALRHVVSRHNLDTTVGRAAALDEAAPIVAHIKNSSIQHESAVQLAGMLGILDTQFVVKRVAQLARWARERGRDGGPAQGRQQQRHGQPPAAEQARTAPGPRGPALNLRSPAHRVERELLKLALQRPDLVSPAFDAYGADEFTAPPYAVVRQCIEDAGGAAAGAADQGFVPRVREAAPDDTVRAMVTELAVEPLHTRRDPDEAYAGVQLVAVRLAAVNQRVTEIRGTLQRLGPRADPEHLAAVQNELWVLQQYGQSLRERGYAAL
>CP029541.1|AWN27104.1|3363863_3364868_-|threo-3-hydroxy-L-aspartate-ammonia-lyase
MTPSPTGPTGPGSTDVPDVVTFDDVRDAARRLAGVAHRTPVLRSRTLDALVGAEVHLKCENFQRVGAFKFRGAYNALSRLSPEQLARGVVAYSSGNHAQAVALAARELGSHAVIVMPEDSPKSKTDATAGYGAEIVRYDRYTGDRAALGRQLAEERGLALIPPYEHPHIIAGQGTAALELIEETGPLDALLTPVGGGGLMAGSATAATALVPGIRMIGVEPEAGDDTLRSLAAGHPVTIPVPHTIADGQAIATPGELTFAVNRRLLDSVVLVSDDEIRAAMKFAFERLKIVTEPSGASALAALLAGRVTPLPARIGVIISGGNVGLERFLELLG
>CP029541.1|AWN27105.1|3364877_3366143_-|FAD-dependent-oxidoreductase
MVDAHQTFVIVGGGLAGAKAAETLRAEGFTGRVILICDERDHPYERPPLSKGYLLGKEERDSVFVHEPAWYAQADIELHLGQPAVHLDPGARTVRLGDGTLIVYDKLLLATGAEPRRLDIPGTGLAGVHHLRRLAHAERLRGVLASLGRDNGHLVIAGAGWIGLEVAAAARSYGAEVTVVEAAPTPLHGILGPELGGLFTDLHREHGVRFHFGARFTEIVGQDGMVLAVRTDDGEEHPAHDVLAAIGAAPRTALAEQAGLDLVDREAGGGIAVDAALRTSDPYIYAAGDVAAADHPLLDSRLRVEHWANALNGGPAAARAMLGQDVSYDRVPYFFSDQYDVGMEYSGYAPPGSYAQVVCRGDVAKREFIAFWLGADGRLLAGMNVNVWDVSESIQQLIRSGASLAPEALADPEVPLASLLP
>CP029541.1|AWN27106.1|3366419_3367733_-|deoxyguanosinetriphosphate-triphosphohydrolase
MTGTPPTIPGYTAADLERWVPEPDKRPGRTAFQRDRARVLHSAALRRLAGKTQVVTPGAHTPAWDASPRTRLTHSLECAQVGRELGAALGCDPDLVETACLAHDLGHPPFGHNGEQTLNEVAAPCGGFEGNAQSLRLLARLEPKRFVPAEDGSTVSVGLNLSRAALDAATKYPWPRGGHPTDPASPKFGVYEDDAPVYAWFRQGAPDGAQSFEAQVMDWSDDVAYSVHDVEDGLHAGHLDPNLLLADAERAEIFAVAGARYAPGAGPEELAAALDRLLEQEWWPHGYDGSALAQARLKDATSQLIGRFCLAAEGATRARWGTGRLTRYGAELVVPAETRLECAVLKAVADRYVMQRPDQEALRADQRVVIAELAEALLARAPDGLDPQFRSLFDTAPDDTARMRAVIDQIAALTDTSARSLHARLTRRPGHRGANQG
>CP029541.1|AWN27107.1|3367729_3368602_-|sirohydrochlorin-chelatase
MTAPIPHLPSAPLGTGDLAAEITAQLSTQLCRVRLRGFPPPESPGPTLVAVAHGSRDPRALPTVRALLDRVRALRPGLPVRLGHIELNRPLLADTLAGLSGEAVLVPLLFGHGHHVTHDLPAALAGAPQLTGRVAAPLGPHPLLAEALHGRLLEAGFPGAPSPRTAVVLAAAGSRAPRSARDTERTAQLLSARLGGTPVLPAYASAADPTVADAVRTLTARGHDRIAVASCFTAPGRFATQCADAAPGTAAAPLGDHPALARLVLHRYDQALLARTGSDPASVRAATVAV
>CP029541.1|AWN32053.1|3368746_3369724_-|adenosine-deaminase
MPKAELHLHIEGTLEPELAFALAARNGVELPYATEDELRRAYSFADLQSFLNLYYALMAVLRTEDDFADLAHAYLARAKEQGVRHAEIFFDPQAHTARGVPIGTVINGLARALDSAPETYGISTRLIMCFLRDESAGSALTTFEAARPYFDRITAVGLDSAEVGHPPSKFKEVFALAREAGLKCVAHAGEEGPPAYVWEALDVLGVDRIDHGVRSLEDERLVARLVADQVPLTVCPLSNVRLRVIDDLADHPLPAMLDAGLLVTVNSDDPAYFGGYADDNFTAVRDALGLDPDTLRTLARNSFRASFLDEATRERYLREVDAHQA
>CP029541.1|AWN27108.1|3369925_3370366_-|hypothetical-protein
MTREPERLPFFVYGTLRPGEANYGRTLRGRTAAEEPAHIGGALLYDGPGYPYATAGPADAVVHGALVRPRDPDYDEVCAVLDRLEGYTPGDPHNLYERVATEAVCPDGRTVRAWVYLAAAPLAARLRATGTPIEGGDWPASRAAAG

Crispr_ID: CP029541_10

• CRISPR_ID: CP029541_10
• CRISPR_location: 4160314-4160416
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_10

Consensus_repeat	Method
TGACGGAGCCGTAGGGCGTGGCGGG	CRISPRCasFinder

spacers of CP029541_10

>10.1|4160339|53|CP029541|CRISPRCasFinder
TGCGTGGCCGTGCTGACGGAGCCGTAGAGCGCGCCGGGGGCGTGGCCGTGCTG

CRISPR arrays and Neighbor proteins around CP029541_10

CRISPR arrays

The CRISPR arrays of CP029541_10

>merge|CP029541|10|4160314-4160416|CRISPRCasFinder
TGACGGAGCCGTAGGGCGTGGCGGGTGCGTGGCCGTGCTGACGGAGCCGTAGAGCGCGCCGGGGGCGTGGCCGTGCTGTGACGGAGCCGTAGGGCGTGGCGGG

>CP029541|10|10|4160314-4160416|CRISPRCasFinder
TGACGGAGCCGTAGGGCGTGGCGGG	TGCGTGGCCGTGCTGACGGAGCCGTAGAGCGCGCCGGGGGCGTGGCCGTGCTG
TGACGGAGCCGTAGGGCGTGGCGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN27667.1|4161555_4162791_-|galactokinase	unknown	unknown	gnl|CDD|223231
CP029541.1|AWN27671.1|4166803_4167112_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27659.1|4152267_4152558_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27663.1|4156802_4157300_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
CP029541.1|AWN27674.1|4168814_4169432_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27655.1|4148662_4149670_+|acyl-CoA-desaturase	unknown	unknown	gnl|CDD|224316
CP029541.1|AWN27669.1|4163761_4164880_-|galactose-1-phosphate-uridylyltransferase	unknown	unknown	gnl|CDD|238341
CP029541.1|AWN27672.1|4167176_4167899_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|225107
CP029541.1|AWN27657.1|4150680_4151316_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27662.1|4155813_4156638_-|trans-aconitate-2-methyltransferase	unknown	unknown	gnl|CDD|184509
CP029541.1|AWN27666.1|4160514_4161285_-|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|225107
CP029541.1|AWN27668.1|4162790_4163765_-|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl|CDD|187558
CP029541.1|AWN27661.1|4154983_4155616_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27658.1|4151360_4152002_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27664.1|4157475_4158270_+|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl|CDD|235546
CP029541.1|AWN27660.1|4153831_4154968_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN27673.1|4168386_4168818_+|hypothetical-protein	unknown	unknown	gnl|CDD|377787
CP029541.1|AWN27675.1|4169496_4174263_+|type-IV-secretion-protein-Rhs	unknown	unknown	gnl|CDD|225750
CP029541.1|AWN27670.1|4165102_4166773_+|Na+/galactose-cotransporter	unknown	unknown	gnl|CDD|271372
CP029541.1|AWN27656.1|4149691_4150375_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224228

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN27667.1|4161555_4162791_-|galactokinase	gnl|CDD|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	9.47529e-124
CP029541.1|AWN27663.1|4156802_4157300_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.79777e-16
CP029541.1|AWN27675.1|4169496_4174263_+|type-IV-secretion-protein-Rhs	gnl|CDD|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	6.59706e-39
CP029541.1|AWN27668.1|4162790_4163765_-|UDP-glucose-4-epimerase-GalE	gnl|CDD|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.63073e-166
CP029541.1|AWN27655.1|4148662_4149670_+|acyl-CoA-desaturase	gnl|CDD|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	5.45291e-71
CP029541.1|AWN27672.1|4167176_4167899_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.69055e-33
CP029541.1|AWN27662.1|4155813_4156638_-|trans-aconitate-2-methyltransferase	gnl|CDD|184509	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional.	3.4013e-121
CP029541.1|AWN27666.1|4160514_4161285_-|DNA-binding-response-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.05208e-40
CP029541.1|AWN27670.1|4165102_4166773_+|Na+/galactose-cotransporter	gnl|CDD|271372	cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
CP029541.1|AWN27669.1|4163761_4164880_-|galactose-1-phosphate-uridylyltransferase	gnl|CDD|238341	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.	8.37949e-119
CP029541.1|AWN27664.1|4157475_4158270_+|SDR-family-NAD(P)-dependent-oxidoreductase	gnl|CDD|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	7.06166e-76
CP029541.1|AWN27673.1|4168386_4168818_+|hypothetical-protein	gnl|CDD|377787	pfam07179, SseB, SseB protein N-terminal domain. This family consists of several SseB proteins which appear to be found exclusively in Enterobacteria. SseB is known to enhance serine-sensitivity in Escherichia coli and is part of the Salmonella pathogenicity island 2 (SPI-2) translocon. This entry contains the presumed N-terminal domain of SseB.	0.00307259
CP029541.1|AWN27656.1|4149691_4150375_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.7752e-19

Protein sequences

>CP029541.1|AWN27664.1|4157475_4158270_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSQQRAPHPANGPYGRRFEGRTVLVTGAAAGIGAATADRLAAEGAGVLLLDIDDARGEHTARRIRAAGGRASYEHCDVAGEDDWRRAVEAARQRYGPVDGLVSNAFVPSVAAADRTPLADWDRQLAVNLTGSFLGVRAALADLRTRGGAVVLTSSVHALVGLPGRPAYAAAKAGLTGLGRQLAVEYGPEVRVNSVLPGPVLTAAWDGIGEEERQASAAETAARRLGRPEEIAAAIAFLLSPEASFVTGASLVVDGGWSVYKNSS
>CP029541.1|AWN27663.1|4156802_4157300_+|MarR-family-transcriptional-regulator
MEDEVDRLVAAWRRERPDLDVEPLEVLSRVSRLARHLDRARRIAFSEVGLEPWEFDVLTALRRAGAPYQLSPGALLTQTLVTSGTMTNRIDRLAKKNLVERLPDPSDRRGVLVRLTAEGRDKADRSLAGLLYQERAILAELSRQQRSELAGLLRQLTGPFDNTPG
>CP029541.1|AWN27662.1|4155813_4156638_-|trans-aconitate-2-methyltransferase
MHDAPTWDPQQYLRHSGHRTRPFHDLLNRIPDLPRQDRTARIADLGCGPGNVTAQLTTRWPDAHITGFDNSPDMLKEAETHAGPTPGGGHLDFAPADAADWTPEETYDLIVSNAALQWVPNHPDSFARWIEALAPGGTFAFQVPGNFTSPSHALLGELCDAPQWRERLNTHGRRFIHILEPAAYLERLTDLGCAADVWETTYVQLLEGDDPVLDWVKGTALRPVLTALENDPAAREAFLAEYREALRKAYPTGRHGTVFPFRRIFAVAQKPPAH
>CP029541.1|AWN27661.1|4154983_4155616_+|hypothetical-protein
MRADLEQKIPAVLPAGEVYLGGFTTSRSPYATGTGGCDVPDKRRPRVLADGRSSSGDFLGKFGEFVFRFLTADFSSPSQFDKVTDPSKRAKAQKRKKTFFGGWDSLAGQWLAAAQPRAKVGVVVAVALTEGNFHFVYAQYNRWNGKLDEAIELGPSFRRDCLSWTRLTGAHDHDVQLGFSDGSWGTLFGPDTEECAKFFPHTLGKRDPIP
>CP029541.1|AWN27660.1|4153831_4154968_+|hypothetical-protein
MTEAVAEVALGADEDPPITFRVPPAFFEYPLTADPEALVEDLADLAAEVYPEGDDELWLRFVMMNIPLVSEMVEAGMSYAGFCLLNVEGQRSTATVTATFVDDMPQVKTMTAQDLADHLAAESPDSEVEVITLAAGEAAVRLAPEVRRLPGEITDSGRPETLTLGKISVFFPVPDHGEVGLFELSTPCLDDWNLYSELFFNIVNTIEVTGRQTDMPAGEHSSADGPMALPQSPPPLPDPDPAVAQALFWYSSRLMDAAALRGQVHGGQQVESITCETCWAKGLRSACSARHGWYISSVVGSDLPHALPRAVASFTSRGWQAETESAGNRVRVCAGDEAPEQSAGYAFSASVDGEAGTFTAEVTAPCTRAAAADDSLFG
>CP029541.1|AWN27659.1|4152267_4152558_+|hypothetical-protein
MAADFKIDVERVQGMLNKLANADDRMRDAQQRLNKVGPKTLGTDGLDDACDEFQGQWGDGIKRIADAAKDIHEKLKMTLDAYKAGEEENAKMLGKK
>CP029541.1|AWN27658.1|4151360_4152002_+|hypothetical-protein
MSEVTFGITRNDAAKEFSALPGCEAWGILHPGRTGKIAPGPALARVHHHITSSEQQPAFTLTTAAEPAHTLCTIAPQAGAAAQQTVYAVHDGYGRFIGQVTHERSPRGMRQAWRIEDAGGQRSMTAYKGNIRGWIAYWAFSPFWALLALLNLLNGDTHSSWWLWGKPRRAHWRTRAGDGPRKPALDFKSGRYRADTGLLDANLIYAQAALYGA
>CP029541.1|AWN27657.1|4150680_4151316_+|hypothetical-protein
MTEITFCLSREEFAQQFTALPEHEAWGALQTGNGRIAAESPLARIHRLGGSDDHEPAFALTAAEPTHTLCTVTPQAGAAESHTAYTVHDGSGRFIGRIIHERSPLGIRQAWRIEDAAKQCSAVAYKGTIRGWIAYWAISPFWAIMALIFLLNGDVRPGGSLWSKPHRARWRMRAGGGPRKAALNFNTGRYRAGSGQLDMNLIHAQAVLYGA
>CP029541.1|AWN27656.1|4149691_4150375_+|TetR/AcrR-family-transcriptional-regulator
MAIDDSSTSGSKSKSSSAGTRRARRVRMTGAERREQLLDIGRTLFAERGYEGTSVEEIAAKAGVSKPVVYEHFGGKEGLYAVVVDREMRQLLDMVTGALTAGHPRELLEQAAFALLDYIETFTDGFRILVRDSPVAQSTGTFASLISDIATQVEDILGLEFKARGFDPKLAPLYAQALVGMVALTGQWWVDTRKPKKAEVAAHLVNLAWHGLGNLEAKPRLIGHRKN
>CP029541.1|AWN27655.1|4148662_4149670_+|acyl-CoA-desaturase
MTAGPEAVEDPPIPADSAVGPSAGTPSATLGGEQRRSLEQITLLLFITVPFVALVAAVPLAWGWGVSWLDLGLMVAMYYIGCHGITIGFHRYFTHGAFKAKRPLRIALAIMGSLAVEGPLVRWVADHRKHHKFSDAEGDPHSPWRFGETVPALMKGLWWAHIGWMFDEEQTPQQKYAPDLIKDSAIRTISRQFVLWTTVSLLIPPLVGGLVTWSWQGALSAFFWGSLVRVALLHHVTWSINSICHAVGKRPFKSRDRSGNVWWLAVLSCGESWHNLHHADPTCARHGVMKGQLDSSARLIRWFEKAGWAYDVRWPDASRLDARRAEKAAGGASRR
>CP029541.1|AWN27666.1|4160514_4161285_-|DNA-binding-response-regulator
MQRIRVLVVDDHRIFAESLAAALAAEQDVDVAAAGSAPAALRNLDRAATDGHRFDVLLADADLAAPLLAVPAQGAARDTVPRAVPRDGIALVSGLRTSHPYLRTVVLADRDDPRRAAAALQAGASGWVAKDCSLSRLLAVIRGVLRDETHLPPALLTGVLRELTAARKHRSESERLVESLTPREREVLRCMVAGLGRKAVAERLFLSPHTVRTHMQNVLGKLGVHSTLAAVALARRAGVGPVELEAAAAAASVPVP
>CP029541.1|AWN27667.1|4161555_4162791_-|galactokinase
MTAHGTAAPATGRVRHTAGQFAAVYGAAPTGTWAAPGRVNLIGEHTDYNDGFVMPLALPHTTLAAASARTDGVLRLHSGGADGGIVALRLDELRPWPETASGALETSRGGAQRSGGWAAYPAGVVWAMREAGLPVGGADLHFESTVPTGAGLSSSAALEVVTALALNDLYALGQEPQRLAQLAQRAENAFVGVPCGIMDQTAAACCAEGHALFLDTRDLTRRQVPFDLAGEGLRLLVVDTRVKHELGDGAYAERRAGCERGARALGVPALRDVPYAQLPEALSGLAGDPVVQALVRHIVTENHRVEEVITHLDAGRTRAIGPLLTAGHASLRDDFKISCPELDLAVDSALAAGALGARMTGGGFGGSAIVLVEEADATAVSAAVTEAFAAAGHAAPRIFEAVASAGAHRVE
>CP029541.1|AWN27668.1|4162790_4163765_-|UDP-glucose-4-epimerase-GalE
MSKKYLVTGGAGYVGSVVAAHLLQAGHEVTVLDDLSTGHREGIPAGAHFIEGRIQDAAKWLDPSYDAVLHFAAFSQVGESVVDPEKYWRNNVGGTMDLLAAMRDAGVRTLVFSSTAATYGEPASTPITESAETAPTSPYGASKLAVDHMISGEAAAHGLAAVSLRYFNVAGAYGSCGERHDPESHLIPLVLQVAQGKRAAISVYGEDYPTPDGTCVRDYIHVADLAEAHLLALDAATAGEHLICNLGNGNGFSVREVIETVRKVTGHPVPEVAAPRRGGDPAVLVASAQTAVDRLGWRPARADLAGIVADAWEFAQHLERTKES
>CP029541.1|AWN27669.1|4163761_4164880_-|galactose-1-phosphate-uridylyltransferase
MKKTTTRLADGRELIYYDLRDDAVRDERDHRPLDPVATASEIRHDRLLGDSVAIASHRQARTYHPPADECPLCPSRDGRLSEIPAPDYDVAVFENRFPSLAGDSGRCEVVCFTPDHDASFADLSEEQAALVLEAWTDRTAELSQLPGVEQVFCFENRGAEIGVTLGHPHGQIYAYPFITPRTERMLTSLAAHREATGGNLFDDTVADELADGRRIVLEGEHWVVFVPYAAHWPYEVHLYPKRRVPDLLALDEAARTEFPQIYLEVLRRFDRIFVGRDCGKEAGRDGGEEGEGASRGLRAAGAARTPYIAAWHQAPLRAGRREDFALHLELFTIRRTSGKLKFLAGSESGMNVFINDVPPEAAAERLREVASE
>CP029541.1|AWN27670.1|4165102_4166773_+|Na+/galactose-cotransporter
MITLAEGLRLPTNGLDYTILALYFVVVLGIGFAAKRSVKTSLDFFLSGRSLPAWVTGLAFVAANLGATEILGMAANGAQYGAYTVHWYWIGAIPAMVFLGLVMMPFYYGSKVRSVPEFLLHRFGPSSHLLSSVIFAVSSVLIAGVNLYAMAIVLQALLGWPQWVAIVVAGFFVLAYITIGGLSSAIYNEVLQFFVILAALIPLTVVGLKRVGGWDGLTDSLTSSHGDAFLTAWKGTGIGEGNPLGANWLTIVLGLGFVMSFGYWTTNFAEVQRALSAKNLSAAKRTPLIAAFPKIFIPLVVVVPGLIALVMEPTLGKSKDGLQYNDAIPVLMRDLLPNGVLGIAVTGLLAAFMAGMAANVSSFNTVFTNDIWAAYLKKGREDAYYLKTGRVVTAVGVLTGMGTAFIAASFSNIMNYLQTLFSFFNVPLFVVFIIGMFWKRTSAAAGFWGLLSGTVAAMVNYFWLYKQGIIAIPSDQGANFVSSIVAFVVGALVMFVVTMVTKPKPVESLAGLVYGTRSPGMEELPAEGDDAWYRKPALLGWGAIVLAALCYIPFSL
>CP029541.1|AWN27671.1|4166803_4167112_+|hypothetical-protein
MSDYQHEVAELERESATAARLFDVRRIIGGLFVVYGVIVTIAGVMATEADLKKAQNININLWTGLGMLALGLFFLVWMKLRPAVPPTAEELAEESGGGAGEG
>CP029541.1|AWN27672.1|4167176_4167899_-|helix-turn-helix-transcriptional-regulator
MGVRLMVVDDHRLLAEALASALKLRGHRVLAAAAPSAGAAELVVSRAPEVCLLGTAAPARPGAFDPVVRIKKERPQVAVVVLGPVPSPRGIAAAFAAGASGYVRNDERIEGVERAMMKARAGESAVSPQLLQQDFEELLHPAAQPDDEGARLLELLTPREVEVLMRVADGEDTRLIAAGMDIAPSTARTHVQRVLMKLEVGSRLEAAALAARTGLLDRAGGRGGRGVAGAGPDEPVLPPR
>CP029541.1|AWN27673.1|4168386_4168818_+|hypothetical-protein
MSLADEVAAAHAGNPNPAALVGEFRRTPVLIPLINDSLMSAELSGIRWLYAFSDEHELARFAMSRGAAPETELSYARAVGARLLDVVIPAIEGPAGVVLDAGSEQGMVFPPVSGIVPDSAAIDLIEPGQADSGPGAPVAGGAA
>CP029541.1|AWN27674.1|4168814_4169432_+|hypothetical-protein
MTSAEGYELDPTALKQVTKGIHDSIAELKELGFDTNAQLGQGFDKLALSGMESGHAGMSSVFDDFCERWGWGVRLLIHEANEFARRLDLTAGLYHEQEQYVSTTLKVGANALLMGDPTMTEEQLKHRTWKQVRDDNAITQFDDADWDPNSARSRKAFQEVDQAAQQTGEDFATSKWAGDKDHNWALRPFQDDRDAPAQANDHNGS
>CP029541.1|AWN27675.1|4169496_4174263_+|type-IV-secretion-protein-Rhs
MGLGDLINSAAEKAGNAVDGVKEAAGEAVDSATDMTADALDYVGADGAAKTVRSAGDDVADALGAQVAERQLGESDDPKELIHGDVAKINESAAHLKDFYAAFERVGQGIRKLDAGSWKGKAADSFHEKFDVHPKQWMRTADACEAAWKALDSYADTVSWAQKKAQAAIDAWRAAEKKTMKAFKAYSHAVDTYNAKADAYNAARDEGSDPGPKPDKPGDFHDPADQDREAAQDILKNARTQRNEAAEKAQHALKNALEHAPQAPKFTTETALDAADGIAAGGMNLMHVVGGVGKALVETVNLGRMVNPLEPYNLAHPHQYMANVSKITLGLASTAAHPGRLAKGMLGEGWGSDPGDALGGFIGNLIGAKGVGAVGKGAMKAGAKGAAKGAAREAAKEGGKRTVMDRARTAWCKTFGNDPIDMATGRMILPQTDVTLPGSLPLSFTRTFESSYRTGRWFGPTWMSTVDQRLEIDAEGIILIGEEGNFLLYPHPAVGVPTLPTEGDGHPLERTPDGDYLLTDPVTGIRRYFTTYTEDLAVLDEISDRRGNHHTFDYTEDGTPTAITHSAGYRLLLTAEEGRITALHLAGAAPDGSDQLLMTYGYDTVGNLITTTNSSGLPLRFTYDDHGRITSWTDTNNSSYTYVYDDDDRCTSQGGIAGHLRAQFTWGDPDPVTGLRTNLLHNSQGGVTRYEVNERHQIVAETDPTGATTRTVRDAKHRILSTTDPLGRTAHFTYDDEGRPVSVVLPDGSRSTTTYNDLGLPLTTTGPDGTTWTHTYNADGNRTATTDPTGATTTYTHDERGHIAAVTDALGNITRLYCDKAGLPISVTDPLGAVTHYRRDAFGRTTSVTDPLGETTHMVWTVEGKLAARIDATGATEEWTYDGEGNRLTHTDAIGQTTRFEYGHFDLLTARTDPDGVRHEFTHDTELRLTQVTNPQGLTWNYTYDGSGRLISETDFDDRVLAYTHDAAGQLATRTNTLGEVTTYSRDTLGRITEKNAAGLITTYEHDTGGSLRQAANPDATVTYTRDILGRVTAETVNGRTMTFTYDALGRRTSRTTPTGHTTTYTYDAAGNRTAMDVAGHVLTFDHDAAGQELTRTIGDLLQLAHTWDPTGRLTGQSLTTAATGTLQSPTGTAQSPNLTAEAQRLFHRGYTYRPDGNLTAIDDSHTGRRTFGLDRAGRVTAVHATDWTETYAYDEAGNQTHATWPDRHASPSARGDRTYTGTRITKAGAIRYEHDDLGRVTLRQKTRLSRKPDTWRYTWDSEDHLASVTTPGGTVWRYEYDPLGRRTAKERLAHDGISILERADFTWDGTTLVEQVTYIPGESKAISLTWDHQNLTPITQSERKLRLQVGGNATPPDLSSCPQALIDERFFAIVTDLIGTPTELIDETGAIAWHSRTTLWGTTTWHHAATAYTPLRFPGQYLDPETQLHYNYFRHYNPEMGRYLSPDPLGLDPAPNPLTYVDNPQNSVDPLGLSPCLREAWERKADFSSQKVMSKKYHAHANDFLDSPGNLNGANLKKFEQSMRDHMTAEGTKMYRFNYRNQGPAVGFIDPMDGNKMVMLRANGKFWSAWKLGDGQFRDIIDNGRLW

Crispr_ID: CP029541_11

• CRISPR_ID: CP029541_11
• CRISPR_location: 5092783-5092898
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_11

Consensus_repeat	Method
ACGCCCGAATCGGCCCCGGCTCCGGC	CRISPRCasFinder

spacers of CP029541_11

>11.1|5092809|64|CP029541|CRISPRCasFinder
GCCCGAATCGGCCCCGGCTCCGGCTCCGCCCCCGGCCTCAGCCGCAGCCCCGCCTCCGCCCCCG

CRISPR arrays and Neighbor proteins around CP029541_11

CRISPR arrays

The CRISPR arrays of CP029541_11

>merge|CP029541|11|5092783-5092898|CRISPRCasFinder
GTGCCGGACACGGCCCCGGCCCCAACGCCCGAATCGGCCCCGGCTCCGGCTCCGCCCCCGGCCTCAGCCGCAGCCCCGCCTCCGCCCCCGACGCCCGAATCGGCTCCGGCTCCGGC

>CP029541|11|11|5092783-5092898|CRISPRCasFinder
GTGCCGGACACGGCCCCGGCCCCAAC	GCCCGAATCGGCCCCGGCTCCGGCTCCGCCCCCGGCCTCAGCCGCAGCCCCGCCTCCGCCCCCG
ACGCCCGAATCGGCTCCGGCTCCGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN28390.1|5083921_5084821_+|zinc-metalloprotease-HtpX	unknown	unknown	gnl|CDD|179418
CP029541.1|AWN28391.1|5084886_5085450_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN28386.1|5076059_5079743_+|ABC-transporter	unknown	unknown	gnl|CDD|274323
CP029541.1|AWN28392.1|5085480_5086023_-|RNA-2'-phosphotransferase	unknown	unknown	gnl|CDD|179136
CP029541.1|AWN28387.1|5079956_5081636_+|histidine-kinase	unknown	unknown	gnl|CDD|226951
CP029541.1|AWN28401.1|5102914_5103229_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN28399.1|5098025_5098838_-|endolytic-transglycosylase-MltG	unknown	unknown	gnl|CDD|381750
CP029541.1|AWN28398.1|5096232_5097144_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
CP029541.1|AWN28396.1|5093026_5093893_-|Xaa-Pro-aminopeptidase	unknown	unknown	gnl|CDD|376349
CP029541.1|AWN28393.1|5086848_5087439_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN32200.1|5094136_5095192_+|ABC-transporter	unknown	unknown	gnl|CDD|224054
CP029541.1|AWN32201.1|5097223_5097943_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|224196
CP029541.1|AWN32199.1|5086105_5086708_-|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609
CP029541.1|AWN28394.1|5087435_5088785_+|9-cis-epoxycarotenoid-dioxygenase	unknown	unknown	gnl|CDD|226196
CP029541.1|AWN28397.1|5095196_5096108_+|hypothetical-protein	unknown	unknown	gnl|CDD|372253
CP029541.1|AWN32202.1|5100546_5101257_-|GntR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|225097
CP029541.1|AWN28389.1|5082793_5083693_+|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|274648
CP029541.1|AWN32203.1|5101459_5102743_-|diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|143501
CP029541.1|AWN28388.1|5081708_5082638_-|hydrolase	unknown	unknown	gnl|CDD|369792
CP029541.1|AWN28400.1|5099193_5100465_-|MFS-transporter	unknown	unknown	gnl|CDD|340897

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN28390.1|5083921_5084821_+|zinc-metalloprotease-HtpX	gnl|CDD|179418	PRK02391, PRK02391, heat shock protein HtpX; Provisional.	5.86291e-167
CP029541.1|AWN28386.1|5076059_5079743_+|ABC-transporter	gnl|CDD|274323	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD.	0
CP029541.1|AWN28392.1|5085480_5086023_-|RNA-2'-phosphotransferase	gnl|CDD|179136	PRK00819, PRK00819, RNA 2'-phosphotransferase; Reviewed.	2.25657e-96
CP029541.1|AWN28387.1|5079956_5081636_+|histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.41962e-28
CP029541.1|AWN28399.1|5098025_5098838_-|endolytic-transglycosylase-MltG	gnl|CDD|381750	cd08010, MltG_like, proteins similar to Escherichia coli YceG/mltG may function as endolytic murein transglycosylases. The gene product of Escherichia coli yceG/mltG has been erroneously annotated as an aminodeoxychorismate lyase. Its overexpression has been reported to cause abnormal biofilm architecture, and it has been reported to be part of a putative five-gene operon. More recently it has been proposed to function as a terminase for peptidoglycan polymerization. The family also includes Streptomyces caeruleus NovB, an uncharacterized member of the novobiocin biosynthetic gene cluster.	5.45586e-83
CP029541.1|AWN28398.1|5096232_5097144_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.62667e-74
CP029541.1|AWN28396.1|5093026_5093893_-|Xaa-Pro-aminopeptidase	gnl|CDD|376349	pfam00557, Peptidase_M24, Metallopeptidase family M24. This family contains metallopeptidases. It also contains non-peptidase homologs such as the N terminal domain of Spt16 which is a histone H3-H4 binding module.	2.80961e-23
CP029541.1|AWN32200.1|5094136_5095192_+|ABC-transporter	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.02487e-82
CP029541.1|AWN32201.1|5097223_5097943_+|ABC-transporter-permease	gnl|CDD|224196	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only].	3.79476e-05
CP029541.1|AWN32199.1|5086105_5086708_-|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.40284e-11
CP029541.1|AWN28394.1|5087435_5088785_+|9-cis-epoxycarotenoid-dioxygenase	gnl|CDD|226196	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	7.10188e-124
CP029541.1|AWN28397.1|5095196_5096108_+|hypothetical-protein	gnl|CDD|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	6.28694e-06
CP029541.1|AWN32202.1|5100546_5101257_-|GntR-family-transcriptional-regulator	gnl|CDD|225097	COG2186, FadR, Transcriptional regulators [Transcription].	2.10047e-50
CP029541.1|AWN28389.1|5082793_5083693_+|LLM-class-flavin-dependent-oxidoreductase	gnl|CDD|274648	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by Rv1855c from Mycobacterium tuberculosis. [Unknown function, Enzymes of unknown specificity].	2.58811e-40
CP029541.1|AWN32203.1|5101459_5102743_-|diaminopimelate-decarboxylase	gnl|CDD|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	2.11148e-162
CP029541.1|AWN28388.1|5081708_5082638_-|hydrolase	gnl|CDD|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.40759e-59
CP029541.1|AWN28400.1|5099193_5100465_-|MFS-transporter	gnl|CDD|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.58992e-121

Protein sequences

>CP029541.1|AWN28394.1|5087435_5088785_+|9-cis-epoxycarotenoid-dioxygenase
MTPTSPTTASASHAPAPHMAGNFAPVADELTAYDLPVTGAIPPGLSGWFLRNGPNPRDAATPHWFFGDGMVHGLRLEGGRAVSYRNRWVRTTTFTEGARPVDAQGRRNLTAGVANTHIVRHAGRTLALVESSFPYEIDCRPGHELETIGAHDFGGRLTTAMTAHPKTCPTTGELHFFGYGGPTPPYLTYHRADAAGELVISRPIDVPGHTMMHDFHLTAGHVIFMDLPVVFDRSRPGMPYHWNPEYGARLGVLRRDDPYGEVRWLPIDPCYVFHALNAHDEGDQRIVLHVSRYADYGGQASAHLWRWTIDLATGTVAEEQLDDQFCEFPRVDDRLAGQHARFGHATIGELPGTGPIPGALIRYDLQTGEAVRHDFGPGRTPGEAVFAPADDRPGGPGWLLTYVYDASTDTSDLVVLDSEDISADPVATVHLPQRVPFGFHGNWLPDPDR
>CP029541.1|AWN28393.1|5086848_5087439_+|hypothetical-protein
MNYLRGFIPWLVFAGVSPAGWQWGALAGLAAAVALLIADRAAGLALDLRLLEYGTIVFFAALAVLAFARPESGLKMYGSALSMGWLALIAWVPIAVRRPFTSGIARGMAPPEVWHTPLFQRINVVLTAAWALSFTLTALAQAAASAYGWNVAFSILIQLAGFVLPARFTATYPERARARLMETSGARADIQGGLAS
>CP029541.1|AWN32199.1|5086105_5086708_-|PadR-family-transcriptional-regulator
MSLRHAVLGLLAESPASGYDLMKLFNASLASVWPATQSQVYGELGKLTTAGLVEVAAHGPRGRKEYAITEDGLTELRHWLTDIEPSGPQRHDGLLRVFFLGIVTPLEAQTYLLHQAERAARARAELEHLDETAEWDEEMISVYGRIALEYGLRISAMQEEWARWAADEVTSAKARKASELARGQHKGQGLHAEGSAGERE
>CP029541.1|AWN28392.1|5085480_5086023_-|RNA-2'-phosphotransferase
MNDQRSVRLSKYLAKHLRHEPERIGITLDAQGWVPVAELMAAAARHGFPFTRAELATVVAGNDKQRYAIDGDRIRANQGHSVPVDLDLPPAVPPAHLFHGTVARSVAAIRDEGLRPMSRHAVHLSPDRETATRVGARRGKPVVLTVDAGAMHRAGHVFRVSANGVWLTSRVPAQFLRFPD
>CP029541.1|AWN28391.1|5084886_5085450_+|hypothetical-protein
MGFLDAILGRSKPVRPDLDQLFALPSAAVTLQAAAGFEPTGLGSVCFASVEGGAFARIQEEARSLLDGSVEFTQDAYGYTWLLVRHPPEDVAGLVNDLHAVNTSLEEAGFGPQLLCSLVGFRDDQQRSLALVYLYKRGTFYPFAPQRDGGEKRDNPLELQVRAMLGDDLTIEKDLARWFPVWGAPGL
>CP029541.1|AWN28390.1|5083921_5084821_+|zinc-metalloprotease-HtpX
MAQTRFAPDRGLTSRMVMTMFFIGLLYVVVVGVLVVLLKGAWVVVLLIAGALFVAQFWFSDRIAAFSMGAREVTPEQAPELHGAVDRLCALADMPKPRVAIAESDVPNAFATGRGQKNSLVCATTGLLRRLEPAELEGVLAHELSHVAHRDVAVMTIASFLGVLAGIITRAALWSGIGRNNRDQNTAIAVLIVTAVSVVVYAISFLLTRLLSRYRELSADRAAALLTGRPSALAAALTKVTGQIARIPTEDLRKAQPFNAFYFAPAFNKESFSRLLSSHPTLEQRLDQLGRIAAELGRA
>CP029541.1|AWN28389.1|5082793_5083693_+|LLM-class-flavin-dependent-oxidoreductase
MRLSTLILPVRRWSEGGREVWQRAEELGFHAAYTYDHLSWRSFRDQTWFGALPTLTAAASVTSRMRLGTLVTSPNFRHPVTLAKELISLDDISDGRITLGVGAGGNGFDATALGQEPWAPRERADHFDEFVALLDRLLSQDVVSHEGAHYSAHEVRNIPGCVQRPRLPFAVAATGPRGLKLAARYGQAWVTTGDPKVSNGGGTPAESREAIRGQLERLGKACADQGRDVADLQKIMLTGFTPDRPLDSVDAFVDFAGRHAELGIDELVLHWPIADSLFEADVAVFERIATEGAAQLAAR
>CP029541.1|AWN28388.1|5081708_5082638_-|hydrolase
MTDASAPPSRAPETAVAPRLIATDLDGTLLHDDKTVSDRTIAALAAAERAGLEVFFVTGRPARWMGVVSDHVHGHGLAICANGAAVVDLHRGGRIVEVSPLERTTARQIVDALRSAAPGTSFAVERTGGIHYEPQYPPLLLDPAAVVAPAEKLLADDFVPPLGPEETEADGPAGGTDRPAFPDQPVIKLLAHHPELDPDAFLTLARTAAGGLATFTRSSPTALLEISGPGVSKAGTLARCCAERGIAPDEVVAFGDMPNDIAMLSWAGTSYAMANAHPDVLAATTRRTASNNDDGVAAVIERILQDSHL
>CP029541.1|AWN28387.1|5079956_5081636_+|histidine-kinase
MDAATEATRSLRGLSSELTARVPQLLEAMRTVGAGLDLHVTLDRIVETAAELADARYAAIGIIDEAREGLSDFVTYGVTAQQHERIGALPDGHKGLLGALIHDPKPLRLDDLTKDARSAGFPPGHPPMRTFLGVPIRVQGDIFGNLYLTEKRDGGVFSEEDLHMVRVLATEAGIAIGNARLHAATRQRERWIDGSVAVTTELLAGSDVDDALAVVAEQARKLADSAAGIVLLPDEEGGLEIVAVSADEPAGIMGTQIPTDSPVVEQLLAGEPVFVDDSATDPRMVTDIAQRFGPSMMLPLKSGGRVLGTLATPRARGARPFTGAERTLATQFAAQAALALVLADAQRDRERLAVYEDRDRIARDLHDLVIQRLFATGMMLESAQRRTVVPEVAHGVGKAVDELDVTIQEIRTAIFALQQGPAEAPSGLRTRVLREIGTAAVPLGFQPSASFVGPVDSRVGELTGKNLIAALREALSNAFRHAQASRIEVVVDATVRLPDGTDGVRLTVADDGIGIPDGGRRSGLRNLANRAEALGGSSTYGPGLGEGGTGTMVQWEAPL
>CP029541.1|AWN28386.1|5076059_5079743_+|ABC-transporter
MFHVKPVDPRLLRYAHATRGFLIAVVVLGLAGAGLVVGQAMLIAEVVVGAFQHDLAVSALTTPLMLLAAVSVGRGLVSWLTELAAHRAGAAVKSELRIRLIERAARLGPGAVIGRTDGAAQVPDAYGAEAAGAGAAAGTLEMRTGELTALATRGIDALDDYFARYLPQLGLAVVVPLAVLARIVTGDWISALTIVITLPLIPLFMILIGWATQSRMDRQWRLLARLSGHFLDVVEGLPTLKVFGRAKAQAASIRSITGEYRRATLRTLRIAFLSSFALELLATISVALVAVGIGMRLVHGELDLYTGLMVLVLAPEAYLPLRQVGAQYHAAAEGLSAAEEIFAVLETPLRTPGTAPAPRGTALAVEELVVRHPGRSADSLPATSFEVRPGETVALVGPSGAGKTTLLSVLLGFTEPSEGRALVDGRDIASLSPESWRQRIAWVPQHPHLFAGTIAENVRLARPDADDAAVRTALGDAGALDFVDALPDGAATRLGESGAGLSAGQRQRLALARAFLADRPILLLDEPTANLDGATEEAVVAAVRRLAAGRTVLLVVHRPALLAVADRVVRLPDPAAGDGLTGAPSAVRRAAADASVAARPETAGDSASGEGGSAGAAAVDLASDAALDTSRDSARGAALTRLRRLARAHRAQFAWALLLGSLALGSAVGLMATSGWLISRAAQQPPVLYLMVAVTATRAFGIGRAVFRYAERLVAHDAVFRMLAEVRVAVFRRLERLAPAGLRERSRGDLLSRLVADVDAVQDYFLRWLLPVGAAVLVGAGAVGFTGWLLPEAGAILAAGLLLTGVGVPALSGALARRTERRLAPARGRLATRVVEMLTGTAELTVAGALGARTESVRCADRDLTRIASRSAAVAGTGAGLSALLCGLTVAASAVAGVQAVQTGRLTGVALAVVVLTPLAAFEAVTGLPLAVQYRRRTRHAAERVFEVLDAPAPVSEPVTPAPAPGTPFPLAVRELTARHPGQDRPALDGVGFTLTAGHRLAVVGASGSGKTTLAQVLLRFLDGESGTYTLGGTEAREMAGDAVRRLVGLCAQDAHLFDSSLRENLRLARPDGRGAGDDADQDLWDALARARLADWVRGLPAGLDTMVGERGARLSGGQRQRLALARALLADFPVLVLDEPAEHLDLATADALTADLLTATEGRTTVLITHRLTGLDAVDEVLVLDRGRAVQRGTYAELAAADGPFRRMLERERAVDAAYGEAQPVA
>CP029541.1|AWN28396.1|5093026_5093893_-|Xaa-Pro-aminopeptidase
MASVTSATPPGAGELTAGLRGFREVQRLAYACAEAVAAQLKPGVTERAAARMQREWLRERGVRDWFHLPFAWFGDRTAFANFRVPLQFFPTHRELEPGMAFILDMAPIHNGYTADIGYSGCLGLNPVHDRLLADLEAHRELILREVRERRPLREIYEDVDRLMVRQGYANRHRAYPFGVIAHKVDRVRQRRWSPTLFGFGTRSLRGLASDALHGHRDGWSPLWSPYSFSDHPPQPGLWAVEPHLGFRGTGAKFEEILVVTDSKDPQESAFWLDDDLPHVRRWQEEKAA
>CP029541.1|AWN32200.1|5094136_5095192_+|ABC-transporter
MAGTTTVDDVTVIVTESLSKRFPRVTALDRLSVDIAPGVTGLVGANGAGKSTLIKILLGLAPATEGTAHVLGLDVTKDGGTIRERVGYMPEHDCLPPDVSATEFVVHMARMSGLPPTAARERTADTLRHVGLYEERYRPIGGYSTGMKQRVKLAQALVHDPQLVFLDEPTNGLDPAGRDEMLGLIRRVHTDFGISVLVTSHLLGELERTCDHVVVIDGGKLLRSSSTDEFTQVTASLAVEVTDTDAHPDGTEALRAALAAAGAAVTTRAAGSEGFAASGHLLYVEAAGEETYDLVRDTVARLGLGLVRMEQRRHQIAEVFRDADAAQAAPATAGAPSAPYATQDGGAHDVA
>CP029541.1|AWN28397.1|5095196_5096108_+|hypothetical-protein
MTSAHPTSPDAAPGGAYIHNIGYRHYDGPRLGRAYARRSLFSQSLRGAFGLGRSAKSKVLPMLLFAVMCLPAAIMVAVTVVTKAGALPVGYSRYAVYLQVVIGLFLAAQAPQSVSRDLRFKSVPLYFSRPIERVDYVASKFAAMAAALFILTGVPLLILYIGALLAKLDFLDQTKGLGQGVVAVVLLSLLFAGVGLVVSAVTPRRGFGVAAVIAVLTIPYGAVSAVQGIAFIQGNESAVGWLGLFSPITLIDGVQSTFLGGSSSFPNGLAPTTSAGFVYLLVTLAVIVGCYGLLMRRYRKAGL
>CP029541.1|AWN28398.1|5096232_5097144_+|ABC-transporter-ATP-binding-protein
MTTLHIDHVSRWFGNVVAVNDITMTIGPGVTGLLGPNGAGKSTLINMMGGFLAPSNGSVTLDGTTIWRNAGIYRHIGIVPEREAMYDFLTGREFVLANAELHGLGRAEAARALATVEMEYAQDRKISTYSKGMRQRVKMASALVHDPSVLLLDEPFNGMDPRQRMQLMELLRRMGAEGRTVLFSSHILEEVEQLAAHIEVVVAGRHAASGDFRKIRRLMTDRPHRYLVRSDNDRALAGALIADPSTAGIEVDLAEGALRIQAVDFGRFTELLPRVARDHGIRLLTVSPSDESLESVFSYLVAA
>CP029541.1|AWN32201.1|5097223_5097943_+|ABC-transporter-permease
MFHPTVARLTYRALLGRRRALILFALPALLVVLAVAVRVLAGADDATAGGILGGFALGTMVPLIGVIAGTGAIGPEIDDGSVVYLLAKPVSRPSIIFTKLLVAIGVTVAFSALPVLLAGFLLNGNSQQMAVGYAVAAAVASVAYSALFLLFGTITRHAVVFGLVYALIWEAFVGTLISGAKTLSIQQWALAVGQKVAAEGALTSEVQLPLAVCLLVGLTGAATWYAARRLKALTLSGEE
>CP029541.1|AWN28399.1|5098025_5098838_-|endolytic-transglycosylase-MltG
MSDASPTVRRPGPRLSRTGRLVLVAVLLVLVALAVLLLPRLLRGPQPEQTLTVPEGQRATQIYAAADKALHLPAGSTAKAAKRAHLPLPAEAKGNPEGYLFPATYPISSDTTPASLLSYMVKTAKQRLAADKIASYRTVLIASIVQAEADRPADMGKVARVIDNRLAHRMPLQMDSTINYALGRSTLHTSHADTRTKSPYNTYRYPGLPPTPIDNPGADALKAAGAPPAGDWLYFVTVKPGDTRFTADYQEHLRNVREFNARHRSAGSGA
>CP029541.1|AWN28400.1|5099193_5100465_-|MFS-transporter
MAGPRAEAPLIDAEEDLVATPPVAVARRRLRAHPALVMTGIVLAALNMRAALAGVSPLLGEIGAHFRLTATASSLVTTIPLIFMGLGSIAAPKLARRWGTETALCAALVALCGGIVLRIAPPVVALFAGCAVVGSSIALLNVLMPGLIKRDFPERAAGMTALYSTAMILGATVSAASAVPMEHALGGWQGALVSWALLAAVAAVVWIPQTLMARRGTRHGAAAATPAHLTEDGPRLSRSPLAWQVTLFMGSQSLIAYVAIAWMPTIFTDHGMGKGEAGLVFAFSTLVQMAGSFVVPMLAGRMRQQRLLAVAVTGLMACGITGLLVAPVAGAWLWAALLGIGQGGALGLALTMMVLRSGDAHTAARLSGMAQTGGYLLAAAGPLVLGAVHQATDGWTVPLVLLLTVCAGLALLGMGAGRDRRIG
>CP029541.1|AWN32202.1|5100546_5101257_-|GntR-family-transcriptional-regulator
MALQAAGRQSLVDTVVDALRSQLTAGEWKVGSRIPTEHALAEQLQVGRNTVREAVRVLVHAGMLRSRQGEGTFVVSTADPGDIMRGIQRAGIRDVLELRIALEAEAARLAATRHRPDDLERMRAALDAQAELADAEGLPDPGSLELYADHDIAFHKAVVEAAHNTALTATYDWFSSSVREALVSALDDQAMPRIVHGDHRAVMEAIAAGDPEAAERATRALLDKPKRAVEALLAAR
>CP029541.1|AWN32203.1|5101459_5102743_-|diaminopimelate-decarboxylase
MWPASAAPVGQDDLAVGGVPLTELADRFGTPAYVLDEDEVRHRCRAYLRAFPDTEVYYAAKAFLCRAMVHWVQEEGLGLDVCSAGELELAVTTGFPPERIVLHGNAKSPADLRTALRLGVGRIVIDSTSEIARLAVAVPAGSRQKVLVRVVPGIAAGGHAKIRTGTDDQKFGLSIADGSAQHAIARVLSQPRLELVGLHCHLGSQITTVKPYLSAVRRLIGLLARIREHHGITLPELDLGGGHGVAYRPGELALDLASLGTKIRAELAGGCAAAGLPVPRLAIEPGRAIAGPAGVVLYRVLSVKRTGAHTFVAVDGGMSDNPRPALYGVRYAPRLVGRASAAAPEPVTVVGRHCEAGDVLAADTQLPGDIRPGDLLAVPVAGAYHLSMASGYNLVGRPPVIAVTDGHARLLVRRESLADIQERDIGL
>CP029541.1|AWN28401.1|5102914_5103229_-|hypothetical-protein
MSHHLYAEDPEPADRVPAGPLFVPVRSGPAGCTARLFRTPLGGRTAVAFTSPQLLAAALGGGQPWVRLSEPALRALAEPVGATVLTVDPRFVPDIPRGHHLRAV

Crispr_ID: CP029541_12

• CRISPR_ID: CP029541_12
• CRISPR_location: 5591792-5591893
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_12

Consensus_repeat	Method
CTCTCGTCCTGAGGAACGGGCCC	CRISPRCasFinder

spacers of CP029541_12

>12.1|5591815|56|CP029541|CRISPRCasFinder
CGGCCGTCGGGGCGTTGCCCATTTCCCCCGTGTCCGTCTGGTGTGGAGGCGTCCCA

CRISPR arrays and Neighbor proteins around CP029541_12

CRISPR arrays

The CRISPR arrays of CP029541_12

>merge|CP029541|12|5591792-5591893|CRISPRCasFinder
CTCTCGTCCTGAGGAACGGGCCCCGGCCGTCGGGGCGTTGCCCATTTCCCCCGTGTCCGTCTGGTGTGGAGGCGTCCCACTGTCGTCCTGAGGAACGGGCCC

>CP029541|12|12|5591792-5591893|CRISPRCasFinder
CTCTCGTCCTGAGGAACGGGCCC	CGGCCGTCGGGGCGTTGCCCATTTCCCCCGTGTCCGTCTGGTGTGGAGGCGTCCCA
CTGTCGTCCTGAGGAACGGGCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN28766.1|5581915_5582626_-|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|223816
CP029541.1|AWN28769.1|5585762_5586470_+|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl|CDD|226310
CP029541.1|AWN28782.1|5601610_5602423_+|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl|CDD|224007
CP029541.1|AWN28771.1|5587477_5588287_+|hypothetical-protein	unknown	unknown	gnl|CDD|215598
CP029541.1|AWN32245.1|5583497_5584049_-|SigE-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|132028
CP029541.1|AWN28774.1|5591911_5592613_-|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|225107
CP029541.1|AWN28780.1|5599549_5600422_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN28783.1|5602419_5603070_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380054
CP029541.1|AWN28779.1|5597746_5599498_+|hypothetical-protein	unknown	unknown	gnl|CDD|223021
CP029541.1|AWN28775.1|5592895_5594224_+|flavohemoprotein	unknown	unknown	gnl|CDD|99784
CP029541.1|AWN32244.1|5578784_5580299_+|MFS-transporter	unknown	unknown	gnl|CDD|129794
CP029541.1|AWN28765.1|5580602_5581907_-|two-component-sensor-histidine-kinase	unknown	unknown	gnl|CDD|223715
CP029541.1|AWN28777.1|5594833_5595958_-|DNA-integrity-scanning-protein-DisA	unknown	unknown	gnl|CDD|237395
CP029541.1|AWN28772.1|5588761_5589736_+|reductase	unknown	unknown	gnl|CDD|187575
CP029541.1|AWN28768.1|5584456_5585416_-|A/G-specific-adenine-glycosylase	unknown	unknown	gnl|CDD|224115
CP029541.1|AWN28767.1|5582635_5583274_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN28778.1|5596083_5597496_-|DNA-repair-protein-RadA	unknown	unknown	gnl|CDD|236994
CP029541.1|AWN28770.1|5586662_5587247_-|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239489
CP029541.1|AWN28776.1|5594305_5594809_+|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl|CDD|378988
CP029541.1|AWN28781.1|5600499_5601426_+|Ppx/GppA-family-phosphatase	unknown	unknown	gnl|CDD|223326

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN28766.1|5581915_5582626_-|DNA-binding-response-regulator	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.971e-80
CP029541.1|AWN28769.1|5585762_5586470_+|pyridoxamine-5'-phosphate-oxidase	gnl|CDD|226310	COG3787, COG3787, Uncharacterized protein conserved in bacteria [Function unknown].	4.97145e-17
CP029541.1|AWN28783.1|5602419_5603070_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|380054	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in a number of different TetR transcription regulator proteins found in Actinobacteria. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain.	1.25612e-28
CP029541.1|AWN28771.1|5587477_5588287_+|hypothetical-protein	gnl|CDD|215598	PLN03138, PLN03138, Protein TOC75; Provisional.	0.00107644
CP029541.1|AWN32245.1|5583497_5584049_-|SigE-family-RNA-polymerase-sigma-factor	gnl|CDD|132028	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family. This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.	3.35915e-56
CP029541.1|AWN28774.1|5591911_5592613_-|DNA-binding-response-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.16578e-71
CP029541.1|AWN28779.1|5597746_5599498_+|hypothetical-protein	gnl|CDD|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	9.74487e-05
CP029541.1|AWN28775.1|5592895_5594224_+|flavohemoprotein	gnl|CDD|99784	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.	1.17384e-66
CP029541.1|AWN32244.1|5578784_5580299_+|MFS-transporter	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.33741e-73
CP029541.1|AWN28765.1|5580602_5581907_-|two-component-sensor-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.07618e-28
CP029541.1|AWN28777.1|5594833_5595958_-|DNA-integrity-scanning-protein-DisA	gnl|CDD|237395	PRK13482, PRK13482, DNA integrity scanning protein DisA; Provisional.	0
CP029541.1|AWN28772.1|5588761_5589736_+|reductase	gnl|CDD|187575	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1. Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.12219e-77
CP029541.1|AWN28768.1|5584456_5585416_-|A/G-specific-adenine-glycosylase	gnl|CDD|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	4.8961e-83
CP029541.1|AWN28782.1|5601610_5602423_+|sugar-phosphate-isomerase/epimerase	gnl|CDD|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	2.77746e-28
CP029541.1|AWN28778.1|5596083_5597496_-|DNA-repair-protein-RadA	gnl|CDD|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
CP029541.1|AWN28770.1|5586662_5587247_-|phosphatase-PAP2-family-protein	gnl|CDD|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	2.89957e-19
CP029541.1|AWN28776.1|5594305_5594809_+|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl|CDD|378988	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase. Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyzes the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several pyridoxamine 5'-phosphate oxidases, and related proteins.	1.18824e-21
CP029541.1|AWN28781.1|5600499_5601426_+|Ppx/GppA-family-phosphatase	gnl|CDD|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	4.0757e-80

Protein sequences

>CP029541.1|AWN28772.1|5588761_5589736_+|reductase
MLGGTEFVGRAVTEAAMARGWQVTVFHRGKHAAPEGVTSLHGDRGDAAGLAALKEGEWDAVVDTWSGAPSAVRDTARLLAGRVGRYAYVSSGSVYASPPSAPYGERAPLVTGSPDATDAADYAQAKRGGELAATEAFGDRALLLRAGLVLGPYENIGRLPWWLGRIARGGPVLAPGPRELALQYIDVRDLAVWTLDALEAGLGGAYNLVSEAGHATMGEFLESCVQATGADAELRWTAPEDVLAAGIEPWIELPVWLPPGEARDAVYSTDVSKARAAGLRCRPVAETVADTWTWLQSLGGVAPQRPDRPVVGLAAEREAAVLRG
>CP029541.1|AWN28771.1|5587477_5588287_+|hypothetical-protein
MGSLRNPIGPLPSSIYWRRRAVALAIVVLLALLVVWALNWGGDAGKSSDEGKGSQGNGPATSITPGPSASGPVNDQKPGGRDESGDDVGDEGSDSGSGGSGAAGGGSGSSGGGSGSGGGPIGQGSGKNAVSAGSSLPNCVSGKAELVLHSAKRSYAPGARPKFELTVENAAGAACKVDLGQKATVLTISDAAGDDRVWASNDCPSGTEPALLQVPAKGSVQRVIEWDRRASGPQCATPSSAKVPAGKYEIEAKVPGLEAARTTFVLAEG
>CP029541.1|AWN28770.1|5586662_5587247_-|phosphatase-PAP2-family-protein
MNSTTLYRDLTDLAHHSPDWLRTLAGLGTEGGLLLLMAMAVPVWWRARSHTARSVALAVLVPISSAVAYLLSELVKSLVGEERPCRAVAGAAASIAPCPPGGDWSFPSNHSTIAAALAVGLTLACRATLLLALPVALLTGLSRVFVGVHYPHDVLAGLTLGAAVAALCPALLARPTTALVTRMRTGRWRALVAA
>CP029541.1|AWN28769.1|5585762_5586470_+|pyridoxamine-5'-phosphate-oxidase
MAEMSGADDAGGEAGGEAGPGATAGPGGAAGSGATAGPGGAAGVAGPDCPEAIRRALAAHTTMTLAYVDEDGPQACAVLYAAGVASGAASGAEHGGAAGVEAGGPSGGASGVASGVAGAGAVGAGPALYFVTATSTRHGRALVEPGARVAFTAQRDGQEWSSLTGLQGRGRCRPLSGAERAAGWQVYVERFPFVTASDRLRAALERTTLWELRPDWLRLIDNGQGFGHKEEWSGR
>CP029541.1|AWN28768.1|5584456_5585416_-|A/G-specific-adenine-glycosylase
MTSTPVTTTATTAAAETASAADAAAEAADGTALHGPVTDWFDEHARDLPWRRPEAGAWGVMVSEFMLQQTPVSRVLPVYEQWLARWPRPADLAAEAPGEAVRAWGRLGYPRRALRLHAAASAIQERHGGDVPREHSQLLALPGVGEYTAAAVASFAYGQRHAVLDTNVRRVFARAVAGRQFPPNATTAAERKLARALLPEEEQLAARWAAATMELGALLCTARTPECHRCPIAAQCAWRQAGSPAHDGPPRRTQTYAGTDRQVRGKLLAVLREAVTPVPQQVLDAVWDEPVQRARALDGLVSDGLVEPLGGGRYRLPLT
>CP029541.1|AWN32245.1|5583497_5584049_-|SigE-family-RNA-polymerase-sigma-factor
MATSGGKVLDFEEYVRTRQEALLRSARRLVPDPVDAQDLLQTALVRTYGRWDGIADKSLADAYLRRVMINTRTEWWRARKLEEVPTEQLPDASVDDGTEQRADRALLMDILGVLAPKQRSVVVLRHWEQMSTEETAAALGMSTGTVKSTLHRALARLRQELQMRDIDARMLERGERERERCAA
>CP029541.1|AWN28767.1|5582635_5583274_-|hypothetical-protein
MTRGGAATAGVAAVGLLLAGCNPGGEGVRSEGSASSTPAPKGPVSSSPSPASTADYKKVDAVQLLKDDPKVGPMVKKSLYKPCAADEYPVEVTYASLTGSKSPDVIVNVMTCADSVGIGSYVYRKRSGAKGGYDNVYTNEQPSVSAAVNKGELEVSKQTYDTGDKVCCPSGEDVMPYRWEGSRFVEHDGYHTDYSKTTVDGATPDDGTGSEG
>CP029541.1|AWN28766.1|5581915_5582626_-|DNA-binding-response-regulator
MAETHVLFVEDDDVIREATQLALERDGFVVTAMPDGLAGLEAFRANRPDIALLDVMVPGLDGVSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHASGPDRAGAAAADADDPAEAVLRFGDLEVDTEGMEVRKGGQNVALTPTEMRLLLEFSNAPGTVLSRDRLLERVWDYGWGGDTRVVDVHVQRLRGKIGQDRIETVRGFGYKLRG
>CP029541.1|AWN28765.1|5580602_5581907_-|two-component-sensor-histidine-kinase
MVRLALRTGLRWKLSAAIALVGALVAIALSLVVHNAARHSMLDNSRDVQIERLNFTQKIFESTNRLQFGAKIDDPALPPPLRDEVAKNKRATYLQDTGQTAPEVWAASPLSNGRVLSMHDRFPDRFAVLDDLDQALVIGSTAVVVGGCALGVLVGGRLSQRLRKAAAAAGKLADGDTSVRIRDEVGTGRVRDETDDLAWAVDAMSDALQERIEAERRVTADIAHELRTPVTGLLTAAELLPPGRPSELVRDRAQALRTLVEDVLEVARLDGHAERAELQDVVLGEFVTRRVRALGPDIAVEVVRDAEVTTDPRRLERILGNLIANAARHGRPPIEVTVEGRVLRVRDHGSGFPEALLREGPSRFRTGSSDRAGRGHGLGLTIAAGQARVLGARLTFRNADELTDGSTGAVSVLWLPENAPTNTGSFPVIHLPER
>CP029541.1|AWN32244.1|5578784_5580299_+|MFS-transporter
MVLFALMIAMLLAMLDNMIVGTAMPTIVGELGGLEHLSWVVTAYTLATAASTPIWGKLGDMYGRKGVFLTSIVIFLIGSALSGMAQDMGQLIGFRAVQGLGAGGLMVGVMAIIGDLIPPRERGKYQGMMAGVMAVAMIGGPLVGGTITDHLGWRWSFYINLPLGAIALIMVTAVLHLPKKRSQTRIDYVGATLLTVGITALVLITTWGGTEYDWLSSQIIGLGVLGVVALALFVVVERKVGEPVLPLHIFRNGNFSLVTVIGFLVGFVMFGSMTFLPLFQQTVQGASATNSGLLLLPMLLAMMVVSLFAGRVTTRTGKYKIFVVVGGGLITLGLTLLSLMDTDTTRFTSGAYMAVLGAGMGFLMQTTMLIAQNSVEMKDMGVGSSSATLFRTIGGSFGVAILGAIFTHQVQATMVERIGKAGEKMTSGGAQMDPKGLAQLPPMIKDAYMHAVATGTHHVFLWGAVISIAGFAAAWFLKEVPLRGGPATPAETPQADRIAVAETV
>CP029541.1|AWN28774.1|5591911_5592613_-|DNA-binding-response-regulator
MNQHTPPGPLRVFILDDHEVVRRGVRDLLEAEGDIEVVGEAGDARQTLARVPATRPQVAVLDVRLGGGAGTGGDHEGIEVCRELRARMPELPCLMLTSFDDDEALFDAIMAGAAGYVLKQINGSELVHAVRTVAAGESMLDPRAASRVMARLRGPRQHTPQEPPASELDRLSPREREVLELIGQGLTNREIAHRLFLAEKTVKNRVSAILSKLGVGRRVQAAMVAERLREPGG
>CP029541.1|AWN28775.1|5592895_5594224_+|flavohemoprotein
MESLTGTSTSTVGGEYHALLARHDAMRLRNRLLSPRRSAEPDLPGPARYDGAADQRLITQYLDLVTPFGVLIEHLYAEMFRRRPYLRSLFPASMDFQRAHLARIFRYLIENLHDPDEVAALFTRLGRDHRKLGVRPVHYRTFEAALRVALRRTAGGRWTDAVEAAWVRMLRFAVAAMVEGAEATLAEPPYWQATVTAHELRRPDLAVLRVRPHEPYPYRAGQYAAVESPLLPQAWRPYSLACAPRPEGELELHVRQTCEGGVSEALVTRTLVGDVLRLGPANGTMTLDDDALGRDLLLVAGGTGWAPVKALVEELAGRRPGGAGRPVRAAQERRRVQLFLGARSRDELYDARVLADWADCRPWLRVVTVLDEGAAAGAYGPVAEAVARHGDWSGHLAYVSGPPAMVGATVSRLTGAGLPADRIRHDPLLDAGGVRPRPAVAR
>CP029541.1|AWN28776.1|5594305_5594809_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MNDTSAGHCAAARTGQGGAAAEGPRRSAALHRAEALRLLGTVSLGRIVFTRHALPAIHPVPHLVDDGDIVLRTHEGAALTTRDRWAGAGGVVVAYEADAIDTVTHLGWSVVVTGYCHLVTDPDALARYRRLLRPGWSGPDEHPWRERPHEHVLRIRPDLVTGVRLTA
>CP029541.1|AWN28777.1|5594833_5595958_-|DNA-integrity-scanning-protein-DisA
MAANDRASTPGRSGGSSSTESLMRASLSAVAPGTALRDGLERILRGNTGGLIVLGFDKTVETMCTGGFVLDVEFTATRLRELCKLDGALVLDKDITKILRAGVQLVPDASIPTEETGTRHRTAQRVSIQAGFPVVSVSQSMRLIALYVDGERRVLEESAAILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVTAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLEELIAGVEPERELVVRDYVPEPTAKRSRTVAEALAELDALSHTELLELPIVARALGYSGAPETLDSAVSPRGFRLLAKVPRLPGTVIDRLVDHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV
>CP029541.1|AWN28778.1|5596083_5597496_-|DNA-repair-protein-RadA
MATRKSSGKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAALPIGQVDGKQATARSTGVPELDRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLSAVLGHLDTVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLHFEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGIIGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGKIPDGMRVLEVADVGQALSVLPKRVRREAPQEEGARR
>CP029541.1|AWN28779.1|5597746_5599498_+|hypothetical-protein
MSSRPEHPTHSTGAHRSRGDARRRNRRQPSERPGPDAARPPDGSRDGYQPHLDGLFTYCLSVLCEHDAATAVLGEMLALAERHHGRRPADPALHRSWLYALARWACLRRLAERTAPAAGKPGPGAAREAERRQRELAALAWPEAAGTTPEQREALELSVRHHLSADEVAAVLGADPIATRALLATASCEVERTRAALAVVESGRCREVARLAGDTQMLLGAALSRELVRHVDDCAECRRTAERATAPGTWPGTAPVPQGTLPLVTAPMEAVLGALAAARRAKSGRAEGVAGAGGGGRASGANGSPRYDRSGFPVGPPKDRVARRRRLRSRALTTTVVATVVAAPVLALWAAYRGGPATDVAADDSPSVTASDTEPGPRLGGRPYENAGNARTTPGPGFKAGDGTPDVSVEVISADGTPQRPGGPGGRAESGPGRLTVAAEPRGRTTVLTLSASGGTPVRWRASAGAAWLQMSHTAGTLLPGESTTITVYIDHDREPAGHWRARIAIEPGGTVVTMHGHGVTGPAPGPQRPTSPHPKPTPPGPKPTPTPTPMSPSPTPTPTGPTPKPTGPDPSSTPSNTTHPAR
>CP029541.1|AWN28780.1|5599549_5600422_-|hypothetical-protein
MAKTKKAKHEKALKKEEKRRAQAAEGQRAPADEVGLDFARAWVTFPDPGDDEQLFRCDLTWLTSRWTCIFGSGCQGIQAGRADDGCCTLGAHFSDDDDEKRVAEHVARLTPDLWQYHDVGTQSGWVEEDEDGDRQTRRWEGSCIFQNRPGFPAGAGCSLHILALREGREPLETKPDVCWQLPVRRTYDWIDRPDDTQILQVTIGEYDRRGWGSGGHDLHWWCTSATSAHGAGEPVYVTYKPELTELMGKKGYAKLAELCEERLAATLPMAPHPADPRPPKKSQKAHKPQE
>CP029541.1|AWN28781.1|5600499_5601426_+|Ppx/GppA-family-phosphatase
MRLGVLDVGSNTVHLLVVDAHPGARPLPAYSHKAELRLAELLDGAGAISDPGVERLVATIHEALQVAEDKGVESVLPFATSAIREATNGEDVLRRVALETDVELQVLSGEDEARLTFLAARRWLGWSAGRLLVLDIGGGSLEIAYGLDEDPDVAVSLPLGAGRLTAGDLPGDPPDSDDVRTLRRRVRAEIAKVVSEFSRYGTPDQVVGTSKTFKQLARIAGAARSAEGLYVQRELTRKKLEEWVPRLATMSAEERVALPGVSEGRSRQLLAGALVAEAAMDLFGVETLEICPWALREGVILRRLDHLP
>CP029541.1|AWN28782.1|5601610_5602423_+|sugar-phosphate-isomerase/epimerase
MVRIPDAKVALSTASVYPESTATAFEIAARLGYDGVEVMVWTDPVSQDIDALRRLSDYHGVPVLAVHAPCLLITQRVWSTDPWVKLQRARNAAEKLGASTVVVHPPFRWQRSYAREFVRGVWRMAHETDVKFAVENMYPWRYRDREMLAYAPDWDPTNDDYRHFTVDLSHTATARNDALEMVGRMGDRLAHVHLADGNGSAKDEHLVPGRGSQPCAAVLERLAASGFDGHVVVEVNTRRAMSAAEREADLAEALAFTRLHLASPNRVPGS
>CP029541.1|AWN28783.1|5602419_5603070_+|TetR/AcrR-family-transcriptional-regulator
MSGGREEASPEPGTPPAPARRRGRPARAAAEAGPGARDRILAAARTEFAARGYDKTSVRGIAKAAGVDAALVHHYFGTKEQVFAAAIELTFGPALTMPDALAGGGADVGERMARFMFGIWENPVSRQPLLAIMRSALTNDTAAAVLRGLIERRMLQRVAGELVVPDPEFRVQLAAGHLMGIAVLRYVIKMDPVASADPEEIIAMVAPTLQRYLTQP

Crispr_ID: CP029541_14

• CRISPR_ID: CP029541_14
• CRISPR_location: 6585624-6585706
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_14

Consensus_repeat	Method
AGCCCGCCGCAGGCGAATCGGCGCCGCAC	CRISPRCasFinder

spacers of CP029541_14

>14.1|6585653|25|CP029541|CRISPRCasFinder
TCAACAGCTCACGCAGCGGACAGAG

CRISPR arrays and Neighbor proteins around CP029541_14

CRISPR arrays

The CRISPR arrays of CP029541_14

>merge|CP029541|14|6585624-6585706|CRISPRCasFinder
AGCCCGCCGCAGGCGAATCGGCGCCGCACTCAACAGCTCACGCAGCGGACAGAGAGCCCGCCGCAGGCGAAACGGCGCCGCAC

>CP029541|14|14|6585624-6585706|CRISPRCasFinder
AGCCCGCCGCAGGCGAATCGGCGCCGCAC	TCAACAGCTCACGCAGCGGACAGAG
AGCCCGCCGCAGGCGAAACGGCGCCGCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN29558.1|6582452_6582770_+|ATP/GTP-binding-protein	unknown	unknown	unknown
CP029541.1|AWN29556.1|6580640_6581033_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN29563.1|6593227_6593668_-|methylmalonyl-CoA-epimerase	unknown	unknown	gnl|CDD|213772
CP029541.1|AWN29565.1|6596362_6597067_-|peptidase-M4	unknown	unknown	gnl|CDD|377032
CP029541.1|AWN29566.1|6597175_6597892_+|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|223816
CP029541.1|AWN32332.1|6586515_6587541_-|export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213235
CP029541.1|AWN32331.1|6582782_6583700_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|224196
CP029541.1|AWN29555.1|6579728_6580391_-|endonuclease-NucS	unknown	unknown	gnl|CDD|235114
CP029541.1|AWN29557.1|6581222_6582266_-|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|366009
CP029541.1|AWN29551.1|6574538_6575180_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
CP029541.1|AWN32333.1|6593841_6595017_+|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl|CDD|180261
CP029541.1|AWN29562.1|6588768_6593019_-|hypothetical-protein	unknown	unknown	gnl|CDD|173412
CP029541.1|AWN29564.1|6595090_6596050_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl|CDD|224617
CP029541.1|AWN29561.1|6587716_6588655_-|cellulose-binding-protein	unknown	unknown	gnl|CDD|274008
CP029541.1|AWN29552.1|6575336_6576185_+|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|224170
CP029541.1|AWN29560.1|6585738_6586512_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|372253
CP029541.1|AWN32334.1|6597896_6599303_+|two-component-sensor-histidine-kinase	unknown	unknown	gnl|CDD|223715
CP029541.1|AWN29554.1|6577030_6579634_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|236090
CP029541.1|AWN29553.1|6576332_6576656_+|anti-sigma-factor-antagonist	unknown	unknown	gnl|CDD|132914
CP029541.1|AWN29559.1|6584122_6585370_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213235

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN29562.1|6588768_6593019_-|hypothetical-protein	gnl|CDD|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	7.04127e-24
CP029541.1|AWN29563.1|6593227_6593668_-|methylmalonyl-CoA-epimerase	gnl|CDD|213772	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.	4.92208e-51
CP029541.1|AWN29565.1|6596362_6597067_-|peptidase-M4	gnl|CDD|377032	pfam03413, PepSY, Peptidase propeptide and YPEB domain. This region is likely to have an protease inhibitory function (personal obs:C Yeats). This model is likely to miss some members of this family as the separation from signal to noise is not clear. The name is derived from Peptidase & Bacillus subtilis YPEB.	1.134e-06
CP029541.1|AWN29566.1|6597175_6597892_+|DNA-binding-response-regulator	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.88916e-82
CP029541.1|AWN32332.1|6586515_6587541_-|export-ABC-transporter-ATP-binding-protein	gnl|CDD|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	1.43502e-89
CP029541.1|AWN32331.1|6582782_6583700_-|ABC-transporter-permease	gnl|CDD|224196	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only].	6.52174e-05
CP029541.1|AWN29555.1|6579728_6580391_-|endonuclease-NucS	gnl|CDD|235114	PRK03298, PRK03298, endonuclease NucS.	9.7688e-177
CP029541.1|AWN29557.1|6581222_6582266_-|LLM-class-flavin-dependent-oxidoreductase	gnl|CDD|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	9.00101e-54
CP029541.1|AWN29551.1|6574538_6575180_+|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.31866e-11
CP029541.1|AWN32333.1|6593841_6595017_+|acetyl-CoA-C-acetyltransferase	gnl|CDD|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP029541.1|AWN29564.1|6595090_6596050_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl|CDD|224617	COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism].	8.88189e-125
CP029541.1|AWN29561.1|6587716_6588655_-|cellulose-binding-protein	gnl|CDD|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.98207e-06
CP029541.1|AWN29552.1|6575336_6576185_+|3-hydroxybutyryl-CoA-dehydrogenase	gnl|CDD|224170	COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism].	1.18197e-125
CP029541.1|AWN29560.1|6585738_6586512_-|ABC-transporter-permease	gnl|CDD|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	4.21534e-06
CP029541.1|AWN32334.1|6597896_6599303_+|two-component-sensor-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.10075e-44
CP029541.1|AWN29554.1|6577030_6579634_+|AAA-family-ATPase	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	1.07337e-08
CP029541.1|AWN29553.1|6576332_6576656_+|anti-sigma-factor-antagonist	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	5.10617e-21
CP029541.1|AWN29559.1|6584122_6585370_-|ABC-transporter-ATP-binding-protein	gnl|CDD|213235	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter. The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.	4.0523e-92

Protein sequences

>CP029541.1|AWN29559.1|6584122_6585370_-|ABC-transporter-ATP-binding-protein
MIEAVGLTKRYGAKTAVYNLSFQVRPGTVTGFLGPNGSGKSTTMRMILGLDAPTSGRATIAGRPFRSLPNAPRQVGALLDAKAVHGGRSARQHLLSLAQVSGIPARRVDEVLGVVGLQEVAGRRSKGFSLGMGQRLGIAAALLGDPQVLLFDEPVNGLDPEGILWVRNLMKQLASEGRTVFVSSHLMSEMALTAEHLIVIGRGQLLADMSVKDFISANSADFARVRTPDTEPEQREKLTAAIGEAGGQTAPEPDGALRVTGLPLPRISELAHQADVRLWELSPHQASLEEAYMQMTQGAVDYRSTADARAGLQEAPAGYAPQGGAPQGFAGGPGYPGGQPGLPGQVPAGVPGQGQPNPYAQQAPGYPPPAQGHPYGGPEPYGAPHPYGQQPAAPMPPAAPAAPAAQPTPHHEDAR
>CP029541.1|AWN32331.1|6582782_6583700_-|ABC-transporter-permease
MLQAQAPAQAPAQPQAQQPQNQPQQPPAQPHPQQSFAGAGGYVSSIPVRPTHLGHALLSEWTKIRSVRSTMWTLGVMVLLTVGIGLLTGAVIAGHSDSLGPESPLNYGTFGMMMGLIPLITLGVLVISSEYSTGMIRTTLTASPARARVLTAKAIVFFALSFVVTLVTTTVVAVAQYSMLSDMAKSAPTGAEWFKATVGVSLFTAMIGLLSLAVGALLRHSAGAITLMVGVYLLPLVLAIFMQAESLKDIQTWLLEYALPSQLNVMYDVALTSSGPSGWEPLWIVTGLAAVTLGSAYAVIHKRDV
>CP029541.1|AWN29558.1|6582452_6582770_+|ATP/GTP-binding-protein
MSPRRNRQHGGAKPVDRMGGDRYGLERTEEWRGEEWVVRMVGGGGAAKHYRCPGCDQEIPPGVPHVVAWPQHGDVDDRRHWHKACWNARDRRSARLQRSRNAPRY
>CP029541.1|AWN29557.1|6581222_6582266_-|LLM-class-flavin-dependent-oxidoreductase
MRVGAFILAAQFPGQGQGEALHRAVRSAEVAEEAGLDDVWLAEHHFVPYGVCPNAVTLAALLLGRTRRIGVGTAVSVLPTQHPVALGEQAALLHLTSDGRFTLGVGRGGPWIDLEVFGSGLAAYDHGFPESLDLLMRWLREPRVGAQGERYAFREVAVVPRPAEALTDPDGSGPPGPPVVVACTSASSVRTAAERGLPMLLGMHCGDEEKAEMVALWRSAALEAGRDGDEVAAAAHVSAGVVQIADDRQAAAETLMKAMPGWLQQGLGAHVTVDGRYRAMRDPLAYTELLCGLHPVGPPQLCADRLAATSERTGITRFALLVEGSGDLAATEENVRRLGTEVLPQLG
>CP029541.1|AWN29556.1|6580640_6581033_+|hypothetical-protein
MSLDVSPALLEQAERGEVDEAAFVDCVRTSLPFAWGMISSLVAQLKVDGGEFADNQTPPPDEQARGQLLRALASDAIRGSLERHFGVRLAFQNCHRVAVFPLDPAVDDRLARFTSIRGQLLNQSPELRDC
>CP029541.1|AWN29555.1|6579728_6580391_-|endonuclease-NucS
MRLVIARCSVDYAGRLTAHLPSAPRLILVKADGSVSIHADDRAYKPLNWMSPPCTLKEGDGDVWTVENKGGEKLIITLEEVMHDSSHELGVDPGLIKDGVEAHLQELLADRIETLGEGYSLIRREYPTAIGPVDILCRDADNQTVAVEIKRRGEIDGVEQLTRYLELLNRDPHLAPVKGVFAAQEIKPQARVLATDRGIGCVVLDYDALRGIEDDKLRLF
>CP029541.1|AWN29554.1|6577030_6579634_+|AAA-family-ATPase
MDPNTHRGPEEYGEQGSPAEPPAPAFGGAQSGSTGLARVVRLVSGPYLVTVNPVDGSEIEPCPPGERPAAPGRLDPEERAAAARAAAPPLPPGPSGFAGHETALEERTEDTERLVRLLSRGRSVRVTGPSGSGRTRLLDAVATACADLAPDGVVRLSGYHHTSTDLLYALFAAVYRAPQHRPDRAEMLRMVAEIGAIVVLDDLEFGGAALDELLDATPECAFLIAATPDVAAPSAGSHLEEVFLGGIGRGACGRLLERAVDRPLTDDEESWAADLWFESEGLPLRFVQAAALLRQYDRLRAAPGALDDGYGLFPEDGQATADPADEDAEPAEQPEVPLPSLGEAAAPAPLLASRLTEAARETLRFAVALGGELPHQAHLPALTQDTHADAALGELLACGLITPAGSHYRLAATVQDQLTAAGYADGAPARAHTVAQHYAWWAGHPSVTPERAAAESDVALAAMGVLTGSRESGHASAAVLLARTAAPAFAAALHWSAWERSLRHGQEAARLAGEVAEEAYFHHELGVLALCTGSLDRARAELEASIGLRGVLSDRNGAVAGRRALALVTDRTRADSAAAATTALPQAAGAASASRRDAPKEPAANPFDAASAPKLRKSRTEQTAQTLIARGASSTTATTGVPAATDSGAGAGKGVRRVFGGARRNVVAAGAGALLAAVLGTVVTIGATGGDDTPNDKVNTEQTTDDSDGTDLPAEQPATDSSLPPTSPGTSRPGTAGQSDRPSPSPSGTVPSGSPSAPGTGSADPTAGPTEPTERPTSPTGRPTRPTHPPTDEPTGTPSEEPTEPSPSGTTPTEPTDKPSTQSPSQSASGPSAGSPSASGTSGTTPSGGTPSDGTATSSGTESAPTT
>CP029541.1|AWN29553.1|6576332_6576656_+|anti-sigma-factor-antagonist
MHIRGDHAELVVGGRLDVRSAADARTALHAAVDSGRGDLVLDLTELDSWDATGLGVIMGAHRRAGRVNRRLVLRGVPPQMQRLLVATRLHRILAIEGGIEAESIPRV
>CP029541.1|AWN29552.1|6575336_6576185_+|3-hydroxybutyryl-CoA-dehydrogenase
MAKKLAVIGAGLMGSGIAQVSAQAGWDVVLRDVTDEALARGKGGIEASYEKFVAKGKLAASDAEQALARITTTTDLEAVADADIVVEAVFERIEIKREIFQALDKLVKEEAVLASNTSAIPITKIAAATSRPERVVGAHFFSPVPMMQLCELVRGYKTSDETLATARQFAESVGKTCVVVNRDVAGFVTTRLISALVVEAAKLYESGVASAEDIDTACKLGFGHAMGPLATADLTGVDILLHATDNIYTESQDEKFAPPEIMRRMVDAGDIGRKSGQGFYEH
>CP029541.1|AWN29551.1|6574538_6575180_+|TetR-family-transcriptional-regulator
MAEGLRERKKRQTRQYISDVATGLFLARGFDAVTIAEIADAAEVSVNTVYNYFPAKEDLFFDRSKGLVDRLSRFVRGRTAGESAASAVLRELREEVEAVSPRVGLIEGYDQFMRVVHGAPTLKARLWYMQQEIHLNLEETLREETAAAAGDPLPGLMAGQIGWVHQSLMGWIAHEMLDGRKPAEVSREALVLLDEMEELLGEKVLNYAVRTAD
>CP029541.1|AWN29560.1|6585738_6586512_-|ABC-transporter-permease
MGALGQVIRSEWTKIRSVRSTVWTLGIAVVVTIGLGVLICTLATNDFSSMPARDRLAFDATNISFAGMGLGQLSMIVFGVLVVSNEYSTGMIRASLAAVPQRGTFLFCKLLVATALVFVVGLATSFVTFFAGQAVLGDLRAHLGDPGVLRAVIGGGLYMTLIALFSMAVATMLRSPMLSLGILMPFFFLISNILGNVSATRKIGRYLPDQAGSKIMQVIPRANDEVPYGPWGGLGIMIAWTVVALVCGFVLLKKRDA
>CP029541.1|AWN32332.1|6586515_6587541_-|export-ABC-transporter-ATP-binding-protein
MIELEGLTKHYGDKVAVDHLTFTVRPGIVTGFLGPNGAGKSTTMRMMLDLDNPTAGTVRIDGKHYRQLKDPLTYIGALLEAKAVHGGRSAANHLLCLAQSNGIPRRRVAEVLDTVGLSAVAKKRSKGFSLGMSQRLGIAAALLGDPQVLLFDEPVNGLDPEGIHWIRNLMKNLAGQGRTVFVSSHLMSEMALTAEHLIVIGQGRLMADTSMKDFIHQNSRSYVRMRSPQQEKLLDLLHDEGIDAVAVGNGSLEIDGVPADRLGELAARHQLVLHELSPQQASLEDAFMQLTAESVEYHAHDGEPVPDRPAARPAGEPQPAGARPGKPQPTGWGADWQKKRS
>CP029541.1|AWN29561.1|6587716_6588655_-|cellulose-binding-protein
MSDTSSPFGFELVRRGYDRGQVDDRITKLVADRDSALARITSLEKRIEELHLETQNAQAQVNDAEPSYAGLGARVEKILRLAEEEAKDLREEARRAAEQHRELAESAAQQVRNDAESFAAERKAKAEDEGARIVEKAKGEASTLRAEAQKDAQSKREEADSLFEETRAKAAQAAADFETNLAKRREQSERDLASRQAKAEKRLAEIEHRAEQLRLEAEKLRTDAERRARQTVETAQRQAEDIVADANAKADRIRSESERELAALTNRRDSINAQLTNVREMLATLTGAAVAAAGAPGEDETVSRGVPAQQSR
>CP029541.1|AWN29562.1|6588768_6593019_-|hypothetical-protein
MRGNDRYEADDHLSQFEAEMERLKTERDKAVQHADDLGYQVEVLRAKLHEARRNLATRPAYDNVSHQAEQLLRNAQIQADQLRTDAERELREARAQTQRLLQEQAERQSRLEAELHAEAVSRRQRLDEELNERRQTVESHVNENVAWAEQLRARTESQARRLMEESRREAEQALAAARAEAQRLAERARERLGTEAEEARAEAESILRRARTDAERLLNAASSQAQEATDQAEQLRTSVGTESEEARRQAAELTRTAEARVQEADKALREARAEAEKLVDEAQQSATKRLTAAESDNEQRTRTAKAEIARLVGEATKEAEALKAEAEQLRSDARAEADRLVAEAQESARSKAAEDSAAQLAKAARSAEEVLTKASEDAKATTKAAAEEAERLRKEAESEADRLREEAHDTVAQLKGAAKDDTKEYRAKTVELQEEARRLRGEAEQLRADAVAEGERIRGEARREAVQQIEEAAGTAEELLAKAKSDAEETRSGAVAESERVRTEAIERASALRRQAEEALERSRSEAEELLTEGAQAAEMVTTEAEESAARLRAEAEQAAEERRAEAQDELDRLHSEAEEKVTAAERSLRDARAEAERLRRETQEEAARLKAESAERRRTLQQQAEEEAERLRTEAAEDASAARSEAESVAVRLRTEASAEAERLKAEAQETADRVRAEAATAAERTGAEAAQALAAAQEEAARRRREAEQLLGEAREEAHQERTAAREQSEELLASARTRVGEAQEEAQRLVEDADRRAGELVAAAEQTAQQVRDSVAGLHEQAGEEIAGLRSAAEHAAERTKAEAQDEADRIRRDAYEERERASEDAARARAEAQEATEAAKSLAERAVSEAIEEADGLRAEAAGVVDEARREADAARTEASEQADRLVSEATERAEKLVADATAKAQQLRTDASDALAAGEQDAARARAEARDDANRMRSDAAEQADRLITEARAEAERIVTEATELTSSAQDDADRTVQEAQQAAERLRADGEQHAQRLVAEATETAERLRAEAAEALEEARRDADRTGDEARKAANKTRSDAAEQADELMSEAATEAERLRTEAAETTADAERDADRTRADAREQADRMLATATAEADRLRTEAAETVTAAQEHANRTRNDSAKLKEDAEAAAEQTRNEAQQEADRLLDEARKEAAKRRGDAAEQADQLVAKAQEEALKAATAAEEQADTMVGAARKEAERLVAEATTDGNARVEKARTDANTMLEEARRDATGIRDRAEELRQRIESEVEELHERARRESAETMKNAGERVDKLIAQATAQQVEAEEKADRMVADANSEASKVRISAVKKAEGLIKEAENKKAEAVRDAERMRTEAEAEATRIVDEGKRELEVLVRRREDINAEISRVQDVLEALESFEAPGGGGEGKGAGVKAAAGAGATRSSGKQSEG
>CP029541.1|AWN29563.1|6593227_6593668_-|methylmalonyl-CoA-epimerase
MLTRIDHIGIACFDLDKTVEFYRATYGFEVFHTEVNEEQGVREAMLKINETSDGGASYLQLLEPTREDSAVGKWLAKNGEGVHHIAFGTADVDGDSEAIRGKGVRVLYDEPRTGSMGSRITFLHPKDCHGVLTELVTAAPAGSADH
>CP029541.1|AWN32333.1|6593841_6595017_+|acetyl-CoA-C-acetyltransferase
MIVAGARTPMGRLLGSLRTFSGADLGAVAIKAALDRAGIGGDQVQYVIMGQVLQAGAGQIPARQAAVKAGIPMNVPALTVNKVCLSGLDAIALADQLIRAGEFDVIVAGGQESMTNAPHLLPKSREGFKYGAVEMLDAMAHDGLTDAYEGIAMGESTEKHNTRLGIARPEQDEVAARSHQRAAAAQKNGLFEAEITPVEIPQRKGEPVVFSQDEGIRGETTAESLGKLRPAFAKDGTITAGTSSQISDGAAAVVVMSKAKAQELGLEWIAEIGAHGNVAGPDNSLQSQPSNAINHALKKDGLAVDDLDLIEINEAFAAVAVQSMKDLGVSPEKVNVNGGAIALGHPIGMSGARIVLHLALELRRRGGGVGAAALCGGGGQGDALIIRVPGK
>CP029541.1|AWN29564.1|6595090_6596050_+|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MVDVPQLVEQARQGRPRAVARLISLVEGASPELREVMAALAPLTGNAYVVGLTGSPGVGKSTTTSALVTAYRKMGKRVGVLAVDPSSPFSGGALLGDRVRMSEHASDPGVYIRSMATRGHLGGLAWAAPQAIRVLDAAGCDVVLVETVGVGQSEVEIASQADTSVVLLAPGMGDGIQAAKAGILEIGDVYVVNKADRDGADATARELNHMLGLGESRAPGDWRPPIVKTVAARGEGVDEVVEALEKHRAWMEEHGVLAQRRRSRAAHEVETIAVTALRERIGDLRGDRRLDALAERIVSGETDPYRAADELVDGLTNGD
>CP029541.1|AWN29565.1|6596362_6597067_-|peptidase-M4
MKRQLIIATAAAAALVAAGTVTAVAVSNDGSGTARSGAPVTAQPAAHDAGSGTAQVQDGRSSIRTQDDDANGQEDIREARTAKVTASDAAAAALKAVPGTVAGLDLDADRPGLVWDADVLGKDGKWHEVTLDAGNARVLNQHVDQDEDDDARERAALHNARTDAGAAARTAAASHGTVTSVELDDDRAKAVWEVETVTNDGKEHKLLVDPQSGKLSAAPAHDADDDNDDDGADD
>CP029541.1|AWN29566.1|6597175_6597892_+|DNA-binding-response-regulator
MHPHVTQHRPPGSAAHPPYRLLIVEDEKRLALSLAKGLMAEGYAVDVVHDGLAGLHQASEESYDLLVLDIMLPGMNGYRVCGALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRGRTAPPVLQVGSLAIDQGARRVERDGVEVTLTTKEFAVLEQLAVRAGEVVSKAEILEHVWDFAYEGDVNIIEVYVSALRRKLGAGHIVTVRGAGYRLVAGG
>CP029541.1|AWN32334.1|6597896_6599303_+|two-component-sensor-histidine-kinase
MGSVRARAAAGATVVVALALIAAGTAVLLVLQGNLQDQAGLQAQVAARSVAEQIATGKPYDQLDLPDGEDHPVVVAAENGRVLAVGEDVRAVDGKRVAKTSQGAGSVAPSGDDEDGEDEDEQGLKSGEVDDDVVYRDGTADVDGTVADYRFAVVEAKDIRGEQATVRAGSALAPERDAVGSVRDAMLVGLPLLLVVVAGVTWLVTRRALRPVEGIRGEMAAITASTDLSRRVPVPSSKDEIGRLARTTNETLAALESSVERQRRFVADASHELRSPIASLRTQLEVGVAHPELLDVPGAVEDTVRLQRLAADLLLLARLDAGERPADARVDLAAMVREESSQRVADRIPVRAGELASAEVAGSRGQLGRVLGNLLDNAQRHAVSSVRVAVVREGEWAVLRVEDDGPGVPESERERIFERFVRLDDARARDDGGAGLGLAIARDVAVRHGGSLAVRTGSVFELRLPVAG

Crispr_ID: CP029541_15

• CRISPR_ID: CP029541_15
• CRISPR_location: 6671708-6671845
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of CP029541_15

Consensus_repeat	Method
GGGGCGGCAGAGAGCCCCAGGAAGG	CRISPRCasFinder

spacers of CP029541_15

>15.1|6671733|32|CP029541|CRISPRCasFinder
AGCGAGGGAGAGCCCCAGGAAGGCCATGAAAG
>15.2|6671790|31|CP029541|CRISPRCasFinder
CCAGGAACGGGGCGGCGGAGCTCTCCCGAAC

CRISPR arrays and Neighbor proteins around CP029541_15

CRISPR arrays

The CRISPR arrays of CP029541_15

>merge|CP029541|15|6671708-6671845|CRISPRCasFinder
GGGGCGGGGGAGAGCTCCGGAACCGAGCGAGGGAGAGCCCCAGGAAGGCCATGAAAGGGGGCGGCAGAGAGCCCCAGGAAGGCCAGGAACGGGGCGGCGGAGCTCTCCCGAACGGGGCGGCGGAGAGCCCCAGGAAGG

>CP029541|15|15|6671708-6671845|CRISPRCasFinder
GGGGCGGGGGAGAGCTCCGGAACCG	AGCGAGGGAGAGCCCCAGGAAGGCCATGAAAG
GGGGCGGCAGAGAGCCCCAGGAAGG	CCAGGAACGGGGCGGCGGAGCTCTCCCGAAC
GGGGCGGCGGAGAGCCCCAGGAAGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN29625.1|6679532_6680918_-|L-serine-ammonia-lyase	unknown	unknown	gnl|CDD|273233
CP029541.1|AWN32340.1|6664288_6665503_+|hypothetical-protein	unknown	unknown	gnl|CDD|380079
CP029541.1|AWN29618.1|6672844_6673399_-|muramidase	unknown	unknown	gnl|CDD|279518
CP029541.1|AWN29620.1|6675151_6675943_+|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|223816
CP029541.1|AWN29619.1|6673695_6674916_-|glycosyl-transferase	unknown	unknown	gnl|CDD|340847
CP029541.1|AWN29623.1|6678184_6678910_+|hypothetical-protein	unknown	unknown	gnl|CDD|239486
CP029541.1|AWN29608.1|6660276_6662532_-|glycogen-debranching-enzyme-GlgX	unknown	unknown	gnl|CDD|131155
CP029541.1|AWN29613.1|6667812_6668592_+|disulfide-bond-formation-protein-DsbA	unknown	unknown	gnl|CDD|372611
CP029541.1|AWN29614.1|6668588_6669428_+|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl|CDD|223856
CP029541.1|AWN29626.1|6681021_6682716_-|amino-acid:proton-symporter	unknown	unknown	gnl|CDD|223605
CP029541.1|AWN29624.1|6679121_6679433_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN29611.1|6666618_6667158_+|hypothetical-protein	unknown	unknown	gnl|CDD|340413
CP029541.1|AWN29617.1|6671882_6672713_-|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl|CDD|234831
CP029541.1|AWN29609.1|6662830_6664087_+|hypothetical-protein	unknown	unknown	gnl|CDD|380079
CP029541.1|AWN29621.1|6675944_6677492_+|two-component-sensor-histidine-kinase	unknown	unknown	gnl|CDD|223715
CP029541.1|AWN29610.1|6665586_6666354_+|enoyl-CoA-hydratase	unknown	unknown	gnl|CDD|180295
CP029541.1|AWN29622.1|6677488_6677872_-|CopY-family-transcriptional-regulator	unknown	unknown	gnl|CDD|367747
CP029541.1|AWN29612.1|6667275_6667755_+|hypothetical-protein	unknown	unknown	gnl|CDD|237030
CP029541.1|AWN29616.1|6670989_6671343_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN29615.1|6669598_6670867_-|dNTP-triphosphohydrolase	unknown	unknown	gnl|CDD|235098

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN32340.1|6664288_6665503_+|hypothetical-protein	gnl|CDD|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	2.71918e-74
CP029541.1|AWN29612.1|6667275_6667755_+|hypothetical-protein	gnl|CDD|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00025551
CP029541.1|AWN29620.1|6675151_6675943_+|DNA-binding-response-regulator	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.04746e-81
CP029541.1|AWN29619.1|6673695_6674916_-|glycosyl-transferase	gnl|CDD|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	3.68377e-106
CP029541.1|AWN29623.1|6678184_6678910_+|hypothetical-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.40323e-31
CP029541.1|AWN29608.1|6660276_6662532_-|glycogen-debranching-enzyme-GlgX	gnl|CDD|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
CP029541.1|AWN29613.1|6667812_6668592_+|disulfide-bond-formation-protein-DsbA	gnl|CDD|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.64253e-30
CP029541.1|AWN29614.1|6668588_6669428_+|cytochrome-c-biogenesis-protein-CcdA	gnl|CDD|223856	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones].	4.02249e-24
CP029541.1|AWN29626.1|6681021_6682716_-|amino-acid:proton-symporter	gnl|CDD|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	8.64953e-51
CP029541.1|AWN29625.1|6679532_6680918_-|L-serine-ammonia-lyase	gnl|CDD|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
CP029541.1|AWN29611.1|6666618_6667158_+|hypothetical-protein	gnl|CDD|340413	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains. This family includes histidine kinase-like ATPase (HATPase) domain of RsbW, an anti sigma-B factor as well as a serine-protein kinase involved in regulating sigma-B during stress in Bacilli. The alternative sigma factor sigma-B is an important regulator of the general stress response of Bacillus cereus and B. subtilis. RsbW is an anti-sigma factor while RsbV is an anti-sigma factor antagonist (anti-anti-sigma factor). RsbW can also act as a kinase on RsbV. In a partner-switching mechanism, RsbW, RsbV, and sigma-B participate as follows: in non-stressed cells, sigma-B is present in an inactive form complexed with RsbW; in this form, sigma-B is unable to bind to RNA polymerase. Under stress, RsbV binds to RsbW, forming an RsbV-RsbW complex, and sigma-B is released to bind to RNA polymerase. RsbW may then act as a kinase on RsbV, phosphorylating a serine residue; RsbW is then released to bind to sigma-B, hence blocking its ability to bind RNA polymerase. A phosphatase then dephosphorylates RsbV so that it can again form a complex with RsbW, leading to the release of sigma-B.	5.79851e-19
CP029541.1|AWN29617.1|6671882_6672713_-|ammonia-dependent-NAD(+)-synthetase	gnl|CDD|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	7.51815e-167
CP029541.1|AWN29609.1|6662830_6664087_+|hypothetical-protein	gnl|CDD|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	1.93805e-55
CP029541.1|AWN29621.1|6675944_6677492_+|two-component-sensor-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.40848e-46
CP029541.1|AWN29610.1|6665586_6666354_+|enoyl-CoA-hydratase	gnl|CDD|180295	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.	2.74278e-77
CP029541.1|AWN29622.1|6677488_6677872_-|CopY-family-transcriptional-regulator	gnl|CDD|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	4.38418e-25
CP029541.1|AWN29618.1|6672844_6673399_-|muramidase	gnl|CDD|279518	pfam01183, Glyco_hydro_25, Glycosyl hydrolases family 25.	2.35081e-37
CP029541.1|AWN29615.1|6669598_6670867_-|dNTP-triphosphohydrolase	gnl|CDD|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	1.15743e-87

Protein sequences

>CP029541.1|AWN29616.1|6670989_6671343_-|hypothetical-protein
MGYANLRELQTALTTASDLASALQSAPTRRDADQLVDVLRQALTAAGSLGAETGPTGCALHPHGAVDPLYGDPEDPLPPGYGKCLLCNDRRRRADAHPPHTRPYARPHPRWRRRLSA
>CP029541.1|AWN29615.1|6669598_6670867_-|dNTP-triphosphohydrolase
MPDDGQRSGFEHDVDRILYSTQWRALAGKSQVVASAELGAYHTRLTHSMKVAQLGRRMAERLERQYGGPNPALVEAACMAHDIGHPPFGHAGELALRATMDELHFADGVLDSFEGNAQTLRVLTFLAAHKYPGHRGLHLTRACLDASTKYPWERAPVDQDPARHVKWGVYVADREAFSWVRAGRTDSAVPVEEQVMDWADDVTYACHDVEDFYRTGLIPLAALFPPDGAAGSDTERETCRFLDYVQAKRARSGEAFDRAAALVMMEDIGKRLAVPAPYSGSHEDAVAVNRRTADLISYFTRGIELEVGGAAAIRYGAQLVIPPDRRAACDLLKELVWCYVIDRPALATQQHGKRRVVSELLRWSHDAPELLPPDRAEELALHGDRLRAAADHVASLTEDQALALHRRLSGTGLGSVNDNVWL
>CP029541.1|AWN29614.1|6668588_6669428_+|cytochrome-c-biogenesis-protein-CcdA
MTDIGYLAAFLGGALALLSPCSALLLPAFFAYSLATPGRLMARTGVFYLGLATTLVPLGAASTAASRLFNGHRDLLIAVGGWVVIAMGLAQILGLGFASRRAQAAAARITPRSAVSTFLLGCVYGLAGFCAGPILGAVLTVTAVSGSPAYGASMLAVYALGMALPLFVLALLWDRCKLGTRGWLRGREFTLGKLRLHTTSLLSGVFFIGIGVLFLRFNGTSALPGILDADAEFRAEEWATRIGNGVPDAVLIAVAALVVAGVLARFALRPEKKQRDGTE
>CP029541.1|AWN29613.1|6667812_6668592_+|disulfide-bond-formation-protein-DsbA
MPVSASPTRKLAAIGAVIALVVAVIAIGVAIGTSVEGDRDTGRADAPEAAASAGPQEDPAQQKMFDDLAKRTSRRADGDPLAIGKKDAPVVLVEYADYQCSFCGRFTRETQPGLIKKFVDNGTLRIEFRNFTVFGADSERAARASWAAGQQGKFWQLHDALYSKTRKGAALAEDKLVDLARTSGVDDLDKFRADLKSADAERALKKDQDEGYQLGVQSTPSFLVNGRPVAGAQPYEVFAQAVEQAAERAGHGPAAKGTK
>CP029541.1|AWN29612.1|6667275_6667755_+|hypothetical-protein
MHQLRRSAALSLLLLLAVTFGPLLCRTGGGQAWPAGRATTATADWRAADAPPAAAADATGPADGTATARPAAAHSGPRLGTDAPVAVAHAPKRCSDRHAPGPEESAPPPAPHRGEPLAPATTGPGPLAADLPAQYALARPPTDTASAVDHTALLPVLRI
>CP029541.1|AWN29611.1|6666618_6667158_+|hypothetical-protein
MMGGMAGLEGMEQPRPRSDPAAARRGIPDADRDRSPAPRRPVSAAPEPAGDPALGEVRLPSRPQSAGIARRLTAAVLLKQWSLTPQLTEHAVLLVSELVGNAVRHTGARTFGLRMLRRRGWLRIEVRDPSRGLPCLMPVQEMDLSGRGLFLVDKLSERWGVDLLPRGKTTWFEMRIADR
>CP029541.1|AWN29610.1|6665586_6666354_+|enoyl-CoA-hydratase
MTVNLEVADGVGTIRLDRPPMNALDIATQDRLRELAEEATRRDDIRAVVIWGGEKVFAAGADIKEMQVMDHAAMVVRSKALQDSFTAVARIPKPVVAAITGYALGGGCELALCADIRIAADNAKLGQPEILLGLIPGAGGTQRLARLVGPSKAKDLIFTGRQVKADEALTLGLVDRVVPAAEVYEQAHAWAARLAAGPALALRAAKESVDAGLETDIDTGLTIERNWFAGLFATEDRETGMRSFVEEGPGKAKFR
>CP029541.1|AWN32340.1|6664288_6665503_+|hypothetical-protein
MPARRRRWRHQGGGPLAVLLAAVLLLVTGCGGDDGDGEKAGKAGGGKDASQAAVTIAPKDGADDVATSGALKVTAQKGRLKSVKVKDGKGNEVDGKISGDGAVWKPSGHLGASTKYTVDAIAVDGQGREAAEHSGFTTLVPKNTFIGQYSPENGQRVGVGMPVSIRFTRGITDPAAVEDAIKVSAEPSVPIEGHWFGNDRLDFRPEKYWAPGTEVTLKLNLNGVEGRPGVYGTQAKEVSFTVGRSQVSTVDAKSKKMTVVRDGKTVKTIPITAGAPGTETYNGKMVISEKHLVTRMNGDTVGFGGEYDIKDVPHAMRLSTSGTFIHGNYWSGRAAFGTRNASHGCVGLFDQRGGGDGSTPAAWFFRNSVIGDVVVVKNSHDETIQPDNGFSDWNLSWEKWKAAQ
>CP029541.1|AWN29609.1|6662830_6664087_+|hypothetical-protein
MRGRLPDRAAGRAPRGAALRAARRTRVALVVLAGLTGAAALAGCGGPEAFVGGKPRSPEEAIRVVPHNGAHGVRADGRFEVRVPAGRLERVEVSRTGEAGQQSVAGRISPDGMTWRPAPGRLQLGARYTVDAVALDGAGHRSARHTTFTTSAPARRFVGHFSPQRDATVGTGLIFSMVFNRPIADRAAVERAVRVSARPGVEIAAHWFGPRRLDFRPRERWRPGTEITVQLRLRGVKAAPGAYGTQRRTVRYRVGRDQVSTIDAARHTMTVRRGGRVVAVLPVTAGDAESPTYNGRMVILERHSMTRMDGDTVGFGGEYDIPDVPHAMRLTRSGTFLHGNYWAPPEVFGGVNTSHGCVGLKDIKGGGPNTPAGWFFGQSIVGDTVVVHNSPERTVAPDNGLGGWNMPWQLWRAGSALR
>CP029541.1|AWN29608.1|6660276_6662532_-|glycogen-debranching-enzyme-GlgX
MSSAPEQEAVADEPLAPPADIRPGSPTPLGARYRTGPDGTAGTNFALWAGGAEAVELCLFDDAERETRHALTELTHEIWHGFLPGVRPGQRYGFRVHGRWDPWSGARWNPAKLLLDPYARAVDGDFGTRTEATGSGAALPAQLYGHVRDWPQQQAADTVRDDRDSAPYVPKGVVVGDDTGDEGGADEWRDDRRPKTPWPDSVLYELHVRGFTMRHPGIPERLRGTYAGLAHPAALEHLVRLGVTAVELLPVHQFAHEDHLVRRGLRNYWGYNSIGYFAPHAGYAATGTRGQQVGEFKRMVRALHDAGIEVILDVVYNHTAEAGELGPTLSLRGIDNRGYYRLAGDARRYADYTGCGNTLHVVQPHVLRLITDSLRYWVTEMGVDGFRFDLAAALARSMHDVDMLSPFLAVIAQDPVLRRVKLIAEPWDVGNGGYQVGAFPPLWTEWNDRYRDTVRDFWRGAQHDVRDLGYRLSGSSDLYAWGGRRPYASVNFITAHDGFTLRDLVTYEHKRNADNGEGNRDGTHDNRSWNCGAEGETDDPAVTALRHRQLRNLLTTLLLSTGVPMLVAGDEMGRTQHGNNNAYCQDNATSWLDWSLLDDPQWRPLAGLVARLIALRRAHPVLRRRAFFSGRPQQQGGLRDLAWFTADGTEMTEQDWYTPGATLGMYLSGNDISQRDARGIRIVDDSFLAVLHAAAQPRPFTLPGPPWAGGYELLVDTAREAQPGSAEPPYAAGGPITLAGRSVTLFRAVPG
>CP029541.1|AWN29617.1|6671882_6672713_-|ammonia-dependent-NAD(+)-synthetase
MTDPASKALQQEIARDLQVTASFDAEQEIERRVSFLTERLTSTGLRSLVLGISGGVDSTTTGRLCQLAVERARAAGHEATFYAMRLPYGVQADEKDAQRALEFIRADRELTVDIRPASDAALQAALDGGLTFRDAHHQDFVQGNIKARQRMIAQYAVAGAHNGLVVGTDHAAEAVSGFFTKFGDGAADVVPLTGLTKRRVRAVSAALGAPAELVQKVPTADLETLDPGKPDEDALGVSYDQIDDFLEGKPVDEAAAQAIVRRYRLTEHKRALPIAP
>CP029541.1|AWN29618.1|6672844_6673399_-|muramidase
MLHGVDVSSYNTSYSTAGLDFVFVKATEGRSYINPHQSAQASKARKAGCVVGFYHFLWPGNIAAQAKYFVEKCASVQGDLLACDWERTGEGTYASNAQKDQFLVEVKKLRPTHRVMLYCNRDFWLNHDTTSYAADGLWIADYVSAGHPRIKAKWRIHQYTDRPLDKDVADFSSKAALKKWAHPA
>CP029541.1|AWN29619.1|6673695_6674916_-|glycosyl-transferase
MKITLLLHNAYAIGGTVRTTLNLAAALADRHDVEIVSMLRHREVPRFTVDPRVRLVPLVDTRVGSEDMADPLFGEPAQDFPLAEKRHHQYSRLVDVRAAELLRATDADVLIGTRPGINVYLARFAPRRALRIAQEHLRHDAHSKRLRTELARHYGTLDAVVTTTEADAAVYRARMPLPGVRVLAVPNIVPAPAGPPSEGTSNVIAAAGRLVRGKRFDLLIEAFSAVAAKHPEWQLRIHGGGTERARLQGLIDGLGLSGQAELTGPRSPIEAEFAKASIVASASDAESFGMTIVEAMRCGVPVVSTDCPLGPAEIIHDGTDGLLVPPGDGRALAGALLTLIEDPGRRRTMAERARESSHRYDPEPIAERYQVLFGELRSTRGRRTRQRIAARVRARARRLLRRALRR
>CP029541.1|AWN29620.1|6675151_6675943_+|DNA-binding-response-regulator
MTHSVLLAEDDRPIRTALERALTLEGYQVTAVADGIQALAAAHRERPDVILLDVMMPGIDGLQVCQVLRAEQDRTPILMLTARVETADRIAGLDAGADDYVVKPFEVEEVFARLRALLRRTTAGAAGAEDGGGPGTGPDGADEPGEAGGGAEAGGAYEARVADSGVVEAADLRIDGPSRRAWRGERELELTRTEFELLELLARNAGIVLDHSTIYDRIWGYDFGPGSKNLAVYVGYLRRKVDVPGSRPLIHTVRGVGYVLRED
>CP029541.1|AWN29621.1|6675944_6677492_+|two-component-sensor-histidine-kinase
MPGPRDRAGTGPRAVWRRLRVRLRAWLRSWRRGGSAAWLRTRRPASLRTAFAVAFAAGAAAVTVLVGFLSYDAAARLVRVDEKSVFSQVVRDLRIQVQEKPFGPADYATADPDHDGPRDDLTRPSRTEVQILGPGGRIVERGRPVLPAGPAERRIADDERAGEHAEREADMGDEEYHVATVALGGGRGAVQVAQKFSETEDLLSALQQRTALLAAAVIALAGAGGWWLARRITGRLVRLTAVAESVAEHGRLDVPVPVAGRDEVARLGRAFDDMLGRLASAVQDQQRLVQDAGHELRTPLTSLRTNISLLKRFDELPSDAREELLADLAGEARELSDLVNELVDLAAGQRDDDPLAEVGLAESAEKAAASARRRTGREITVRTVRPAVVEGRPAALHRALTNLLENAAKFDAGGTEPIEVVVTGARVEVLDRGPGIADADLTRVFDRFYRAAAARGLPGSGLGLAIVREIATAHGGHAFATHRPGGGATLGFTVGTGTGSSTGSGGAHTETGLGS
>CP029541.1|AWN29622.1|6677488_6677872_-|CopY-family-transcriptional-regulator
MSETSPVQRRPSGELEASVLAALWAAEGPLSPAEVQSTLGRRLARTTVTTILTRLHHKGAVSRSRAGRGFVYSPIQDSAGLTARRMRSELDKQDDRGTTLARFVSQLTSEDAQLLRSLLEGAGDRAP
>CP029541.1|AWN29623.1|6678184_6678910_+|hypothetical-protein
MTAAGPEPGPAANGPQPEPAPGHGTRPRPGTAGLLTFAAVCAALFAATALTVSLRNGTPLAAEQAAVRWSGAHQGEPSRSMAGALTATGSGPVPYLMAVLAGLLAGERARGRLRAVCCAVAVLAAGQAIRYGLMELLARPRPPAGDWTGSSSGYAFPSGHATTSVLAAGILAWGIARRARPALARTWCAVLALWAAGVGLTRIYLGVHWPGDVLGGWFLAAGLLALALLLEPFALGRPGRS
>CP029541.1|AWN29624.1|6679121_6679433_+|hypothetical-protein
MNQPLDTPPPPRRAADTTAAPAAPHGRCPAAAAKDPTPCEGPRDAATIVDRHGRESAGCVHHCARLLAGLEGARVHPFVPAPQALDVYSRARELPPFAWEIGR
>CP029541.1|AWN29625.1|6679532_6680918_-|L-serine-ammonia-lyase
MAISVFDLFSIGIGPSSSHTVGPMRAARMFVGRLKKDGLLSGTVRVRAELFGSLGATGHGHGTPKAVLLGLEGHSPRTVDVESADGEVERIRSTKRLRLLGAEIGSAHEIDFDEAGELILHRRRALPYHANGMTLFAYDAAGAPLLEKTYYSVGGGFVVDEDAVAGENPIVPDDTVLTHPFRTGDELLRLAQDTGLSISALMLENEKAWRTEDEIRTGLLEIWQVMQACVSRGTSREGILPGGLKVRRRAAHSARQLRSEGDAAARAMEWTTLYAMAVNEENAAGGRVVTAPTNGAAGIIPAVLHYYINFVPGADEDGVVRFLLAAGAIGMLFKENASISGAEVGCQGEVGSACSMAAGGLAEVLGGSPEQVENAAEIGMEHNLGLTCDPVGGLVQIPCIERNGMAAVKAVTAARMALRGDGRHHVSLDKVIKTMKDTGADMSVKYKETARGGLAVNIIEC
>CP029541.1|AWN29626.1|6681021_6682716_-|amino-acid:proton-symporter
MDMSAGGRKGLSLFALIMIGIGSIFGSGWLFGAGAAAQVAGPAALVAWVIGVVFIGMIAMSYAEVGSAYPIPGGMARYGHLSHGPVLGFLTGWAVWIATASLIPIESIAATQYMTSWSFDWAKGLVDPATHQLTLSGTAVALVLTLALWLTCFWSVQLLARANTVLTLVKFAIPVLAVLALIGSGFHTSNFTDHGGFAPYGWPAVLTAVTTCGVVFAFNGFQAVVNLGGAAKNPGRAIPLALVGALSLGLVIYLALQVAYLGSVPPELLERSGGWQGVNLNSPFADLAGLLMLHWVVTMLQFGAFISPAGSNIANVASAAYMVTNLAETGFFPRKLAAVHPRYGTARPAMWLNLGFSVLLLLTVGHSWQALAGVVSAAMVISYLIGPVAVGVLRRTRPDLPRPFRLPAAGVLCPVTFAFAACALYWSKWPETGKITVLTLVAVPVAALVLWRRGDLAQGGAASGKGGRGASLLRQFAPAWWMVLFLVWTATVSALGGREFGGRGLLPGELGTAVIAVTAPLFYFWAVRSGVRAHARGLTGSLSPAETTPAPTVTADDGRPMVSV

Crispr_ID: CP029541_17

• CRISPR_ID: CP029541_17
• CRISPR_location: 6970274-6970366
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP029541_17

Consensus_repeat	Method
GGATCTGGTAGAGTCGGAAACGC	CRISPRCasFinder

spacers of CP029541_17

>17.1|6970297|47|CP029541|CRISPRCasFinder
GAAGAAGCCGAAAGGCGGAAACGCACCGGCGAAAATCGGGCCCGCAA

CRISPR arrays and Neighbor proteins around CP029541_17

CRISPR arrays

The CRISPR arrays of CP029541_17

>merge|CP029541|17|6970274-6970366|CRISPRCasFinder
GGATCTGGTAGAGTCGGAAACGCGAAGAAGCCGAAAGGCGGAAACGCACCGGCGAAAATCGGGCCCGCAAGGATCTGATAGAGTCGGAAACGC

>CP029541|17|17|6970274-6970366|CRISPRCasFinder
GGATCTGGTAGAGTCGGAAACGC	GAAGAAGCCGAAAGGCGGAAACGCACCGGCGAAAATCGGGCCCGCAA
GGATCTGATAGAGTCGGAAACGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP029541.1|AWN29843.1|6967329_6968229_+|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl|CDD|235107
CP029541.1|AWN29846.1|6976779_6977826_-|surface-layer-protein	unknown	unknown	gnl|CDD|274824
CP029541.1|AWN29836.1|6960317_6962537_+|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl|CDD|131743
CP029541.1|AWN29835.1|6959735_6960023_+|30S-ribosomal-protein-S15	unknown	unknown	gnl|CDD|180170
CP029541.1|AWN29850.1|6987401_6990221_+|cell-division-protein-FtsK	unknown	unknown	gnl|CDD|224588
CP029541.1|AWN29848.1|6980900_6986423_+|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl|CDD|237951
CP029541.1|AWN29845.1|6975895_6976573_+|DegT/DnrJ/EryC1/StrS-aminotransferase	unknown	unknown	gnl|CDD|99740
CP029541.1|AWN29849.1|6986678_6987338_+|response-regulator	unknown	unknown	gnl|CDD|381147
CP029541.1|AWN29847.1|6977969_6980600_-|PAS-domain-containing-protein	unknown	unknown	gnl|CDD|369272
CP029541.1|AWN29851.1|6990445_6991258_+|DUF4115-domain-containing-protein	unknown	unknown	gnl|CDD|379173
CP029541.1|AWN29842.1|6966373_6967132_+|thymidylate-synthase-(FAD)	unknown	unknown	gnl|CDD|234847
CP029541.1|AWN29852.1|6991361_6992870_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl|CDD|223694
CP029541.1|AWN29840.1|6965244_6965802_-|hypothetical-protein	unknown	unknown	gnl|CDD|377816
CP029541.1|AWN29839.1|6964709_6965165_+|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN29841.1|6965903_6966140_-|hypothetical-protein	unknown	unknown	unknown
CP029541.1|AWN29844.1|6968343_6970029_+|RNase-J-family-beta-CASP-ribonuclease	unknown	unknown	gnl|CDD|223668
CP029541.1|AWN29853.1|6992866_6993517_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl|CDD|273139
CP029541.1|AWN29854.1|6993513_6994050_+|damage-inducible-protein-CinA	unknown	unknown	gnl|CDD|234789
CP029541.1|AWN29838.1|6963951_6964704_+|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl|CDD|234595
CP029541.1|AWN29837.1|6962533_6963913_+|insulinase-family-protein	unknown	unknown	gnl|CDD|223685

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP029541.1|AWN29843.1|6967329_6968229_+|4-hydroxy-tetrahydrodipicolinate-synthase	gnl|CDD|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	7.9345e-158
CP029541.1|AWN29846.1|6976779_6977826_-|surface-layer-protein	gnl|CDD|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	1.78137e-15
CP029541.1|AWN29836.1|6960317_6962537_+|polyribonucleotide-nucleotidyltransferase	gnl|CDD|131743	TIGR02696, polyribonucleotide_nucleotidyltransferase, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.	0
CP029541.1|AWN29835.1|6959735_6960023_+|30S-ribosomal-protein-S15	gnl|CDD|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.6806e-52
CP029541.1|AWN29850.1|6987401_6990221_+|cell-division-protein-FtsK	gnl|CDD|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.24578e-151
CP029541.1|AWN29848.1|6980900_6986423_+|hybrid-sensor-histidine-kinase/response-regulator	gnl|CDD|237951	PRK15347, PRK15347, two component system sensor kinase.	6.0759e-75
CP029541.1|AWN29845.1|6975895_6976573_+|DegT/DnrJ/EryC1/StrS-aminotransferase	gnl|CDD|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.51667e-24
CP029541.1|AWN29849.1|6986678_6987338_+|response-regulator	gnl|CDD|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.0387e-36
CP029541.1|AWN29847.1|6977969_6980600_-|PAS-domain-containing-protein	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	2.93146e-45
CP029541.1|AWN29851.1|6990445_6991258_+|DUF4115-domain-containing-protein	gnl|CDD|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	2.07935e-19
CP029541.1|AWN29842.1|6966373_6967132_+|thymidylate-synthase-(FAD)	gnl|CDD|234847	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed.	7.45761e-74
CP029541.1|AWN29852.1|6991361_6992870_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl|CDD|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	1.48483e-123
CP029541.1|AWN29840.1|6965244_6965802_-|hypothetical-protein	gnl|CDD|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	0.000456288
CP029541.1|AWN29837.1|6962533_6963913_+|insulinase-family-protein	gnl|CDD|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.46666e-122
CP029541.1|AWN29844.1|6968343_6970029_+|RNase-J-family-beta-CASP-ribonuclease	gnl|CDD|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
CP029541.1|AWN29853.1|6992866_6993517_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl|CDD|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	5.91753e-32
CP029541.1|AWN29838.1|6963951_6964704_+|4-hydroxy-tetrahydrodipicolinate-reductase	gnl|CDD|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	9.43788e-99
CP029541.1|AWN29854.1|6993513_6994050_+|damage-inducible-protein-CinA	gnl|CDD|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	8.52891e-55

Protein sequences

>CP029541.1|AWN29844.1|6968343_6970029_+|RNase-J-family-beta-CASP-ribonuclease
MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEFDGRLLIVDCGVLFPEEEQPGIDLILPDFTSIRDRLDDIDGIVLTHGHEDHIGAVPYLLREKPDIPLIGSKLTLALIEAKLQEHRIRPYTLEVKEGHTERIGSFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLPLDRRLTDLPAFARLGEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVASFASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARELGYLKVPAGLVVDVKALDDLPDDEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRWGADVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVRKDRIVIAEDGVVVDLVDGVAKIVGKVQAGYVYVDGLSVGDVTEAHLKDRRILGDEGIISVYVVVDSTTGKIVGGPDIHARGSGIDDGAFSGVIPKIDEALAKSAQDGITEPHQLQQLVRRTVGKWVSDNYRRRPMILPVVIEV
>CP029541.1|AWN29843.1|6967329_6968229_+|4-hydroxy-tetrahydrodipicolinate-synthase
MAPTSTPQTPFGRVLTAMVTPFTADGALDLDGAQRLAAHLVDAGNDGLVVNGTTGESPTTSDAEKAQLVRAVVDAVGDRAFVVAGAGTNDTHHSLELARAAQDAGAHGLLAVTPYYSKPPQEGLLRHFTAIADATELPVMLYDIPGRSGVPINTETIVRLAEHPRIVANKDAKGDLGRASWAIARSSLAWYSGDDMLNLPLLSVGAVGFVSVVGHIVTPELRALLDAHLNGDVTKATEIHQKLLPVFTGMFRTQGVITTKAALGLQGLPAGPLRLPLVELSPEETEQLTRDLAAGGVQL
>CP029541.1|AWN29842.1|6966373_6967132_+|thymidylate-synthase-(FAD)
MSQTPAESTESPDSAAVSFRSEVTVELVKHSAADSDVLWAARVSTAGEQSLEELQKDPERSKGLINYLMRDRHGSPFEHNSMTFFISAPIFVFREFMRHRVGWSYNEESGRYRRLDPVFYVPGQDRKLVQQGRPGKYEFVEGTPAQQELTGRVMEDSYRQAYEAYQEMLAAGVAREVARAVLPVGLFSSMYATCNARSLMHFLGLRTQHEQAKVPSFPQREIEMVGEQMEAHWAKLMPLTYGAFNANGRIAP
>CP029541.1|AWN29841.1|6965903_6966140_-|hypothetical-protein
MFRRREPVPFAFVAEADRFRSNVTPPPRQRASRAQLLGQSLITLTVVGGLAGALLFGLPALQQDSSGPSRVHQSEAHR
>CP029541.1|AWN29840.1|6965244_6965802_-|hypothetical-protein
MPLPFLTADRDLDLDTGAADTAALPHDEPDHWRRPYRPGPWRVGAAAVLLLLASFVLISAMIIAMAGSLPGAAACAVVGALMIALALRLLRVGLWVSSHGLRQVNLLRTATEPWSAIGSVRTRQQPVRWLGLPRTVQGQALIIERTQGEPLRTLITDHNGDFLSRPEAFERAADVLEAWAAEYRA
>CP029541.1|AWN29839.1|6964709_6965165_+|hypothetical-protein
MGGKITYFFLATVLVLVFGVVALEGVLLLLTGEPAAMGMGAVAFLLPCVGGWFLWHNTRFARDAHRLSRALEAEGGLPADELQRTPGGRIDRDAADAVFTRRQAETEEAPGDWRTWFRLAVAYHDARDTPRARKAMQRAIALHDNKPVPAA
>CP029541.1|AWN29838.1|6963951_6964704_+|4-hydroxy-tetrahydrodipicolinate-reductase
MSKLRVAVLGAQGRIGSEAVRAVESAEDMEMVAGLGRGDKLETLVEAGAQVVVELTNPGAVMGNLDFCVRHGIHAVVGTTGWTDERLAQLRTSLAASPGAGVLIAPNFSIGAVLTMQFAQQAARFFESVEVVELHHPKKADAPSGTAARTAQLIAKAREEAGCAPQPDATSTALDGARGADVDGVPVHSVRLRGLLAHQEVLFGGEGETLTIRHDSLHHSSFMPGILLGVRRVVNTPGLTVGLENFLDLG
>CP029541.1|AWN29837.1|6962533_6963913_+|insulinase-family-protein
MTSRTHTTTARTSTEGRAVARTQTLLKGTAGAGTVRRTTLPGGLRIVTETLPTVRSVTFGIWANVGSRDETPSLNGATHYLEHLLFKGTERRSALDISAAIDAVGGEMNAFTAKEYTCYYARVLDTDLPLAIDVVCDMLTGSLVEAEDVDAERGVILEEIAMTEDDPGDCVHDLFAHTMLGDTPLGRPVLGTVDTVNALTPERIRRFYKKHYDPTHLVVTAAGNIDHAKVVRLVRRAFEQAGALDRTDATPMAPRSGARAIRTAGRVELLNRKTEQAHVILGMPGMARTDDRRWAMGVLNTALGGGMSSRLFQEVREKRGLAYSVYSYTSGFADCGLFGVYAGCRPSQVHDVLKICRDELDQVASQGLTDDEIRRAIGQLRGSTVLGLEDTGALMHRIGKSELCWGEQMSVDEMLARIAAVTPDEVREVARDVLGTRPSLSVIGPLKDRQAARLDDVVA
>CP029541.1|AWN29836.1|6960317_6962537_+|polyribonucleotide-nucleotidyltransferase
MENETHYAEAVIDNGSFGTRTIRFETGRLAKQAAGSAVAYLDDDTMVLSATSASKTPKDQLDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQIVETVMALNPDHLYDVVAINAASCSTQLAGLPFSGPVGGTRVALINGQWVAFPTHSELENAVFDMVVAGRVLPDGDVAIMMVEAEATEKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKVLCKAQSDLAAKAAKPVGEFPIFLDYQDDVLEALTAAVKDELSQALTIAGKQERETELDRVKGVAAEKLLPQFEGREKEISAAYRSLTKSLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGAPKRREIGHGALAERAIVPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQEIDGQTHYVALTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLDGIPASVLAAALKQARDARLHILDVMNEAIDVPDEMSPNAPRIITVKIPVDKIGEVIGPKGKMINQIQEDTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVVAVGAKVQVEIAEIDQRGKLSLIPVIEEEDAAADTKDDAAK
>CP029541.1|AWN29835.1|6959735_6960023_+|30S-ribosomal-protein-S15
MSLDAATKKQIMAEFATKEGDTGSPEVQVAMLSRRISDLTEHLKTHKHDHHSRRGLLLLVGQRRRLLQYLAKKDITRFRALVERLGIRRGAAGAK
>CP029541.1|AWN29845.1|6975895_6976573_+|DegT/DnrJ/EryC1/StrS-aminotransferase
MRTVGTLKSAGVRAGDEVVVPAYGSAEVARAVVELGAVPVFADVDGDSYCLDPAAVADVVTTQTAAVVAVNRFGRRADAGWIREVGQRHGLLVLVEDEPGADPADADLRRAHAAYLDGRLNGVRTPTPAAGHTYEQYVVRVPGNGRPDRDAFARTLRAKGVACSVPVLAPVYRMPGLRRDVFLPQTERAVDETLALPVHAGMSRRELHKMVGACNALGGLLQPAF
>CP029541.1|AWN29846.1|6976779_6977826_-|surface-layer-protein
MTSTPAGSPGDLLAVVSQTGPTVTFFDAATHERLEVLQLPPQPHELCFDPDHRLLYCASTYRSGFYHAHEGRAHRITVIDVDTRTIVDTLDTSPDHAPHGLALDRARGRLYASVEATDTEPGGVLVIDTRTHARLGRISTMAPGPHWFAITPDGRYGYATNKEAPFVSVVDLDRGECTGRIPVAGSEGLTIAPDGRHAYVAAPKADFATPSSAPTGIHVIDTATHEIIRTLPTKGQVMPVHATATGLLLAGELRPDTTPGGPLGAQLPGALTVFAADTLAPLGEVEVGRLPLTITSSPDGRLGYVSGNVSSTVTVVDLTTLSPLATLEVDRTDISGAHGLAYIEAPQN
>CP029541.1|AWN29847.1|6977969_6980600_-|PAS-domain-containing-protein
MITARAAATFEPVGRSVATARAFVRDTLQGWGCADIVDDAVVLTSELVTNAVVHAGTAADVLCLRNDGGVRISVADRYPEREIPLQNAGQVVVHPDREGGRGLLLCGALAARWGVEYTAAQKHVWFQLDLPERPAGTRSAGPALPVDALPVTDTRVRVAVIQIDRSGCISFWNEDAQDLFAYDPEQVIGKPLTDFAAWPHTPGTGTGIAEALQLSRWEGSYGIRGADGRVVPVYASHLRVRDADGEASTVCLLVRDHERAILQSPQRTPAPDAASQASQSEGRPSDPFEVFIGSPAPDDLDGLLQRTVERARDMLDGDAAYLLLATDDETELEVRASTGLPSARQRFARVPVEAGSGRYGSARMPAVHEDLTAVPGAVPLLSGTGMRSVVTVPLKVEGRLTGSLGVAAEGAGRYTNEEALRLQFAADRIALAVERARLTELEKLRRGSLSFLVEASDLLAGTLDRDQTLALMAQMTVPTLATWCAVYTVADQTSEPELSYVLHEDEDRIDGLKTLLMKVDPPEPVPTPGARVWTAPSDAAHDAALRTSMRSLGLGNSARPSTGPGATLATASAVGGETVVLPLVARNRVIGMLTLGKPTEEHFRQEILELAEDLSRRAALALDNARLYSERTAISQSLQRSLLPPEQPEIPGVEVEVIYRAAGEGNEVGGDFYDIFPIRDGVYGFAIGDVCGTGPEAAAVTGLARHALRLLAREGFGGPAVLERLNAAILDEGARSRFLTLLYGELWPQNDGSAVLKVVCAGHPLPLRLRQDGTVEPAAEPQPLLGVMDDLELYEQTVTLDPGDVLLCVTDGVTERREGTRMLGDDGLTDVLTTCTGLTAGAVATRVLRAVERFAAEPASDDMAILAMRVPEFQAG
>CP029541.1|AWN29848.1|6980900_6986423_+|hybrid-sensor-histidine-kinase/response-regulator
MESGAAARGASTRAKGGRSRNNGTTEVDTAALNRLLVALVAMRDGNFRKRLTVSGDGVMSEIAAVFNEVADRNLHLTGELTRVRRVVGREGKLTERLEVGAAEGSWAAAIDASNALVDDLVRPVSEVGRVLSAVSEGDLEQRMDLRSRSSDSSSEHPLRGEFLKVGRTVNGLVDQLSAFTDEVTRVASEVGTEGKLGGQARVRGMSGSWKDLTESVNTMASRLTAQVRDIALVTTAVAKGDLSRKVTVHVSGEMLELKNTVNTMVDQLSSFASEVTRVAREVGTEGELGGQAQVPGVAGVWKDLTDSVNLMAGNLTAQVRGIAQVTTAVANGDLSQKVTVSARGEVAQLADTINTMTETLRTFADEVTRVANEVGAEGQLGGQAQVPGAAGTWKDLTDSVNTAFRNLTAQVRDIAQVTTAVANGDLSQTVTVDVAGEMLELKNTVNTMVGQLSSFGAEVTRVAREIGVEGELGGQAAVPGAAGTWKDLTDSVNTAFRNLTGQVRNIAQVTTAVANGDLSQKVTVDVSGEMLQLKNTVNTMVDQLSSFADQVTRMARDVGTEGRLGGQARVDGVSGTWKELTDSVNFMAGNLTSQVRQIAQVTTAVARGDLSQKIDVDARGEILELKNTINTMVDQLSAFAEQVTRVAREVGTDGRLGGQAQVPGVAGVWRDLTDSVNGMAGNLTAQVRNIAQVATAVARGDLSQKIDVDARGEILELKNTLNTMVDQLSSFAEQVTRVAREVGTEGILGGQAEVQGVSGTWKDLTQSVNFMANNLTSQVRNIAEVTTAVARGDLSKKITVDAKGEILELVTTVNTMVDQLSSFAEQVTRVAREVGTEGQLGGQARVPGATGIWLDLSDNVNLMANNLTIQVRNISQVSAAVANGDLTKKVTVEARGEVAQLADTVNTMVTTLSSFADEVTRVAREVGTDGILGGQARVPGVAGTWKDLTESVNSMANNLTGQVRNIAMVTTAIAKGDLTKKIDIDARGEILALKTTINTMVDQLSSFAEQVTRVAREVGTEGQLGGQAQVRGVAGTWRDLTESVNEMAGNLTRQVRAIAAVAAAVTLGDHNVRIDVDAAGEILELQDNVNTMISTLRETTLANEEQDWLKGNLARISGLMQGRRDLKDVATLIMSELSPAVSAQHGAFFLAAQPDSQEIGADGGEAGAYELRLMGSYGYAMGGMPTTFRPGETLIGTAAEEGRTILVENVPSGYLKIASGLGEAPPANVIVLPVLFEDKVLGVIELASFQPFTQIQKDFLSQIAEMIATSVNTISVNTKTEVLLKQSQELTEQLKERSGELESRQKALELSNSELEEKAEQLRAQNRDIEVKNTEIEEARQVLEERAEQLAVSMRYKSEFLANMSHELRTPLNSLLILAKLLADNAEGNLSPKQVEFAETIHGAGSDLLQLINDILDLSKVEAGKMDVSPTRIALVQLVDYVEATFRPLTAEKGLDFSVRVSPELPATLHTDEQRLLQVLRNLLSNAVKFTDSGAVELVIRPAGADVPVAIREQLLEHGSLRDPDADMIAFSVTDTGIGIASSKMRVIFEAFKQADGTTSRKYGGTGLGLSISREIARLLGGEIHAASEPNRGSTFTLYLPHNPGGLPPQGYPQLVAGGIAMDAEARESEVGQQEAEEQPDHEQGVGGSLSRRRRRAISGTPRRFELSGRQPSSAPQPVPQAPPQPTPQPVPQQPAEEPWIGNGQDLVDPAFEGGFHGEKVLIVDDDIRNVFALTSVLEQHGLSVLYAENGREGIEVLEQHDDIVLVLMDIMMPEMDGYATTAAIRRMPQFAGLPIIALTAKAMKGDREKSIDSGASDYVTKPVDTDHLLSVMEQWMRAE
>CP029541.1|AWN29849.1|6986678_6987338_+|response-regulator
MVQKAKILLVDDRPENLLALEAILSALDQTLVRASSGEEALKALLTDDFAVILLDVQMPGMDGFETAAHIKRRERTRDIPIIFLTAINHGPHHTFRGYAAGAVDYISKPFDPWVLRAKVSVFVELYMKNCQLREQASLLRLQLEGGRPSADEARESAGLLAELSARLAAVEEQAEALSKQLDETADAAAVATAAHLERKLTGLRRALDALEPGSGSAAG
>CP029541.1|AWN29850.1|6987401_6990221_+|cell-division-protein-FtsK
MPAFACNLVAMASRTSGKGTQSTAGPSKQRAGRTAGAAKKTAAKKAPAKPPAKKAAAAKKAAAKKAPAKKAPAKKAAPKPAPSPTGGVYRLARACWLGLAHGIGAVFRGMGRGAKNLDPAHRKDGLALLLLGLALVIAAGTWSNLSGPVGDLVELLVTGAFGRLDLVVPILLGGIAVRLIRHPEKPEANGRIVIGLSALVVGVLGQVAMACGSPGRDDGLAAIQDAGGYLGWVASKPLIFTVGQTLAVALLALLTLFGLLVVTATPVNAIPQRLRALGIKLGVVHPVADEADYDEVEEYAEEWREQPVRRPRRGAAAAPAANDPDAIEEAALAKRRRPRRASAQPAPDRPMDAVDVAAAAAAALDGAVLHGVQPSPLVAGLSSSISGDRRGHDGEDTAGESGTVPPARDAEPEPPAAEHTPAVPDFTKAPPERSGELPARAEQLQLSGDITYSLPSLDLLSRGGPGKTRSAANDAIVTSLTTVFQEFKVDAAVTGFTRGPTVTRYEVELGPAVKVEKITALAKNIAYAVASPDVRIISPIPGKSAVGIEIPNTDREMVNLGDVLRLADAADDDHPMLVALGKDVEGGYVMANMTKMPHILVAGATGSGKSSCINCLITSVMMRATPEDVRMVLVDPKRVELTAYEGIPHLITPIITNPKRAAEALQWVVREMDLRYDDLAAYGFRHIDDFNEAVRSGKVSSPEGSERELAPYPYLLVIVDELADLMMVAPRDVEDSIVRITQLARAAGIHLVLATQRPSVDVVTGLIKANVPSRLAFATSSLADSRVILDQPGAEKLIGKGDGLFLPMGANKPVRMQGAFVTEAEVGAVVQHCKDQMAPVFRDDVTVGTARKKEIDEDIGDDLDLLCQAAELVVSTQFGSTSMLQRKLRVGFAKAGRLMDLMESRNIVGPSEGSKARDVLVKPDELDGVLAVIRGEATE
>CP029541.1|AWN29851.1|6990445_6991258_+|DUF4115-domain-containing-protein
MSIGNSPEADRPSVGAALQKARIGAGLTVEEVSTTTRVRIPLVHAIEQDDFSRCGGDVYARGHIRALARAVSLDSRPLIDQFDAEHGGRPAPTPAAPLFEAERIRSEPRRPNWTAAMVAAIVAVVGFAGFTLFTGGDKSDGGPIAAGDAHAKPAPAPTRHPSTIKPPIKPDPEPSDSAVAGLPKDKVTIKVTARDGQSWISAKDANGKLLEDGLLKQGESKTITDKKRIDLVLGNAGAVQLYVNGKEVKRVGEKGTVERLSYTPGDPQAG
>CP029541.1|AWN29852.1|6991361_6992870_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MPERRTVALVTLGCARNEVDSEELAGRLAADGWELVEEAADADVAVVNTCGFVEAAKKDSVDALLEANDLKDHGRTQAVVAVGCMAERYGKELAEALPEADGVLGFDDYGDISGRLQTILSGGIHASHTPRDRRKLLPISPAERQDAAVALPGHAQTVSGEPTPPADPPEDLPEGVAPASGPRAPLRRRLGSSPVASVKLASGCDRRCSFCAIPSFRGSFISRRPSDVLGETRWLAGEGVKEIMLVSENNTSYGKDLGDIRLLETLLPELAAVDGIERIRVSYLQPAEMRPGLIDVLTGTDKVAPYFDLSFQHSAPGVLRSMRRFGGTDSFLELLETIRTKAPQAGARSNFIVGFPGESESDLAELERFITEARLDAIGVFGYSDEDGTEAASYEDKVDPDVVAERLARVSRLAEELTAQRAEERIGETLRVLVDRTDDEDGVVGRAAHQAPETDGVTLLSTDQELAPGRMVEAKVVASEGVDLVAEVLSVEGTGCTEEAGR
>CP029541.1|AWN29853.1|6992866_6993517_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MTGVPASAAGGPRTAPVVRQAGLWNIANVLTMLRLVLVPAFVVLLMHDGGTDPVWRVFAWAAFAVAMITDIFDGHLARAYNLVTDFGKIADPIADKAIMGAALVCLSVLGDLPWWVTGVILFRELGITLMRFWVIKHGVIPASRGGKIKTLAQGTAVGMYVLVLTGPLATFRWWVMAVAVALTVITGLDYVRQAVVLRRAGLARERAERAERGAAG
>CP029541.1|AWN29854.1|6993513_6994050_+|damage-inducible-protein-CinA
MSGPGSAAAGVLEMLAGRGQSLAVAESLTGGLVAGALTAVPGASRVVRGSVTAYATEVKREVLGVDGALLAARGAVDGEVARQMASGVRRVLGADWGLATTGVAGPDPQDGHPVGTVFVAVQGPDGAGAVRRLSLAGDRDRIRQDTIRAVLALLLSELTENTRAQDTEQHGGNGCLQP

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029541_4	4.1|2618596|43|CP029541|CRISPRCasFinder	2618596-2618638	43	CP029541.1	4648369-4648411	0	1.0
CP029541_4	4.1|2618596|43|CP029541|CRISPRCasFinder	2618596-2618638	43	CP029541.1	5626576-5626618	0	1.0
CP029541_17	17.1|6970297|47|CP029541|CRISPRCasFinder	6970297-6970343	47	CP029541.1	4648369-4648415	0	1.0
CP029541_17	17.1|6970297|47|CP029541|CRISPRCasFinder	6970297-6970343	47	CP029541.1	5626572-5626618	0	1.0
CP029541_4	4.1|2618596|43|CP029541|CRISPRCasFinder	2618596-2618638	43	CP029541.1	7351975-7352017	1	0.977
CP029541_17	17.1|6970297|47|CP029541|CRISPRCasFinder	6970297-6970343	47	CP029541.1	7351971-7352017	1	0.979
CP029541_4	4.1|2618596|43|CP029541|CRISPRCasFinder	2618596-2618638	43	CP029541.1	3998720-3998762	2	0.953
CP029541_17	17.1|6970297|47|CP029541|CRISPRCasFinder	6970297-6970343	47	CP029541.1	3998720-3998766	2	0.957

1. spacer 4.1|2618596|43|CP029541|CRISPRCasFinder matches to position: 4648369-4648411, mismatch: 0, identity: 1.0

ttgcgggcccgattttcgccggtgcgtttccgcctttcggctt	CRISPR spacer
ttgcgggcccgattttcgccggtgcgtttccgcctttcggctt	Protospacer
*******************************************

2. spacer 4.1|2618596|43|CP029541|CRISPRCasFinder matches to position: 5626576-5626618, mismatch: 0, identity: 1.0

ttgcgggcccgattttcgccggtgcgtttccgcctttcggctt	CRISPR spacer
ttgcgggcccgattttcgccggtgcgtttccgcctttcggctt	Protospacer
*******************************************

3. spacer 17.1|6970297|47|CP029541|CRISPRCasFinder matches to position: 4648369-4648415, mismatch: 0, identity: 1.0

gaagaagccgaaaggcggaaacgcaccggcgaaaatcgggcccgcaa	CRISPR spacer
gaagaagccgaaaggcggaaacgcaccggcgaaaatcgggcccgcaa	Protospacer
***********************************************

4. spacer 17.1|6970297|47|CP029541|CRISPRCasFinder matches to position: 5626572-5626618, mismatch: 0, identity: 1.0

gaagaagccgaaaggcggaaacgcaccggcgaaaatcgggcccgcaa	CRISPR spacer
gaagaagccgaaaggcggaaacgcaccggcgaaaatcgggcccgcaa	Protospacer
***********************************************

5. spacer 4.1|2618596|43|CP029541|CRISPRCasFinder matches to position: 7351975-7352017, mismatch: 1, identity: 0.977

ttgcgggcccgattttcgccggtgcgtttccgcctttcggctt	CRISPR spacer
ttgcgggcccgattttcgccggcgcgtttccgcctttcggctt	Protospacer
**********************.********************

6. spacer 17.1|6970297|47|CP029541|CRISPRCasFinder matches to position: 7351971-7352017, mismatch: 1, identity: 0.979

gaagaagccgaaaggcggaaacgcaccggcgaaaatcgggcccgcaa	CRISPR spacer
gaagaagccgaaaggcggaaacgcgccggcgaaaatcgggcccgcaa	Protospacer
************************.**********************

7. spacer 4.1|2618596|43|CP029541|CRISPRCasFinder matches to position: 3998720-3998762, mismatch: 2, identity: 0.953

ttgcgggcccgattttcgccggtgcgtttccgcctttcggctt	CRISPR spacer
ttgcgggcccgattttcgccggtgcatttccgcctttcagctt	Protospacer
*************************.************.****

8. spacer 17.1|6970297|47|CP029541|CRISPRCasFinder matches to position: 3998720-3998766, mismatch: 2, identity: 0.957

gaagaagccgaaaggcggaaacgcaccggcgaaaatcgggcccgcaa	CRISPR spacer
gaagaagctgaaaggcggaaatgcaccggcgaaaatcgggcccgcaa	Protospacer
********.************.*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029541_9	9.1|3924133|29|CP029541|CRISPRCasFinder	3924133-3924161	29	MF063068	Pseudomonas phage Noxifer, complete genome	247945-247973	3	0.897
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	236371-236399	6	0.793
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1213196-1213224	6	0.793
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	472182-472210	6	0.793
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1675083-1675114	7	0.781
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1372708-1372739	7	0.781
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP045345	Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence	468033-468061	7	0.759
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	362347-362375	7	0.759
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	30228-30256	7	0.759
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP045329	Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence	476022-476050	7	0.759
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	365210-365238	7	0.759
CP029541_8	8.1|3623444|29|CP029541|CRISPRCasFinder	3623444-3623472	29	NZ_CP045335	Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence	228202-228230	7	0.759
CP029541_9	9.1|3924133|29|CP029541|CRISPRCasFinder	3924133-3924161	29	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	1567618-1567646	7	0.759
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	484117-484148	8	0.75
CP029541_2	2.2|386055|32|CP029541|CRISPRCasFinder	386055-386086	32	NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	118204-118235	8	0.75
CP029541_2	2.2|386055|32|CP029541|CRISPRCasFinder	386055-386086	32	NZ_CP007516	Rubrobacter radiotolerans strain RSPS-4 plasmid 2, complete sequence	24416-24447	8	0.75
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	65368-65399	9	0.719
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	734304-734335	9	0.719
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	174335-174366	9	0.719
CP029541_2	2.1|385994|32|CP029541|CRISPRCasFinder	385994-386025	32	MF140397	Arthrobacter phage Abidatro, complete genome	23120-23151	9	0.719
CP029541_2	2.2|386055|32|CP029541|CRISPRCasFinder	386055-386086	32	MG757166	Gordonia phage SuperSulley, complete genome	15912-15943	9	0.719
CP029541_2	2.2|386055|32|CP029541|CRISPRCasFinder	386055-386086	32	MF919510	Gordonia phage Kabluna, complete genome	14845-14876	9	0.719
CP029541_2	2.2|386055|32|CP029541|CRISPRCasFinder	386055-386086	32	MK376962	Gordonia phage NosilaM, complete genome	15724-15755	9	0.719
CP029541_2	2.2|386055|32|CP029541|CRISPRCasFinder	386055-386086	32	MH779499	Gordonia phage Buggaboo, complete genome	15912-15943	9	0.719
CP029541_2	2.4|386177|32|CP029541|CRISPRCasFinder	386177-386208	32	NZ_CP025513	Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence	68669-68700	9	0.719
CP029541_15	15.2|6671790|31|CP029541|CRISPRCasFinder	6671790-6671820	31	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	35417-35447	9	0.71
CP029541_15	15.2|6671790|31|CP029541|CRISPRCasFinder	6671790-6671820	31	NZ_CP054604	Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence	93692-93722	9	0.71
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	613098-613129	10	0.688
CP029541_1	1.1|378291|32|CP029541|CRISPRCasFinder	378291-378322	32	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	604414-604445	10	0.688
CP029541_2	2.1|385994|32|CP029541|CRISPRCasFinder	385994-386025	32	NZ_CP021368	Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence	61994-62025	10	0.688
CP029541_2	2.1|385994|32|CP029541|CRISPRCasFinder	385994-386025	32	NZ_CP021364	Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence	81070-81101	10	0.688
CP029541_15	15.1|6671733|32|CP029541|CRISPRCasFinder	6671733-6671764	32	NC_008539	Arthrobacter sp. FB24 plasmid 3, complete sequence	90577-90608	10	0.688
CP029541_15	15.1|6671733|32|CP029541|CRISPRCasFinder	6671733-6671764	32	NZ_CP011667	Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence	17272-17303	10	0.688
CP029541_15	15.1|6671733|32|CP029541|CRISPRCasFinder	6671733-6671764	32	NZ_CP033583	Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence	226153-226184	10	0.688
CP029541_2	2.2|386055|32|CP029541|CRISPRCasFinder	386055-386086	32	NZ_LR536451	Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2	166620-166651	11	0.656
CP029541_2	2.6|386050|37|CP029541|CRT	386050-386086	37	NZ_CP024895	Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence	118204-118240	11	0.703

1. spacer 9.1|3924133|29|CP029541|CRISPRCasFinder matches to MF063068 (Pseudomonas phage Noxifer, complete genome) position: , mismatch: 3, identity: 0.897

gcctgcctcgaagtggcttacgactggca	CRISPR spacer
gactacctcgaagtgacttacgactggca	Protospacer
* **.**********.*************

2. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccccggcgtcgctgtccgtccggct	CRISPR spacer
cggggcccggcggcgcggtccgtccggcg	Protospacer
*. * ******* *** *********** 

3. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccccggcgtcgctgtccgtccggct	CRISPR spacer
cggggcccggcggcgcggtccgtccggcg	Protospacer
*. * ******* *** *********** 

4. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 6, identity: 0.793

cacgccccggcgtcgctgtccgtccggct	CRISPR spacer
cggggcccggcggcgcggtccgtccggcg	Protospacer
*. * ******* *** *********** 

5. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
gaccttcgcgtcgctggccgagcggctgtccc	Protospacer
********** *******.***** *    **

6. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.781

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
gaccttcgcgtcgctggccgagcggctgtccc	Protospacer
********** *******.***** *    **

7. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 7, identity: 0.759

cacg-ccccggcgtcgctgtccgtccggct	CRISPR spacer
-atgtttccggcgtggctgtccgtccggag	Protospacer
 *.* ..******* *************  

8. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 7, identity: 0.759

cacg-ccccggcgtcgctgtccgtccggct	CRISPR spacer
-atgtttccggcgtggctgtccgtccggaa	Protospacer
 *.* ..******* *************  

9. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cacg-ccccggcgtcgctgtccgtccggct	CRISPR spacer
-atgtttccggcgtggctgtccgtccggaa	Protospacer
 *.* ..******* *************  

10. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 7, identity: 0.759

cacg-ccccggcgtcgctgtccgtccggct	CRISPR spacer
-atgtttccggcgtggctgtccgtccggag	Protospacer
 *.* ..******* *************  

11. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 7, identity: 0.759

cacgccccggcgtcgctgtccgtccggct	CRISPR spacer
aacgccccgacgtcgctgtccttctgcaa	Protospacer
 ********.*********** **.*   

12. spacer 8.1|3623444|29|CP029541|CRISPRCasFinder matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 7, identity: 0.759

cacg-ccccggcgtcgctgtccgtccggct	CRISPR spacer
-atgtttccggcgtggctgtccgtccggag	Protospacer
 *.* ..******* *************  

13. spacer 9.1|3924133|29|CP029541|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.759

gcctgcctcgaagtggcttacgactggca	CRISPR spacer
acccgcctcgacgtggcttacgacgaata	Protospacer
.**.******* ************ ...*

14. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
cgcggtggcggcgctggccgagcgccacggct	Protospacer
 .*  * ***.*******.************.

15. spacer 2.2|386055|32|CP029541|CRISPRCasFinder matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
tcgcgcgagcggatgcgcgcgcggtgcgacct	Protospacer
   . *************** ***** **** 

16. spacer 2.2|386055|32|CP029541|CRISPRCasFinder matches to NZ_CP007516 (Rubrobacter radiotolerans strain RSPS-4 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

gacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
cacttcgagcggatgcgcgacggggcgatcct	Protospacer
 ****************** * **  *. ** 

17. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 9, identity: 0.719

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
tcctttcgcggcgctggctgcgcgccatcgaa	Protospacer
  *.******.********* ******. *  

18. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
ggatataaagacgccggctgagcgccacgacc	Protospacer
*. . * . *****.**************.**

19. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 9, identity: 0.719

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
ggatataaagacgccggctgagcgccacgacc	Protospacer
*. . * . *****.**************.**

20. spacer 2.1|385994|32|CP029541|CRISPRCasFinder matches to MF140397 (Arthrobacter phage Abidatro, complete genome) position: , mismatch: 9, identity: 0.719

gtgatctctcgcggacgtcgggaccagggtgc	CRISPR spacer
gcagggtgtcgcggacgtcgggaccttggtgg	Protospacer
*...  * *****************  **** 

21. spacer 2.2|386055|32|CP029541|CRISPRCasFinder matches to MG757166 (Gordonia phage SuperSulley, complete genome) position: , mismatch: 9, identity: 0.719

gacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
cgcaaggcccggatgcgcggccggtgggtccg	Protospacer
 .*   *  ********** ******** ***

22. spacer 2.2|386055|32|CP029541|CRISPRCasFinder matches to MF919510 (Gordonia phage Kabluna, complete genome) position: , mismatch: 9, identity: 0.719

gacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
cgcaaggcccggatgcgcggccggtgggtccg	Protospacer
 .*   *  ********** ******** ***

23. spacer 2.2|386055|32|CP029541|CRISPRCasFinder matches to MK376962 (Gordonia phage NosilaM, complete genome) position: , mismatch: 9, identity: 0.719

gacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
cgcaaggcccggatgcgcggccggtgggtccg	Protospacer
 .*   *  ********** ******** ***

24. spacer 2.2|386055|32|CP029541|CRISPRCasFinder matches to MH779499 (Gordonia phage Buggaboo, complete genome) position: , mismatch: 9, identity: 0.719

gacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
cgcaaggcccggatgcgcggccggtgggtccg	Protospacer
 .*   *  ********** ******** ***

25. spacer 2.4|386177|32|CP029541|CRISPRCasFinder matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

actcacggcgtggccgtcaagttggagttgag	CRISPR spacer
cagcgcggcgtgaccgtcaagttcgagtcgta	Protospacer
   *.*******.********** ****.* .

26. spacer 15.2|6671790|31|CP029541|CRISPRCasFinder matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 9, identity: 0.71

ccaggaacggggcggcggagctctcccgaac	CRISPR spacer
tggtgaacggggtggcggagctctccgtgcc	Protospacer
. . ********.*************  . *

27. spacer 15.2|6671790|31|CP029541|CRISPRCasFinder matches to NZ_CP054604 (Sulfitobacter pseudonitzschiae strain H46 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.71

ccaggaacggggcggcggagctctcccgaac	CRISPR spacer
gctggaacggcgcggcggtgctctccatgcg	Protospacer
 * ******* ******* *******  .  

28. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 10, identity: 0.688

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
cgaattcgcggccctggctgagcgccagcgta	Protospacer
 .  ******.* **************  *. 

29. spacer 1.1|378291|32|CP029541|CRISPRCasFinder matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 10, identity: 0.688

gaccttcgcgacgctggctgagcgccacggcc	CRISPR spacer
cgaattcgcggccctggctgagcgccagcgta	Protospacer
 .  ******.* **************  *. 

30. spacer 2.1|385994|32|CP029541|CRISPRCasFinder matches to NZ_CP021368 (Acidovorax carolinensis strain P4 plasmid pACP4.2, complete sequence) position: , mismatch: 10, identity: 0.688

gtgatctctcgcggacgtcgggaccagggtgc	CRISPR spacer
aggcgctctcgcgggcgtcgggacctggaacg	Protospacer
. *  *********.********** **.   

31. spacer 2.1|385994|32|CP029541|CRISPRCasFinder matches to NZ_CP021364 (Acidovorax carolinensis strain P3 plasmid pACP3.2, complete sequence) position: , mismatch: 10, identity: 0.688

gtgatctctcgcggacgtcgggaccagggtgc	CRISPR spacer
aggcgctctcgcgggcgtcgggacctggaacg	Protospacer
. *  *********.********** **.   

32. spacer 15.1|6671733|32|CP029541|CRISPRCasFinder matches to NC_008539 (Arthrobacter sp. FB24 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcgagggagagccccaggaaggccatgaaag	CRISPR spacer
ggtcccggagagccccacgacggccatgatcc	Protospacer
.*.   *********** ** ********   

33. spacer 15.1|6671733|32|CP029541|CRISPRCasFinder matches to NZ_CP011667 (Streptomyces sp. Mg1 plasmid pSMg1-3, complete sequence) position: , mismatch: 10, identity: 0.688

agcgagggagagccccaggaaggccatgaaag	CRISPR spacer
gaggagggagagcccgaggaagaccacgtcgt	Protospacer
.. ************ ******.***.*  . 

34. spacer 15.1|6671733|32|CP029541|CRISPRCasFinder matches to NZ_CP033583 (Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence) position: , mismatch: 10, identity: 0.688

agcgagggagagccccaggaaggccatgaaag	CRISPR spacer
gaggagggagagcccgaggaagaccacgtcgt	Protospacer
.. ************ ******.***.*  . 

35. spacer 2.2|386055|32|CP029541|CRISPRCasFinder matches to NZ_LR536451 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 2) position: , mismatch: 11, identity: 0.656

gacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
ctgatcgagcgggtgcgcgcccggcggcttgt	Protospacer
    ********.***********.**  .  

36. spacer 2.6|386050|37|CP029541|CRT matches to NZ_CP024895 (Amycolatopsis sp. AA4 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703

ggccggacttcgagcggatgcgcgcccggtgggaccg	CRISPR spacer
tggtgtcgcgcgagcggatgcgcgcgcggtgcgacct	Protospacer
 * .*   . *************** ***** **** 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2129900 : 2142352	10	Bacillus_phage(50.0%)	plate,tail	NA
DBSCAN-SWA_2	5684205 : 5692799	6	Bacillus_phage(66.67%)	protease	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP029541|2129900:2142352|DBSCAN-SWA
CATGCCCACCTACCTCTCCCCCGGCGTCTACGTCGAGGAAGTCGCCAGCGGATCGCGGCCCATTGAAGGGGTCGGGACGTCGGTGGCGGCCTTTGTGGGGCTCGCTCCCACCGGTCCGCTCAACGAGCCGACCCTGGTGACGAACTGGTCCCAGTACGTGGCCGCCTTCGGTGAGTTCACGGACGGGTACTACCTCGCCCACTCCGTGTACGGGTTCTTCAACAACGGCGGAACGGCCGCGTATGTCGTGCGGGTCGGCGGTACCGGCGAGGGAGAGCCGCAGGCCGCCGCGGCCCCTCAGACCCCCAGGGCGCTGACTGCCGGGGAGCCGACCGCCCTCGGGGCCTTCAAGGTCTCGGCGATCGCGGCCGGTTCCGCCAACAGCGGGGCGCTCACCGTCGAGGTGCAGGACGTCGAGGGCGAGGGCAGCGCCGACCGCTTCAAGCTGGTCGTCCGGGACGGCGACAAGGTCGTCGAGAGCTTCGACGTCAGCGCGAAGAAGAGCTCGCGGAACTATGTCGTCGCGCAGGTCAAGCAGCGGTCCAAGGCGATTGCCATCGAAGAGGCCGTCCCGGCGGCGCAGGTGACGAAGCCCGACGCGCAGGCCGTCACGCTGGCCCCGCCCGCCCCGGCGCCCGCCGCTCCCGCCGGGAGCGGCGCGGTCGAGCAGCTCGCCTCCGGCCAGTTCATCGGTGACTCCGCCGACCGCACCGGCTTCGGCGGCCTGGAGGCGCTCGACGAGGTGAACATGGTGGCCGTACCCGACCTGATGGCCGCCTACCAGCAGGGCCTGATCGACCTGGAGCAGGTCAAGGCCGTCCAGCTGGGTCTGATCTCGCACTGCGAGCTGATGGGCGACCGGATGGCGATCCTGGACCCGCCGCCGGCGCTCAACGCACGCGACATCCGCAAGTGGCGCCAGGAGATCGCGGGTTACGACTCCCGCTATGCCGCGCTCTACTACCCGTGGATCAAGGCCTTCGACCCGGCCTCGGGCCAGACCCGCATCATCCCGCCGTCCGGCCACATGGCCGGCGTATGGGCCCGTAACGACTCCGAGCGTGGCGTCCACAAGGCCCCGGCCAATGAAATCGTCCGCGGGGCCATCGACCTGGAACTGCAGATCACCCGCGGTGAGCAGGATCTGCTCAACCCGGTCGGCGTGAACTGCATCCGGGCCTTCCCCGGCCGCGGAATCCGGGTGTGGGGCGCACGGACCATGGCCTCCGATCCGGCCTGGCGCTACCTGAACGTACGGCGCTACTTCAACTACCTGGAGGAGTCGATTCTCATCGGCACCCAGTGGGTGGTGTTCGAGCCGAACGACCAGGCGCTGTGGGCCCGTATCCGGCGCAACATCTCGGCGTTCCTGGTGAATGAGTGGCGCTCGGGCGCCCTGTTCGGACAGCGTCCCGAGGACGCGTTCTATGTGAAGTGTGACGCGGAGACCAACCCTGTCGAATCCGTCGACGTGGGACGGGTCGTGTGCGAGATCGGCATCGCACCGGTCAAGCCCGCCGAATTCGTGGTCTTCCGGCTGGCCCAGTTCTCGGGCGGCGGCGGGGAGCTGGAGGAGTAGCAGCCACAGCCTCTTCCCCTTCCTCTCACCCACCACTCATCACCCTTTCCCTTCCCTCAACAGGAGTGAACCACCTTGTCCCTTCAGCCCGGTGATGCCCTCACCTCACACAATTTCGGTCTGCAGATCGACGGCGTGATGGTCGAATACCTGCAGGAGGTCAGTGGTCTGACCATGGAGCAGGACGTCATCGAGTACCAGCAGGTCTCGGCGGACGGAAAGCCCGTCGTGAAGAAGATGCCCGGCACGAAGAAGGCCGGCGAATGCACGGTGACCCGCGGTATGACGCAGAGCGGCGCGTTCAGCGAGTGGATCAACAAGTCCATCGCGGGCGATATGGGTTCGGCCCGTAAGAACGCCACGATCATGATGATGGACTACCAGAACAACCCCGTGAAGCGTTACAACATGCGCAACGCCTGGTGCAGCAAGGTCGAGACCAGCGGGGTCAAGGCAGGCGACACCGCCGCGCTGACCGAGCAGGTCACCATCGTCTTCGAAGAGCTGGTCATCGAGTAATGCGGCGCGACGGTCCGGCGGGGGCGCAACAGCAACGTGAGCCCTTGCGTACGGAATTCGAGTTCGAGTTGCCGCGTGGATTCGTGGACGAGTCCGGGACCGTCCACCGCAACGGCGCGATGCGGCTCGCGACCGCACGGGACGAACTGATCCCGCTGCGGGATGTGCGCGTGCGCGAGAACCCGGCGTATCTGTCGGTCGTGCTGCTGGGCCGGGTCATCACCCGGCTCGGGACGCTCGCATCCGTGCACGACGGGACGGTGGAGAACATGTTCGCCTCCGATCTGGCCTTTCTGCAGGACTTCTACCGGCAGATCAATGCGGAGGGGCACACGCGCGCCGCGGTGTCCTGCCCGCACTGCGAGGAGCCCTTCGAAGTGGAACTGGCCGGGAGCCGCCTGGGGGAATCGTGACGTACGCGACCGGGCGTATCGAGGAGGAAGTCGCCTATCTCGCCTACCACTTCCACTGGGGCATCGACGACATCCTCGACCTCGAACACGCCGACCGGCGCGCGTACGTGTCACAGATCGCCGCCCTGGTGGAGCGGGCTGAACGGGAGCAGTGACTGAGGATGGGGTTGTTCAGGTGGCGGCGGGGGTCGCGGGGTGCCCAGGAGGCGGAGCGTGCGCAGGGGCCTGAGGTCGGGACGCCCGCGGAGGCTCCGGCCGGGAGCGCGGACGGTGGCGGCGGTGGCGGCTGGTCCGCCGCGCCCCCCATCCAGCGGGTCCTGGGGGCGCCCCGCACCGTCGCGGAGGCCGGCTTCGCCGCGTCGCTGAGCGCGCACCGCAACCCCTCCTTCGGAGGGGAGCTGGGGCACGACGTCCGTGCCACGGCACCCGGTGGTGTCCTGCGCGATGCGCTGGTGCCCGTCGTCGGCCGCCCCGCCGAACTGGGTCTGCCGGCCTTGCGACTTCCGGTCGCGGGGCGGGTGGACGAGACGGCTGACGGGAGCGCGGGGGCGGCCTCGGGGTTCGCAGCCGCGCCGGGGACAGGTACGGGCGCCGGGCGTGGCTTGGGCGCGGGGCGAGGCGCGAGCGAGGCGCGCGACATGGGCGCGGGGCAGGGCGCCGGGGTTCGTTCCGGGCTTCATGGCGGGCCTGGGGGTGAGGTGCGTACCGAGGCGCGAGGCGGGGCGGCGGCCGTGCAGCGGGCGGCGGCGACGGGGGCGCCGCGTGCCCAGGCTCAGGGTGCGGCGCGGAGCCAGGCCCAAGGTGGGGCGGCCGTGCAGCGGGCGGCGGCGACGGACGCTCCTCGTACCCGGACCGAACGTGCCGCACGTCCCCGGACCCAAGAGGCGGCACCTACCGAAACCCAAGGCGGAGCTCCCATACAGCGGGCGGCGGGTCCGGGTGCTCCGCGTGCCCGGGCGACTGCCGCGCGCGCTCCCCGTCAACCGGCTTCGGGGAGCGAGACGTCGTCCGCGCCCCCGCGGAACGACGCGCCGAGCGCAGCGTCGGCCATGTCGCCGGGCACGCCTCCGGTCGCCTCGGCGGCCGGGCCGTCGGCCGGGCCGTCCGTCACCCCGTCTGCCGCGCGGCCCGTCACGCCGTCCTCCGAGCCGTCGGGCGCCCGGCGGGGTGGACAGCCGAGGTCGGCGGTGACCGAGACGGCGTCCGGGGGTGCCGGGAGTGCCGGCGGTGCGGGTGGGGGTGGCACGGGTGGGCCCGGTGGCAAGGCCACCGCTGGTGTCACGACCGTGCCCGGTGCCGAGGCCGTACCCGGTGGCGGAGTTGAGGCCGCTCGCTCCGCGTCGCGTGGGGTGCGGCCCACCAGCCACCCCTCAGCCATGCCGGTAGCGATGCCCATGCCCGTACGGAAGGCCGTCGGCGGCCGGTCCCCGCTCACCTCGGCAGGCAAGGTCCCGATGCCACCGCGCCGGCTGCGGCCGGCCACCTCGTCGCATCCGGGGAGCAGCGACACCGCCCCCTCCCCCACCAACACGCCCTTGCAACGCGCCGAAGCGCCGGCACCGGCTCCGGCGGCCACGACGGCTCCGGCGGCCACGACGGCTCCGCTGGCCACGACGGCTCCGGAAGCGGCGCCCCCCGTCTCGTCTCCCTCACCCCGCCCCCCTGCCGCCGGACCGGCGAGCGAGGGTGCGGCAGCGGCCCCCGCTGCTGTACGGCCCGACACCCCTCAACGGGTCGTACAGCGGCGGGCGGTTGGCCGACGCCGACCGAGCGCCCCGAACCAGAGCGGCGCGCCGGAGGCCGCCCTGAGCACGGACGCCGCACCCGGCGCCGGCCCGGCGCCGAGCGGTGACTCGACCTCGTCGGCTCCGGGCACAGCACCGAGCGCGAGCGCTGCCCCGAACCCACGACCGGTCTCCCCTCCCTCCTCGCCCGCGAGCACGCCCTCACGCGCGAACGCCGACACCAGCGATCACGCGGCCCCGAGCCCGGCAGCCACGAGCCCGGCACCAGGCCCGGCCGCGAGCAACAGCGACCGAACGCGTCCGCCGGTCCAGCGAGCAGCGAGGGAAGAGGGCCACCAGCCCTCACGGCGGACCTCAGCAACAGGCAGTCGGCGCCTGGGACTTGGAGCGCCGCTGCTCCCGAGTACGGACACCGAGAGCCCCGTCAAGGACGTTGCGGCCGACGTGCAACCGGCCAAGCCTCCTGCCAACAAGGGACGTACGCCGGGCCCCGGACAGTCCACGCAGCCCACGCAGCCCACGGTCCGACGGAAGCCACTGATCGGTGCACCCGCCGAGTCCGCCAGCGTGCCCACCGAGTCAGCCGCGATCCGCCACCAGGACGCTGCACCGACGCCTGCCCCTGCAGCGACGCCGACGCCTAGGGCGACGCCAGCACCAGCAGCGACACCGACACCGACACCAGCACGAACGGCGCCCTCGACGCCGGCCCAAATACCCACAACGCCCCAAACACCTGCTCCAGCCGCAGCCTCCGCCTTCGCCCCCGCCCCCGCCCCCGCCCCCGTGCAGCGCTCCGCGACGGCCATCGAACGTGGCACCTCCGCTGGGCCGTTAACGACGCCACGTACATCGGAGAGCCGTACACCGAAGAGCCGCACATCCGAGACCCACACGCCGGAGCCCCACACGCCGGAGCCCCACACGCCGGAGTCCCGCACGCCGGAGTCCCGCACGCCGGAACTCCACCCACAGGAATCCCACCCGCGGGAACCCCGCACACCGCAATCCCACGCCCAGGGCTCCTTCACCCCCACGAAGCAAGTGCTGACGACCAGCGCCCTTCGCCCTCCCCTGGCCACTCCCCTCCCCGCCCGCCGAGCGCCGCTCGTGTCGGCCCGTGCGCTGGACCCCATCACCCGGCAACGGCCCACCGGTCAGGGGGCGGAGGCCACCGGCCCCGACGCGGTGCAGCGATCGAGCGTGCAGGCGGCACCCGCCGTCCCCCTCCGCACCGTGGCGAGCCCGACGAGCACGGAGAGCGCAAAGAGCCCAGCCGGCACAGCGGGACGGTCACCCCGACGAACGGCCGTCCCTGCCGTCGCCCTGCAGAAACCGGCATCGGCGCCGGCACGGACACCGAGCCCCTCGCACACTCCCTCTCGTACGGTCCGGACCGCACCGAACCTCCCCACCACCCCCGTGATCCGGCATGCGCCAACCGCTCCGGGGATGCGAACCGCTCCCGGCATCCCGGCTTCAGCCCCAGCTCCGGCCCCCCAGCCCCTCACGTCAGCCGCCCTCCCCAGACAGGCACCGTCAGCCACACCCCCCGGCCCCGCTCCGACAGCAACCTCCCGCCCTATCCAGCGGGCCCCGGGCTCCTCCACAACCGCCCCCACACCCCCAACCCCCGCAGCAGCCACCCCAAGAACCACCCCAACCACCCCAACAGCCCCCACCACCACACCCACCACACCCACCTCAACCGACCCCACCACCTCCACCACACCCCCCACCCCCACCGACCCGGCAACCCTCGACGCCCTGGCCCGCCGGCTGGTGGCGCCCCTCTCACGCCTGCTCCGCGCCGAATTGCGCGGCGACCGCGAGCGCATAGGACGACTGCGCGACCACGGCCGCTGACCCACGCCCAGCCCTCTCCAGCCCAGTCGCCCCCTCCAGCCCGGTCGCCCACCAGCCCCGCCCCCGTCCCCATCCCCCTCCAGCCCCGCCCACCACCTGACCGAAAGAACCACCCACCATGCCCCAGGCCCAGGACCCCGGTTCCACCGTCTTCTTCAAGCTGACCATCGACGGCCAGGACCTCGGCCTGTTCAACGGCTGCGACGGCCTGGCCTCCGAGGTGGAGGTGGAACAGCGGCAGGAGGGCGGCAACAACGGTTTCGTCTGGCAGTTGCCGACCCGCGTGACGTTCTCCACGATCCGTCTCACCCGCCCGCTCACCGCCGACACCTCCCGTGTGGCCGCGTGGATCTCGTCCCTCGCCACCGGCATCAGCCGGCCCACCGCGCAGATCGCCGCGCTTCGCGCCGACGGCTCGGTCGTCGCACAGTGGGGGCTGGTGGAGGTGCTGCCCGTGCGCTGGCAGGGGCCGAGCCTGGACCCGTCCAGCCCGGGTGTGGCGACCGAGACGCTGGAGATCGCGCACCACGGGTTCACCGACGCGGGAGGTGCCTGAGGTGGCCGCACCGACCGGCGGCAAGGCGGGCGCGAGCCTCGTACGGGCCGCTCTCGCGATCCACCAGCCCCCCACCGACCTCGGCGGCTCCATGGGCGGCCGCATGGGTGAGGTGGAGTTCCAGTTCAATCCGACCCAGTTGCAGCTCGGGCGGGAGGCGGAGTGGCACACCCAGACGGCGGTCGCCTATACGCGGGGCGCACCTCCCAAGTTCACCGGCACCCGGCCCGCCACGCTCCAGCTGGAGGTGTTCCTGGACGCCTCCGGCACCCCGAATTCCGGCAAGGTGCAGAAGCAGATCGAACTGCTGCTGTCCTGCTGCGAGGTGACGGCACAGAGCGTCAACTCCAAGCGGCCGTCGCCCCCTTGGGTGCGGTTCTCCTGGGGGTCGTTCAACACGGTGCAGTTCGTGGCGTACGTGACGAGCGTCAGCGCCACCTACACGCTGTTCAACCCCACCGGGGAGCCTATCCGCGCCACCTGCACGCTGTCCCTCACCGAGGTGGCCATGCCCACCAAGGGGCAGAACCCCACCTCCGGTGCGCTCTCCGCACGCCGCATCCACCGCACGGTCGCGGGTGACTCGCTCGCCTCGCTGGCCTGGCGGGAGTACGGGGACGCGACCCGCTGGCGGCTGATCGCGGAGGCGAACGCGATCGACGATCCGATGCGGCTGCGGCCGGGCACGGAGCTGCTGCTGCCCGCCGCCGACGAAGACCCGCCTGAAGGCCGTCCCCCGAGCCTTCCCCCGCAGCCCACAACCCACGAGGCCGCCCGATGAGCAGCGAGAGCATCCGATGAGTGAGAAGACGTACACCAGCGTCCTGTACGCCGAGATCGGCGGCACGCCGCTGCCCGACAAGCTCGCCACCCTCCTCATCGAGGGCTGGGTGGACGCGAGCGTGAATGTCCCGTCCGCCTTCCAGCTCACCTTCAGTGACACGGGGTCGGACATCCTCAAGACCTTCCCGCAGATCAAGGTCGGCGCGAAGGCGGTGCTGTCACCCTTCACGGACGGGCGGCGCGGTACGCCCATGCTGACCGGCGAGATCACCGCTCTTGAGGTGGACGCGGACGCCAGCGGCAAGTACCTGGTCGTCCGGGGATACGACCCGGGGCACCGGCTGCTGCGCAACCGCCGGGTCGCGGGCTACCCCAATATGACCGCGAGCGACATCGTGCGCCGTCTCGCCGGTCTCAACAAGCTTTCCCTCGGCAAGGTGGAGCCCACCCGCACCGTCTACGAGCTGGCCACCCAGCCCAACATCACCGACTGGGACTTCCTGCTCCGCCTCGCCCAGGAGAACGACGTCCATCTCTCCTTCGACCCGAAGGGCAAGCTCCAGTTCGGCAAGCTCTCCCCGGCCTCGTCGGCGCCCGCCGGCAGCACACCGGCCGCGCAGAGTCCGTACGTCCTGGAGTTCGGCCACAACGCGATGCACAGCCGGATCGCCGTCACCGCCGCCGGGCAGGTCGACAGGGCGGGCGCGCGCGGCTGGGACATGCGGGCCAAGCGTGCGCTGTCCGCGCAGTCCCCGGCCACGACGAGCAAGGACATCGTCGCGGACATCACGCCGGGGCAGCTCAGCAAGCCGTTCGGGAAGGCCGAACTGACCGCCACGGACACCCCGTTCACCACCCAGGCCCAGGTGACCCATGCCGCGCGGGCCCTCGCCGACGACGCGGCGGGCTCGTTCGCCGAGCTGGAGGTGGCGGTCACCGGGAATCCGGACCTGAAGCCGGGACAGCCCGTGGCGCTGAAGGGCGCCGGCTTCCCCTTCGAGGGGAAGTACACGGCGACCGGTGTCCGCCATGTCTTCGAGTCCGGGCGGCCGTTCACCACCTGGCTGACCGTCTCGGGGCGGCAGTTCCGGTCGCTGTACGGGCTCGCCTCCGGCGGTGCGGACCCGGCGCCGCCCATGCCGGGCGTGGCGATGGCGCTGGTCAGCAATGCCAAGGACCCGCTGCGGCTGGGCCGGGTCAGGCTGCGCTTCCCCTGGCTGTCGGACACCTACGAGAGCGACTGGTGCCGGGTCGCGCAGCTGGGCGGCGTACGGGGCGGCGGGCTGGTCCTGCCGGAGGTCGGCGACGAGGTGCTGTGCGCCTTCGACCGGGGTTCGCTGGAGCATCCGTATGTCCTCGCTGGGCTCTACAACGGCCGGGACAAGCCGCCCCGGGAGCCGGACGGTCTCCCCGCCATCGACCCGACCAGCGGGCGGGTCAACTGGCGCAGCTTCGCCTCGCGCAGCGGTCACATCGTCGAGCTGCTGGACGCCAAGACCCGGATGAAGAGCGGTATCCGGCTGCAGACCGGCAACGGCAGGATGACCGTCCACATGGACGAGGCGCGCACCAGCGTCACCATCCGCAGCGACGGTTCCGTCTCCATCACGGGGACCCGGAACGTGAGCATCAAGGCGGGCGGCAACCTGTCGCTGACCGCGGGCGGCTCGCTGACGATGAGCGCCGGCGGGGCGGTCGACATCAAGGCGGGCGCCAAGTTCGGCGTCATGGCGGGAGCCGTGGCGGACATCAACGCGACCGGCGCCATCAGCCTCAAGTCGGCCGGCGCGGTGGCCGTCAACTCGGTCGGCGCGGTCTCCGTCAGCGCGGTCGGCGCGGTGGCCGTCAACGCGGGCGCCGCGGCAGCCATCAACTCGCCGGCCACGGTCACGCTGAACGCACCGGCCGTCCTGCGCAACGGCATTCCTTTCTAGGGAGTCGAGGAAGGTGAGGGACATGCATCTCAAGGGGCACCGGACATGAGTGAACAGTTCGTCGGTGCGGGCTGGAGCTTCCCGCTGCGTACCGACGCGGGCGGCGGTATCGCACTGGCCCGCCGCGAGCGGGAGATCGAGGAGTCGATCCGGCTCGTCCTCGCCACCGCGCCCGGTGAGCGCCCGATGCGGCCGGAATTCGGCTGCGCCGTCCACGACATGGTCTTCGCGCCGGTCAACGAGGCGACGGCCGGGCGCATCCGCTACGAGGTGCGGTCCTCGCTCGACCGTTGGGAACCGCGTATCGAGGTCCAGGACGTCGAGGTCAGCCCGGCGCCCGACGATCCGTCCGTGCTGTTCATCGACGTGCGCTACAGCGTGCGCGGCACCAACAACCCGCGCAGCCTCGTCTTCCCCTTCTATGTGATCCCGTCCACGGAATCCCCCTCCACCGCGTCCGCCGCGTCCACCGAAAGCGAAGCCTGATGGCCCTGCCCGCACCCCATCTCGACGACCGTCGCTTTCAGCAGTTCGTCGACGACGCCAAGCGCTACATCCAGCAACGCTGCCCCGAGTGGACCGACCACAATGTCTCGGACCCCGGAGTGACCCTCATCGAGGCCGTCGCCCATATGGCCGACCAGATCGTCTACCGGCTCAACCGGGTGCCGGAGAAGAACCATCTGGCCTTCCTCGACCTGCTGGGCGTCACCCTCTTCCCGCCCTCCGCCGCCCGCGCCAACGTCACCTTCTGGCTCTCCGCCCCGCAGCCCGAGCCGGTCGTGCTGCCCGCCGGGACGGAGGTGGCCACCGGACGGACCGAGACCGAGGAGGCGGTGGTCTTCGCCACCGAGGACGATCTGACGGTCGTGCCCTGCGAACTGTCCGCCGTACTGCGGCAGGAGGCGGGCACCACCCCCGAGGACTGCGGCCAGGACGTCTTCGGCGGCCGCGACGTTGCCGTCTTCGCGGCCGCCCCGCAGCCGGGCGACACCCTCCTGTTCGGGCTGTCGGCGGCGGTGCCGCGGTGCGTGGCCGTGCTGCAGCTGGACAGCCGGGTGGACGGGGTCGGCGTGGACCCGCGCCAGCCGCCGCTGCGCTGGGAGGCGTGGACCGCGGACGGATGGGCGGAGTGCGAGGTCGAGGAGGACTCCACCGGCGGCCTCAACCGGCCCGGCGAGGTCGTGCTGCACATCCCGGCCGGGCACCTCGTCTCCCGTGTGGGCAGGACGGATGCCGCGTGGCTGCGCTGCCGGGTCGTCGAGGCCGCGCCCGGCCAGCCGTTCTACAGCGCCTCGCCGACCGTACGGTCCGCCTCCGCGTTCACCATCGGGGGCACGACGAGGGTCGCGCACGCCGTCGTGGTGCAGGACGAGCTGCTCGGCGAGTCCGCGGGCGTGCCCGGCCAGCGGATACGCCTGGCACATGCACCCGTCGTCGCCGACCGCCCGCCGCTGCGGCTGGAGGTCTCGGACGGCGACGGCTGGCACGAGTGGCAGGTCGTCCCCGACTTCGCGTCCTCCGGCCCGCACGACCGGCACATCACACTGGAGGAGGCCACCGGTGAGATCGCCTTCGGCCCGTCGGTCCGCCAACCGGACGGTTCGGTACGGCAGTTCGGGGCCGTGCCCGCCAAGGGCTCGGTGATACGGGCCGCGCACTACCGCACGGGCGGCGGGCGGTCGGGCAATGTGGCGCGCGGCGCGATCCAGGCGCTGCGCAGCTCGATCCCGTACGTGGCGCGCGTGGAGAACCGGGAGGCCGCGCGCGGCGGGGTCGACGGCGAGACCGTGCAGGAGGCGAAGGTCCGCGCGCCGATCACGCTCCGCGCGCAGGAACGGGCCGTGACCGCCCGCGACTACGAGGAACTGGCGCGGCGCGCCGCCCCGGAGGCCGCCCGGATCGCCTGTCTCGCGGTCGATCCCGCCGAGCCCTCGACGGCCACCCCGAGCACCGCGGGCGCGTCGGGCCCCGAGGCCGGCCAGACCGGCCGGACCGGCGAGAACGCCGTCCGGGTCCTGGTCGTCCCCCAGGCCGTCCCCGACCGCGGCGGCCGGCTCCGCTTCGAACAGCTGGTGCCGGGGGAAGAACTCCTGGGCCGTGTCACGCAGTTCCTCGACGAGCGCCGCCCGGTGGGCACCCGCCTCGCGGTCGGCCCGCCCTTCTACCAAGGCGTCACGGTCGTCGCGACGCTGCACTCCTTCCGTGCGGCGCGGGCCGACCGGGTACGCGCCGAGGCCCTGGACGCGCTCTACGCCTACCTCGACCCGCTGACCGGTGGGGCCCATGGCGACGGCTGGCCCTTCGGCCGCCCACTGCGCTCCGGTGAGATCTTCGCGGCCCTGCAGCGGGTGCCCGGCGTGGAACTCGTCGACGAGGTCCTCCTGCACCCCGCCGACCCGCTCACCGGCCGCCGCGGCGACGCCACCGACCGCATCGAACTCGCCCGCTCCGCGCTGCTGTTCCCCTTCGACCACCGCGTCCGCGTGATCGAGGCCCGATGAGGGGCACCCCCGCGGGGATGGTCTCCCCGCACCCCCTGGGCGGACAGCTCCCCGCGGTCTACGCCGACGACGACTTCGTCCAGCGCTTCGTCGAGGGCCTCGATGTCGTCCTCGCCCCCCTCTTCAACGTCCTGGACTGCCTGGAGAGCTACTTCACGCCCGCCCTCGCGCCCGAGGACTTCGTCGACTGGCTGACCACATGGGTCGGCACCGAACTCGACGGGACGGAACCGCTGGCCACCCGCCGCCGCGCGGTGGCCACGGCCATCTCGCTGCACCGGGTACGCGGCACCCGGCGCGGCCTGTCGGACGCCGTCCAACTGGCCTTCGGAGTACGCCCGGAGATCATCGAGAGCGGCGGGGCGACCTGGTCGCGGCGTCCGCTCGGTACCTTCCCGGGCTCGCCGCACCCCGGCCTGCGGGTCACCCTGCGGGTCCACGACCCCGCCGCCGTCGACCCGCACCGTCTGCACGCCGTCGTCGCGGCGGCCCGCCCCGCACACCTCCCCTTCGCGGCCGAGGTGACCCACCTGCCCACCCCTGAAGGAACCTGA

Protein sequences of DBSCAN-SWA_1

>CP029541|2129900:2142352|2141794_2142352_+|AWN26136.1|tail|DBSCAN-SWA
MRGTPAGMVSPHPLGGQLPAVYADDDFVQRFVEGLDVVLAPLFNVLDCLESYFTPALAPEDFVDWLTTWVGTELDGTEPLATRRRAVATAISLHRVRGTRRGLSDAVQLAFGVRPEIIESGGATWSRRPLGTFPGSPHPGLRVTLRVHDPAAVDPHRLHAVVAAARPAHLPFAAEVTHLPTPEGT
>CP029541|2129900:2142352|2129900_2131478_+|AWN26127.1|tail|DBSCAN-SWA
MPTYLSPGVYVEEVASGSRPIEGVGTSVAAFVGLAPTGPLNEPTLVTNWSQYVAAFGEFTDGYYLAHSVYGFFNNGGTAAYVVRVGGTGEGEPQAAAAPQTPRALTAGEPTALGAFKVSAIAAGSANSGALTVEVQDVEGEGSADRFKLVVRDGDKVVESFDVSAKKSSRNYVVAQVKQRSKAIAIEEAVPAAQVTKPDAQAVTLAPPAPAPAAPAGSGAVEQLASGQFIGDSADRTGFGGLEALDEVNMVAVPDLMAAYQQGLIDLEQVKAVQLGLISHCELMGDRMAILDPPPALNARDIRKWRQEIAGYDSRYAALYYPWIKAFDPASGQTRIIPPSGHMAGVWARNDSERGVHKAPANEIVRGAIDLELQITRGEQDLLNPVGVNCIRAFPGRGIRVWGARTMASDPAWRYLNVRRYFNYLEESILIGTQWVVFEPNDQALWARIRRNISAFLVNEWRSGALFGQRPEDAFYVKCDAETNPVESVDVGRVVCEIGIAPVKPAEFVVFRLAQFSGGGGELEE
>CP029541|2129900:2142352|2131553_2131997_+|AWN26128.1|tail|DBSCAN-SWA
MSLQPGDALTSHNFGLQIDGVMVEYLQEVSGLTMEQDVIEYQQVSADGKPVVKKMPGTKKAGECTVTRGMTQSGAFSEWINKSIAGDMGSARKNATIMMMDYQNNPVKRYNMRNAWCSKVETSGVKAGDTAALTEQVTIVFEELVIE
>CP029541|2129900:2142352|2131996_2132410_+|AWN26129.1|DBSCAN-SWA
MRRDGPAGAQQQREPLRTEFEFELPRGFVDESGTVHRNGAMRLATARDELIPLRDVRVRENPAYLSVVLLGRVITRLGTLASVHDGTVENMFASDLAFLQDFYRQINAEGHTRAAVSCPHCEEPFEVELAGSRLGES
>CP029541|2129900:2142352|2133389_2134022_-|AWN26130.1|DBSCAN-SWA
MASGAVVAAGAVVAAGAGAGASARCKGVLVGEGAVSLLPGCDEVAGRSRRGGIGTLPAEVSGDRPPTAFRTGMGIATGMAEGWLVGRTPRDAERAASTPPPGTASAPGTVVTPAVALPPGPPVPPPPAPPALPAPPDAVSVTADLGCPPRRAPDGSEDGVTGRAADGVTDGPADGPAAEATGGVPGDMADAALGASFRGGADDVSLPEAG
>CP029541|2129900:2142352|2139779_2141798_+|AWN26135.1|plate|DBSCAN-SWA
MALPAPHLDDRRFQQFVDDAKRYIQQRCPEWTDHNVSDPGVTLIEAVAHMADQIVYRLNRVPEKNHLAFLDLLGVTLFPPSAARANVTFWLSAPQPEPVVLPAGTEVATGRTETEEAVVFATEDDLTVVPCELSAVLRQEAGTTPEDCGQDVFGGRDVAVFAAAPQPGDTLLFGLSAAVPRCVAVLQLDSRVDGVGVDPRQPPLRWEAWTADGWAECEVEEDSTGGLNRPGEVVLHIPAGHLVSRVGRTDAAWLRCRVVEAAPGQPFYSASPTVRSASAFTIGGTTRVAHAVVVQDELLGESAGVPGQRIRLAHAPVVADRPPLRLEVSDGDGWHEWQVVPDFASSGPHDRHITLEEATGEIAFGPSVRQPDGSVRQFGAVPAKGSVIRAAHYRTGGGRSGNVARGAIQALRSSIPYVARVENREAARGGVDGETVQEAKVRAPITLRAQERAVTARDYEELARRAAPEAARIACLAVDPAEPSTATPSTAGASGPEAGQTGRTGENAVRVLVVPQAVPDRGGRLRFEQLVPGEELLGRVTQFLDERRPVGTRLAVGPPFYQGVTVVATLHSFRAARADRVRAEALDALYAYLDPLTGGAHGDGWPFGRPLRSGEIFAALQRVPGVELVDEVLLHPADPLTGRRGDATDRIELARSALLFPFDHRVRVIEAR
>CP029541|2129900:2142352|2139339_2139780_+|AWN26134.1|plate|DBSCAN-SWA
MSEQFVGAGWSFPLRTDAGGGIALARREREIEESIRLVLATAPGERPMRPEFGCAVHDMVFAPVNEATAGRIRYEVRSSLDRWEPRIEVQDVEVSPAPDDPSVLFIDVRYSVRGTNNPRSLVFPFYVIPSTESPSTASAASTESEA
>CP029541|2129900:2142352|2136578_2137358_+|AWN26132.1|DBSCAN-SWA
MAAPTGGKAGASLVRAALAIHQPPTDLGGSMGGRMGEVEFQFNPTQLQLGREAEWHTQTAVAYTRGAPPKFTGTRPATLQLEVFLDASGTPNSGKVQKQIELLLSCCEVTAQSVNSKRPSPPWVRFSWGSFNTVQFVAYVTSVSATYTLFNPTGEPIRATCTLSLTEVAMPTKGQNPTSGALSARRIHRTVAGDSLASLAWREYGDATRWRLIAEANAIDDPMRLRPGTELLLPAADEDPPEGRPPSLPPQPTTHEAAR
>CP029541|2129900:2142352|2136139_2136577_+|AWN26131.1|tail|DBSCAN-SWA
MPQAQDPGSTVFFKLTIDGQDLGLFNGCDGLASEVEVEQRQEGGNNGFVWQLPTRVTFSTIRLTRPLTADTSRVAAWISSLATGISRPTAQIAALRADGSVVAQWGLVEVLPVRWQGPSLDPSSPGVATETLEIAHHGFTDAGGA
>CP029541|2129900:2142352|2137374_2139294_+|AWN26133.1|DBSCAN-SWA
MSEKTYTSVLYAEIGGTPLPDKLATLLIEGWVDASVNVPSAFQLTFSDTGSDILKTFPQIKVGAKAVLSPFTDGRRGTPMLTGEITALEVDADASGKYLVVRGYDPGHRLLRNRRVAGYPNMTASDIVRRLAGLNKLSLGKVEPTRTVYELATQPNITDWDFLLRLAQENDVHLSFDPKGKLQFGKLSPASSAPAGSTPAAQSPYVLEFGHNAMHSRIAVTAAGQVDRAGARGWDMRAKRALSAQSPATTSKDIVADITPGQLSKPFGKAELTATDTPFTTQAQVTHAARALADDAAGSFAELEVAVTGNPDLKPGQPVALKGAGFPFEGKYTATGVRHVFESGRPFTTWLTVSGRQFRSLYGLASGGADPAPPMPGVAMALVSNAKDPLRLGRVRLRFPWLSDTYESDWCRVAQLGGVRGGGLVLPEVGDEVLCAFDRGSLEHPYVLAGLYNGRDKPPREPDGLPAIDPTSGRVNWRSFASRSGHIVELLDAKTRMKSGIRLQTGNGRMTVHMDEARTSVTIRSDGSVSITGTRNVSIKAGGNLSLTAGGSLTMSAGGAVDIKAGAKFGVMAGAVADINATGAISLKSAGAVAVNSVGAVSVSAVGAVAVNAGAAAAINSPATVTLNAPAVLRNGIPF

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN26127.1|2129900_2131478_+|tail	phage tail protein	J9PVC2	Bacillus_phage	9.9e-69	33.8
AWN26128.1|2131553_2131997_+|tail	phage tail protein	NA	NA	NA	NA
AWN26129.1|2131996_2132410_+	hypothetical protein	NA	NA	NA	NA
AWN26130.1|2133389_2134022_-	hypothetical protein	NA	NA	NA	NA
AWN26131.1|2136139_2136577_+|tail	phage tail protein	NA	NA	NA	NA
AWN26132.1|2136578_2137358_+	LysM domain-containing protein	NA	NA	NA	NA
AWN26133.1|2137374_2139294_+	type IV secretion protein Rhs	NA	NA	NA	NA
AWN26134.1|2139339_2139780_+|plate	baseplate protein	A0A0E3FHN9	Synechococcus_phage	6.4e-10	33.3
AWN26135.1|2139779_2141798_+|plate	putative baseplate assembly protein	NA	NA	NA	NA
AWN26136.1|2141794_2142352_+|tail	phage tail protein	NA	NA	NA	NA

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>CP029541|5684205:5692799|DBSCAN-SWA
TGTGTTGGTCCGACTAGCGCGGGCGCATCTGCGGCCCCACAGGCGCTCGATATCCCTGATCGTTCTGCTCCAGCTCATCCAGACCCTGGCCACTCTCTACCTGCCCACCCTCAACGCCGACATCATTGACAACGGTGTCGTGAAGGGGGACACGGGCTACATCCTCCGTGTCGGCGGCTACATGGTCGCCGTCACCCTGCTGCAGATCGTCTGCGCGATCGGTGCCGTCTACTTCGGCGCCCGTAGCGCCATGGCGCTCGGCCGGGACATCCGCGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGGGAGGTGGGCGCCTTCGGCGCGCCGTCGCTGATCACCCGGACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCACGATGATGGTTTCGGCGCCGATCATGTGCGTCGGCGGCGTCATCATGGCGCTCAATCAGGATGTGCCGCTGTCCGGCCTGCTCCTGGTCATCGTCCCGGTCCTCGGGATACTCGTCTCACTGATCGTGCGCCGGATGCGTCCGCTGTTCCGCGGGATGCAGGAGCGCATCGACACCGTCAACCGCGTACTGCGCGAGCAGATCACCGGTATCCGCGTCATCCGCGCCTTCGTCCGCGACCGGCACGAGCGCGAGCGGTTCGCCGGGGCCAACACCGATCTGTACGACGCGTCGCTGCGCGCCGGCCGGCTGATGTCGATGATGTTCCCGCTGGTCATGCTGATCGTGAACGTCTCCAGCGTGGCCGTCGTCTGGTTCGGCGGACTGCGCATCGACAGCGGCTCCATGGAGATCGGCGCGCTGACCGCGTTCCTCAGCTACCTCATGTACATCCTGATGTCGATCATGATGGCGACGTTCATGGTGATGATGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGCGACCGACTCCAGCGTCACCCCGCCCGAGCACCCCGTCACCGAGCTCCGTCGCCACGGCGAACTGGAGCTGCGCGGTGTCGAGTTCCGCTTCCCGGGTGCCGAGCAGCCCGTCCTCAGGGACATCTCGCTGACCGCCCGCCCCGGTGAGACCACCGCCGTCATCGGCTCGACCGGCAGCGGCAAGTCCACCCTCCTCGGGCTCGTCCCCCGCCTCTTCGACGCGACCGGCGGCACGGTCCTGGTGGACGGCGAGGACGTCCGCACCCTCGACCAGGAGACGCTGGCCAAGGCCATCGGCCTGGTCCCGCAGAAGCCCTATCTCTTCTCCGGCACCGTCGCCACCAACCTCCGTTACGGCAATCCGGACGCCACCGACGACGAGCTGTGGCACGCCCTGGAGACCGCCCAGGCGAGGGACTTCGTCGAGCGGATGGAAGGCGGCCTGGAGGCCCCCATCGCGCAGGGCGGCGGCAATGTCTCCGGCGGCCAGCGCCAGCGGCTGGCGATCGCCCGCGCCCTGGTGCGGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTGGACTACGCGACGGACGCCGCGCTGCGCGCCGCCCTCGCCCGCGAGACCGACCGGGCCACGGTCGTGATCGTCGCCCAGCGGGTCTCCACGATCCGCGGCGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCACCCACGCCGAGCTGATGGCCGGCAACGAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCGTGACCACCGCGGACAAGGGGGCGGCGGCCCGGGCCGAGGCCCCGGCGGCCACCGAGGAGACCCCTCCGATGGCCTCCCGACGAGGCCCGGCCCCCGCGGTCGGGCCCGGACGGATGATGGGCGGCCAGCCCACCGAGAAGTCGATGGACTTCAAGGGCTCCGGCAAGCGCCTGCTGGCCCAGATGCGGCCGGAGCGCGGCATCATGAGCCTCGCCCTGGCGCTGGGCGCGCTGAGCGTGGCACTGACGGTCGTCGGCCCCAAGGTCCTCGGCCACGCCACCGACCTGATCATGTCCGGCATCATCGGCCGGCAGCTGCCCGACGGGCTCACCAGGGCCCAGGCCGCCGAACAGCTCCGCGCCCACGGCCAGGACGGGCTCGCCGACATGATCGGCACGATGCCGGTCGTCCCCGGCCACGGCATCGACTTCGGCGCCGTCGGCCAGGTCCTGCTCTGGGTCACCCTGATCTATGTGGCCGCCTCACTGTTCGGCTTCGTCCAGGCCAGGATCGCCACCCGGGTGGTCCAGCGGGCCGTCTTCCGGATGCGCGAACAGGTCGAGGAGAAGCTGGCCCGGCTGCCGCTGAGCTACTTCGACAAGCAGCAGCGCGGCGAGGTCCTCTCCCGGGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCTCAGCCAGATCGTCGCCTCGCTGCTGACCATCGTCGGCGTGCTCGCCATGATGTTCTGGATCTCCCCGCTGCTGGCCCTGGTCGCCCTGATCACGGTCCCGGTCTCGGTCGTCGTCGCCACCAAGGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCAGCAGTGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAGCCTGGTGAAGGTCTTCGGCCGCCAGCGGGAGTCCGCCGAACTCTTCCGCGAACAGAACGAGGCCCTCTACGCCGCCGGCTTCAAGGCCCAGTTCATCTCCGGGATCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTCCTGGTGGCGGTGGTCGGCGGCCTCCGCGTCGCCTCCGGGGCCCTGTCCATCGGCGACGTCCAGGCCTTCATCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTCGCCTCGATGGCCAACCTCGTCCAGTCCGGTGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCACGGAGCAGGACCCCGACCCCGCACAGCCGGCCCGCCCCGAACGCATCGAGGGCCGGGTCGAGTTCGAGGACGTCTCCTTCCGCTACGCACCGGACAATCCACTCATCGAGGACCTCTCGCTGGCCGTCCACCCCGGCCAGACGGTGGCGATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTCGTCAACCTCCTGATGCGCTTCTACGAGGTGAGCGGCGGCCGGATCACCCTCGACGGCGTCGATATCGCCGCCATGTCACGTGAGGAGCTGCGCGCGCACATCGGCATGGTTCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCCGAGAACATCGCCTACGGAGCCCCCGCGGGCACCCCGATGGACAAGATCGTGGCGGCGGCCAGGGCCACCCACGTCGACCGCTTCGTGCGGACCCTGCCGGACGGCTACGACACGGTGCTCGACGACGAGGGCAGCAATGTCTCCGTCGGCGAGAAGCAGCTGATCACCATCGCCCGCGCGTTTCTCGCCGAGCCGGCGATCTTGGTCCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACCGAGGTACTCATCCAGCACGCGATGGCCCAGCTCCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTCTCCACGATTCGCGACGCGGACGTCATCCTCGTCATGGAAAACGGTGCGATCGTGGAGCAGGGGCCCCACGATGCGCTGTTGGCTGCCAACGGGGCGTATGCGCGGCTTTATGCCGCGCAGTTCGCGGAGCCCGTCTCGGAGACGGGCTGATCCCCCTCCCACGTTTTCGGCTTTCCCGCCGTGGTGGTTTCTCGCCGTTGCGCCTGCGGCGGGCGGGTGGGTGTCGGGTGCGGTGACGGGCCTCCGGGGCCTGGTGTGTGGACTGCTTCGCTTTACGTCCACACACCAGGCCCCTCCGGCCCGTCCCCTCCCGTGGGGGGAGTGAGTACAGGTGGGTGGGGGCGGGCGTCCGTAGGACGTGTCACTTCTGCTTCGCGAGGAGCAGTGGACCACCGGCGTGACCCCCACCAACCGTTTTTCCATCCCACCAACGGGAGGGGACGGGCCGGAGGGGGAGGGGTGTGGGACGTAAAGCGAAGCAGTCCCACACCCCTCCCCCGGAGGTCCGTCACCGCACCCCGACAGCCCCGCGCAGCGGACCCGGCCCGCCGCAGGCGCAACGGCGAGCAACAACCACGGCGCGAAAGCCAAAAACGTGGGAAGTCGTCCACATCGTGGGACACCGCCCACGAAAAAATGAGCGCCCTCCGCCGCGCCGGCGAACCCACCCGCGAGGCCTCGGCCGGCCCCCGGCCAAAGCGACCCCCGCCGCTTCAAATGGGGCCTCCCGGGGGTGCCACACACCCCCGGCCCGTCGCCCGGCGGCGGTCAACTGCGACCGCCGGCGACCACACGAAGTGATCGGCAGAACACAAAAAGCTTCAAAAGTGCCCTCCGCTCCGGAAGCCAGGTGAGCTATTCTGCTGGGCAAGAAGGATCCGGGCAGCGTAGCCCCCGGGTCCTTTCGTGCTTTCAGCCACGTGCCCGCGCAGCCACGGCGCGCGGCTGTGAGGACCGTACGAAGCAGTGCCGCAGACTCCCCCGGCCAGGGCCGGGAGCCCCGTCGCAGGGACCGAGGAGGAACCAGACGTCATGGGCGAGCGAAGCAGGCAGGACCGCACGCAACAGAGGACACAGCGCTCCGGGAACCGGGTAGGTGGTCGGAAGTGAGTTCGCTCCTGCTGCTGACCAACGCACTCCAGCCGTCGACGGAGGTGCTCCCGGCGCTCGGCCTGCTGCTGCACAGCGTGCGGGTGGCCCCCGCCGAGGGCCCGGCCCTGATCGACACGCCAGGGGCCGACGTCATACTGATCGACGGCCGTCGTGACCTGCCGCATGTGCGGTCCCTGTGCCAGCTGCTGCGGTCCACCGGGCCCGGCTGCCCGCTGGTGCTGGTGGTGACGGAGGGCGGGCTCGCCGCCGTCACCGCGGACTGGGGCGTCGACGACGTCCTGCTGGACACCGCGGGGCCCGCCGAGGTCGAGGCGCGGCTGCGGCTGGCGATGGGCCGCCAGCAGATCACGACCGACGACAGCCCGATGGAGATCCGTAACGGTGATCTCTCGGTGGACGAGGCGACCTACAGCGCGAAGCTGAAGGGGCGGGTCCTGGACCTGACCTTCAAGGAGTTCGAGCTGCTGAAGTATCTGGCGCAGCACCCCGGCCGGGTCTTCACCCGCGCCCAGCTCCTGCAGGAGGTGTGGGGCTATGACTACTTCGGCGGTACGCGGACGGTCGACGTCCACGTCCGGCGGCTGCGCGCCAAGCTCGGCCCCGAGCACGAGTCGCTGATCGGCACGGTCCGTAACGTCGGCTACCGCTTCGTGACGCCGGAGAAGGTGGAGCGGGCGGCGGAGGCCAAGGCCAAGGAGGACGCGGCGAAGGCGGCGAAGTCCGCGCCCGCCGCGGACCGTGCGCCCGGGGACGGTGACGGCTCCGGGAAGGCCGTCGCCGCGGGCGCGGACTCCCCGGCCCCACGACCTGCCCGCCGGTAGCACCACCCGCGTAGACTGCCGCGCGTGGCCAAGGTGACGCGGGATGATGTGGCAAGACTGGCGGGTACGTCCACCGCCGTTGTCAGCTACGTCATCAACAACGGACCAAGGCCGGTTGCCCCGGCCACGCGCGAGCGGGTGCTCGCCGCCATCAAGGAGCTCGGCTACCGGCCGGACCGCGTCGCGCAGGCGATGGCGTCCCGCCGTACCGATCTCATAGGCCTGATCGTGCCGGACACCCGGCAGCCGTTCTTCGCGGAGATGGCGCACGCCGTCGAACAGGCCGCCGCCGAGCGCGGAAAGATGGTGCTGGTCGGCAACGCCAACTACCTCGACGAGCGCGAGGTGCACTATCTGCGTGCCTTCCTCGGGATGCGGGTCTCCGGGCTGATTTTGATCAGTCAAGGGCCCAGTGAGCACGCCGCCGCGGAGATCGACGCGTGGGACGCCCGGGTGGTGCTGCTGCACCGGCGGCCGGATGCCATCGACGATGTCGCGGTGATGACGGACGACGTGTGGGGCGCGCAGCTGGCGACCCGGCATCTGCTGGAGCACGGCCATCCGTATGTCGCCTTCCTGGGCGGTACGGAGGAGACCCCGAAGTCCGGCGACCCGGTCACCGACCATGTCGAGGGCTGGCGGCGGGCCATGCTGGAGTCCGGGCGGTCGCCGGAGGGCTACTACTTCCAGTCCCCGTACAACCGCTATGACGCCTACCAGGTCGCACTGAAGCTGCTGGCCGGTCCGGAGCGGCCGCCGGCCATCATGTGCGCGACGGACGACCAGGCGATCGGTGTGCTGCGGGCCGCCCGCGAGCTGCGGATCGATGTGCCCGGTGAGCTGGCGGTCGCGGGCTTCGACGATGTGAAGGAAGCCGCGCTGACCGATCCGCCGCTGACCACGGTCGCCTCGGACCGTGAGGCGATGGCGCGGGCGGCGGTGGATCTGGTGCTGGACGACGGGCTGCGGGTGGTCGGCTCCCGGCGGGAGCGGCTGCGGCAGTTCCCGTCGCGGCTGGTGGTCCGGCGCTCCTGCGGCTGCGGCGGCTGAGAAGGCGCGCCGCCGGCCCGGTGGCTTTATGTCGGGCATACCCACTTCTGTCGGGTCTCTCAGGGTGTTCTCAGGCAGCTCTCATGGAGCGGTCGCAGAGTCATCTTCATGACCCAGAGCTACCGCCGAAGCGGCGATGAGATGCCACAGGACCGGCCGTACGCGTACGGCGACGACCACGGCCAGGGCTACGGCCACGAGGCGTACAGGGGGACCCCGGGCGCAGGCTTCAGTGAGCAGGCGGTCCCGCCGCCGCCCCCGTACGCACCCGAGCGGCGGCGCCGGGCCCGGCGGCCGGTCGCGCTGATCGCGGCGGTCGCGCTCGCCTCCGGTCTCATCGGGGGCGGCAGCGCGGTGCTGATCGCCGGCGCCACCCAGCCGTCGGCGCAGAACAGCTCCTCCACCCCGCTCGTCAACGCGGGCAAGACCAGCGGCAGCGGCGTCTCGGGGGTGGCCAAGGCGGTCAGCCCGGCGATCGTGGAGATCAAGGCACAGAGCGCCAAGGGGGAGTCCACCGGCTCCGGCGTGGTCGTCACCAGCGACGGCGAGATCGTCACCAACAACCATGTGCTCGCCGGTGCGGACACCGTCACCGTCACCTTCCACGACGGCAGCCGGAAGACGGCCGAGGTCGTCGGCACCGACCCCGGCAAGGACCTGGCGCTGGTCAAGGTGCGCGGCGCCAAGAACCTCACCGCGGCCTCGCTCGGCGACTCCAGCAAGATCACGGTCGGCGACCAGGTGGTGGCGATCGGCTCGCCCGAGGGTCTCACCGGGTCCGTGACCAGCGGAATCGTCTCCGCCCTCGACCGGGATGTCACCGTCCCCAAGGAGGAGGGACAGGGGCAGCAGGGCGGTCCGGGCGACCGCGGGGGCTGGCCGTTCGAGTTCGGCGGCAACCAGTACAACGGCGACACCGGCTCGTCGAAGACCTCGTACAAGGCCATACAGACCGACGCCTCGCTCAACCCCGGCAACTCCGGTGGCGCCCTGATCAATATGCAGGGGCAGATCATCGGCATCAACTCCGCGATGTACTCGCCGAGTTCGGAATCGAGCAGCAGCGCGGGCAGTGTCGGCCTCGGCTTCGCCATCCCGATCAACACCGTCAAGGACGACCTCGACGCGCTGCGCGGCGGCGGCAACAGCGGTGTCTGACCGGCCCCGCCCGCCGCACGAGAGGCTTGGCGTCATCCCTCTCAGATTCCCCGTGTTCGTGCAAGGGTGAAGTGCAACCCTTCGCAGCCATCCGAGGTCCGAGGTAACCACGCACATGAGCCCCGCCGAGCACGGTGACCATCCCGCCCGCATCCTGATCGTCGACGATGAGCCCGCGGTCCGTGAGGCCCTGCAGCGCTCGCTGGTCTTCGAGGGGTATGTGACCGAGCAGGCGGTGGACGGTCTGGACGCGGTCGAGAAGGTCGCGGTCTACGACCCGGAACTGATCGTGCTCGATGTCCTGATGCCCCGTATGGACGGGCTGACCGCCGCCCGCAGGCTGCGGGCGAGCGGGGTGACCGTGCCGATCCTGATGCTGACCGCGCGGGACACGGTCGGCGACCGGGTCACGGGGCTGGACGCCGGCGCCGACGACTATCTCGTCAAGCCCTTCGAGCTGGACGAGCTGCTCGCCCGGATCCGCGCCCTGCTGCGCCGCAGCTCGTACGCGGCGGCCGCCGGTGCCCCGCCCGTGGAGGGCGAAGTGCTGAGCTTCGCCGATCTGCGGATGGACCTGGCGACCCGTGAGGTGACCCGGGGCAGCAGGCAGGTCGAGCTGACCCGTACCGAATTCACGCTGCTGGAGATGTTCCTCGCCCATCCGCGGCAGGTGCTCACCCGCGAGCAGATCCTGAAGGCCGTATGGGGCTTCGACTTCGAGCCCACCTCCAACTCCCTCGATGTGTATGTGATGTATCTGCGCCGCAAGACGGAAGCGGGCGGCGAACCGCGGCTGGTGCACACCGTGCGGGGGGTCGGCTACGTCCTGCGGACGGACGGCGGGGCGGAATGA

Protein sequences of DBSCAN-SWA_2

>CP029541|5684205:5692799|5688910_5689738_+|AWN28853.1|DBSCAN-SWA
MSSLLLLTNALQPSTEVLPALGLLLHSVRVAPAEGPALIDTPGADVILIDGRRDLPHVRSLCQLLRSTGPGCPLVLVVTEGGLAAVTADWGVDDVLLDTAGPAEVEARLRLAMGRQQITTDDSPMEIRNGDLSVDEATYSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGPEHESLIGTVRNVGYRFVTPEKVERAAEAKAKEDAAKAAKSAPAADRAPGDGDGSGKAVAAGADSPAPRPARR
>CP029541|5684205:5692799|5690896_5691946_+|AWN28855.1|protease|DBSCAN-SWA
MTQSYRRSGDEMPQDRPYAYGDDHGQGYGHEAYRGTPGAGFSEQAVPPPPPYAPERRRRARRPVALIAAVALASGLIGGGSAVLIAGATQPSAQNSSSTPLVNAGKTSGSGVSGVAKAVSPAIVEIKAQSAKGESTGSGVVVTSDGEIVTNNHVLAGADTVTVTFHDGSRKTAEVVGTDPGKDLALVKVRGAKNLTAASLGDSSKITVGDQVVAIGSPEGLTGSVTSGIVSALDRDVTVPKEEGQGQQGGPGDRGGWPFEFGGNQYNGDTGSSKTSYKAIQTDASLNPGNSGGALINMQGQIIGINSAMYSPSSESSSSAGSVGLGFAIPINTVKDDLDALRGGGNSGV
>CP029541|5684205:5692799|5684205_5685939_+|AWN28851.1|DBSCAN-SWA
MLVRLARAHLRPHRRSISLIVLLQLIQTLATLYLPTLNADIIDNGVVKGDTGYILRVGGYMVAVTLLQIVCAIGAVYFGARSAMALGRDIRAAVFDRVQSFSAREVGAFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGVIMALNQDVPLSGLLLVIVPVLGILVSLIVRRMRPLFRGMQERIDTVNRVLREQITGIRVIRAFVRDRHERERFAGANTDLYDASLRAGRLMSMMFPLVMLIVNVSSVAVVWFGGLRIDSGSMEIGALTAFLSYLMYILMSIMMATFMVMMLPRAEVCAERIQEVLATDSSVTPPEHPVTELRRHGELELRGVEFRFPGAEQPVLRDISLTARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGTVLVDGEDVRTLDQETLAKAIGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALETAQARDFVERMEGGLEAPIAQGGGNVSGGQRQRLAIARALVRRPEIYLFDDSFSALDYATDAALRAALARETDRATVVIVAQRVSTIRGADRIVVLDEGRVVGTGTHAELMAGNETYREIVLSQLTEQEAA
>CP029541|5684205:5692799|5685935_5687954_+|AWN28852.1|DBSCAN-SWA
MTTADKGAAARAEAPAATEETPPMASRRGPAPAVGPGRMMGGQPTEKSMDFKGSGKRLLAQMRPERGIMSLALALGALSVALTVVGPKVLGHATDLIMSGIIGRQLPDGLTRAQAAEQLRAHGQDGLADMIGTMPVVPGHGIDFGAVGQVLLWVTLIYVAASLFGFVQARIATRVVQRAVFRMREQVEEKLARLPLSYFDKQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIVGVLAMMFWISPLLALVALITVPVSVVVATKVGKRAQPQFVQQWKTTGKLNAHIEEMYTGHSLVKVFGRQRESAELFREQNEALYAAGFKAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVASGALSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDATEQDPDPAQPARPERIEGRVEFEDVSFRYAPDNPLIEDLSLAVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAAMSREELRAHIGMVLQDTWLFGGTIAENIAYGAPAGTPMDKIVAAARATHVDRFVRTLPDGYDTVLDDEGSNVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRTEVLIQHAMAQLRTGRTSFVIAHRLSTIRDADVILVMENGAIVEQGPHDALLAANGAYARLYAAQFAEPVSETG
>CP029541|5684205:5692799|5692061_5692799_+|AWN28856.1|DBSCAN-SWA
MSPAEHGDHPARILIVDDEPAVREALQRSLVFEGYVTEQAVDGLDAVEKVAVYDPELIVLDVLMPRMDGLTAARRLRASGVTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSSYAAAAGAPPVEGEVLSFADLRMDLATREVTRGSRQVELTRTEFTLLEMFLAHPRQVLTREQILKAVWGFDFEPTSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVLRTDGGAE
>CP029541|5684205:5692799|5689762_5690788_+|AWN28854.1|DBSCAN-SWA
MAKVTRDDVARLAGTSTAVVSYVINNGPRPVAPATRERVLAAIKELGYRPDRVAQAMASRRTDLIGLIVPDTRQPFFAEMAHAVEQAAAERGKMVLVGNANYLDEREVHYLRAFLGMRVSGLILISQGPSEHAAAEIDAWDARVVLLHRRPDAIDDVAVMTDDVWGAQLATRHLLEHGHPYVAFLGGTEETPKSGDPVTDHVEGWRRAMLESGRSPEGYYFQSPYNRYDAYQVALKLLAGPERPPAIMCATDDQAIGVLRAARELRIDVPGELAVAGFDDVKEAALTDPPLTTVASDREAMARAAVDLVLDDGLRVVGSRRERLRQFPSRLVVRRSCGCGG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN28851.1|5684205_5685939_+	multidrug ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.7e-42	26.5
AWN28852.1|5685935_5687954_+	multidrug ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.4e-53	29.5
AWN28853.1|5688910_5689738_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-17	38.8
AWN28854.1|5689762_5690788_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.3e-24	28.8
AWN28855.1|5690896_5691946_+|protease	serine protease	W5SAB9	Pithovirus	1.8e-05	30.1
AWN28856.1|5692061_5692799_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.5e-35	36.6