CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029544	Lactobacillus helsingborgensis strain ESL0183 chromosome, complete genome	3 crisprs	cas1,cas2,csn2,DEDDh,DinG,cas3,csa3	0	14	3	0
CP029545	Lactobacillus helsingborgensis strain ESL0183 plasmid unnamed	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029544_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029544_1

59655-59738

Orphan

Consensus_repeat	Method
TATTGTTTAAAAATAAGACGATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029544_1

>merge|CP029544|1|59655-59738|CRISPRCasFinder
TATTGTTTAAAAATAAGACGATAAATATTCATTTACGAGTGATTTCTTTTTATCCAGTAAATAATGTTTAAAAATAAGACGATA

>CP029544|1|1|59655-59738|CRISPRCasFinder
TATTGTTTAAAAATAAGACGATA	AATATTCATTTACGAGTGATTTCTTTTTATCCAGTAAA
TAATGTTTAAAAATAAGACGATA

Protein	Signature genes	Signature genes Name	Protein_function
CP029544.1\|AWN32707.1\|68862_69555_+\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|234784
CP029544.1\|AWN32700.1\|58809_59286_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377217
CP029544.1\|AWN32699.1\|56747_58727_+\|PTS-beta-glucoside-transporter-subunit-IIABC	unknown	unknown	gnl\|CDD\|273919
CP029544.1\|AWN32693.1\|50260_50548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378279
CP029544.1\|AWN32708.1\|69658_70399_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
CP029544.1\|AWN34259.1\|61140_62925_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377668
CP029544.1\|AWN32704.1\|64268_65414_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|372469
CP029544.1\|AWN32705.1\|65421_66576_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341481
CP029544.1\|AWN32697.1\|54158_55811_-\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
CP029544.1\|AWN32702.1\|59796_61110_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238535
CP029544.1\|AWN32701.1\|59312_59585_-\|hypothetical-protein	unknown	unknown	unknown
CP029544.1\|AWN32695.1\|52415_53177_+\|hypothetical-protein	unknown	unknown	unknown
CP029544.1\|AWN34260.1\|67548_68550_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|179641
CP029544.1\|AWN32709.1\|70409_70823_+\|PTS-mannose/fructose/sorbose-family-IIA-subunit	unknown	unknown	gnl\|CDD\|225446
CP029544.1\|AWN32692.1\|48681_50280_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP029544.1\|AWN32703.1\|63018_64290_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377757
CP029544.1\|AWN32698.1\|55807_56539_-\|trehalose-operon-repressor	unknown	unknown	gnl\|CDD\|274116
CP029544.1\|AWN32694.1\|50994_51636_+\|hypothetical-protein	unknown	unknown	unknown
CP029544.1\|AWN32706.1\|66598_67501_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|188630
CP029544.1\|AWN32696.1\|53192_53885_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224054

Protein	Function_ID	Function_description	E-value
CP029544.1\|AWN32707.1\|68862_69555_+\|deoxyribose-phosphate-aldolase	gnl\|CDD\|234784	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.	1.77373e-88
CP029544.1\|AWN32700.1\|58809_59286_-\|hypothetical-protein	gnl\|CDD\|377217	pfam04074, DUF386, Domain of unknown function (DUF386). This family consists of conserved hypothetical proteins, typically about 150 amino acids in length, with no known function.	3.92538e-31
CP029544.1\|AWN32699.1\|56747_58727_+\|PTS-beta-glucoside-transporter-subunit-IIABC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	1.98755e-134
CP029544.1\|AWN32693.1\|50260_50548_+\|hypothetical-protein	gnl\|CDD\|378279	pfam09860, DUF2087, Uncharacterized protein conserved in bacteria (DUF2087). This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function. Structural modelling suggests this domain may bind nucleic acids.	5.49304e-26
CP029544.1\|AWN32708.1\|69658_70399_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	5.42566e-68
CP029544.1\|AWN34259.1\|61140_62925_-\|hypothetical-protein	gnl\|CDD\|377668	pfam06506, PrpR_N, Propionate catabolism activator. This domain is found at the N-terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.	3.20997e-24
CP029544.1\|AWN32704.1\|64268_65414_+\|glycosyl-hydrolase	gnl\|CDD\|372469	pfam13088, BNR_2, BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases.	1.6822e-54
CP029544.1\|AWN32705.1\|65421_66576_+\|alcohol-dehydrogenase	gnl\|CDD\|341481	cd08551, Fe-ADH, iron-containing alcohol dehydrogenases (Fe-ADH)-like. This family contains large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases, insect-type, or short-chain alcohol dehydrogenases, iron-containing alcohol dehydrogenases, among others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.	4.64372e-146
CP029544.1\|AWN32702.1\|59796_61110_+\|hypothetical-protein	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	4.20212e-21
CP029544.1\|AWN34260.1\|67548_68550_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|179641	PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA.	1.89968e-137
CP029544.1\|AWN32709.1\|70409_70823_+\|PTS-mannose/fructose/sorbose-family-IIA-subunit	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	3.42316e-26
CP029544.1\|AWN32692.1\|48681_50280_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.21437e-67
CP029544.1\|AWN32703.1\|63018_64290_+\|hypothetical-protein	gnl\|CDD\|377757	pfam07005, DUF1537, Putative sugar-binding N-terminal domain. This conserved region is found in proteins of unknown function in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. Structural analysis of the whole protein indicates the N- and C-termini interacting to produce an interacting surface into which a threonate-ADPcomplex is bound, suggesting that a sugar binding site is on the N-terminal domain here, and a nucleotide binding site is in the C-terminal domain (manuscript in preparation). There is a critical motif, DDXTG, at approximately residues 22-25.	1.00599e-44
CP029544.1\|AWN32698.1\|55807_56539_-\|trehalose-operon-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	2.31555e-92
CP029544.1\|AWN32697.1\|54158_55811_-\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
CP029544.1\|AWN32706.1\|66598_67501_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	5.52329e-109
CP029544.1\|AWN32696.1\|53192_53885_+\|hypothetical-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	1.60856e-27

>CP029544.1|AWN32701.1|59312_59585_-|hypothetical-protein
MTVNENTQIDPEKFAYHFATVARQMNYSQQDLIPEAKKFLLSYLTAYYLIGDFNTLEDTQFTTNKKLSNLSFDEMVDKIQQLNSKQMLNN
>CP029544.1|AWN32700.1|58809_59286_-|hypothetical-protein
MIYANINDSTTTFIRQNQYLDKAFKWLQETDLTNLAVGRYDISDGIFVKIQEYNTKDEKKGRFENHQTHLDFHYLIKGAEITRVTKPNGLTEIDNALASPDDVAHYQRFTGPATSICLHPGDYIILFPEDAHEACLDLDVNEKPCKKAVIKVPIKLVQ
>CP029544.1|AWN32699.1|56747_58727_+|PTS-beta-glucoside-transporter-subunit-IIABC
MSNTIKILAPVAGQVINLEDVNDPVFSQKKLGEGFAVKPSAGEIVSPVTGKVVMVAKTKHALGLQTADDVEVMIHLGIDTVELDGKPFDLQVAAGSKVKAGQQLGTMDLQAIKDAQKDDTVILAITNTADILAGIDLALGTKSAGESAATITLKQTKSAPVAANKKENKYQTTAREIVKAVGGADNVKSVMHCFTRLRFTLNDNSIPQDDEVNNIKGVIDVTRANNQYQIVIGQTVEDVYDELIKLLGPKYAGQGETTAAAPAPEANQSIGGKIKNGFFQLIGVITGSMMPVIGLLAASGMLKGILNILTNFCHMSTASPTYTIINAMGDASFYFLPLIVGFTAAQRLGSNPVVVSIIGGFLIYPDLVKIYASGKFSYYLAGVGINANFFGIPIHIPQYTYSIFPMIFAAWMAAKIEPWIKKWMPVTLRQIFTPLVEIFLVGMTVLIIVGPVISFISTGIAKVLQWLLTVNTALSGLIIGGLYQILVIFGLHWAVVPIIANDIAATGHSILNGIVSVTMIAQGAGALAVWFKTKHNPDLKGLSLSAAISAAVGITEPAMYGVNLKYGRVFMTSSLGAAIGGLVNGLLKVDMYGFTGSLIGFPSFVPKAGQGNPNNLLNFWIASIVTIVAAFALTYFFGYKEQDANSPKDAPKKKNLADL
>CP029544.1|AWN32698.1|55807_56539_-|trehalose-operon-repressor
MAVKYIQIAADLANKIKHEQYAAGDFLPSEPTLSQLYNVSRETIRKALTELADAGLIQKIQGKGSVVINAARIAFPVSNIESFDELNKQKQMHAATKIIELKDARVPFTISKHLSLTETAATYVKRLRLINHEPIVVDEDYILKKYVPQISPQQAQSSLYHYFEHDLGLEIDYATKTITVEPASASVIKQLQLTNTNLVVVVRSLTYLKDTSFFQYTISQHRPDKFKFVDFAHRKNKNGGLIL
>CP029544.1|AWN32697.1|54158_55811_-|alpha,alpha-phosphotrehalase
MSLADKVIYQIYPKSFYDSNGDGTGDLRGIIQKIPYLKKLNIDMIWFNPFFVSPQNDNGYDIADYYGIDPLFGTMADFEELVAKLAQNHIGVMLDMVLNHCSTDHIWFKKALAGDEYYQKFFYIRKPKADGSLPNNWTSKFGGSAWAPFGKTGKYYLHLYDKTQADLDWHNPAVRTELFKVVNFWRDKGVKGFRFDVINVIGKDEQLTDAPKNTASKLMYTDQPVVHQYLKELNQKTFGQEPDTITVGEMSSTTIANSVAYTKKENHELSMVFTFHHLKVDYQDGQKWTKMTFDFSALKKALNDWQVGMSQGGGWNALFWNNHDQPWALSRFGDPVHYREKSAEMLATVMHLLRGTPYIYQGEEIGMINPNYQKITDYVDVETLNAYDDLKKQGLSDAKALTIIQAKSRDNSRTPMHWDDSVNAGFTTGTPWLKPKDQEQINVAAELDHGEVFPYYQKLIYLRKHYPIIAKGSYEPIDLDHPQIFAYCRLYQGQTLLVINNFYGQKVTYDLPGSYQGQKAQTLISNYNRNLSAVPKTLALQPYESLALLI
>CP029544.1|AWN32696.1|53192_53885_+|hypothetical-protein
MEIKHLNFSYKKKEIFADFNAKFIGDQLNVIIGSNGAGKTTLLNLIYGFIDRPAAAMIDFPSMSNIIYKFQNMSFFDELTVKQVINFFKSMNDHTVAVTNAQVSFYNEIIKELINTKLRSLSGGEYQSVMVYCTSIMERELYLFDEPLSGIDSYIENLILDLVESLVVEKKKKVIMTLHQLAKLNSLQAHIVFVGNKKCVFQGNLSQMLQAADTDDIDIAFKRMRQAVSC
>CP029544.1|AWN32695.1|52415_53177_+|hypothetical-protein
MKKKFYALYKIFLINAFSNKIALMFNIVFPVIYFAISNAPVLINNYTVSKDKLISASAYYFAYIALTTTLNSVILAMVEYRDYGYYKVIYMVTNSKYLVLISQFLSQWTFLIIELFLFNLITTLMFKSLAYLGYLLLTTIIAAIVFVLPLTMGLYFLLTVKLRLQTYNIVITLIILLSFMVSAFEAKNEILNLLLLCTPVKYLMTGYEVIMQMMFSRVNWANLINLLLVILIYVLFGMIFIAKQNISTIFEKK
>CP029544.1|AWN32694.1|50994_51636_+|hypothetical-protein
MKRSLSIAAILAVFGASLIFSATSSNYVPVKAADVSDTNTIVNNQGVSDKTWSKKLAKAGYVFKLTKDEVSADGGLFQRKNGLSKEYSVKYAKKIFAKNMLFKIDRAISIKNGSLVHIVSQNGKYKFWTNFLTGTYNVNGLRKALKPLIKAEAEVIHTTSKEKKTKMLVTAEKLANKLKGSDKKLAQESITQLKQWIDNEVYANIPTLLIGNF
>CP029544.1|AWN32693.1|50260_50548_+|hypothetical-protein
MKKMENKELLMRYIDADGVVKVWPGKAKNRLLILKYLATKFEPTKKYSEQEVNLILMHFVSDYVTRRRDLIENHFLNRTDDGRVYWLNEENRVKD
>CP029544.1|AWN32692.1|48681_50280_+|ABC-transporter-ATP-binding-protein
MQSSLKFASKWKLGAYTLLAMISAFGNVVIAYVTKIMLNSAQYRQGNSTNLIKIAGIGAATILIIMLSNFVYRYIKCAIIQDVNVYLKEKTMSYLIEQRSDSQKDGLSLMTNDLKQIETSKTTNELMIIAELASFVLSVVVGLINSWILTLIFMVTTLIPGLVQRAFTKTIQAKAKVWETNNVAYTQSVNDGLNGAQTVGLYDAQSSTIVKVVNSAKRMEEALKNLNFTQAAAGEVIMAFADIFSFILPFLVGAILMLQGQIGVGTLIMIVQLSNEFINPIVNIFEQLNAIKSTKPMWDKVEQALSFSTSKVKSTKVGQFTGLKVEDASYSQGGKAIFTHLNLTVAPNEKILLMAPSGWGKTTLLNLMLGKIKPNTGHVFIDDEDVTGNWSAAHDNFSYVNQKPFIFDDTIKFNILLGRKVSPESLAEAVESAGLTELVNEKGWDYQVGEKGANLSGGQIQRIEIARAFLSERPVLLADEATSALDPELSLAIHKTLLKKPNLAVIEVAHKISATEKSLFDRIINLNEKNGE
>CP029544.1|AWN32702.1|59796_61110_+|hypothetical-protein
MFYLREVIKMSQAYIVLIVMAVMIVAMVSDKFDFGFAPVAACTILVLTGTATVQQAYGGFINNNTILTAGYVIISSLFARTRAIHKLQAFLLKIQKGKSGLTLFVVLLLFTVILMTVMEPGPATLLICLVLSTLPAGGGIPSGQMLLPLASMVDISARKIPMGMTMVYVLALNNFITNAGFSHTVSMGTWIIAGAVPLLVAFVYSLIAYRVLPKKELKIDAGQDQKEQEEEATDNLKSWQENLIYISFVVTTIAMFFTNQLGNIVYVIPLVGIGLMYFCNIISFKEIREGMSSPIIYLLGGMFGLADIMAAKGVTKMIGSALQGVLGNNSSIWVITFVFAFAATIMANLTGSNMGTTMILTPIAIAVAVASGLDPRAAGLATVIASNAAVIMPMDTAIGIAVAQGHYKIGRTFVYTIPLTIIYITVVAVMCCVLFPA
>CP029544.1|AWN34259.1|61140_62925_-|hypothetical-protein
MKYTNSKNMFKIETEVIMTAKILCIVPYPGLRNKVQHFFKQLTTENADLDIQIQIELANLANKNNLAALVKNNDFDLLLSRGGTVAFLEKQTNVPVIDIGISQYDIIRTIKSIPDLSKSAIICYDAFDQAISQTLAQFNIKMTKYVVQKKMDIKNAMAKLAASGYHNIICDSGIIVASNNIYHLNSYLIESGDEVVYQALKTCFLLLREKETNINYFNLLSETLAAFHNYTLFFEKDNYFNVLFSTNKKKAAFLAKKVRKALSDATPIVTWANSSWHVVVTQTPNFSIATLDYLGKAASSSQTHFDADYISSVYSTCYDNQFFKLLRHYSHLQAPVAIIGADGLEKEYLGSLIFKETDAATPIQISLSDHESLSKALADNDSIFFDNHHLIQITGLEKLPASDQNDFFEFIRKSNLDGRNKLVFLITQPYGTKLNISFPDYLTVNELFLKPLNAMSYDVFNQLVHSILNDFNLKTGKTFSGISDTALDHLSSYPWPHNYREFIHVLTTALAVADAPILKGKDIDLILTQLAVSEKSQPEQAALKVASPAHRGHSLHDIIVQDIKQALKENNGNKTKTAKELNISRATLWRYLKR
>CP029544.1|AWN32703.1|63018_64290_+|hypothetical-protein
MAGGKMAKFLIIADDFTGANDTGVKLTEEGMPVNVFFSAINIVPHTSCVIDTETRNDSEKTAYEKTKTILNSIDMNQFDFVYKKVDSTLRGNIVTELRAINDRFTPDYVVFAPALPALGRQVINKKVLVSGKELRKTEFACDPVKPVLLDNVETILAQSFGVNSVQYYSLKDLRSNKDLDLSKKCFGFDTENDEDFCKIVSLFQGLKGKILWVGSSGLIEGMVKKSSVATPAIALVGSVSSKTRKQILYAKENGLAIIALPIYEIYKTENYSEYVDQAVSILKKGRNLALVSSASLKRADLIKTKTSFNEAGIVGTEMENTIQMILAGICRRVIKEFPVSGLFVTGGTTAQSILRIVKAQGTVIREEVALGMPLLTVVGGEFDGINMISKAGAFGDSSLIMFGLNKLRSLGKKAEISWNYKKA
>CP029544.1|AWN32704.1|64268_65414_+|glycosyl-hydrolase
MELQESLTAKFDRTMLLPDSGIQSHASNLLILPNGDTLCTWFSGTEEGTDDITIFMAELKAGTDSWSKPVPMSNNPGRSDQNPVLFAAPDGDIWLLYTSQVGGNEDTAIIQYRVSHDNGKTWSLQSNLFPGESGLFIRHPLVVTANGEWLLPLYHCVVKNDGKPWDGSYDYSCVRVSQDSGQTWKEYEVPDSQGCVQMSIVKLQNNAGYVGFFRSRWADNIYRSFSNDGSRWTPPKAIDLPNNNSSIQAALLPDGNIILAFNKSSAEDATVRRLSLFSEKTTAKETSNKKAAKTAFWGAPRAPLTVAISEDNGKTWPYVRNIAEGSGYALTNNSKDKKNREFSYPSVKPTRNGKIALTFTYFRQNIAFVEFTEDWVKEEKE
>CP029544.1|AWN32705.1|65421_66576_+|alcohol-dehydrogenase
MKEAFLKLPQRVYLGENLLDKLGEFLQTRKNTNVLLFTDQGLLKAGLVQPLEDCLQAHGIAYQIESEIKPEPSYTQVDALFKKVSQFNFNTIVAIGGGSVMDAAKLISLLLHTDLSVKDLINDPTKAQKHCATVFIPTTAGTGSEATINAIVSIPEKQVKFGIVADAMLPDLVLLDGNNVKNLPKSILASSAIDALSHCVECYTAKNATVMSDGVALLGAKLIFKNIIKAYQDTKDIQAREALQLGAFYGGVAITASGTNIVHALSYPLGGKFHIAHGVANAILFKACMETNKPAIEDRLAALCTNIWPEEGSKSTSAKADFVIAKIAEIVAKTEIPTDLKKFGVQETDLDFLVDSALEQKRLLSHNLKKLTRSEIAQIYKAVM
>CP029544.1|AWN32706.1|66598_67501_+|4-hydroxy-tetrahydrodipicolinate-synthase
MCQTKIAQGIIAAMVTPMDENGQINYAELKNQVERQINAGISGVFTLGTNGEGYILSHDEKLKVMETVIKQANHRVPVYVGTGCVSTAETIQLSQQAEELGADALSVITPWFAQASQEDLFKHYQALNDAVHIPILLYNIPARTGNALAPKTVARLADLPHIAGIKDSSGNFDNILQYIELTRNKDFAVISGNDSLILWTLKAGGTGGIAACANVLPEIMVSIYRYYQAGKWEEARKAQDSIRPFRNCFKLGNPNTIVKKATNVMGYPVGMPRAPFNGLTKEAVTTIQNTIDEYYSEYKK
>CP029544.1|AWN34260.1|67548_68550_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MGDPASIGPEISLKTFQDQRLYEKCRPLLIGDSNVLEKVMEILPDRKLQLNPITNVKDAKFQYGTMDVYDMHEVEISELQFGQVSKMAGNAAFQYVKKVIELANAHEVDATVTNALNKEAMNLAGHHYAGHTEIYGKFTHTPNYTMMLAHGNLRVVHVSTHVSLRKACDLVKKPRVAECIKLADEVCRNLGIKNPRVAVAGLNPHAGENGLFGDEEIKEIAPAVAEMRAKGVNVTGPVPADTVFAKCNGGMYDIVVAMYHDQGHIPVKVIGFQYDEQKKKWDSVAGINVTLGLPIIRTSVDHGTAFDQVLKGTANEVSLKNAIDYAVKLAESK
>CP029544.1|AWN32707.1|68862_69555_+|deoxyribose-phosphate-aldolase
MLNLSDKELASKIQHTNVNPELTPDDIRGLCDDCKHFGFNGVMIQPQWVTLAKEELKGTNIQVATCMSFPMGAQKTEVKVFEAQRCFADGADQLDWMPNVGFLKAGMYDEYQNEIAAVVKAAGGKVVKIMLEFGMLTREEKIKAAELARDAGATYLKNSSGWGKGGHATIDDIQLLKRIAQDKCEVKASGGIRTRQQALSLLEAGASLLGTSAGPQIITGIKGNDDSIAD
>CP029544.1|AWN32708.1|69658_70399_+|GntR-family-transcriptional-regulator
MSNISIDNNSPISIYQQIANQIKTDINKKILTPGDKIPSEKWFVDNLGVARGTVRKAISLLVKEGTLEKVQGKGTFVTKPQISYPFAQELVSYAETMKAKNINFSTQVIEKKIVEPTKEIQKKLKIDKEQKVLYLVRLRSVEDTPAILTFNWISLDKCPEIAKVDFNNVALFAAIEKDAGIKIKYGIRNFSARNLNKKQAKIMELAPNDAALELNQVTFAANDEPIECSDALLRTDQYKVTSILYR
>CP029544.1|AWN32709.1|70409_70823_+|PTS-mannose/fructose/sorbose-family-IIA-subunit
MKILITTHGNMAKGIYSSYQMLAGSNNQIKYLGLSPDDTGQFKKELAHIIDQETDDLLILCDIKGGSPYNECFAKYLQNPQKIRVVAGLNLPMLLEVGLSLTSKPSLDEITDLAEKFGKEGVCVAKETADTNQNIEF

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Crispr_ID: CP029544_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029544_2

358144-358773

TypeII

Consensus_repeat	Method
GTTTTAGATGGTTGTTAAATTGATGAT	PILER-CR
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CRISPRCasFinder
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CRT

9 spacers

csn2,cas2,cas1,cas9,DEDDh

The CRISPR arrays of CP029544_2

>merge|CP029544|2|358144-358773|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGATAGTTGTTAAATTGATGATGATTAGAACATGGCAACATTGTTAATAATCCGGAAGCAGGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACTTTACCACTTTAGCTTCCGTAATCGCATTAGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACTGATTTGGAAAAAGCAGATGTCTGGTTTATGTTTTAGATGGTTGTTAAATTGATGATAATTAGAACTCTTCAAATGGCTCTTTGGCATCAACTACTGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACGAGTAACTATAATCATCGTCATTATCGTTAGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACCCTCGCCACACATTAGCGCCCCAGCGATTGGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACCTTTAGAAAATGGCGAAATTGTCTTTACGAGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACCCCCGTCGCTCGCCGCTAGGCAGGTCAAACGTTTTAGATGGTTGTTAAATTGATGATGAATAGAACGCCAACGGCTGCGCCCAAAGGGCCGCCAAAGTTTTAGATAGTTGTTAGATCAATACTCCTTTAATA

>CP029544|2|1|358144-358698|PILER-CR
GTTTTAGATAGTTGTTAAATTGATGAT	GATTAGAACATGGCAACATTGTTAATAATCCGGAAGCAG
GTTTTAGATGGTTGTTAAATTGATGAT	GATTAGAACTTTACCACTTTAGCTTCCGTAATCGCATTA
GTTTTAGATGGTTGTTAAATTGATGAT	GATTAGAACTGATTTGGAAAAAGCAGATGTCTGGTTTAT
GTTTTAGATGGTTGTTAAATTGATGAT	AATTAGAACTCTTCAAATGGCTCTTTGGCATCAACTACT
GTTTTAGATGGTTGTTAAATTGATGAT	GATTAGAACGAGTAACTATAATCATCGTCATTATCGTTA
GTTTTAGATGGTTGTTAAATTGATGAT	GATTAGAACCCTCGCCACACATTAGCGCCCCAGCGATTG
GTTTTAGATGGTTGTTAAATTGATGAT	GATTAGAACCTTTAGAAAATGGCGAAATTGTCTTTACGA
GTTTTAGATGGTTGTTAAATTGATGAT	GATTAGAACCCCCGTCGCTCGCCGCTAGGCAGGTCAAAC
GTTTTAGATGGTTGTTAAATTGATGAT

>CP029544|2|2|358144-358707|CRISPRCasFinder
GTTTTAGATAGTTGTTAAATTGATGATGATTAGAAC	ATGGCAACATTGTTAATAATCCGGAAGCAG
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	TTTACCACTTTAGCTTCCGTAATCGCATTA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	TGATTTGGAAAAAGCAGATGTCTGGTTTAT
GTTTTAGATGGTTGTTAAATTGATGATAATTAGAAC	TCTTCAAATGGCTCTTTGGCATCAACTACT
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GAGTAACTATAATCATCGTCATTATCGTTA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CCTCGCCACACATTAGCGCCCCAGCGATTG
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CTTTAGAAAATGGCGAAATTGTCTTTACGA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CCCCGTCGCTCGCCGCTAGGCAGGTCAAAC
GTTTTAGATGGTTGTTAAATTGATGATGAATAGAAC

>CP029544|2|1|358144-358773|CRT
GTTTTAGATAGTTGTTAAATTGATGATGATTAGAAC	ATGGCAACATTGTTAATAATCCGGAAGCAG
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	TTTACCACTTTAGCTTCCGTAATCGCATTA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	TGATTTGGAAAAAGCAGATGTCTGGTTTAT
GTTTTAGATGGTTGTTAAATTGATGATAATTAGAAC	TCTTCAAATGGCTCTTTGGCATCAACTACT
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GAGTAACTATAATCATCGTCATTATCGTTA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CCTCGCCACACATTAGCGCCCCAGCGATTG
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CTTTAGAAAATGGCGAAATTGTCTTTACGA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CCCCGTCGCTCGCCGCTAGGCAGGTCAAAC
GTTTTAGATGGTTGTTAAATTGATGATGAATAGAAC	GCCAACGGCTGCGCCCAAAGGGCCGCCAAA
GTTTTAGATAGTTGTTAGATCAATACTCCTTTAATA

Protein	Signature genes	Signature genes Name	Protein_function
CP029544.1\|AWN32969.1\|363159_363903_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|379283
CP029544.1\|AWN32962.1\|351809_356012_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
CP029544.1\|AWN32965.1\|357453_358122_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
CP029544.1\|AWN32970.1\|364121_364571_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378693
CP029544.1\|AWN32959.1\|348178_349444_+\|RNA-polymerase-sigma-54-factor	unknown	unknown	gnl\|CDD\|274109
CP029544.1\|AWN32958.1\|347452_348157_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
CP029544.1\|AWN32968.1\|362083_362998_-\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|188121
CP029544.1\|AWN32961.1\|350733_351642_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
CP029544.1\|AWN32973.1\|366064_367018_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
CP029544.1\|AWN32963.1\|356262_357174_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP029544.1\|AWN32964.1\|357151_357457_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP029544.1\|AWN32956.1\|345788_346628_+\|PTS-mannose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|377077
CP029544.1\|AWN32975.1\|368355_369441_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
CP029544.1\|AWN32957.1\|346624_347452_+\|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID	unknown	unknown	gnl\|CDD\|377079
CP029544.1\|AWN32972.1\|365232_366054_+\|Sir2-family-NAD-dependent-protein-deacetylase	unknown	unknown	unknown
CP029544.1\|AWN32974.1\|367158_368034_+\|DNA-nuclease	unknown	unknown	gnl\|CDD\|372824
CP029544.1\|AWN32967.1\|360391_361639_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133058
CP029544.1\|AWN32971.1\|364583_365219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225205
CP029544.1\|AWN32960.1\|349599_350541_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381318
CP029544.1\|AWN32966.1\|358808_360062_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863

Protein	Function_ID	Function_description	E-value
CP029544.1\|AWN32969.1\|363159_363903_+\|oxidoreductase	gnl\|CDD\|379283	pfam13596, PAS_10, PAS domain.	1.85915e-30
CP029544.1\|AWN32962.1\|351809_356012_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	8.06651e-117
CP029544.1\|AWN32965.1\|357453_358122_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	7.62295e-65
CP029544.1\|AWN32970.1\|364121_364571_+\|hypothetical-protein	gnl\|CDD\|378693	pfam11694, DUF3290, Protein of unknown function (DUF3290). This family of proteins with unknown function appears to be restricted to Firmicutes.	5.64318e-53
CP029544.1\|AWN32959.1\|348178_349444_+\|RNA-polymerase-sigma-54-factor	gnl\|CDD\|274109	TIGR02395, RNA_polymerase_sigma-54_factor, RNA polymerase sigma-54 factor. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called sigma-54, or RpoN (unrelated to sigma 70-type factors such as RpoD/SigA). RpoN is responsible for enhancer-dependent transcription, and its presence characteristically is associated with varied panels of activators, most of which are enhancer-binding proteins (but see Brahmachary, et al., ). RpoN may be responsible for transcription of nitrogen fixation genes, flagellins, pilins, etc., and synonyms for the gene symbol rpoN, such as ntrA, reflect these observations [Transcription, Transcription factors].	2.08371e-81
CP029544.1\|AWN32958.1\|347452_348157_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	6.69037e-41
CP029544.1\|AWN32968.1\|362083_362998_-\|prolyl-aminopeptidase	gnl\|CDD\|188121	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase.	1.59462e-154
CP029544.1\|AWN32961.1\|350733_351642_+\|L-lactate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	4.04262e-141
CP029544.1\|AWN32963.1\|356262_357174_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	6.64517e-102
CP029544.1\|AWN32964.1\|357151_357457_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	8.79065e-26
CP029544.1\|AWN32956.1\|345788_346628_+\|PTS-mannose-transporter-subunit-IIC	gnl\|CDD\|377077	pfam03609, EII-Sor, PTS system sorbose-specific iic component.	2.66362e-70
CP029544.1\|AWN32975.1\|368355_369441_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	9.39142e-122
CP029544.1\|AWN32957.1\|346624_347452_+\|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID	gnl\|CDD\|377079	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component.	1.38923e-105
CP029544.1\|AWN32973.1\|366064_367018_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	3.87665e-42
CP029544.1\|AWN32974.1\|367158_368034_+\|DNA-nuclease	gnl\|CDD\|372824	pfam13930, Endonuclea_NS_2, DNA/RNA non-specific endonuclease.	3.46669e-13
CP029544.1\|AWN32967.1\|360391_361639_-\|hypothetical-protein	gnl\|CDD\|133058	cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.	1.02429e-33
CP029544.1\|AWN32971.1\|364583_365219_+\|hypothetical-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	6.3397e-61
CP029544.1\|AWN32960.1\|349599_350541_-\|aldo/keto-reductase	gnl\|CDD\|381318	cd19092, AKR_BsYcsN_EcYdhF-like, Bacillus subtilis YcsN, Escherichia coli YdhF and similar proteins. Bacillus subtilis YcsN and Escherichia coli YdhF are prototypes of this family. They are uncharacterized aldo/keto reductase family oxidoreductases.	9.12636e-128
CP029544.1\|AWN32966.1\|358808_360062_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.04604e-42

>CP029544.1|AWN32965.1|357453_358122_+|type-II-A-CRISPR-associated-protein-Csn2
MILTYATHKKWVLKKFGVKIIATGSPIAYRDLIQGFQGQNQLLLCSDDNYNALNISETFDFIGDPLLSGDITKKYMTHIVSSYITNLDEENRNKIIKSFYNLETTLHDTLLLEDLPLEITFDEDLKKLLKLTDVHLDKTILNSPYGIIETVLRIHQVCNLRTIPVICNVAHYIEEREWQELASLVTQMKLIVILIEFTDAKNLQIPKDIPFYYIDKDLVDWY
>CP029544.1|AWN32964.1|357151_357457_+|CRISPR-associated-endonuclease-Cas2
MRLMIMFDLPTETAEERKEYRQFHKKLINEGFLMVQFSVYVRVCVTRQTAKFLENRIRKFLPRGGLVQSLMVTEKQYNDMHFLVGKPIDDVRNTSDRTIIL
>CP029544.1|AWN32963.1|356262_357174_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSVIITQHAKLTYSMQMMIVQTRDGINQIPIEDINLLLVSTTQAVITSALISKLAQNQTKIIFVDEKDNPVVETAVYYPGARNIAKLKEQFNWDEHLKELLWTKIVSQKIKNQIVVLENYHLAKDDVQNELDQLEINDESNREAIAARKYFMLLFDKNFVRRDTSAVNAALDYSYAILLSSFNREIVMNGYLTYFGIHHCSQENQFNLASDLMEPFRPFVDYWVKAHERIKELTPDIKYGLVELLSLEIKFNGKSTLLTNAITVYTRECLKFLSGDRKELPEMEMSLTNEVPNNALNDNV
>CP029544.1|AWN32962.1|351809_356012_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKAITEDYILGLDIGTNSCGWAVMDKKNRLLRLRGKRAIGSHLFEEGHSAADRRGFRTTRRRLKRRKWRLRLLEEIFAEPMAEVDPGFFVRLHQSWVSPLDKSRKKYQAIVFPTAKADHDFYEKYPTIYHLRDALMREDRQFDLREIFLAIHHIVKYRGNFLQDTPVNSFVASKIDVATFLTNVNQAYADKYGEEQNFIELNENNAAAIEAVIRGKDKDKTTKQLDKAKKIAKLLQSSTNKYEKNVTRQIANAIIGYKTQFETILGKDIDKNDKADWEFKLSDGDADDKLENLLPEFDDNDQYIVAEIKKLFGSIALSQIVYENMTLSQSMKCKYKDHGDDYHLLKQYIATLSDHGQVRKLLLAYDLYVNNRHGRLLEAKKEFKQDKALTQDEFYKIVKENLDDSQLAQKILQKIEEEKFMPKQRVNKNGFIPYQLHQIELDQIIANQSKYYPFLAEENPVKEHRKQAPYKLDELVRFRVPYYVGPLISPDGKRKDGQQNKSQEMFKFAWMKRKDNNGAITPWNFAQKVDRETSANRFIKRMTVKDTYLIGEDVLPARSLLYQKFEVLNELNNIRVNGKRLEPKFKQKVFNELFKQKNKVTKKAFKEFILQNTRMKTAEIDGLADPTKFNSSLSSYYHLKSTKVFDKQLDDPQYQADFEKIIEYSSIFEDAEIYQEKLHKEIKWLTHAQFKAIANWRLQGWGRLSRKLLVELKGKGGKNIIYQLWNTQKNFMQIVNEPELKKAIVKENHQATEEKGIEKILDDSFTSPANKKAIRQVIKVVDDVVKAAGGKKPAQFAIEFTREPKWNPHLSNIRGTKLSKIYEDTAKKLVDQSLTDSLRENMTNRNLLKDEYFLYFIQGGRDAYTGKKIDIDDIPKKYQIDHILPQSFITDDSLDNRVLTEIEINQKKGKKYASHLFAAQPAFGLNQSISEMWKTWQKAGLISQRKLNNLLFDPDLVKDKQKKGFINRQLVETSQIIQLVSIILQDKFPDTEIITVKAGYNTALRKKLKLYKSREANDYHHAIDAYLTAICDNFLYQVYPNFRPFFVYGQFKKFSQDTDKQKEAIKYYGLKNFLLPLLDDSMGDEAMVNHTKHVVFHKQRDIFNRLIQAYNYKYMLVSRETTTENSNMFNMTIYPRGERDRKKTRKLIPKGKDLDPAIYGGYSGNTDAYMVIVKIEKTKETLYKVVGVPMRALASLKKAQKKGNYDQELNKVLEPLIMFNKNGKSKAGIKGFTVVKDHVHFKQVVIDGDTKFMLYSAQYRANAKQLTLSQETMKVVTDNTDDMDQKDADKDQLLLNAYDEILEKVDQYLPLFDINGFRQGLHDGRAKFAALKTSEKKYTLKNILNGLHDNLVTPNLKNIGIKTPFGLMQSSSGITLSPNAKLVFQSPTGLFEKRVKLTNL
>CP029544.1|AWN32961.1|350733_351642_+|L-lactate-dehydrogenase
MSNKIGIIGDGHVGSTVAQQLILTGLVDDLVMIDVNEAKVRADQLDFQDAMANLKHHITININDYSALKDADIVISAFGNIELEAGGERFAELNYNRDRIGDIAKSIKKSGFNGILLVITNPVDAITNMYQELTGLPRKHVIGTGTLLDTARMKRAVGELMNVDPRSVEGFNLGEHGNSQFTAWSTVKVLEKPITEVAQAKHLKLEDLNDEIKFGGQTVYKGKQYTNYGISAAVTRLVETIQSDAHTEMPVSNYQEKYGTYLSYPAIVGRDGIIQTVELTLTDEEEKKLQASAATIKEKANK
>CP029544.1|AWN32960.1|349599_350541_-|aldo/keto-reductase
MRQIKIGNTNFTGSAIALGIMRMNKLSVDEAVKTLETAHQAGINYIDSADIYGHGKSEEVFGAAFQKSSLTRDDFYIQSKTGIYENPKLDYKTTRYDFSKKYLIKAVDGILSRMKIDYLDSLLLHRPDALMDPAEIAAAFDELQRDGKVRHFGVSNFNPMQVDLLQSGVSQRLLINQLQLSVMHTGPIDFNIHTNMTDERSIDHDRGVLDYSRLHNMTVQAWSPFQYGQIEGNFIGNPKFPEVNEALQKVADQKGVSKNAVAAAWILRHPANTQVIIGTMTPAHIIDSAKGADISLTAQEWYDIYLAAGNDLP
>CP029544.1|AWN32959.1|348178_349444_+|RNA-polymerase-sigma-54-factor
MTRLQKMVLKPKEQLVSRLFLSPKLRQNLTVLSYSTHDLIKAMKELSVSDPFVLLREPQSDAMQNLEWLRAPEGENLVDHLLVQVDLSDWHDWEKRAVKMLIYHLDEDGYLRVSLTKIIEHSEFSLENLTRAKKLLQSLDPCGIGAVDLNECLLLQARHKPHFNPVALEILLNKQLEILADPNQWHDSVFSETELTAALASIQTLDPTPASDYVTGKNTQYLLPDLIYKVNDGHLMIENLQSQIPEMVFDEQAFNELKEQADENKYFSQQKQRYEEMKNAIAERQKTIMRLGEFVGQFQYEFLTTMHKKELKPLGLKETAQALNLAPSTISRAIKDKYIQCQNKIFSFKMLFPREVTTDLSQARVEYDLCKIIRKENTHAPLSDQQLVEIFAKHDVFLSRRVIAKYRNKLKIPNSYARRAK
>CP029544.1|AWN32958.1|347452_348157_+|MgtC/SapB-family-protein
MDIAVTLPEIIARLALSIVIASVIGFDREHKNRPAGIKTHVLVCVGACIIALIQKKIGFDALQIANAQPKMAGVVRADEARLIAQVVSGIGFLGAGTILVQHRTILGLTTAASLWAVAGIGLALGMGDYAIGVVGAIAVIIVLVFSKRLIHIHPMKKLEIKYKHKVETKEFINDYFKKHNITVVNVNFKVTQNLNDITYVNIYDIETPRSIDYANIIEDLSMNKNVMEIQLVSI
>CP029544.1|AWN32957.1|346624_347452_+|PTS-system-mannose/fructose/sorbose-family-transporter-subunit-IID
MKLTKDVSPTDKKIINRIFWRSFTVFASRVGATKAHAPGFMYSIMPALDEYYKNDKEGHRKAMMRHTTWYNITQNVGTFVMGLVASMEKKTAQDPNFDPETTVAIKTSLMGPLSGIGDSIFWGVLRVIAAGVGISLASQGSILGPLLFLIIYNVPSILTRYYLTYMGFTLGDTFIQNMYESGSMKLLNKAASTLGLMMIGCMTATMVQFKSKLSIPITGGKPILIQTYLDQLWKGLVPLLVTLGCYWLLSKKVNVNWILLGVLVLAIILGLIGVV
>CP029544.1|AWN32956.1|345788_346628_+|PTS-mannose-transporter-subunit-IIC
MLQTAFLAALCVFICLGGNWLWGQTMIERPLVVGTIMGLIMGDMRTGILIGASLEAIFMGAVDIGGALSAEPVTATVLATTFAITLGVNTKAALALAVPIGVFAAFILMFMKNVVMNIFAPLVDKVASDDNSKGLTRLHFGMWFLNYFIFSLVTFFAVLAGARPVQQLVAKIPANLMAGLAATGGLLPAVGFAILMRMLWSKQLSPYYFLGFILAAYMNLPSVAVAAVGIIIVVIQWIRDKQIMDIENKQKEMVAMPHNENQTKSTETTAEQEEEDFFS
>CP029544.1|AWN32966.1|358808_360062_+|MFS-transporter
MFVYMKNILKSNNNKLYLLSVITDNLGSSLMSFALPLMILDITKNGIHLSIISVIETLPILILGLPAGALTDKFDVKNILIFSDLIRLISYLILSASFLFHLTVNCMIFIIYAVSLVVSVTNTLNMVSEITFVSFLVEKKDFSELNSLVYGIQYAANFALPILGGILYQYISHSLLIGICAAFYLISLLLEKKISLQTRATVFSGYAALKSALKTVKTDIKEGLQYTLNLHSVLYPLILAALVNIASANFDNDSLIILRTQIGLSSQNIGIISAISAISALIGTLVVNWLNERIGFNLLFVLLIFAGAFFRVVFVLSQNVPTMVLAIAFVSIIESIINISIITNRQQQVEHRYLGRVTSIYKTVLIGVNSLGFLLGGLVAKKIGSRSGIGVSAIALLLVTVISIYLLTHKIKQDNKP
>CP029544.1|AWN32967.1|360391_361639_-|hypothetical-protein
MKLFIDIVLILGGCSFVFDLFWMLYLTFSDNVKQDPYGERSRNFKTLFLLIPAMNEYQALRKNIPKLIDLQKQCEDFIKLKLVFIDDDSNDGTSSLLQKYAYHPDIIVIHRIKPNAQLGKGPALQDAANHIFKMNYSIDETIIGVVDADSHPSKKYLQQVVHAFDHSNYDLVQTRVNIYNLNHNIAVMQNFEFSIYNSLLQMARTNWGSSLASGNGQFMTLKMAKDVGWSSSLLEDCEFSLKGLLKGYHGTFLNTVSIAQQGVIHYKKLIRQRTRWCQGGFQCLNNYGIRIVRSNSVPTMVKTFVMFFLLIPVFSIIITPAAAISLIALLIYARTNPWLSISIIVGLLLVQYLSNSLLIIKQWREAQFDAPISFSILIKIIFLLDIYRWSLAIVPYKALGRLIVGNNSWSKTSHN
>CP029544.1|AWN32968.1|362083_362998_-|prolyl-aminopeptidase
MKTGTKIITLDNGYHLWTNTQGKGDIHLLALHGGPGGNHEYWEDTAAQLQRQGLNVQVTMYDQLGSLYSDQPDYSDPAIASKYLTYDYFLDEVDEVREKLGLDNFYLIGQSWGGLLVQEYAVKYGQHLKGAIISSMVDDIDDYVKAVNRRRQEVLPQTEIDFMHECEQNNDYGNARYQEDVNILNINFVDRKQPSKLYHLKDIGGSAVYQAFQGDNEFVITGKLKDWHFRNQLKNIKVPTLLTFGENETMPIATAQIMQKEIPNSRLVTTPNGGHHHMVDNPDVYYKHLADFISQVENGTFKGE
>CP029544.1|AWN32969.1|363159_363903_+|oxidoreductase
MAEPKWLKDMDKDQYLKEDFDAQGKSRYTVADLIKNDPDWLDKAAEKTHAATGDDYVKLDSGLLTVNQINWMLRNTIGELTFVDDNNQFLWYNRPVDPNVKMKAKRVPAQVGNTMGEVHPDVRDVIPEAKKVVHALRTKEGGHDTVYMPVPTGNLKQLVLHYYKRVEDDEGNYAGIYEWVQDLYPLVKYFCETTGQKLVVDPDATTGATYRRNSAPDAQTKASTKAAATAEEAKVVEPDTATGASHN
>CP029544.1|AWN32970.1|364121_364571_+|hypothetical-protein
MTFYTLKYIEQNQNTSKTILYVLIAVAALTMIAFTVLYLRHRFDTRYRDLGIIALLFLLLFMGTQYEKYVQTNVVKSQSEQIGPFIKSVAKDNKVPVSDVMVNSTTLQDGLIVRVDSKDIDYQLELNDDNNSYTLKQAHVINHKVDVKN
>CP029544.1|AWN32971.1|364583_365219_+|hypothetical-protein
MNYTQLFIKFVLGVLTLIFQINVFGKSNIAPTTALDQLQNYVLGGIIGGVIYNANISVLQFLLVLIVWTLVVFILKFAREHSNFIRSLIDGKPIQIVKNGQVLPRNCLSAGLSANELMFKLRSQGIYSVDQVKNCIFEKNGQLTVIKKDENNVRFPLINDGQINQDVLESINKDEDWLNKQLKKAGYDDPSDIFLGEFENGQVSFTGYKQK
>CP029544.1|AWN32972.1|365232_366054_+|Sir2-family-NAD-dependent-protein-deacetylase
MENLNKAQNLVQNAEAVIVVAGNGLAKAEGLDLLGEENFERAFPDIVQKYDVHSVGYALDQHLSSWSEKWQLWSRLIQKYSLAYRPSETLKQLKQLIGKRQYFIATSTFGHFFETAGFNENRIFNAFGDWTKMQCSSGVNHGLQDSYNVMQKFVAAKSGAALEHLVPKCEVCGQPLEIHMPLNDHFYPDTDANTRFRWFLTGNEDKNTVFLELGVDETSPQLREPIEHLVAEYPQWSYVAADFPQETLLPEIQERSAGVNGNTASLINYLVTE
>CP029544.1|AWN32973.1|366064_367018_+|DNA-polymerase-III-subunit-epsilon
MSIYVKNGVLHVSGVQDKIRGKGQEWPDFIADYTMLDIETTGLNPYRDHVTEMGAVKVRNNKVVDEFSQLVVYPRSNRVPSFITKLNGITEELLLKEGKPVKEVMKSFRSFIGDDIIIGYNVNFDLNFLYDLTQKFHLPELNNDYVDVLRLARVYYPKQHNRLLDCIQRAGIAQVEQHHGLDDSLDTKKVYDDFRQHFTPELLEKAQGKLKNFDLLQDELETWELGFRNPVNNKKIAFAPEVEIDAAEAAQMVNNMNGIAQTGVKADTDYLIMSDDGFFSKSNAEALKAKEFNRAGSKIKRLSESYFLNMLDEWARS
>CP029544.1|AWN32974.1|367158_368034_+|DNA-nuclease
MARRRGRRSNKANISDFWAIVILVLFLIWFISTKGGSDPNGHQTIDRITCSDHQKNNKITQAKPAAKVYGGLSSQDYQKLANLDFKSGSSAYITVNNDHSTLIKNAWRVNRVIYANLDRLNRTSHSNTAFLQKRNVANDSLRVRQFVEPTGWHYNRRNGTQIYNRGHLIAYSVSAGIDQEGNFNPDNLSGDQNNPKNLFTQSAFSNQRIQTMFESRIRVALRQNKKVIYQATPIFRGEELMARGINLQAVSTDGELDFNVYLFNVQPGYSFNYNNGRAKVDHEMLVEENYN
>CP029544.1|AWN32975.1|368355_369441_+|ABC-transporter-ATP-binding-protein
MDNNKFVEVKNLRKVYDNGHEAIKNVSFSVKKGDLVCLLGPSGCGKTTILNMLAGLLNPTEGDILFNGKSVIKVAPKDRHIGYVFQNYALYPHMTVLQNVMFPLIVGANKKSKAEAKEIATKYMELTQITELADQKPGNLSGGQQQRVAIARALVQEPQILLMDEPLSNLDARLRLKIREEIRSLVKTVGITTLFVTHDQEEALSIGDKIILFNDGIIQQDDLGQNFYLEPNNYFVANFVGNPVIDNFKVTKTANEIKSSQFTINLADMEQSRFKRELPDGEYVLSVRPENIVPDPDGLFETKVDDIELIGRERILKFTFDNQQVRSLINLEAPIKHGDVVKLKMRLNRVFLFTPEGERVY

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Crispr_ID: CP029544_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029544_3

1053720-1054283

Orphan

Consensus_repeat	Method
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	PILER-CR
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CRISPRCasFinder
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CRT

8 spacers

The CRISPR arrays of CP029544_3

>merge|CP029544|3|1053720-1054283|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAACCGATTAAGTTTGCCAACGGTGGAATTACTGGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACTTCCCAACGTGGTACTTTTTTCAATGGAGTGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACGCAAGTGGTGGTAGTGGTGTGCTTGGAACAGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACATATCCTTAGACTGATTTTCATAAGTTTTAGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACCCAACGTAATTAAAGGCTCTACCATTGCCAGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACGAATGGTTTCATTTTTTTGAAACCTTCTAAGTTTTAGATGGTTGTTAAATTGATGATGATTAGAACAAATTCAAAACCAGCTTAATTCCAAAGCTTGTTTTAGATGGTTGTTAAATTGATGATGTTTAGAACTGAGTCTACCAGTGATAAACCTAGCGACTAGTTTTAGATAGTTGTTATGCAAAAGCAAAAAGTTAT

>CP029544|3|2|1053720-1054151|PILER-CR
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CGATTAAGTTTGCCAACGGTGGAATTACTG
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	TTCCCAACGTGGTACTTTTTTCAATGGAGT
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GCAAGTGGTGGTAGTGGTGTGCTTGGAACA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	ATATCCTTAGACTGATTTTCATAAGTTTTA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CCAACGTAATTAAAGGCTCTACCATTGCCA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GAATGGTTTCATTTTTTTGAAACCTTCTAA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC

>CP029544|3|3|1053720-1054217|CRISPRCasFinder
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CGATTAAGTTTGCCAACGGTGGAATTACTG
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	TTCCCAACGTGGTACTTTTTTCAATGGAGT
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GCAAGTGGTGGTAGTGGTGTGCTTGGAACA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	ATATCCTTAGACTGATTTTCATAAGTTTTA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CCAACGTAATTAAAGGCTCTACCATTGCCA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GAATGGTTTCATTTTTTTGAAACCTTCTAA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	AAATTCAAAACCAGCTTAATTCCAAAGCTT
GTTTTAGATGGTTGTTAAATTGATGATGTTTAGAAC

>CP029544|3|2|1053720-1054283|CRT
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CGATTAAGTTTGCCAACGGTGGAATTACTG
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	TTCCCAACGTGGTACTTTTTTCAATGGAGT
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GCAAGTGGTGGTAGTGGTGTGCTTGGAACA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	ATATCCTTAGACTGATTTTCATAAGTTTTA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	CCAACGTAATTAAAGGCTCTACCATTGCCA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	GAATGGTTTCATTTTTTTGAAACCTTCTAA
GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC	AAATTCAAAACCAGCTTAATTCCAAAGCTT
GTTTTAGATGGTTGTTAAATTGATGATGTTTAGAAC	TGAGTCTACCAGTGATAAACCTAGCGACTA
GTTTTAGATAGTTGTTATGCAAAAGCAAAAAGTTAT

Protein	Signature genes	Signature genes Name	Protein_function
CP029544.1\|AWN33563.1\|1066540_1067977_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP029544.1\|AWN33558.1\|1057757_1058276_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
CP029544.1\|AWN34293.1\|1060546_1062823_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
CP029544.1\|AWN33551.1\|1047421_1048450_-\|hypothetical-protein	unknown	unknown	unknown
CP029544.1\|AWN33562.1\|1064798_1066388_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP029544.1\|AWN33552.1\|1048593_1049178_+\|PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
CP029544.1\|AWN33564.1\|1068204_1069347_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237653
CP029544.1\|AWN33561.1\|1062864_1064697_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP029544.1\|AWN33547.1\|1043218_1043626_-\|carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|223672
CP029544.1\|AWN33549.1\|1044835_1045666_+\|hypothetical-protein	unknown	unknown	unknown
CP029544.1\|AWN33548.1\|1043766_1044138_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133384
CP029544.1\|AWN33559.1\|1058507_1059449_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|381309
CP029544.1\|AWN33554.1\|1051109_1051940_-\|DegV-family-EDD-domain-containing-protein	unknown	unknown	gnl\|CDD\|273257
CP029544.1\|AWN33550.1\|1046111_1046798_-\|hypothetical-protein	unknown	unknown	unknown
CP029544.1\|AWN33553.1\|1049255_1050809_-\|lactate-permease	unknown	unknown	gnl\|CDD\|224535
CP029544.1\|AWN33560.1\|1059918_1060446_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
CP029544.1\|AWN33556.1\|1054498_1054831_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227613
CP029544.1\|AWN33555.1\|1052183_1053470_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP029544.1\|AWN33546.1\|1042356_1043064_-\|branched-chain-amino-acid-transporter-AzlC	unknown	unknown	gnl\|CDD\|224215
CP029544.1\|AWN33557.1\|1055048_1057322_+\|proton-efflux-P-type-ATPase	unknown	unknown	gnl\|CDD\|319771

Protein	Function_ID	Function_description	E-value
CP029544.1\|AWN33563.1\|1066540_1067977_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	5.52864e-52
CP029544.1\|AWN33558.1\|1057757_1058276_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.42368e-10
CP029544.1\|AWN34293.1\|1060546_1062823_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	4.83722e-176
CP029544.1\|AWN33562.1\|1064798_1066388_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.40382e-53
CP029544.1\|AWN33552.1\|1048593_1049178_+\|PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.60371e-28
CP029544.1\|AWN33564.1\|1068204_1069347_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237653	PRK14276, PRK14276, chaperone protein DnaJ; Provisional.	0
CP029544.1\|AWN33561.1\|1062864_1064697_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP029544.1\|AWN33547.1\|1043218_1043626_-\|carboxymuconolactone-decarboxylase	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	7.9589e-26
CP029544.1\|AWN33548.1\|1043766_1044138_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133384	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	6.97487e-46
CP029544.1\|AWN33559.1\|1058507_1059449_-\|oxidoreductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	1.80397e-135
CP029544.1\|AWN33554.1\|1051109_1051940_-\|DegV-family-EDD-domain-containing-protein	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.63291e-51
CP029544.1\|AWN33553.1\|1049255_1050809_-\|lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	5.39821e-118
CP029544.1\|AWN33560.1\|1059918_1060446_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.0856e-96
CP029544.1\|AWN33555.1\|1052183_1053470_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP029544.1\|AWN33556.1\|1054498_1054831_-\|hypothetical-protein	gnl\|CDD\|227613	COG5294, COG5294, Uncharacterized protein conserved in bacteria [Function unknown].	2.68428e-12
CP029544.1\|AWN33546.1\|1042356_1043064_-\|branched-chain-amino-acid-transporter-AzlC	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	1.21765e-54
CP029544.1\|AWN33557.1\|1055048_1057322_+\|proton-efflux-P-type-ATPase	gnl\|CDD\|319771	cd02076, P-type_ATPase_H, plant and fungal plasma membrane H(+)-ATPases, and related bacterial and archaeal putative H(+)-ATPases. This subfamily includes eukaryotic plasma membrane H(+)-ATPase which transports H(+) from the cytosol to the extracellular space, thus energizing the plasma membrane for the uptake of ions and nutrients, and is expressed in plants and fungi. This H(+)-ATPase consists of four domains: a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. This subfamily also includes the putative P-type H(+)-ATPase, MJ1226p of the anaerobic hyperthermophilic archaea Methanococcus jannaschii. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0

>CP029544.1|AWN33555.1|1052183_1053470_+|phosphopyruvate-hydratase
MLKSVIENVHALEIYDSRGNPTVEAFVTLSNGVVGKAEVPSGASTGENEAVELRDGGSRVGGKGVSKAVENVNTEIAKALKGLDPHDQANIDRVMIELDGTPNKAKLGANAILGVSMATAAAAAKDSHQPLYRYLGGTDLEMPQTFHNVINGGEHADNGIDVQEFMITPVKKTSFRDGFEKIVNTYHTLKKVLEDMGYETGLGDEGGFAPNMKNSEEALQALHDAIVKAGYKPGEDIAIACDCAASYFYNKEDGKYHFEGKVFNDEELAQYYDKLLDEFPELISIEDPYDENDVDGMIKFTQSHKDRIQIVLDDFICTNPKLLTKAIKEGAGNASLIKLNQIGTVTETLETIRLSRKNGYNTMISHRSGETGDTFIADFAVAVNGGQLKTGAPARSERVEKYNRLLEIEEELGKGERLATFPDSVDKD
>CP029544.1|AWN33554.1|1051109_1051940_-|DegV-family-EDD-domain-containing-protein
MTKVRLIIDSGSNDQANSNLTVVPLTMTISGKDFVDNENLNIEEFIASMEKNTEEGKTSCPSINEWLEALSGSKRAIIMTITSGLSGSFSSAFQAKQIYEKDHPDSHVIVVDSRTAGPEISVILQEIQKLVNSNARFVDLEQKISDYKTHTHLLVVLKSLHNLALNGRVNMAVAKVAKVLNIDVVGTASDEGKLEPLAKVRGIKRALKEIIKLMGEMKYQGGHVIIDQCKNMKDAETLKAKILELYPEAAITIRPMRGLCTFYAEEGSLMIGFDDL
>CP029544.1|AWN33553.1|1049255_1050809_-|lactate-permease
MDLVKTVLAIIPIVWLILSLGVFHIRGDLACLIGFALSLILSIVGFHFSFSNSITAGIDGIIMALWPIIYVIISALFIYNISRKSGGMDTIMSMLTSITKDMRFLVLILAWGLGGFLEAIAGFGTAVAIPASILIMLGMNPIKAAVVCLVANTAPTAFGAVGLPVTTLAKVTGLGVTQLGYLIAIQLFVLMMLVPFVLVMMTEGKGLKSFKGKGVLVCTLVAGLTFAVPEIFITKYLGPELPSIVGSLVCLLFLVIIIRGYSKKDEAGSSSDEKEEKAPISTAEKIKAWVPFILVFCFIIFTSSMFPAIHNALASVKTSFHFYNGANAKPVDIDWLSSPGTLILLSSIIGGAIQGLSFKEMFSVLTSTIKQLVKTIITVCSIVALSKVMGYSGMIDVIAVSLVTLTGAFYPVISPIIGVLGIFITGSDTSANVLFGELQVQAAHALKVSPYWLAAANMVGATAGKMLSPQNIAIATGATGLEGKEGVILKKALPHCAWYTAVLCIIVFVAGKMLSYL
>CP029544.1|AWN33552.1|1048593_1049178_+|PAP2-family-protein
MNINFWIAILSAAILLLLIFNVRNSRRFNLFDHWLHHKLLIRKHDGIGWQIIAFINDPKLLVVLDVFLASFLISKNKNLLAFWVLFTLGFTDLIGIFLKKWMRRKRPILHSDLEEGYSFPSGHVLGSTVMALIIWQIFANQLGNRLLLILAIIWLMVVISRISLKAHFPSDILGATSLAVLCFSIAQQLLFLII
>CP029544.1|AWN33551.1|1047421_1048450_-|hypothetical-protein
MMIKVKYNLKLKLDFDEKQLKIDDINNMLDYEVRKMADNKTTKQETVGEALRDIAHHEHAFALADNSTNHIGDLAVYGTLYLLAILQPYMLRFEWIFVLLALVAVISLIRYQNFLRNKITCKKMTPFFVNTSLISTGVRAFVIGNAPLLAYSLYTKGQFNVFISIIAGLVVAIIGISWQYHYLINRQVIDRQEQSPKQTFKNATKFIINSCRKNYISRGYLVDIVCAFVVCSNNIAYKEFVLVKFEAWQFVLITLLVTLGAIVFQKFLRNKVAAKDISKSFKWGSLIMTAIRGYLIIAAPWIATCLFSGNAINWLAVNLIGLFVAVVATGSQYRYLEKVGVF
>CP029544.1|AWN33550.1|1046111_1046798_-|hypothetical-protein
MKYEKRNIISLSVSGIIAIFLSVLYNIFETVFCIKILLSILMLISFIIFFKSVKNFFFYKYEISKDTFFKFINFLVVVGSFFLFLFTIIFVFAFQNTFNLVLPYFLLFCMLTFWSFGYSVCRKVLKEKVNKAALNIYLFTVFKSVLSALATWIVIIYFFPLNCFDSILSAENLFRLFSKLLVDILTLFVPFFDMYNFTASEIEKYEQKEEEKKEEKIVKKRKITDYIK
>CP029544.1|AWN33549.1|1044835_1045666_+|hypothetical-protein
MKLLWIIALIIFVIYIIISDRKLENNKDYKEASTPSKNPSKELLVKRWWVWGLILVLICGFFVSNSKDSESHNETYKTTTHHFKKPSPIKKRKKLSAYTTKKVSKFIPVKNTAKAVTLGAGKYKVGRDIKPGRYVIKAVKGSGNLSNSDFTINVILGNDANGDRLTSFTTNLVKNDKIKIDWIESTSFTPTPDKYTYKTKISAGIWLVGLDIKPGRYVIRPIKGRGNLISEDGSDDNLNEILGKNAEKGQVTKVTADLTAGEVILSTIELIGLSKK
>CP029544.1|AWN33548.1|1043766_1044138_+|MerR-family-transcriptional-regulator
MKYSIGQFAELSGFSIDTLRYYEKQKLLFPSRDKNNRRFYTEKDVAWISFISRLKKTGMSIKEMQKYAKLRYAGDQTIPERLVLLFNQLDNLHEEEKKINDNIAFVEQKIKTYLKTIGDLKEG
>CP029544.1|AWN33547.1|1043218_1043626_-|carboxymuconolactone-decarboxylase
MKNDERYQKGLANLEKVDSEGGKSVIKSLAGLSEDVGRYIIEFAFGNIYDRGVLDLKQREMITITTLLTQGDTEPQLNVHINGALNVGLTPEEIIETFIQTIPYVGFPKVLNAITVAKEVFKDRGIDFTKTNKNK
>CP029544.1|AWN33546.1|1042356_1043064_-|branched-chain-amino-acid-transporter-AzlC
MDSSLTKRAAVIDAIPTIFGYVGIGMAFGIIGKASGFSTLNVFLMSVIIYAGSAQFTTVSMLAAGSPIASIILATFLVNSRMILMSTTVARYFKKDKLGKGVLIGTFLTDESFALSMNKVNYTSGKMTFDWFNTANIVSYITWLIATLIGSLLGSFVTSPEKFGLDFALVAMFIGLLYLQVVGDKKLQKLLQVIVIAITFVLTYLLTIVLPANMVVIVVTLIGCSLGMVLKYVFF
>CP029544.1|AWN33556.1|1054498_1054831_-|hypothetical-protein
MNFRKIFFVFVLAIAVFFCFPFFIHNEIFDRFNLTIPETKSYAQVEKNTQKYFNVQAYDAKTGKKLPYRIRRVGGYDPSKQYIKIDHRGQYVKKIQYVSKREFNKKVNNN
>CP029544.1|AWN33557.1|1055048_1057322_+|proton-efflux-P-type-ATPase
MSEKFKGLSQAEADKLLQKNGLNEVPEPQFNFFKEFLSKLWNLSAWILEAALLLECILGKWIQSLFVLLMLLFAAWNGASKKKQSRKVLNNISHKLTPSISVQRDGKWQNIDSKYLVPGDLISMQAGDVLAADVKLLEGQISTDESSITGEAKTVRKNPQDTAYAGTTVTEGNGLAQVTATGANSRSGKTINLINNSAAPGHLQQLLTKIIYYLCILDGILTLVIVVASFFKGGDLNNLINMLPFLAMMFIASIPVAMPSTFALSNSFEATRLSKEGVLTSDLTGIQDAANLNLILLDKTGTITQNKTAVGQWTNFSSLDNNQALEFATAATDQRNKKIIDTAIDDYVTGLGLEVKTGTDFTPFTSSTGYSMANYNGHNIKLGSFKQLSLIDQNANEIAKDVDFSAGRSVAVLIDDKLAGVFILQDMVRPDSKKSLGELKKRGVKPIMLTGDNQKTAEAVAKQVDLQGDVISIHDFNDETDTSKLAGIADVLPEDKLKMVKFFQKKGYIVGMTGDGVNDSPALKQAEVGIAVSNAADVAKRSGKMVLLNDGLSSIVKILDAGHRVYQRMTTWSLTKLARTAQLTMLLTFGYLFFNYIPMALNAMVIYTIMNNMVTMMIGTDRTHITYKPENWNMARLAKIAFSLAFGWTAIGIFAIAYLNTHGYSHGTVSTMVYVYLVLSAMFIILITRTKRYFWQDYPSKAVGLTQLGDVILTVILALFGIAMTKITWTNLLLTFAAALIAAIIIDLFYQPIMKNR
>CP029544.1|AWN33558.1|1057757_1058276_-|GNAT-family-N-acetyltransferase
MQLRKATMADFDQIIAILKDGANQLAEHGVNQWQGEYPSKGQIKEDIENGWAFLAVSEDKETVGAIAIVDGPDHIYDHLDGEWLCDTDKYVVIHRVAIHSQHSGKGYATELLRAVINDIKDNRADIDSIRIDTHEDNQAMQHLIAKMGFTKVGLLHGVYRPDETSYVYELKK
>CP029544.1|AWN33559.1|1058507_1059449_-|oxidoreductase
MDKIRIGKSDVYTTKLGLGTNKVGGHNLFKNLNEEDGYDLLRGALKQGINFFDTAYVYGLGRSEEIIGDVLQNYDRSKVIIATKAAQDKSQNMAPNNSAAFIKKAVDEALLRLKTDYIDIFYLHYPDENTPKDEAIETLDEIRKAGKIRAIGVSNFSLSQIKEANKNGKVDIVEDHYSLVRRAPVKEELEYLHEQNISFVPFFPLASGLLTGKYGADDWNKFNSTDGGKLLGDFNEDRYDRAIKGIAGIREIATKHEATVTQTVLAWYMANPAISVVIPGARNADQVRSNAKAMSVKLSPSEYQEIDQLFSDF
>CP029544.1|AWN33560.1|1059918_1060446_-|adenine-phosphoribosyltransferase
MANDFEKHIASVKDFPNKGIIFRDITPILQDGKLFQAATHELAEYVKSKNADVIVGPEARGFIVGCPVATELGIGFVPARKPHKLPREVERASYDLEYGSNSLEIHKDAIKPGQRVVVCDDLLATAGTLRACKQLIENLGGELVGSAFYIELPDLKGKEKLPGLDVYSLVKYHGA
>CP029544.1|AWN34293.1|1060546_1062823_-|single-stranded-DNA-specific-exonuclease-RecJ
MEWRKRKGDELAPAIIEKYQLSPITAKLLSLRRINTAEKIDYWFNATEADLADPFLMHDMKKAVNRINQAIDAGEKITVYGDYDADGITATTIMVETLGILGADVHFFIPDRFKDGYGPNLESYKKIVADGTKLIITVDNGITGVNEIAFAKSKGVDTIITDHHKFQEQVPDCYALVHCNYPGQKYPFDDYCGAGVAYTICRALMQEPMPELLELAMIGTIGDMVKVSGEGHVIVKRGLKMLNETERPGLRALIKKAVLQLGHIDETDVGFNIAPRLNAVGRLANASLAVELLLCDTDEKAEEIAAKVEKLNDERKKLTATVFQECLEQVKNNGWDRSQTLVIYQPDFHEGVLGLVANKLVEKTHKPTLVLTKNEAGIIKGSGRSVVGYNIFNALNPLKDKLFLKFGGHDFACGLSMTEEKIPSLRKAFENNFNGSYNQNIRDYDFELPFANLDLKTIAEIKLAGPFGTDNVEPVFSIKHPDITGCFYMGADKNHIKLTVSKSNKKLNVVGFNKKYLTRVLLPYIDQLFIGLQENCFRNQTKVQGIIKGIVFAAPKLAIPAPVIDLRTEKYVMGFADRYLLFDEKNKISASTKYDIDPAKITLINDYDSEGEVAVFLDVPHNQSELDAALTNNYAQLYLRFILDQLPVTQMPVKSDFEKLLRYVYTHPGLSIDDYRLVGPFLQQSYDHILFILRVFSELHFIKIADNKIYAVKHPAKSKLTASRYYLATRSQIAFIRELRNMPSKKLLMYVNEQLKQH
>CP029544.1|AWN33561.1|1062864_1064697_-|elongation-factor-4
MDITKLQNYQKRIRNFSIVAHIDHGKSTIADRILELTDTVSERQLKNQMLDDMPLERQRGITIKMNSVEIKYHAQDGEDYIFHLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVQAQTLANTYLAIDDDLEILPVINKIDLPSANPEQAKEEITEMLGLDASDAVEVSGKTGQGIKELLERIVKDIPAPSGDLQAPLKALIFDSKYDDYRGVVLSVRIEEGTVKPGDKIKIMNTGKEYEVTEVGVSSPHPVKKDILIAGDVGYLTANIKSVRETRVGDTITAAEHPTAEPLPGYRQIPPMVYSGMYPVDNGKYDDLKEALQKLQLNDAALEFEPETSTALGFGFRCGFLGLLHMDVVQERLEQEFDLDLIMTAPSVDYHATMNDGTTKVIDNPSDLPSAGEYKEVQEPFVKAEVMVPNDFVGPVMELCQRKRGEFVTMDYLDKYRVNVIYNMPLAEIIYDFFDDLKSSTKGYASLDYEITGYRATDLVKIDILLNKQVVDALSFIAHRDEAQNRARQMTSMLKKLIPRQNFEVDIQGAIGAKIISRATVKPYRKDVTWKIHTGDPDRRAKLLEKQKRGKKRMKAVGHVEIPQDAFMAVLKMNDDDLN
>CP029544.1|AWN33562.1|1064798_1066388_-|ABC-transporter-ATP-binding-protein
MTFKGLYATNKIRMIVILLLEFITSGLVIGTSYINTYIFSFIRKRMINEFLLFCLIVLFLYFTSYLGMNFCQYLIEKQIQQYNHQVRAEIVAHFFNDYVHHSPNKVQNILTNDLNIIKSSSLSIYTDIPYYAAQILFVILALWSFHWSLLIIVLFLGSLNLLLPRLLRKPLRKAVQNLSLANASYLNTAENWLDGLAELQNFMAGKKLSTVMTGASKKLEKANVNRTKTAQFLSVVNKASSVLLNFVLLVGTALLITRKIIPFGVIITVENFSANLLEALQSLTNEVGQISSAGQLNQKVAKERVPVTSPPEGMQPICLETHNLSYIFPNGQKLTFPDITIKPHEKVLLMGDSGSGKTTLFKLLLGELKPTTGVVDFFDQNKNKLNSQNLNLGYIPQSPVLFPVSIKDNITMFNKDLEENLKRVIKNTCFNYDLSKFAEKEETIINLNNLNVSGGQRQKIVLARSQIHENQFLLLDEGTSAIDEESSAEIINNIVDSPITVFMIAHNLSQKIKNKFDKRISLNKKNKSN
>CP029544.1|AWN33563.1|1066540_1067977_-|ABC-transporter-ATP-binding-protein
MKLSNLIKTNILNSIIIVSLIVIYGCGTAFSSYVIKFAYNSLSKSHFFQFLYFILVSLITGLVAFIINSVATWLYSRQLQQYIGLIRENLVKHYYHGKSVSTAAMINNLNNNLQLLTDQYANQVLRILSSLFVMITSTIALVMFHWSIAVLVITLVVSTLLVPKLTHKALTKATKKISEQNKKYLNTIFQWFNGLAELRRYLAFDAFSHYLTKKGTDLEQSYVDRQKVMGLAQFINGCANSFSQVAVTFLATILFFAKIVSFGTIIAAGTFASSIFNSALTITTALTRMQSTKNINQQLNEQQREIPSTYSNEANFSVIKTRSLKYKYPNNREISYPDMTIKKGEKILLQGRSGSGKSTLFKLLLAELKPTSGQIYFCDKKGNKVKVDRSQISYLAQDNFLFPVSIKENITMFNSKLNKVVEKYVKSVQLESDVAGFSAGLETIVDVDKDNLSGGQRQKIVLARNEIQNKPIILADES
>CP029544.1|AWN33564.1|1068204_1069347_-|molecular-chaperone-DnaJ
MAQEDYYSVLGVDRNASDKEITSAYRKLAKKYHPDLNHEPGAEEKYKEVNEAYEVLHDKQKKAQYDQFGSAGVNGQGGFGGAGQGYGDFGGFGDFGDIFNDFFGGATGANQRRANPTAPTRGEDLDYTLTIDFMDAITGKKTQVSYTRSETCPTCKGNGAEKGTHPITCDKCNGSGYMTVTQKSMLGVIRRQTVCDKCHGRGVIIEHPCQTCHGNGVIDGKNTIEVNIPAGIDNGQQLRYDGQGEAGKNGGPYGDLYISYRIKPSKEFERKGTTIYTTVPISFAQATLGDEINVKTVHGNKKLKIPAGTQPNKEFTLHGQGVPYLRGSGNGDQITTVQVQIPKSINEKQKQALVEFVKAGGGSITPQEKGFFERLKEKLQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029544_3	3.5\|1054020\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054020-1054049	30	MN855735	Bacteriophage sp. isolate 111, complete genome	15380-15409	0	1.0
CP029544_3	3.8\|1054218\|30\|CP029544\|CRT	1054218-1054247	30	MN855989	Bacteriophage sp. isolate 357, complete genome	797-826	0	1.0
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	MN856070	Myoviridae sp. isolate 211, complete genome	8803-8832	1	0.967
CP029544_2	2.17\|358708\|30\|CP029544\|CRT	358708-358737	30	MN855735	Bacteriophage sp. isolate 111, complete genome	16483-16512	1	0.967
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	MN856061	Myoviridae sp. isolate 371, complete genome	3017-3046	2	0.933
CP029544_3	3.2\|1053822\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1053822-1053851	30	MN856008	Siphoviridae sp. isolate 424, complete genome	25563-25592	2	0.933
CP029544_2	2.7\|358567\|39\|CP029544\|PILER-CR	358567-358605	39	MN856070	Myoviridae sp. isolate 211, complete genome	8803-8841	3	0.923
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	MN855683	Siphoviridae sp. isolate 326, complete genome	1509-1538	4	0.867
CP029544_3	3.1\|1053756\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1053756-1053785	30	MN856008	Siphoviridae sp. isolate 424, complete genome	6713-6742	4	0.867
CP029544_3	3.7\|1054152\|30\|CP029544\|CRISPRCasFinder,CRT	1054152-1054181	30	MN856015	Myoviridae sp. isolate 136, complete genome	6938-6967	4	0.867
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	632205-632234	5	0.833
CP029544_3	3.4\|1053954\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1053954-1053983	30	NC_013373	Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence	12176-12205	5	0.833
CP029544_2	2.7\|358567\|39\|CP029544\|PILER-CR	358567-358605	39	MN856061	Myoviridae sp. isolate 371, complete genome	3017-3055	6	0.846
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	MK238400	CrAssphage ZA, complete genome	97726-97755	6	0.8
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	NC_041878	Pectobacterium phage CBB, complete genome	316617-316646	6	0.8
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	MT006214	CrAssphage LMMB, complete genome	97859-97888	6	0.8
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	MK415408	CrAssphage GF1-2_000079F, complete genome	79743-79772	6	0.8
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NZ_CP011513	Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence	151305-151334	6	0.8
CP029544_3	3.5\|1054020\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054020-1054049	30	NZ_CP015111	Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence	163223-163252	6	0.8
CP029544_3	3.8\|1054218\|30\|CP029544\|CRT	1054218-1054247	30	NC_019517	Enterobacteria phage vB_EcoM-FV3, complete genome	79351-79380	6	0.8
CP029544_3	3.8\|1054218\|30\|CP029544\|CRT	1054218-1054247	30	MT740314	Escherichia phage JEP1, complete genome	122284-122313	6	0.8
CP029544_3	3.8\|1054218\|30\|CP029544\|CRT	1054218-1054247	30	MK883718	Escherichia phage vB_EcoM-ECP32, complete genome	78607-78636	6	0.8
CP029544_2	2.10\|358246\|30\|CP029544\|CRISPRCasFinder,CRT	358246-358275	30	MG592506	Vibrio phage 1.135.O._10N.222.54.B6, partial genome	37237-37266	7	0.767
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	NC_001901	Bacteriophage N15, complete genome	17777-17806	7	0.767
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	KC821615	Cellulophaga phage phi12:3, complete genome	27770-27799	7	0.767
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	NC_021791	Cellulophaga phage phi12:1, complete genome	27767-27796	7	0.767
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	MT909815	Enterococcus phage iF6, complete genome	5585-5614	7	0.767
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	70176-70205	7	0.767
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	NC_048015	Cyanophage S-TIM4, complete genome	36243-36272	7	0.767
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	MH512890	Cyanophage S-TIM4	36243-36272	7	0.767
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	NC_015283	Prochlorococcus phage P-RSM4, complete genome	36216-36245	7	0.767
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NZ_CP022984	Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence	31395-31424	7	0.767
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NZ_CP022984	Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence	91860-91889	7	0.767
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NC_015218	Lactobacillus amylovorus plasmid pRKC30SC2, complete sequence	2771-2800	7	0.767
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NC_016035	Lactobacillus buchneri subsp. silagei CD034 plasmid pCD034-1, complete sequence	3000-3029	7	0.767
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_CP032754	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed3, complete sequence	11752-11781	7	0.767
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_CP013151	Lactobacillus plantarum strain MF1298 plasmid pMF1298-2, complete sequence	25289-25318	7	0.767
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_CP040857	Lactobacillus plantarum strain 202195 plasmid unnamed, complete sequence	30374-30403	7	0.767
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_CP035115	Lactobacillus plantarum strain SRCM103295 plasmid unnamed2	55655-55684	7	0.767
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_LN898145	Lactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence	14672-14701	7	0.767
CP029544_3	3.8\|1054218\|30\|CP029544\|CRT	1054218-1054247	30	MK883717	Eschericha phage vB_EcoM-ECP26, complete genome	95951-95980	7	0.767
CP029544_2	2.12\|358378\|30\|CP029544\|CRISPRCasFinder,CRT	358378-358407	30	LR606149	Rhizobium sp. Q54 genome assembly, plasmid: 6	193121-193150	8	0.733
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	MN013085	Klebsiella phage vB_KpnP_NahiliMali, complete genome	7974-8003	8	0.733
CP029544_2	2.13\|358444\|30\|CP029544\|CRISPRCasFinder,CRT	358444-358473	30	NZ_CP020115	Nodularia spumigena UHCC 0039 plasmid pUHCC0039a, complete sequence	89032-89061	8	0.733
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	MN693671	Marine virus AFVG_250M196, complete genome	4234-4263	8	0.733
CP029544_2	2.15\|358576\|30\|CP029544\|CRISPRCasFinder,CRT	358576-358605	30	MN693776	Marine virus AFVG_250M197, complete genome	28888-28917	8	0.733
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NZ_CP022984	Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence	80164-80193	8	0.733
CP029544_2	2.16\|358642\|30\|CP029544\|CRISPRCasFinder,CRT	358642-358671	30	NZ_CP012899	Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence	310063-310092	8	0.733
CP029544_2	2.17\|358708\|30\|CP029544\|CRT	358708-358737	30	CP032840	Aeromonas veronii strain FC951 plasmid unnamed	855-884	8	0.733
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_CP045196	Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence	18033-18062	8	0.733
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NC_011251	Borrelia duttonii Ly plasmid pl41, complete sequence	21213-21242	8	0.733
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_CP012534	Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence	25212-25241	8	0.733
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NC_011254	Borrelia duttonii Ly plasmid pl42, complete sequence	10752-10781	8	0.733
CP029544_3	3.7\|1054152\|30\|CP029544\|CRISPRCasFinder,CRT	1054152-1054181	30	NZ_CP023400	Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence	148624-148653	8	0.733
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	MK170447	Methanosarcina virus MetMV, complete genome	47209-47238	9	0.7
CP029544_3	3.6\|1054086\|30\|CP029544\|PILER-CR,CRISPRCasFinder,CRT	1054086-1054115	30	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	200769-200798	9	0.7

1. spacer 3.5|1054020|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to MN855735 (Bacteriophage sp. isolate 111, complete genome) position: , mismatch: 0, identity: 1.0

ccaacgtaattaaaggctctaccattgcca	CRISPR spacer
ccaacgtaattaaaggctctaccattgcca	Protospacer
******************************

2. spacer 3.8|1054218|30|CP029544|CRT matches to MN855989 (Bacteriophage sp. isolate 357, complete genome) position: , mismatch: 0, identity: 1.0

tgagtctaccagtgataaacctagcgacta	CRISPR spacer
tgagtctaccagtgataaacctagcgacta	Protospacer
******************************

3. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to MN856070 (Myoviridae sp. isolate 211, complete genome) position: , mismatch: 1, identity: 0.967

ctttagaaaatggcgaaattgtctttacga	CRISPR spacer
ctttagagaatggcgaaattgtctttacga	Protospacer
*******.**********************

4. spacer 2.17|358708|30|CP029544|CRT matches to MN855735 (Bacteriophage sp. isolate 111, complete genome) position: , mismatch: 1, identity: 0.967

gccaacggctgcgcccaaagggccgccaaa	CRISPR spacer
gccaacggctgcacccaaagggccgccaaa	Protospacer
************.*****************

5. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to MN856061 (Myoviridae sp. isolate 371, complete genome) position: , mismatch: 2, identity: 0.933

ctttagaaaatggcgaaattgtctttacga	CRISPR spacer
ctttagagaatggcgaaattgtctttacta	Protospacer
*******.******************** *

6. spacer 3.2|1053822|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to MN856008 (Siphoviridae sp. isolate 424, complete genome) position: , mismatch: 2, identity: 0.933

ttcccaacgtggtacttttttcaatggagt	CRISPR spacer
ttcccaacgtggtacttttttccacggagt	Protospacer
********************** *.*****

7. spacer 2.7|358567|39|CP029544|PILER-CR matches to MN856070 (Myoviridae sp. isolate 211, complete genome) position: , mismatch: 3, identity: 0.923

-gattagaacctttagaaaatggcgaaattgtctttacga	CRISPR spacer
cgatt-gaagctttagagaatggcgaaattgtctttacga	Protospacer
 **** *** *******.**********************

8. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to MN855683 (Siphoviridae sp. isolate 326, complete genome) position: , mismatch: 4, identity: 0.867

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
gaataactataatcatcatcattatcagta	Protospacer
**.**************.********. **

9. spacer 3.1|1053756|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to MN856008 (Siphoviridae sp. isolate 424, complete genome) position: , mismatch: 4, identity: 0.867

cgattaagtttgccaacggtggaattactg	CRISPR spacer
cgattaagtttgctaacggtggaataacca	Protospacer
*************.*********** **..

10. spacer 3.7|1054152|30|CP029544|CRISPRCasFinder,CRT matches to MN856015 (Myoviridae sp. isolate 136, complete genome) position: , mismatch: 4, identity: 0.867

aaattcaaaaccagcttaattccaaagctt	CRISPR spacer
aaattcaaaatcaacttaattccaaaacat	Protospacer
**********.**.************.* *

11. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 5, identity: 0.833

ccccgtcgctcgccgctaggca---ggtcaaac	CRISPR spacer
ccccgtcgctcgccgcttggcgcacggtca---	Protospacer
***************** ***.   *****

12. spacer 3.4|1053954|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NC_013373 (Staphylococcus sp. CDC3 plasmid SAP020A, complete sequence) position: , mismatch: 5, identity: 0.833

-atatccttagactgattttcataagtttta	CRISPR spacer
tacat-catagactgatttttatcagtttta	Protospacer
 *.** * ************.** *******

13. spacer 2.7|358567|39|CP029544|PILER-CR matches to MN856061 (Myoviridae sp. isolate 371, complete genome) position: , mismatch: 6, identity: 0.846

gattagaacctttagaaaatggcgaaattgtctttacga	CRISPR spacer
caattgaagctttagagaatggcgaaattgtctttacta	Protospacer
 * * *** *******.******************** *

14. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to MK238400 (CrAssphage ZA, complete genome) position: , mismatch: 6, identity: 0.8

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
ttatcactatcatcatcgtcattatcctta	Protospacer
  .* ***** *************** ***

15. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to NC_041878 (Pectobacterium phage CBB, complete genome) position: , mismatch: 6, identity: 0.8

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
atgtaactataatcatcgtcataataagta	Protospacer
. ******************** ** . **

16. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to MT006214 (CrAssphage LMMB, complete genome) position: , mismatch: 6, identity: 0.8

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
ttatcactatcatcatcgtcattatcctta	Protospacer
  .* ***** *************** ***

17. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to MK415408 (CrAssphage GF1-2_000079F, complete genome) position: , mismatch: 6, identity: 0.8

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
ttatcactatcatcatcgtcattatcctta	Protospacer
  .* ***** *************** ***

18. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ccccgtcgctcgccgctaggcaggtcaaac	CRISPR spacer
ccccttcgctcgccgcttggcagccccagc	Protospacer
**** ************ ***** .* *.*

19. spacer 3.5|1054020|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015111 (Acinetobacter sp. TGL-Y2 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ccaacgtaattaaaggctctaccattgcca	CRISPR spacer
ccaacgtaattaaaggctttattaaagcct	Protospacer
******************.**..*  ***

20. spacer 3.8|1054218|30|CP029544|CRT matches to NC_019517 (Enterobacteria phage vB_EcoM-FV3, complete genome) position: , mismatch: 6, identity: 0.8

tgagtctaccagtgataaacctagcgacta-	CRISPR spacer
tgagtctaccagtgttaaatcta-catcaat	Protospacer
************** ****.*** *. * *

21. spacer 3.8|1054218|30|CP029544|CRT matches to MT740314 (Escherichia phage JEP1, complete genome) position: , mismatch: 6, identity: 0.8

tgagtctaccagtgataaacctagcgacta-	CRISPR spacer
tgagtctaccagtgttaaatcta-catcaat	Protospacer
************** ****.*** *. * *

22. spacer 3.8|1054218|30|CP029544|CRT matches to MK883718 (Escherichia phage vB_EcoM-ECP32, complete genome) position: , mismatch: 6, identity: 0.8

tgagtctaccagtgataaacctagcgacta-	CRISPR spacer
tgagtctaccagtgttaaatcta-catcaat	Protospacer
************** ****.*** *. * *

23. spacer 2.10|358246|30|CP029544|CRISPRCasFinder,CRT matches to MG592506 (Vibrio phage 1.135.O._10N.222.54.B6, partial genome) position: , mismatch: 7, identity: 0.767

tttaccactttagcttccgtaatcgcatta	CRISPR spacer
aggaactctttagcttccttaatcgcatca	Protospacer
   * * *********** *********.*

24. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to NC_001901 (Bacteriophage N15, complete genome) position: , mismatch: 7, identity: 0.767

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
tcgccaagataatcatcggcattatcgtta	Protospacer
  *. *  ********** ***********

25. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to KC821615 (Cellulophaga phage phi12:3, complete genome) position: , mismatch: 7, identity: 0.767

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
tagtaattatcatcatcgtcattagtattg	Protospacer
 *****.*** ************* ..**.

26. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to NC_021791 (Cellulophaga phage phi12:1, complete genome) position: , mismatch: 7, identity: 0.767

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
tagtaattatcatcatcgtcattagtattg	Protospacer
 *****.*** ************* ..**.

27. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to MT909815 (Enterococcus phage iF6, complete genome) position: , mismatch: 7, identity: 0.767

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
aactttttataatcttcgtcatcatcgtta	Protospacer
.* *  .******* *******.*******

28. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 7, identity: 0.767

ctttagaaaatggcgaaattgtctttacga	CRISPR spacer
gttttgaaaatgtcgaaattgtcttgattt	Protospacer
 *** ******* ************ *.

29. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to NC_048015 (Cyanophage S-TIM4, complete genome) position: , mismatch: 7, identity: 0.767

ctttagaaaatggcgaaattgtctttacga--	CRISPR spacer
tactacaaaatggcgaaattgtc--taccacc	Protospacer
. .** *****************  *** *

30. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to MH512890 (Cyanophage S-TIM4) position: , mismatch: 7, identity: 0.767

ctttagaaaatggcgaaattgtctttacga--	CRISPR spacer
tactacaaaatggcgaaattgtc--taccacc	Protospacer
. .** *****************  *** *

31. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to NC_015283 (Prochlorococcus phage P-RSM4, complete genome) position: , mismatch: 7, identity: 0.767

ctttagaaaatggcgaaattgtctttacga--	CRISPR spacer
tactacaaaatggcgaaattgtc--taccacc	Protospacer
. .** *****************  *** *

32. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP022984 (Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence) position: , mismatch: 7, identity: 0.767

----ccccgtcgctcgccgctaggcaggtcaaac	CRISPR spacer
ggggctcc----ctcgccggtaggcaggtcaaaa	Protospacer
    *.**    ******* *************

33. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP022984 (Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence) position: , mismatch: 7, identity: 0.767

----ccccgtcgctcgccgctaggcaggtcaaac	CRISPR spacer
ggggctcc----ctcgccggtaggcaggtcaaaa	Protospacer
    *.**    ******* *************

34. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NC_015218 (Lactobacillus amylovorus plasmid pRKC30SC2, complete sequence) position: , mismatch: 7, identity: 0.767

ccccgtcgctcgccgctaggcaggtcaaac	CRISPR spacer
ttcttccgctcgccgctaggcaggcaaaac	Protospacer
..*. .******************. ****

35. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NC_016035 (Lactobacillus buchneri subsp. silagei CD034 plasmid pCD034-1, complete sequence) position: , mismatch: 7, identity: 0.767

ccccgtcgctcgccgctaggcaggtcaaac	CRISPR spacer
ccccgtcactcgccgttaggcaggaaagca	Protospacer
*******.*******.********  *.

36. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032754 (Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tatcagtttcatttttttaaaatcttctat	Protospacer
 * ..*************.***.******

37. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013151 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-2, complete sequence) position: , mismatch: 7, identity: 0.767

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tatcagtttcatttttttaaaatcttctat	Protospacer
 * ..*************.***.******

38. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040857 (Lactobacillus plantarum strain 202195 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tatcagtttcatttttttaaaatcttctat	Protospacer
 * ..*************.***.******

39. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035115 (Lactobacillus plantarum strain SRCM103295 plasmid unnamed2) position: , mismatch: 7, identity: 0.767

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tatcagtttcatttttttaaaatcttctat	Protospacer
 * ..*************.***.******

40. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN898145 (Lactobacillus oligofermentans DSM 15707 = LMG 22743 isolate LACOL plasmid II, complete sequence) position: , mismatch: 7, identity: 0.767

gaatggtttcatttttttgaaaccttctaa-----	CRISPR spacer
gaatggcttcatttttttgaaa-----gaagaaac	Protospacer
******.***************      **

41. spacer 3.8|1054218|30|CP029544|CRT matches to MK883717 (Eschericha phage vB_EcoM-ECP26, complete genome) position: , mismatch: 7, identity: 0.767

tgagtctaccagtgataaacctagcgacta--	CRISPR spacer
tgagtctaccagtgttaaatcta--catcagt	Protospacer
************** ****.***   *..*

42. spacer 2.12|358378|30|CP029544|CRISPRCasFinder,CRT matches to LR606149 (Rhizobium sp. Q54 genome assembly, plasmid: 6) position: , mismatch: 8, identity: 0.733

tcttcaaatggctctttggcatcaactact	CRISPR spacer
cccgcaagtggcgctttggcatcaactcaa	Protospacer
.*. ***.**** **************

43. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to MN013085 (Klebsiella phage vB_KpnP_NahiliMali, complete genome) position: , mismatch: 8, identity: 0.733

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
ccaccactatcatcatcgtcatcatcgttt	Protospacer
  .. ***** ***********.******

44. spacer 2.13|358444|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP020115 (Nodularia spumigena UHCC 0039 plasmid pUHCC0039a, complete sequence) position: , mismatch: 8, identity: 0.733

gagtaactataatcatcgtcattatcgtta	CRISPR spacer
tagtaccaataatcatcgtcattaaaactg	Protospacer
 **** * ****************  ..*.

45. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to MN693671 (Marine virus AFVG_250M196, complete genome) position: , mismatch: 8, identity: 0.733

ctttagaaaatggcgaaattgtctttacga	CRISPR spacer
acgaggaaaatggcgaaatagtctatacgc	Protospacer
 .  .************** **** ****

46. spacer 2.15|358576|30|CP029544|CRISPRCasFinder,CRT matches to MN693776 (Marine virus AFVG_250M197, complete genome) position: , mismatch: 8, identity: 0.733

ctttagaaaatggcgaaattgtctttacga	CRISPR spacer
acgaggaaaatggcgaaatagtctatacgc	Protospacer
 .  .************** **** ****

47. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP022984 (Bacillus kochii strain BDGP4 plasmid pBkBDGP4A, complete sequence) position: , mismatch: 8, identity: 0.733

ccccgtcgctcgccgctaggcaggtcaaac	CRISPR spacer
ggtgctccctcgccggtaggcaggtcaaaa	Protospacer
  .  ** ******* *************

48. spacer 2.16|358642|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP012899 (Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence) position: , mismatch: 8, identity: 0.733

ccccgtcgctcgccgctaggcaggtcaaac	CRISPR spacer
ggctgtcgctcgccgccaggcagatcaggg	Protospacer
  *.************.******.***..

49. spacer 2.17|358708|30|CP029544|CRT matches to CP032840 (Aeromonas veronii strain FC951 plasmid unnamed) position: , mismatch: 8, identity: 0.733

gccaacggctgcgcccaaagggccgccaaa	CRISPR spacer
atcagcggctgcgcccaaagcgccgcggcg	Protospacer
..**.*************** ***** . .

50. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045196 (Acinetobacter indicus strain TQ23 plasmid p23TQ-37k, complete sequence) position: , mismatch: 8, identity: 0.733

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tttatgctccattttttggaaaccttctaa	Protospacer
     *.*.******** ************

51. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NC_011251 (Borrelia duttonii Ly plasmid pl41, complete sequence) position: , mismatch: 8, identity: 0.733

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tacgtgtttcatttttttgaaaatttcttc	Protospacer
 *   ***************** .****

52. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012534 (Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence) position: , mismatch: 8, identity: 0.733

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
agcagatttcagttttttgaaaacttctag	Protospacer
..  *.***** ********** ******.

53. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NC_011254 (Borrelia duttonii Ly plasmid pl42, complete sequence) position: , mismatch: 8, identity: 0.733

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tacgtgtttcatttttttgaaaatttcttc	Protospacer
 *   ***************** .****

54. spacer 3.7|1054152|30|CP029544|CRISPRCasFinder,CRT matches to NZ_CP023400 (Pseudoalteromonas spongiae strain SAO4-4 plasmid pl, complete sequence) position: , mismatch: 8, identity: 0.733

aaattcaaaaccagcttaattccaaagctt	CRISPR spacer
aaattcaaaacgagcttaaatccgttaatc	Protospacer
*********** ******* ***.  . *.

55. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to MK170447 (Methanosarcina virus MetMV, complete genome) position: , mismatch: 9, identity: 0.7

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
atgatgtttcatttttttgatatcttctgc	Protospacer
. .  *************** *.*****.

56. spacer 3.6|1054086|30|CP029544|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

gaatggtttcatttttttgaaaccttctaa	CRISPR spacer
tgctggtttcattttattgaaaccagcacc	Protospacer
 . ************ ********  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

92587 : 103048

Streptococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN32736.1\|92587_94822_-	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	A0A068F3I8	Mycobacterium_phage	2.4e-84	32.6
AWN32737.1\|95080_95266_-	hypothetical protein	NA	NA	NA	NA
AWN32738.1\|95460_96171_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
AWN32739.1\|96234_97098_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.3e-58	41.0
AWN32740.1\|97113_97878_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.0e-31	35.7
AWN32741.1\|97969_98980_-	lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	3.9e-50	34.3
AWN32742.1\|99306_100134_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.8e-98	63.0
AWN32743.1\|100207_103048_+	NgoFVII family restriction endonuclease	Q9T1H9	Lactobacillus_phage	9.3e-25	26.0

DBSCAN-SWA_2

992407 : 999974

Bacillus_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN33502.1\|992407_992632_-	hypothetical protein	A0A2I6AZV9	Macacine_betaherpesvirus	9.8e-07	44.8
AWN33503.1\|992655_993237_-	hypothetical protein	A0A1B1P773	Bacillus_phage	1.8e-20	38.7
AWN33504.1\|993269_993893_-\|transposase	transposase	A0A1B1P776	Bacillus_phage	1.3e-11	37.6
AWN34288.1\|993883_995725_-\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	5.1e-08	23.8
AWN33505.1\|995738_997025_-\|tRNA	histidine--tRNA ligase	A0A1V0S921	Catovirus	2.6e-27	26.0
AWN33506.1\|997296_997734_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
AWN33507.1\|997733_999974_-	GTP pyrophosphokinase	A0A1X9SH80	Bradyrhizobium_phage	7.3e-09	33.3

DBSCAN-SWA_3

1255694 : 1272591

Lactobacillus_phage(64.71%)

integrase

attL 1247173:1247187|attR 1278807:1278821

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1247173:1247187	attL	NA	NA	NA	NA
AWN33735.1\|1255694_1256894_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.6e-140	66.7
AWN33736.1\|1257679_1257883_-	hypothetical protein	NA	NA	NA	NA
AWN33737.1\|1258081_1258576_-	hypothetical protein	Q6SE85	Lactobacillus_prophage	7.5e-23	40.3
AWN33738.1\|1258610_1259162_-	hypothetical protein	NA	NA	NA	NA
AWN33739.1\|1259202_1259541_-	hypothetical protein	NA	NA	NA	NA
AWN33740.1\|1259861_1260401_-	hypothetical protein	U3PIU0	Lactobacillus_phage	3.9e-17	32.1
AWN33741.1\|1260382_1260865_-	hypothetical protein	NA	NA	NA	NA
AWN33742.1\|1260848_1261187_-	VRR-NUC domain-containing protein	L0P7E5	Lactobacillus_phage	1.3e-39	69.7
AWN33743.1\|1261186_1261372_-	hypothetical protein	NA	NA	NA	NA
AWN33744.1\|1261397_1261583_-	XRE family transcriptional regulator	Q6SE98	Lactobacillus_prophage	5.1e-09	47.5
AWN33745.1\|1261651_1262434_+	hypothetical protein	E9LUL1	Lactobacillus_phage	2.1e-27	36.7
AWN33746.1\|1262420_1262603_-	hypothetical protein	NA	NA	NA	NA
AWN33747.1\|1262925_1264221_-	hypothetical protein	U3PCP1	Lactobacillus_phage	7.0e-113	50.5
AWN33748.1\|1264217_1265009_-	DNA primase	U3PBE3	Lactobacillus_phage	1.7e-85	62.5
AWN33749.1\|1265011_1265203_-	hypothetical protein	NA	NA	NA	NA
AWN33750.1\|1265215_1265785_-	single-stranded DNA-binding protein	A0A0A1ELK1	Lactobacillus_phage	2.0e-16	30.8
AWN33751.1\|1265784_1266516_-	NTP-binding protein	U3PIS9	Lactobacillus_phage	5.6e-67	55.0
AWN33752.1\|1266512_1267898_-	DEAD/DEAH box helicase	U3PFS7	Lactobacillus_phage	1.5e-124	52.0
AWN33753.1\|1267903_1268170_-	hypothetical protein	Q9T1I2	Lactobacillus_phage	2.2e-05	41.7
AWN33754.1\|1268179_1268659_-	hypothetical protein	A0A2P0ZLB3	Lactobacillus_phage	7.7e-25	36.7
AWN33755.1\|1268655_1269006_-	hypothetical protein	NA	NA	NA	NA
AWN33756.1\|1269231_1269507_-	hypothetical protein	NA	NA	NA	NA
AWN33757.1\|1269521_1269737_-	transcriptional regulator	NA	NA	NA	NA
AWN34297.1\|1269995_1270358_+	XRE family transcriptional regulator	A0A1B0Y3N1	Lactobacillus_phage	1.6e-19	44.0
AWN33758.1\|1270507_1270765_+	hypothetical protein	A9D9J3	Lactobacillus_prophage	2.3e-12	40.8
AWN33759.1\|1270828_1271341_+	hypothetical protein	A0A0B5D0D1	Listeria_phage	4.0e-11	36.9
AWN33760.1\|1271469_1272591_+\|integrase	site-specific integrase	Q6SEA7	Lactobacillus_prophage	4.5e-124	56.5
1278807:1278821	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029544

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection