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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029550 Methylobacterium sp. 17SD2-17 chromosome, complete genome 2 crisprs DEDDh,csa3,cas3HD,cas1,cas3 0 7 19 0

Results visualization

1. CP029550
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029550_3 1719633-1720205 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029550_4 1985748-1985907 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 269898-269927 3 0.9
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 297445-297474 3 0.9
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 MK524505 Gordonia phage Dogfish, complete genome 11634-11660 5 0.815
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 NZ_CP013526 Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence 974533-974559 5 0.815
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 NZ_CP020900 Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence 644010-644036 5 0.815
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 MT986025 Gordonia phage GrootJr, complete genome 11192-11218 5 0.815
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 MT889393 Gordonia phage NovumRegina, complete genome 11191-11217 5 0.815
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 MH536824 Gordonia phage NatB6, complete genome 10860-10886 5 0.815
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_017805 Deinococcus gobiensis I-0 plasmid P1, complete sequence 386418-386447 5 0.833
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_009507 Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence 227688-227717 5 0.833
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 NC_008242 Chelativorans sp. BNC1 plasmid 1, complete sequence 195989-196015 6 0.778
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 NZ_CP021449 Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence 1554134-1554160 6 0.778
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 NZ_CP021763 Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence 593147-593173 6 0.778
CP029550_2 2.1|1372778|27|CP029550|CRISPRCasFinder 1372778-1372804 27 NZ_CP021765 Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence 593185-593211 6 0.778
CP029550_3 3.12|1720085|36|CP029550|CRISPRCasFinder 1720085-1720120 36 NZ_AP019656 Vibrio panuliri strain JCM 19500 plasmid pVPan1, complete sequence 34990-35025 6 0.833
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP043960 Streptomyces tendae strain 139 plasmid unnamed1, complete sequence 237531-237560 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP032340 Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence 869925-869954 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP011276 Planctomyces sp. SH-PL62 plasmid pPL62-3, complete sequence 6630-6659 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP032346 Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence 1749179-1749208 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP012915 Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence 1262456-1262485 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP045548 Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence 42733-42762 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP045548 Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence 78046-78075 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 162353-162382 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP007795 Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence 575060-575089 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_LT960615 Hartmannibacter diazotrophicus strain E19T plasmid HDIAp1, complete sequence 929-958 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP054617 Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence 377564-377593 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 361338-361367 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 598549-598578 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 1214521-1214550 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1965387-1965416 6 0.8
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP015867 Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence 527806-527835 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP027237 Actinomyces sp. oral taxon 897 strain F0631 plasmid unnamed1, complete sequence 4206-4235 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP010408 Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence 218382-218411 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP011274 Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence 59294-59323 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_012521 Rhodococcus opacus B4 plasmid pROB02, complete sequence 31138-31167 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP029358 Azospirillum sp. CFH 70021 plasmid unnamed3 370358-370387 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP032342 Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence 180175-180204 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP033321 Azospirillum brasilense strain Cd plasmid p3, complete sequence 614064-614093 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP033315 Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence 23453-23482 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_LR594673 Variovorax sp. PBL-E5 plasmid 3 18417-18446 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_019849 Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence 770772-770801 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_003078 Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence 966934-966963 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 285583-285612 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 840340-840369 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP019586 Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence 935545-935574 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_017326 Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence 756239-756268 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021799 Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence 1033154-1033183 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_017323 Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence 352677-352706 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP009146 Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence 764471-764500 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_018701 Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence 753990-754019 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021828 Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence 537462-537491 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP053711 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence 109246-109275 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021802 Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence 1422188-1422217 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 1108460-1108489 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021831 Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence 1015728-1015757 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021823 Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence 653561-653590 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP030128 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence 295529-295558 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021814 Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence 677862-677891 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021795 Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence 173023-173052 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021810 Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence 1542964-1542993 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021806 Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence 253309-253338 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP021218 Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence 915593-915622 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP026527 Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence 777306-777335 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP019484 Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence 1105937-1105966 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 CP003952 Rhodococcus opacus PD630 plasmid 3, complete sequence 78181-78210 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP019487 Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence 880301-880330 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_020560 Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence 966937-966966 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 MT521993 Gordonia phage RedWattleHog, complete genome 76038-76067 7 0.767
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 MN586040 Gordonia phage Stormageddon, complete genome 76019-76048 7 0.767
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 557218-557249 8 0.75
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 856180-856211 8 0.75
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 591421-591452 8 0.75
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NC_012848 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence 391966-391997 8 0.75
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NZ_CP054032 Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence 324303-324334 8 0.75
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NZ_CP022565 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence 887168-887199 8 0.75
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 592632-592663 8 0.75
CP029550_3 3.2|1719723|32|CP029550|CRT 1719723-1719754 32 NZ_LR594673 Variovorax sp. PBL-E5 plasmid 3 410468-410499 8 0.75
CP029550_3 3.3|1719784|29|CP029550|CRT 1719784-1719812 29 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 1554389-1554417 8 0.724
CP029550_3 3.13|1720146|35|CP029550|CRISPRCasFinder 1720146-1720180 35 MH153804 Rhodococcus phage Jace, complete genome 38032-38066 8 0.771
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP045548 Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence 82462-82491 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP041349 Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence 24901-24930 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP044283 Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence 475711-475740 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 2837073-2837102 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_016037 Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence 7615-7644 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_AP022607 Mycobacterium branderi strain JCM 12687 plasmid pJCM12687 434774-434803 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP020372 Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence 99686-99715 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP046573 Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence 319503-319532 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 474842-474871 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_LR134456 Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence 69808-69837 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 1236937-1236966 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 22492-22521 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1102136-1102165 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 710991-711020 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NZ_AP014687 Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6c, complete sequence 8902-8931 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 CP042595 Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence 255553-255582 8 0.733
CP029550_4 4.2|1985859|30|CP029550|PILER-CR 1985859-1985888 30 NC_016601 Pseudonocardia dioxanivorans CB1190 plasmid pPSED02, complete sequence 2295-2324 8 0.733
CP029550_3 3.2|1719723|32|CP029550|CRT 1719723-1719754 32 MH339998 Uncultured bacterium plasmid pHTP1 clone AA-110, complete sequence 22587-22618 9 0.719
CP029550_3 3.1|1719662|32|CP029550|CRT 1719662-1719693 32 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 154132-154163 11 0.656

1. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 3, identity: 0.9

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gtggacgtcgtcgtcgccctgctggccgta	Protospacer
* *** * **********************

2. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 3, identity: 0.9

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gtggacgtcgtcgtcgccctgctggccgta	Protospacer
* *** * **********************

3. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to MK524505 (Gordonia phage Dogfish, complete genome) position: , mismatch: 5, identity: 0.815

gcggccggtcgtctatcggccgccgca	CRISPR spacer
ccggccggtcgcctaccggccgccggc	Protospacer
 **********.***.*********  

4. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 5, identity: 0.815

gcggccggtcgtctatcggccgccgca	CRISPR spacer
gatgtcggtcgtctatcggccgctgct	Protospacer
*  *.******************.** 

5. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 5, identity: 0.815

gcggccggtcgtctatcggccgccgca	CRISPR spacer
gatgtcggtcgtctatcggccgctgct	Protospacer
*  *.******************.** 

6. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to MT986025 (Gordonia phage GrootJr, complete genome) position: , mismatch: 5, identity: 0.815

gcggccggtcgtctatcggccgccgca	CRISPR spacer
gacgccggtcgtctctcggccgcggcg	Protospacer
*  *********** ******** **.

7. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to MT889393 (Gordonia phage NovumRegina, complete genome) position: , mismatch: 5, identity: 0.815

gcggccggtcgtctatcggccgccgca	CRISPR spacer
gacgccggtcgtctctcggccgcggcg	Protospacer
*  *********** ******** **.

8. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to MH536824 (Gordonia phage NatB6, complete genome) position: , mismatch: 5, identity: 0.815

gcggccggtcgtctatcggccgccgca	CRISPR spacer
gacgccggtcgtctctcggccgcggcg	Protospacer
*  *********** ******** **.

9. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 5, identity: 0.833

gaggaggacgtcgtcgccctgctggccgta--	CRISPR spacer
gaggacgaggtcgtcgccctgct--ccgcagt	Protospacer
***** ** **************  ***.*  

10. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 5, identity: 0.833

gaggaggacgtcgtcgccctgct-ggccgta	CRISPR spacer
gaggaggacgccctcgccctgctcagccgc-	Protospacer
**********.* ********** .****. 

11. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to NC_008242 (Chelativorans sp. BNC1 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.778

gcggccggtcgtctatcggccgccgca	CRISPR spacer
ggcgccggtcgtctgtcggccgccttc	Protospacer
*  ***********.********* . 

12. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 6, identity: 0.778

gcggccggtcgtctatcggccgccgca	CRISPR spacer
cacgccggtcggctatcggccgcccaa	Protospacer
   ******** ************  *

13. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.778

gcggccggtcgtctatcggccgccgca	CRISPR spacer
cacgccggtcggctatcggccgcccaa	Protospacer
   ******** ************  *

14. spacer 2.1|1372778|27|CP029550|CRISPRCasFinder matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.778

gcggccggtcgtctatcggccgccgca	CRISPR spacer
cacgccggtcggctatcggccgcccaa	Protospacer
   ******** ************  *

15. spacer 3.12|1720085|36|CP029550|CRISPRCasFinder matches to NZ_AP019656 (Vibrio panuliri strain JCM 19500 plasmid pVPan1, complete sequence) position: , mismatch: 6, identity: 0.833

accaacggtgcagtcacgggacgctgcactcaggct	CRISPR spacer
cccaacggtgcagtcacaggacgatgcactcactca	Protospacer
 ****************.***** ********  * 

16. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggacgtcctcgccctgctggggccg	Protospacer
************ ************   ..

17. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ctggaggacgacctcgccctgctggccgac	Protospacer
  ******** * ***************  

18. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP011276 (Planctomyces sp. SH-PL62 plasmid pPL62-3, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ttggaggacgtcggcgacctgctggccgag	Protospacer
  *********** ** *********** .

19. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ctggaggacgacctcgccctgctggccgac	Protospacer
  ******** * ***************  

20. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ctggaggacgacctcgccctgctggccgac	Protospacer
  ******** * ***************  

21. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cgggaggacgacgtcgccctgctcgccgcc	Protospacer
 .******** ************ ****. 

22. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gatgaggacgtcggcgccctgctggatggc	Protospacer
** ********** *********** .*  

23. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggccttcgtcgccctgctgccggag	Protospacer
******* * ************** * * .

24. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
caccaggacgtcgtcgccctcctcgccgaa	Protospacer
 *  **************** ** **** *

25. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_LT960615 (Hartmannibacter diazotrophicus strain E19T plasmid HDIAp1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggacggcgtcgcgctgctgaacggg	Protospacer
********** ****** ******. ** .

26. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP054617 (Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggccttcgtcgccctgctgccggag	Protospacer
******* * ************** * * .

27. spacer 4.2|1985859|30|CP029550|PILER-CR matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gtggacaccgccgtcgccctgctggccgtc	Protospacer
* *** . **.****************** 

28. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgct--ggccgta	CRISPR spacer
gaggacgacgtcgtcaccctgctcaagcgg--	Protospacer
***** *********.*******  .** *  

29. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgct--ggccgta	CRISPR spacer
gaggacgacgtcgtcaccctgctcaagcgg--	Protospacer
***** *********.*******  .** *  

30. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggacatcgacgccctgctctccttc	Protospacer
*********.*** *********  ** * 

31. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gctcaggacgacgtcgccctgctgggcgac	Protospacer
*   ****** ************** **  

32. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP027237 (Actinomyces sp. oral taxon 897 strain F0631 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ctggaggacgtggacgccctgctggcctgg	Protospacer
  ********* * *************  .

33. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP010408 (Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cgcgaggacgtcctcgacctgctggccgcc	Protospacer
 . ********* *** ***********. 

34. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP011274 (Planctomyces sp. SH-PL62 plasmid pPL62-1, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gcgctttacgtcgtcgccctgctggccgcg	Protospacer
* *    *********************..

35. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_012521 (Rhodococcus opacus B4 plasmid pROB02, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ggcaaggacgtggtcggcctgctggccgcg	Protospacer
*. .******* **** ***********..

36. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ctgcagaacgtcgtcgccgtgctggccgag	Protospacer
  * **.*********** ********* .

37. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cgacaggatgtcgtcgccctcctggccgaa	Protospacer
 .. ****.*********** ******* *

38. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cgacaggatgtcgtcgccctcctggccgaa	Protospacer
 .. ****.*********** ******* *

39. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cgacaggatgtcgtcgccctcctggccgaa	Protospacer
 .. ****.*********** ******* *

40. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gtcgaggtcgtcgtcgcgctgctggcctgt	Protospacer
*  **** ********* *********   

41. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

42. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

43. spacer 4.2|1985859|30|CP029550|PILER-CR matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ggcatggacctcggcgccctgctggccgga	Protospacer
*. . **** *** ************** *

44. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggacgacgtcgtcgcccagctcctcgcg	Protospacer
***** ************* ***  .**..

45. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

46. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

47. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

48. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

49. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

50. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

51. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

52. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggatgacatcgtcgccctgctctcccgg	Protospacer
***** ***.*************  **  .

53. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

54. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

55. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

56. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

57. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP030128 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gccgcgctcggcgtcgccctgctggccgtg	Protospacer
*  * *  ** ******************.

58. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

59. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

60. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

61. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

62. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

63. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

64. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

65. spacer 4.2|1985859|30|CP029550|PILER-CR matches to CP003952 (Rhodococcus opacus PD630 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaagacgccgtcgccctgctcggcccg	Protospacer
*****.****.************ * * ..

66. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

67. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gaggaggatgtcgtcgccctgttcttcgag	Protospacer
********.************.*  .** .

68. spacer 4.2|1985859|30|CP029550|PILER-CR matches to MT521993 (Gordonia phage RedWattleHog, complete genome) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
catcacgacgtagtcgccgtgctggccgtc	Protospacer
 *  * ***** ****** ********** 

69. spacer 4.2|1985859|30|CP029550|PILER-CR matches to MN586040 (Gordonia phage Stormageddon, complete genome) position: , mismatch: 7, identity: 0.767

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
catcacgacgtagtcgccgtgctggccgtc	Protospacer
 *  * ***** ****** ********** 

70. spacer 3.1|1719662|32|CP029550|CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
tcaggcacgccgcagatggagcttgccgacgc	Protospacer
* .. ** .******** ***** ********

71. spacer 3.1|1719662|32|CP029550|CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
tcaggcacgccgcagatggagcttgccgacgc	Protospacer
* .. ** .******** ***** ********

72. spacer 3.1|1719662|32|CP029550|CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
tcaggcacgccgcagatggagcttgccgacgc	Protospacer
* .. ** .******** ***** ********

73. spacer 3.1|1719662|32|CP029550|CRT matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
tcaggcacgccgcagatggagcttgccgacgc	Protospacer
* .. ** .******** ***** ********

74. spacer 3.1|1719662|32|CP029550|CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
tcaggcacgccgcagatggagcttgccgacgc	Protospacer
* .. ** .******** ***** ********

75. spacer 3.1|1719662|32|CP029550|CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
tcaggcacgccgcagatggagcttgccgacgc	Protospacer
* .. ** .******** ***** ********

76. spacer 3.1|1719662|32|CP029550|CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
tcaggcacgccgcagatggagcttgccgacgc	Protospacer
* .. ** .******** ***** ********

77. spacer 3.2|1719723|32|CP029550|CRT matches to NZ_LR594673 (Variovorax sp. PBL-E5 plasmid 3) position: , mismatch: 8, identity: 0.75

gtccactcgccagccgccacgtcggcgaagtc	CRISPR spacer
gccgcgccgccggccgccgcgtcggcgaaggc	Protospacer
*.*   .****.******.*********** *

78. spacer 3.3|1719784|29|CP029550|CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.724

ggccagatcactcacaaaaacgaaaaggt	CRISPR spacer
tttgtgatcactaacaaaaacgaaaacat	Protospacer
  .  ******* ************* .*

79. spacer 3.13|1720146|35|CP029550|CRISPRCasFinder matches to MH153804 (Rhodococcus phage Jace, complete genome) position: , mismatch: 8, identity: 0.771

gacccggagtgccggcagctcatcaaggcgacgac	CRISPR spacer
ttcccgaagtggcggcagctcatcaagaccagcac	Protospacer
  ****.**** ***************.* *  **

80. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ggtcaggtcgtcgtcgccctgctggacccg	Protospacer
*.  *** ***************** * ..

81. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
caggaggatgtcgtcgcccttctggggacg	Protospacer
 *******.*********** ****  ...

82. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP044283 (Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
tgcaaggacgtcgtcacccagctggccgcg	Protospacer
 . .***********.*** ********..

83. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gccgaggacgtcgtcgccctgcagggacac	Protospacer
*  ******************* **     

84. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
caggaggatgtcgtcgcccttctggggacg	Protospacer
 *******.*********** ****  ...

85. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
tgcaaggacgtcgtcacccagctggccgcg	Protospacer
 . .***********.*** ********..

86. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
agtgaggacgtggtcgtcctgctggccaag	Protospacer
.. ******** ****.**********. .

87. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
tgcaaggacgtcgtcacccagctggccgcg	Protospacer
 . .***********.*** ********..

88. spacer 4.2|1985859|30|CP029550|PILER-CR matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
tgcgagggcgtcgtcgctctgctggcgggt	Protospacer
 . ****.*********.******** *  

89. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gccgccctggtcgtagccctgctggccgta	Protospacer
*  *     ***** ***************

90. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cagccggacgacgtcgccctgctggcgcgg	Protospacer
 **  ***** ***************   .

91. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cagccggacgacgtcgccctgctggcgcgg	Protospacer
 **  ***** ***************   .

92. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gtggaggacgtcctcaccctgctggtgccc	Protospacer
* ********** **.*********.  . 

93. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
gtggaggacgtcctcaccctgctggtgccc	Protospacer
* ********** **.*********.  . 

94. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NZ_AP014687 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6c, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cgcggggtcgtcgtcggcctgctggccgcg	Protospacer
 . *.** ******** ***********..

95. spacer 4.2|1985859|30|CP029550|PILER-CR matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
cccgacctcgtcgtcgccctcctggccgtc	Protospacer
   **   ************ ******** 

96. spacer 4.2|1985859|30|CP029550|PILER-CR matches to NC_016601 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED02, complete sequence) position: , mismatch: 8, identity: 0.733

gaggaggacgtcgtcgccctgctggccgta	CRISPR spacer
ctgctggtcgtcggcgccctgctggccgct	Protospacer
  *  ** ***** **************. 

97. spacer 3.2|1719723|32|CP029550|CRT matches to MH339998 (Uncultured bacterium plasmid pHTP1 clone AA-110, complete sequence) position: , mismatch: 9, identity: 0.719

gtccactcgccagccgccacgtcggcgaagtc	CRISPR spacer
gaacactcgccagcccccacgttggcgttcca	Protospacer
*  ************ ******.****   . 

98. spacer 3.1|1719662|32|CP029550|CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 11, identity: 0.656

tggatcaaaccgcagatcgagctagccgacgc	CRISPR spacer
caagatgtcccgctgatcgagcaagccgacgc	Protospacer
.... ..  **** ******** *********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 638474 : 702875 52 Erythrobacter_phage(33.33%) transposase,protease,integrase attL 636005:636055|attR 699316:699366
DBSCAN-SWA_2 808057 : 869604 60 uncultured_virus(22.22%) tRNA,transposase,integrase attL 802074:802091|attR 856059:856076
DBSCAN-SWA_3 1108393 : 1165252 49 Corynebacterium_phage(16.67%) transposase NA
DBSCAN-SWA_4 1651014 : 1724554 60 Rhizobium_phage(28.57%) transposase,integrase attL 1677209:1677228|attR 1723620:1723639
DBSCAN-SWA_5 1844610 : 1884967 37 Shigella_phage(16.67%) transposase NA
DBSCAN-SWA_6 2060075 : 2092676 33 Pseudomonas_phage(16.67%) transposase,protease NA
DBSCAN-SWA_7 2654669 : 2693467 26 Enterobacteria_phage(22.22%) transposase NA
DBSCAN-SWA_8 2749706 : 2758152 13 Shigella_phage(25.0%) head,protease,tail,capsid NA
DBSCAN-SWA_9 3022119 : 3041735 15 Shigella_phage(100.0%) transposase NA
DBSCAN-SWA_10 3194983 : 3244435 37 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_11 4797937 : 4847635 42 Rhizobium_phage(20.0%) transposase NA
DBSCAN-SWA_12 4851869 : 4914695 51 Acidithiobacillus_phage(30.0%) transposase,integrase attL 4846210:4846269|attR 4907042:4908551
DBSCAN-SWA_13 4996883 : 5041745 45 Rhizobium_phage(20.0%) transposase NA
DBSCAN-SWA_14 5389178 : 5422284 43 Sinorhizobium_phage(23.53%) portal,integrase,head,tail,capsid attL 5384892:5384907|attR 5402506:5402521
DBSCAN-SWA_15 5425436 : 5456416 39 Pseudomonas_phage(15.38%) plate,tail,transposase NA
DBSCAN-SWA_16 5720258 : 5766321 43 EBPR_podovirus(16.67%) transposase,integrase attL 5701858:5701875|attR 5761100:5761117
DBSCAN-SWA_17 5881379 : 5918235 32 Enterobacteria_phage(50.0%) transposase NA
DBSCAN-SWA_18 6102019 : 6216467 99 Indivirus(20.0%) tRNA,transposase,integrase attL 6164529:6164573|attR 6215058:6215102
DBSCAN-SWA_19 6445112 : 6510665 58 Enterobacteria_phage(25.0%) transposase,integrase attL 6443791:6443806|attR 6486662:6486677
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage