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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029552 Methylobacterium sp. 17Sr1-1 chromosome, complete genome 1 crisprs cas3,RT,WYL,csa3,DEDDh 1 4 3 0

Results visualization

1. CP029552
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029552_3 5751870-5752190 Orphan I-E
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029552_3 3.5|5752142|20|CP029552|CRT 5752142-5752161 20 CP029552.1 360133-360152 2 0.9

1. spacer 3.5|5752142|20|CP029552|CRT matches to position: 360133-360152, mismatch: 2, identity: 0.9

ggcggcagagtgacggccgg	CRISPR spacer
ggcggcggagtgacgggcgg	Protospacer
******.********* ***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 416981-417008 2 0.929
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NC_017771 Deinococcus gobiensis I-0 plasmid P3, complete sequence 701-728 6 0.786
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP021817 Sinorhizobium meliloti strain M270 plasmid accessoryC, complete sequence 88128-88155 6 0.786
CP029552_3 3.3|5752020|33|CP029552|CRT 5752020-5752052 33 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 274909-274941 7 0.788
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP018231 Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3 254855-254882 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP023065 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence 640945-640972 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NC_000914 Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence 342326-342353 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP016292 Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence 210895-210922 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NC_010865 Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence 140500-140527 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NC_015592 Sinorhizobium meliloti AK83 plasmid pSINME02, complete sequence 5784-5811 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP023072 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence 63236-63263 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP021213 Sinorhizobium meliloti RU11/001 plasmid pSmeRU11a, complete sequence 1543-1570 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP021214 Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence 49794-49821 7 0.75
CP029552_4 4.1|5998822|28|CP029552|CRISPRCasFinder 5998822-5998849 28 NZ_CP021216 Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence 92901-92928 7 0.75
CP029552_3 3.8|5752022|33|CP029552|PILER-CR 5752022-5752054 33 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 274910-274942 8 0.758
CP029552_3 3.11|5752021|34|CP029552|CRISPRCasFinder 5752021-5752054 34 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 274910-274943 9 0.735

1. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 2, identity: 0.929

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgccccaggcggcgctggcggatttccg	Protospacer
**** ******** **************

2. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NC_017771 (Deinococcus gobiensis I-0 plasmid P3, complete sequence) position: , mismatch: 6, identity: 0.786

tgccgcaggcggctctggcggatttccg	CRISPR spacer
gccagcaggcggcgctggcggagttcca	Protospacer
  * ********* ******** ****.

3. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP021817 (Sinorhizobium meliloti strain M270 plasmid accessoryC, complete sequence) position: , mismatch: 6, identity: 0.786

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatggcat	Protospacer
***.* *****************  *  

4. spacer 3.3|5752020|33|CP029552|CRT matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

gttctgcgccgaccgccgcgtcgcgtgcttccg	CRISPR spacer
ggtcgacgtcgaccgccgcgccgcgtgcttctc	Protospacer
* ** .**.***********.**********. 

5. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP018231 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed3) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

6. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP023065 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631a, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

7. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NC_000914 (Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

8. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP016292 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

9. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NC_010865 (Sinorhizobium meliloti plasmid pSmeSM11b, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

10. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NC_015592 (Sinorhizobium meliloti AK83 plasmid pSINME02, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

11. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP023072 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666a, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

12. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP021213 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11a, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

13. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP021214 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

14. spacer 4.1|5998822|28|CP029552|CRISPRCasFinder matches to NZ_CP021216 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11d, complete sequence) position: , mismatch: 7, identity: 0.75

tgccgcaggcggctctggcggatttccg	CRISPR spacer
tgctggaggcggctctggcggatgggat	Protospacer
***.* *****************     

15. spacer 3.8|5752022|33|CP029552|PILER-CR matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

ttctgcgccgaccgccgcgtcgcgtgcttccga	CRISPR spacer
gtcgacgtcgaccgccgcgccgcgtgcttctcg	Protospacer
 ** .**.***********.**********. .

16. spacer 3.11|5752021|34|CP029552|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ttctgcgccgaccgccgcgtcgcgtgcttccgat	CRISPR spacer
gtcgacgtcgaccgccgcgccgcgtgcttctcga	Protospacer
 ** .**.***********.**********. . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3203718 : 3272341 55 Tupanvirus(22.22%) transposase,tRNA NA
DBSCAN-SWA_2 3670295 : 3682092 10 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_3 6188280 : 6226647 48 Rhodobacter_phage(18.75%) capsid,tail,portal,integrase,tRNA,head,terminase attL 6189173:6189189|attR 6196035:6196051
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage