CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP028383	Escherichia coli strain RM10466 plasmid pRM10466-2, complete sequence	0 crisprs	NA	0	0
CP028381	Escherichia coli strain RM10466 chromosome, complete genome	3 crisprs	DinG,cas3,DEDDh,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	4	11
CP028382	Escherichia coli strain RM10466 plasmid pRM10466-1, complete sequence	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028381_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028381_1

566116-566212

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028381_1

>merge|CP028381|1|566116-566212|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>CP028381|1|1|566116-566212|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
CP028381.1\|AWN67652.1\|560064_561114_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
CP028381.1\|AWN67664.1\|571624_572491_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|236760
CP028381.1\|AWN67655.1\|564376_565192_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
CP028381.1\|AWN67661.1\|569360_570746_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP028381.1\|AWN67663.1\|571410_571623_-\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|183166
CP028381.1\|AWN67649.1\|555415_556717_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
CP028381.1\|AWN67654.1\|563106_564366_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
CP028381.1\|AWN67659.1\|567967_568690_-\|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl\|CDD\|235420
CP028381.1\|AWN67650.1\|558011_558797_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
CP028381.1\|AWN67657.1\|566276_567344_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
CP028381.1\|AWN67656.1\|565188_566082_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
CP028381.1\|AWN67662.1\|570781_571303_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
CP028381.1\|AWN67666.1\|573733_574426_+\|molecular-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
CP028381.1\|AWN67660.1\|568692_569187_-\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
CP028381.1\|AWN67651.1\|558807_560043_-\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|274471
CP028381.1\|AWN67648.1\|553997_555359_+\|cyclic-amidohydrolase	unknown	unknown	gnl\|CDD\|169193
CP028381.1\|AWN67665.1\|572971_573514_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
CP028381.1\|AWN67658.1\|567340_567850_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
CP028381.1\|AWN67647.1\|552483_553938_+\|putative-allantoin-permease	unknown	unknown	gnl\|CDD\|183106
CP028381.1\|AWN67653.1\|561429_563097_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395

Protein	Function_ID	Function_description	E-value
CP028381.1\|AWN67652.1\|560064_561114_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
CP028381.1\|AWN67664.1\|571624_572491_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
CP028381.1\|AWN67655.1\|564376_565192_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.68465e-37
CP028381.1\|AWN67661.1\|569360_570746_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP028381.1\|AWN67663.1\|571410_571623_-\|ribosome-associated-protein	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
CP028381.1\|AWN67649.1\|555415_556717_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
CP028381.1\|AWN67654.1\|563106_564366_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.8369e-131
CP028381.1\|AWN67659.1\|567967_568690_-\|UDP-2,3-diacylglucosamine-hydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.37025e-165
CP028381.1\|AWN67650.1\|558011_558797_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	4.3298e-152
CP028381.1\|AWN67657.1\|566276_567344_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.21739e-179
CP028381.1\|AWN67656.1\|565188_566082_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
CP028381.1\|AWN67662.1\|570781_571303_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.06651e-30
CP028381.1\|AWN67666.1\|573733_574426_+\|molecular-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	5.84958e-149
CP028381.1\|AWN67660.1\|568692_569187_-\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
CP028381.1\|AWN67651.1\|558807_560043_-\|allantoate-amidohydrolase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
CP028381.1\|AWN67648.1\|553997_555359_+\|cyclic-amidohydrolase	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
CP028381.1\|AWN67665.1\|572971_573514_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	2.45834e-91
CP028381.1\|AWN67658.1\|567340_567850_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
CP028381.1\|AWN67647.1\|552483_553938_+\|putative-allantoin-permease	gnl\|CDD\|183106	PRK11375, PRK11375, putative allantoin permease.	0
CP028381.1\|AWN67653.1\|561429_563097_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0

>CP028381.1|AWN67656.1|565188_566082_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEDTLAGEAGTCISL
>CP028381.1|AWN67655.1|564376_565192_+|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLTAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>CP028381.1|AWN67654.1|563106_564366_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>CP028381.1|AWN67653.1|561429_563097_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQSLTQVRRWDSACQKLSDASLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAITPASSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPALRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>CP028381.1|AWN67652.1|560064_561114_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>CP028381.1|AWN67651.1|558807_560043_-|allantoate-amidohydrolase
MITHFRQAIEETLPWLSSFGADPTGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVILSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPHPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>CP028381.1|AWN67650.1|558011_558797_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>CP028381.1|AWN67649.1|555415_556717_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTVLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLGMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>CP028381.1|AWN67648.1|553997_555359_+|cyclic-amidohydrolase
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>CP028381.1|AWN67647.1|552483_553938_+|putative-allantoin-permease
MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLLFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIPFMEPLSRVSWFVGVIVAFAAYALLKKRTTVEKTGEQKTIG
>CP028381.1|AWN67657.1|566276_567344_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLADRSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>CP028381.1|AWN67658.1|567340_567850_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>CP028381.1|AWN67659.1|567967_568690_-|UDP-2,3-diacylglucosamine-hydrolase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>CP028381.1|AWN67660.1|568692_569187_-|peptidyl-prolyl-cis-trans-isomerase
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>CP028381.1|AWN67661.1|569360_570746_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>CP028381.1|AWN67662.1|570781_571303_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMVLMGMLWWRRR
>CP028381.1|AWN67663.1|571410_571623_-|ribosome-associated-protein
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>CP028381.1|AWN67664.1|571624_572491_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>CP028381.1|AWN67665.1|572971_573514_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIKLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>CP028381.1|AWN67666.1|573733_574426_+|molecular-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Crispr_ID: CP028381_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028381_3

3184170-3184626

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP028381_3

>merge|CP028381|3|3184170-3184626|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACCAACGAAATTGAGAGCAAAGGTCGCTACGCAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTCATGAAGCACGCTGGAATTTATATTTGCCCCGGTTTATCCCCGCTGGCGCGGGGAACACGCGCAGCCCGATGCGGTTAGAGATATAGGCCTCCGGTTTATCCCCGCTGGCGCGGGGAACACATCTCCAGCGCCTTTTCGACGCAACGGTGCGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGACCGATTTTATTGATCGCCCGATAGACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGATTCCGCTTTCTCTACCTTCTCTTTTTCCGGTTTATCCCCGCTGGCGCGGGGAACACGGGTTGTGCGCCCTGGTGGGCGAAAACGGTGGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028381|3|1|3184170-3184626|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028381|3|3|3184170-3184626|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028381|3|1|3184170-3184626|CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCTCCAGCGCCTTTTCGACGCAACGGTGCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028381.1\|AWN70205.1\|3180460_3181888_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP028381.1\|AWN72040.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028381.1\|AWN70209.1\|3185012_3185936_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP028381.1\|AWN70213.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028381.1\|AWN70206.1\|3181889_3182798_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP028381.1\|AWN70214.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028381.1\|AWN70202.1\|3178977_3179289_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP028381.1\|AWN70200.1\|3177769_3178249_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP028381.1\|AWN70215.1\|3193477_3193630_-\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP028381.1\|AWN70216.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP028381.1\|AWN70212.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP028381.1\|AWN70207.1\|3183049_3184087_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP028381.1\|AWN70211.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP028381.1\|AWN70208.1\|3184722_3185016_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP028381.1\|AWN70204.1\|3179855_3180461_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP028381.1\|AWN70198.1\|3175981_3176743_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP028381.1\|AWN70199.1\|3176723_3177773_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP028381.1\|AWN70210.1\|3185932_3186583_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP028381.1\|AWN70203.1\|3179482_3179806_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP028381.1\|AWN70201.1\|3178248_3178959_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
CP028381.1\|AWN70205.1\|3180460_3181888_-\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP028381.1\|AWN72040.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028381.1\|AWN70209.1\|3185012_3185936_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.03875e-156
CP028381.1\|AWN70213.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
CP028381.1\|AWN70206.1\|3181889_3182798_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP028381.1\|AWN70214.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
CP028381.1\|AWN70202.1\|3178977_3179289_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP028381.1\|AWN70200.1\|3177769_3178249_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
CP028381.1\|AWN70215.1\|3193477_3193630_-\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP028381.1\|AWN70216.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
CP028381.1\|AWN70212.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
CP028381.1\|AWN70207.1\|3183049_3184087_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP028381.1\|AWN70211.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
CP028381.1\|AWN70208.1\|3184722_3185016_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
CP028381.1\|AWN70204.1\|3179855_3180461_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP028381.1\|AWN70198.1\|3175981_3176743_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP028381.1\|AWN70199.1\|3176723_3177773_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP028381.1\|AWN70210.1\|3185932_3186583_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.48092e-91
CP028381.1\|AWN70203.1\|3179482_3179806_-\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP028381.1\|AWN70201.1\|3178248_3178959_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.02844e-120

>CP028381.1|AWN70207.1|3183049_3184087_+|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTASDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSQGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRFDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP028381.1|AWN70206.1|3181889_3182798_-|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP028381.1|AWN70205.1|3180460_3181888_-|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP028381.1|AWN70204.1|3179855_3180461_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP028381.1|AWN70203.1|3179482_3179806_-|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP028381.1|AWN70202.1|3178977_3179289_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP028381.1|AWN70201.1|3178248_3178959_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQIPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP028381.1|AWN70200.1|3177769_3178249_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP028381.1|AWN70199.1|3176723_3177773_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP028381.1|AWN70198.1|3175981_3176743_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>CP028381.1|AWN70208.1|3184722_3185016_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP028381.1|AWN70209.1|3185012_3185936_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPTIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP028381.1|AWN70210.1|3185932_3186583_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTAQLLPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGRDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP028381.1|AWN70211.1|3186564_3187311_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>CP028381.1|AWN70212.1|3187321_3188377_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP028381.1|AWN70213.1|3188391_3188928_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP028381.1|AWN72040.1|3188924_3190487_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP028381.1|AWN70214.1|3190584_3193284_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>CP028381.1|AWN70215.1|3193477_3193630_-|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP028381.1|AWN70216.1|3193894_3194629_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: CP028381_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028381_4

3200129-3200217

TypeI-E

I-E

Consensus_repeat	Method
GGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

1 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of CP028381_4

>merge|CP028381|4|3200129-3200217|CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACACGTGGCGTCCGTCGTCGTTTAAAGCGTCAATGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028381|4|4|3200129-3200217|CRISPRCasFinder
GGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGCC
GGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028381.1\|AWN72040.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028381.1\|AWN70216.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP028381.1\|AWN70227.1\|3207488_3207824_-\|toxin-MazF	unknown	unknown	gnl\|CDD\|182138
CP028381.1\|AWN70213.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028381.1\|AWN70211.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP028381.1\|AWN70214.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028381.1\|AWN70220.1\|3200556_3201228_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP028381.1\|AWN70229.1\|3208149_3210384_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP028381.1\|AWN70219.1\|3198529_3198895_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP028381.1\|AWN70225.1\|3204761_3206399_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP028381.1\|AWN70212.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP028381.1\|AWN70228.1\|3207823_3208072_-\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP028381.1\|AWN70224.1\|3203375_3204674_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP028381.1\|AWN70215.1\|3193477_3193630_-\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP028381.1\|AWN70218.1\|3196414_3198214_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP028381.1\|AWN70222.1\|3201986_3202922_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
CP028381.1\|AWN70226.1\|3206626_3207418_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP028381.1\|AWN70221.1\|3201400_3202003_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
CP028381.1\|AWN70217.1\|3194702_3196415_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP028381.1\|AWN70223.1\|3202957_3203320_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP028381.1\|AWN72040.1\|3188924_3190487_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028381.1\|AWN70216.1\|3193894_3194629_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
CP028381.1\|AWN70227.1\|3207488_3207824_-\|toxin-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
CP028381.1\|AWN70213.1\|3188391_3188928_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
CP028381.1\|AWN70211.1\|3186564_3187311_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
CP028381.1\|AWN70214.1\|3190584_3193284_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
CP028381.1\|AWN70220.1\|3200556_3201228_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.11521e-156
CP028381.1\|AWN70229.1\|3208149_3210384_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP028381.1\|AWN70219.1\|3198529_3198895_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
CP028381.1\|AWN70225.1\|3204761_3206399_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP028381.1\|AWN70212.1\|3187321_3188377_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
CP028381.1\|AWN70228.1\|3207823_3208072_-\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP028381.1\|AWN70224.1\|3203375_3204674_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP028381.1\|AWN70215.1\|3193477_3193630_-\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP028381.1\|AWN70218.1\|3196414_3198214_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP028381.1\|AWN70222.1\|3201986_3202922_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	4.35408e-81
CP028381.1\|AWN70226.1\|3206626_3207418_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
CP028381.1\|AWN70221.1\|3201400_3202003_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.00218e-77
CP028381.1\|AWN70217.1\|3194702_3196415_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>CP028381.1|AWN70219.1|3198529_3198895_+|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>CP028381.1|AWN70218.1|3196414_3198214_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGELRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>CP028381.1|AWN70217.1|3194702_3196415_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>CP028381.1|AWN70216.1|3193894_3194629_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>CP028381.1|AWN70215.1|3193477_3193630_-|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP028381.1|AWN70214.1|3190584_3193284_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>CP028381.1|AWN72040.1|3188924_3190487_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP028381.1|AWN70213.1|3188391_3188928_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP028381.1|AWN70212.1|3187321_3188377_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP028381.1|AWN70211.1|3186564_3187311_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>CP028381.1|AWN70220.1|3200556_3201228_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGSASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP028381.1|AWN70221.1|3201400_3202003_+|LemA-family-protein
MLRTFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSNHEKDVLEAVTLARSQANRASSDLQQTPGNEQKLQAWQQAQAQVTRTLGQLTIISERYPELKAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNASAH
>CP028381.1|AWN70222.1|3201986_3202922_+|hypothetical-protein
MLVLIRRVNYMKNLILLLVLICSSAFAVQVPVPEFAKYINDLTGTLTREEVSTLTSQIKTLTQKSHAQLIVLVVETTGDETIEQYATRVFERWQPGHKNLDDGILLVVAWQDHTVHIEIGYGLEGILTDAQSGQIIRNSIIPAFKKGDLAVGLQQGIGDIETRLSENDLVNNTSPDHPLPFSGWWALLVWAIVLTFISARGYVKTLGVICFAAIILAFVLPIAGYSGSWGVLATLLCFATPFLVVAIAFTPFGRKVRDSMRSANRPSRYERSNSASRHSSSSSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>CP028381.1|AWN70223.1|3202957_3203320_+|hypothetical-protein
MSKILANHPRLSKFVFGLFGAAGMIWLNKAFQGDELFQLITSLLALDTFVYFCIYSLINPIPEANDFLWDYKVHQRKYSSNISHNDFVSNVRNSRKIVRILILVGITFINVIALLTKLKM
>CP028381.1|AWN70224.1|3203375_3204674_-|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP028381.1|AWN70225.1|3204761_3206399_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP028381.1|AWN70226.1|3206626_3207418_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP028381.1|AWN70227.1|3207488_3207824_-|toxin-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP028381.1|AWN70228.1|3207823_3208072_-|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP028381.1|AWN70229.1|3208149_3210384_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028381_2	2.1\|1195877\|40\|CP028381\|CRISPRCasFinder	1195877-1195916	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP019314	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence	71972-72003	6	0.812
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	66681-66712	7	0.781
CP028381_3	3.4\|3184383\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184383-3184414	32	AP014927	Ralstonia phage RSF1 DNA, complete genome	171005-171036	9	0.719
CP028381_3	3.6\|3184505\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	115828-115859	9	0.719
CP028381_3	3.6\|3184505\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	KY579375	Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome	4523-4554	9	0.719
CP028381_3	3.6\|3184505\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	EU030939	Sulfolobus spindle-shaped virus 5, complete genome	8793-8824	9	0.719
CP028381_3	3.6\|3184505\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184505-3184536	32	JF412294	EBPR podovirus 1, partial sequence	3991-4022	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP020898	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence	46007-46038	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013555	Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence	125777-125808	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	134655-134686	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013587	Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence	68724-68755	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	166140-166171	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	103164-103195	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013544	Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence	36015-36046	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013566	Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence	125777-125808	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	103085-103116	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	103164-103195	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	103163-103194	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013572	Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	103161-103192	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	103161-103192	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	103085-103116	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	CP007643	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence	92301-92332	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	100863-100894	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	97248-97279	9	0.719
CP028381_3	3.7\|3184566\|32\|CP028381\|PILER-CR,CRISPRCasFinder,CRT	3184566-3184597	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1679246-1679277	10	0.688

1. spacer 2.1|1195877|40|CP028381|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

acagcacagcggggggaatttcaagaatgacccgcagcgc	CRISPR spacer
acagcacagcgggggtaatttcaagaatgacccgcagcgc	Protospacer
*************** ************************

2. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 6, identity: 0.812

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gagattgt-cgccctgttgggcgagaacggtgc	Protospacer
 .*.**** ******* *******.*******

3. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gaggacgt-tgccctggtcggcgaagacggtgg	Protospacer
 .** .** .******** ******.*******

4. spacer 3.4|3184383|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to AP014927 (Ralstonia phage RSF1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

atctccagcgccttttcgacgcaacggtgcgc	CRISPR spacer
cacgccagcgcctgttcgacgaaacgggtctg	Protospacer
  * ********* ******* *****  *

5. spacer 3.6|3184505|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaaacgcttcctctacattctctttttc	Protospacer
  ..*   *****.****** ***********

6. spacer 3.6|3184505|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to KY579375 (Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

7. spacer 3.6|3184505|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to EU030939 (Sulfolobus spindle-shaped virus 5, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

8. spacer 3.6|3184505|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to JF412294 (EBPR podovirus 1, partial sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
gccttcgctgctttctcggccttctctttttc	Protospacer
 *   . *.******** .*************

9. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020898 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

10. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

11. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

12. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013587 (Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

13. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
aaggtcaccgccctgatcggcgaaaacggtgc	Protospacer
..* *   *******.* *************

14. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

15. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

16. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013544 (Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

17. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

18. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

19. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

20. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

21. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

22. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

23. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

24. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

25. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to CP007643 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

26. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

27. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

28. spacer 3.7|3184566|32|CP028381|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
ttccctgccgccctggttggcgaatacggtgg	Protospacer
   ..   ********* ****** *******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

198505 : 260693

Emiliania_huxleyi_virus(12.5%)

transposase,plate,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN67328.1\|198505_199858_+\|protease	zinc metalloprotease RseP	NA	NA	NA	NA
AWN67329.1\|199887_202320_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
AWN67330.1\|202441_202927_+	chaperone protein Skp	NA	NA	NA	NA
AWN67331.1\|202930_203956_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
AWN67332.1\|204060_204516_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AWN67333.1\|204519_205308_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AWN67334.1\|205307_206456_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
AWN67335.1\|206452_207049_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
AWN67336.1\|207085_210568_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	2.2e-209	36.9
AWN67337.1\|210580_211540_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
AWN67338.1\|211638_213780_+	lysine decarboxylase LdcC	NA	NA	NA	NA
AWN67339.1\|213836_214226_+	VOC family protein	NA	NA	NA	NA
AWN67340.1\|214290_215589_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AWN71916.1\|215637_215892_-	protein rof	NA	NA	NA	NA
AWN67341.1\|215884_216085_-	hypothetical protein	NA	NA	NA	NA
AWN67342.1\|216250_216796_+	hypothetical protein	NA	NA	NA	NA
AWN67343.1\|216792_217215_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
AWN67344.1\|217228_217939_+	copper homeostasis/adhesion lipoprotein NlpE	NA	NA	NA	NA
AWN67345.1\|217945_218197_-	hypothetical protein	NA	NA	NA	NA
AWN67346.1\|218188_219169_+\|transposase	IS110 family transposase IS621	NA	NA	NA	NA
AWN67347.1\|219182_219377_+	hypothetical protein	NA	NA	NA	NA
AWN67348.1\|220247_221966_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
AWN67349.1\|222077_222785_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
AWN67350.1\|222781_223186_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
AWN67351.1\|223303_224119_-	methionine ABC transporter substrate-binding protein MetQ	NA	NA	NA	NA
AWN67352.1\|224158_224812_-	methionine ABC transporter	NA	NA	NA	NA
AWN67353.1\|224804_225836_-	methionine import ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
AWN67354.1\|226023_226596_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
AWN67355.1\|232355_233159_+	2,5-diketo-D-gluconic acid reductase B	A0A1V0SDE7	Indivirus	2.4e-39	36.2
AWN67356.1\|233155_234070_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWN67357.1\|234310_235111_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
AWN67358.1\|235188_235959_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AWN67359.1\|236006_237365_-	lytic transglycosylase	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
AWN67360.1\|237436_238192_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AWN67361.1\|238225_238948_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AWN67362.1\|238944_239412_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
AWN71917.1\|239476_240208_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	3.4e-40	39.0
AWN67363.1\|240147_240327_-	hypothetical protein	NA	NA	NA	NA
AWN67364.1\|240747_241533_+	aminopeptidase	NA	NA	NA	NA
AWN67365.1\|241669_242149_-	hypothetical protein	NA	NA	NA	NA
AWN67366.1\|242158_243073_-	hypothetical protein	NA	NA	NA	NA
AWN67367.1\|243116_243599_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AWN67368.1\|243622_244975_-	hypothetical protein	NA	NA	NA	NA
AWN67369.1\|244985_248450_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AWN67370.1\|248528_250007_-	type VI secretion system protein TssA	NA	NA	NA	NA
AWN67371.1\|249945_250689_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
AWN67372.1\|250685_253445_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	4.7e-82	28.4
AWN67373.1\|253453_254215_-	hypothetical protein	NA	NA	NA	NA
AWN67374.1\|254219_255551_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AWN67375.1\|255553_256078_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AWN67376.1\|256074_257355_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AWN67377.1\|257379_258462_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AWN67378.1\|258425_260276_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AWN67379.1\|260279_260693_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

569360 : 633858

Enterobacteria_phage(45.28%)

tRNA,capsid,portal,terminase,lysis,tail,integrase,transposase,holin,protease,head

attL 579522:579568|attR 625332:625378

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN67661.1\|569360_570746_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
AWN67662.1\|570781_571303_-	metal-dependent hydrolase	NA	NA	NA	NA
AWN67663.1\|571410_571623_-	ribosome-associated protein	NA	NA	NA	NA
AWN67664.1\|571624_572491_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
AWN67665.1\|572971_573514_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
AWN67666.1\|573733_574426_+	molecular chaperone FimC	NA	NA	NA	NA
AWN67667.1\|574456_577066_+	fimbrial protein	NA	NA	NA	NA
AWN67668.1\|577078_578086_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
AWN67669.1\|578096_578612_+	fimbriae assembly protein	NA	NA	NA	NA
AWN67670.1\|578614_579247_-	DNA-binding response regulator	NA	NA	NA	NA
579522:579568	attL	NA	NA	NA	NA
AWN67671.1\|579581_580745_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
AWN67672.1\|580600_581056_-	DNA-binding protein	U5P4J3	Shigella_phage	3.4e-62	83.3
AWN67673.1\|580971_581277_-	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
AWN67674.1\|581276_581639_-	hypothetical protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
AWN67675.1\|581629_582166_-	HD family hydrolase	U5P0T3	Shigella_phage	9.0e-99	97.8
AWN67676.1\|582293_583118_-	DUF2303 domain-containing protein	U5P439	Shigella_phage	6.0e-150	100.0
AWN67677.1\|583183_583546_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
AWN71927.1\|583971_584532_+	hypothetical protein	NA	NA	NA	NA
AWN67678.1\|584759_585386_-	LexA family transcriptional repressor	K7PM82	Enterobacteria_phage	2.5e-47	48.8
AWN67679.1\|585483_585684_+	cell division protein	NA	NA	NA	NA
AWN71928.1\|585721_586273_+	hypothetical protein	U5P4K1	Shigella_phage	1.7e-100	98.9
AWN67680.1\|586448_586628_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
AWN67681.1\|586617_587559_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.9e-140	93.0
AWN67682.1\|587555_588050_+	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	6.2e-86	97.5
AWN67683.1\|588016_588376_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	1.5e-52	97.2
AWN67684.1\|588372_588762_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
AWN67685.1\|588781_589579_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.6
AWN67686.1\|589586_590576_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.4e-190	97.0
AWN67687.1\|590593_590977_+	antitermination protein	A0A088CD47	Shigella_phage	4.0e-56	84.2
AWN67688.1\|591166_592264_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	4.8e-155	76.3
AWN67689.1\|592852_593068_+\|holin	holin	A5LH82	Enterobacteria_phage	3.4e-33	98.6
AWN67690.1\|593067_593565_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	1.1e-90	98.2
AWN67691.1\|593561_594023_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	3.9e-74	97.4
AWN67692.1\|594054_594348_-	lipoprotein bor	A0A2R2X2B2	Escherichia_phage	5.7e-47	97.9
AWN67693.1\|594638_595049_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-71	98.5
AWN67694.1\|595334_595541_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
AWN67695.1\|595705_595900_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	8.7e-28	100.0
AWN71929.1\|596047_596149_+	hypothetical protein	NA	NA	NA	NA
AWN67696.1\|596288_596834_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	4.0e-94	98.3
AWN67697.1\|596808_598734_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
AWN67698.1\|598730_598937_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AWN67699.1\|598933_600535_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	98.9
AWN67700.1\|600515_601835_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.6e-232	98.2
AWN67701.1\|601844_602177_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.1e-54	98.2
AWN67702.1\|602232_603258_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.4e-188	97.7
AWN67703.1\|603299_603695_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
AWN67704.1\|603706_604060_+\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
AWN67705.1\|604071_604650_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	97.9
AWN67706.1\|604646_605042_+\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
AWN71930.1\|605049_605790_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.0e-128	96.7
AWN67707.1\|605805_606228_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	9.7e-72	99.3
AWN67708.1\|606209_606644_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
AWN67709.1\|606636_609198_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
AWN67710.1\|609194_609524_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
AWN67711.1\|609523_610222_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
AWN67712.1\|610227_610971_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
AWN67713.1\|610868_611540_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.6e-103	99.1
AWN67714.1\|611600_615014_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.2
AWN67715.1\|615084_615684_+	Ail/Lom family protein	A0A291AWV3	Escherichia_phage	4.4e-110	98.5
AWN71931.1\|615748_618709_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	53.7
AWN67716.1\|618708_619284_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
AWN67717.1\|619381_619972_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
AWN67718.1\|620288_620522_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
AWN71932.1\|621069_621696_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AWN67719.1\|621794_622100_+\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	2.8e-12	76.5
AWN67720.1\|622283_623768_-	alpha/beta hydrolase	NA	NA	NA	NA
AWN67721.1\|623954_624908_-\|protease	outer membrane protease	NA	NA	NA	NA
AWN67722.1\|625311_625428_-	hypothetical protein	NA	NA	NA	NA
625332:625378	attR	NA	NA	NA	NA
AWN67723.1\|625421_626183_-	porin thermoregulatory protein EnvY	NA	NA	NA	NA
AWN67724.1\|626239_626452_+	hypothetical protein	NA	NA	NA	NA
AWN67725.1\|626365_627256_-	hypothetical protein	NA	NA	NA	NA
AWN67726.1\|627256_630229_-	phage receptor	NA	NA	NA	NA
AWN67727.1\|630215_632453_-	glycosyl transferase family protein	NA	NA	NA	NA
AWN67728.1\|632721_633858_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

903905 : 1008314

110

Salmonella_phage(66.67%)

tRNA,capsid,portal,transposase,tail,integrase,plate,protease,head

attL 935535:935556|attR 968803:968824

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN67979.1\|903905_904886_+\|transposase	IS110 family transposase IS621	NA	NA	NA	NA
AWN67980.1\|905146_906412_-	DUF1479 domain-containing protein	NA	NA	NA	NA
AWN67981.1\|906563_907379_-	HAD family hydrolase	NA	NA	NA	NA
AWN67982.1\|907524_909957_-	formate C-acetyltransferase/glycerol dehydratase family glycyl radical enzyme	A0A076YHZ7	Citrobacter_phage	6.1e-09	43.5
AWN67983.1\|909962_910862_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA
AWN67984.1\|910992_911655_+	fructose-6-phosphate aldolase	C7BV14	Synechococcus_phage	1.6e-25	32.7
AWN67985.1\|911833_912583_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
AWN67986.1\|912582_913818_-	molybdopterin molybdotransferase	NA	NA	NA	NA
AWN67987.1\|914021_914987_+	beta-aspartyl-peptidase	NA	NA	NA	NA
AWN67988.1\|916864_918403_+	glutathione-binding protein GsiB	NA	NA	NA	NA
AWN67989.1\|918420_919341_+	glutathione ABC transporter permease	NA	NA	NA	NA
AWN67990.1\|919343_920255_+	glutathione ABC transporter permease	NA	NA	NA	NA
AWN71940.1\|920432_922781_+	CHASE9 and EAL domain-containing protein	NA	NA	NA	NA
AWN67991.1\|922788_924117_+	GGDEF domain-containing protein	NA	NA	NA	NA
AWN67992.1\|924163_925489_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
AWN67993.1\|925701_926085_+	biofilm regulator BssR	NA	NA	NA	NA
AWN67994.1\|926195_927311_+	PQQ-dependent sugar dehydrogenase	NA	NA	NA	NA
AWN67995.1\|927307_927934_-	glutathione S-transferase	NA	NA	NA	NA
AWN71941.1\|928179_929382_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	8.2e-100	48.0
AWN67996.1\|929428_930187_-	DNA-binding transcriptional repressor DeoR	NA	NA	NA	NA
AWN67997.1\|930244_930841_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
AWN67998.1\|931125_932358_+	multidrug transporter MdfA	NA	NA	NA	NA
AWN67999.1\|932398_932683_-	hypothetical protein	NA	NA	NA	NA
AWN68000.1\|932768_933584_-	HAD family hydrolase	NA	NA	NA	NA
AWN68001.1\|933583_934792_-	MFS transporter	NA	NA	NA	NA
AWN68002.1\|934875_935412_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
935535:935556	attL	NA	NA	NA	NA
AWN68003.1\|935724_936099_-	hypothetical protein	NA	NA	NA	NA
AWN68004.1\|936174_937194_-\|integrase	integrase	A0A0M4S6G4	Salmonella_phage	3.4e-102	55.6
AWN68005.1\|937273_937870_-	DUF4276 domain-containing protein	NA	NA	NA	NA
AWN68006.1\|937873_939007_-	chromosome segregation protein SMC	NA	NA	NA	NA
AWN68007.1\|939008_939575_-	phage repressor protein	F1BUN8	Cronobacter_phage	1.6e-32	39.2
AWN68008.1\|939701_939923_+	regulator	NA	NA	NA	NA
AWN68009.1\|939955_940465_+	hypothetical protein	E5G6L3	Salmonella_phage	1.7e-86	98.2
AWN71942.1\|940472_940673_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
AWN68010.1\|940636_940978_+	hypothetical protein	E5G6L5	Salmonella_phage	1.3e-55	98.2
AWN68011.1\|941045_941279_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	1.1e-32	97.4
AWN68012.1\|941278_941506_+	hypothetical protein	E5G6L7	Salmonella_phage	3.5e-36	98.7
AWN68013.1\|941502_942357_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.9e-147	90.1
AWN71943.1\|942362_943184_+	hypothetical protein	A0A0M4RCP6	Salmonella_phage	1.1e-122	75.7
AWN68014.1\|943183_945556_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.1
AWN68015.1\|945708_945897_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
AWN68016.1\|945835_946141_+	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
AWN68017.1\|946300_946726_-	hypothetical protein	NA	NA	NA	NA
AWN68018.1\|947372_947642_+	hypothetical protein	D2IZW1	Enterococcus_phage	7.6e-14	42.4
AWN68019.1\|947696_948743_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	9.8e-174	89.2
AWN68020.1\|948742_950509_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
AWN68021.1\|950651_951485_+\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	2.4e-122	90.3
AWN68022.1\|951501_952560_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.2e-180	92.8
AWN68023.1\|952563_953214_+	hypothetical protein	E5G6M7	Salmonella_phage	1.5e-111	95.8
AWN68024.1\|953309_953774_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.6
AWN68025.1\|953773_953977_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	5.7e-30	89.6
AWN68026.1\|953980_954196_+	hypothetical protein	E5G6N0	Salmonella_phage	3.1e-26	78.9
AWN68027.1\|954176_954692_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-89	92.4
AWN68028.1\|954688_955117_+	hypothetical protein	E5G6N2	Salmonella_phage	2.8e-58	88.7
AWN68029.1\|955046_955250_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.0e-23	76.1
AWN68030.1\|955212_955644_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.9e-70	91.6
AWN68031.1\|955636_956083_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.6e-56	81.5
AWN68032.1\|956024_956831_-	hypothetical protein	NA	NA	NA	NA
AWN68033.1\|956934_957513_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	7.2e-94	86.5
AWN68034.1\|957509_957869_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.2e-52	87.4
AWN68035.1\|957855_958764_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	9.2e-144	90.7
AWN68036.1\|958756_959362_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.5
AWN68037.1\|959358_961089_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.0e-79	62.8
AWN68038.1\|961088_961523_+\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	5.5e-22	40.6
AWN68039.1\|961655_962828_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	1.9e-202	89.2
AWN68040.1\|962837_963353_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.4e-88	94.2
AWN68041.1\|963407_963710_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.6e-39	88.9
AWN68042.1\|963724_963844_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AWN68043.1\|963836_966914_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	5.7e-312	61.3
AWN68044.1\|966910_967396_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
AWN68045.1\|967392_968493_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	2.2e-176	88.0
AWN68046.1\|968583_968802_+	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AWN68047.1\|969037_970723_-	transporter	NA	NA	NA	NA
968803:968824	attR	NA	NA	NA	NA
AWN68048.1\|970992_971370_+	hypothetical protein	NA	NA	NA	NA
AWN68049.1\|971399_971657_-	glutaredoxin	A0A2I7SAE2	Vibrio_phage	8.6e-23	61.9
AWN68050.1\|971816_972104_+	hypothetical protein	NA	NA	NA	NA
AWN68051.1\|972087_972810_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA
AWN68052.1\|972870_973773_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
AWN68053.1\|973860_974337_+	YbjN domain-containing protein	NA	NA	NA	NA
AWN68054.1\|974688_975801_+	putrescine-binding periplasmic protein	NA	NA	NA	NA
AWN68055.1\|975895_977029_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-30	34.4
AWN68056.1\|977038_977992_+	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA
AWN68057.1\|977988_978834_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
AWN68058.1\|978893_979382_+	DUF2593 domain-containing protein	NA	NA	NA	NA
AWN68059.1\|979422_980550_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
AWN68060.1\|980724_981456_-	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
AWN68061.1\|981747_982416_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
AWN68062.1\|982415_983132_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
AWN68063.1\|983138_983870_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
AWN68064.1\|983887_984616_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
AWN68065.1\|984833_985349_-	lipoprotein	NA	NA	NA	NA
AWN68066.1\|985474_985798_+	hypothetical protein	NA	NA	NA	NA
AWN68067.1\|985794_986625_+	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
AWN71944.1\|986621_987635_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AWN68068.1\|987733_989164_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AWN68069.1\|989174_990176_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
AWN68070.1\|990212_991931_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.0e-31	24.1
AWN68071.1\|992063_993032_-	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AWN68072.1\|993043_994696_-	hydroxylamine reductase	NA	NA	NA	NA
AWN68073.1\|994839_995739_-	transporter	NA	NA	NA	NA
AWN68074.1\|996233_996929_-	aquaporin	NA	NA	NA	NA
AWN68075.1\|997354_999013_+	ATP-dependent endonuclease	NA	NA	NA	NA
AWN68076.1\|999009_1000002_-	DUF535 domain-containing protein	NA	NA	NA	NA
AWN68077.1\|1000116_1001232_+	MacA family efflux pump subunit	NA	NA	NA	NA
AWN68078.1\|1001228_1003175_+	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
AWN68079.1\|1003247_1003472_-	cold-shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
AWN68080.1\|1003794_1004115_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
AWN68081.1\|1004145_1006422_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
AWN68082.1\|1007106_1007325_-	translation initiation factor IF-1	NA	NA	NA	NA
AWN68083.1\|1007609_1008314_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA

DBSCAN-SWA_4

1109965 : 1164915

Escherichia_phage(38.6%)

capsid,portal,terminase,lysis,tail,integrase,holin,protease,head

attL 1110830:1110889|attR 1160181:1160242

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN68163.1\|1109965_1110625_-	BAX inhibitor protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.0e-48	55.3
1110830:1110889	attL	NA	NA	NA	NA
AWN68164.1\|1111032_1112052_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	2.6e-86	50.3
AWN68165.1\|1112020_1112272_-	DUF4224 domain-containing protein	NA	NA	NA	NA
AWN68166.1\|1112338_1114741_-	exonuclease	V5UQJ3	Shigella_phage	3.7e-176	58.1
AWN68167.1\|1114833_1115022_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AWN68168.1\|1115018_1115207_-	cell division inhibitor	NA	NA	NA	NA
AWN68169.1\|1115235_1115571_+	hypothetical protein	NA	NA	NA	NA
AWN71948.1\|1116062_1116278_-	hypothetical protein	I6PDF6	Cronobacter_phage	5.3e-10	84.2
AWN68170.1\|1116433_1116586_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
AWN68171.1\|1116897_1117374_-	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
AWN68172.1\|1117498_1117822_+	transcriptional regulator	A0A0R6PH31	Moraxella_phage	1.4e-09	43.5
AWN68173.1\|1117805_1118231_+	Rha family transcriptional regulator	NA	NA	NA	NA
AWN68174.1\|1118241_1118442_-	hypothetical protein	NA	NA	NA	NA
AWN68175.1\|1119122_1119785_+	replication protein	A0A0U2JGJ0	Escherichia_phage	4.4e-79	90.2
AWN68176.1\|1119818_1120535_+	hypothetical protein	A0A0U2SAW4	Escherichia_phage	1.1e-72	63.0
AWN71949.1\|1120567_1120849_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	7.2e-31	74.2
AWN68177.1\|1120845_1121151_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.4e-50	94.1
AWN68178.1\|1121137_1121740_+	hypothetical protein	A0A2R2Z315	Escherichia_phage	5.3e-39	49.5
AWN68179.1\|1121837_1122263_+	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	1.2e-16	85.1
AWN71950.1\|1122492_1122780_+	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	4.0e-53	96.8
AWN68180.1\|1122776_1123121_+	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	3.3e-54	93.0
AWN68181.1\|1123354_1123567_+	type I toxin-antitoxin system hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	2.8e-27	97.1
AWN68182.1\|1123735_1124008_+	hypothetical protein	I6PCV7	Cronobacter_phage	2.1e-11	50.8
AWN68183.1\|1124009_1125059_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.6e-115	58.2
AWN68184.1\|1125076_1125457_+	antitermination protein Q	S5M7R9	Escherichia_phage	4.9e-67	100.0
AWN68185.1\|1125672_1125870_+	TrmB family transcriptional regulator	S5MQK8	Escherichia_phage	1.8e-28	98.5
AWN68186.1\|1126020_1127079_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	2.3e-207	99.1
AWN68187.1\|1127461_1128421_+	Shiga toxin Stx2 subunit A	Q776Q3	Enterobacteria_phage	2.1e-175	99.7
AWN68188.1\|1128432_1128702_+	Shiga toxin Stx2 subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
AWN68189.1\|1128999_1129323_-	anti-adapter protein IraM	Q20GJ2	Phage_258-320	6.5e-60	98.1
AWN68190.1\|1129566_1131504_+	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	0.0e+00	94.8
AWN68191.1\|1131654_1131834_+	DUF1378 domain-containing protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
AWN68192.1\|1131874_1132120_+	DUF826 domain-containing protein	A0A088CE63	Shigella_phage	3.2e-19	98.8
AWN68193.1\|1132197_1132413_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
AWN68194.1\|1132416_1133208_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	5.7e-33	85.5
AWN68195.1\|1133719_1134253_+	lysozyme	Q6H9V6	Enterobacteria_phage	1.4e-99	95.5
AWN68196.1\|1134376_1134592_+	hypothetical protein	NA	NA	NA	NA
AWN71951.1\|1134740_1135208_+\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	4.3e-73	93.5
AWN71952.1\|1135237_1135417_+	hypothetical protein	Q9T1L1	Enterobacteria_phage	1.5e-10	76.9
AWN68197.1\|1135359_1135611_+	hypothetical protein	H6WZK4	Escherichia_phage	2.7e-29	94.2
AWN68198.1\|1135546_1135873_+	hypothetical protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
AWN68199.1\|1136004_1136205_-	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
AWN68200.1\|1136246_1136612_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.6e-62	96.7
AWN68201.1\|1136901_1137465_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
AWN68202.1\|1137461_1139123_+\|terminase	terminase large subunit	Q6H9U9	Enterobacteria_phage	0.0e+00	99.5
AWN68203.1\|1139186_1141124_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.5
AWN71953.1\|1141168_1141390_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
AWN68204.1\|1141335_1143921_+\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	96.9
AWN68205.1\|1143917_1144244_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
AWN68206.1\|1144253_1144604_+\|head,tail	head-tail adaptor protein	A0A0P0ZB28	Stx2-converting_phage	6.0e-59	99.1
AWN68207.1\|1144600_1145047_+	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	2.0e-75	99.3
AWN68208.1\|1145043_1145388_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
AWN68209.1\|1145454_1146171_+\|tail	phage tail protein	A0A0P0ZDV1	Stx2-converting_phage	2.3e-126	99.2
AWN68210.1\|1146185_1146560_+\|tail	phage tail protein	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
AWN68211.1\|1146583_1146865_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.0e-45	98.9
AWN68212.1\|1146912_1150155_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	87.7
AWN68213.1\|1150147_1150489_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.9e-52	82.3
AWN68214.1\|1150488_1151187_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
AWN68215.1\|1151197_1151941_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	3.8e-148	97.6
AWN68216.1\|1151838_1152519_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	7.7e-111	92.0
AWN68217.1\|1152758_1156445_+\|tail	phage tail protein	S5MW25	Escherichia_phage	0.0e+00	88.0
AWN68218.1\|1156643_1156784_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
AWN68219.1\|1156928_1158641_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.2e-67	51.0
AWN68220.1\|1158650_1158863_+\|tail	phage tail protein	NA	NA	NA	NA
AWN71954.1\|1158874_1159549_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	9.6e-114	90.1
AWN68221.1\|1159712_1160042_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AWN68222.1\|1160696_1161815_+	hydrogenase-1 small chain	NA	NA	NA	NA
1160181:1160242	attR	NA	NA	NA	NA
AWN68223.1\|1161811_1163605_+	hydrogenase 2 large subunit	NA	NA	NA	NA
AWN68224.1\|1163623_1164331_+	Ni/Fe-hydrogenase B-type cytochrome subunit	NA	NA	NA	NA
AWN68225.1\|1164327_1164915_+\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA

DBSCAN-SWA_5

1312056 : 1428837

162

Shigella_phage(28.57%)

tRNA,capsid,portal,terminase,lysis,tail,integrase,plate,holin,protease,head

attL 1330621:1330642|attR 1392386:1392407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN68374.1\|1312056_1313175_-\|integrase	integrase	Q77Z04	Phage_21	1.5e-82	43.6
AWN68375.1\|1313143_1313413_-	excisionase	NA	NA	NA	NA
AWN68376.1\|1313474_1315919_-	exonuclease	V5UQJ3	Shigella_phage	1.4e-170	56.7
AWN68377.1\|1316011_1316200_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AWN68378.1\|1316196_1316385_-	cell division inhibitor	NA	NA	NA	NA
AWN68379.1\|1316413_1316764_+	hypothetical protein	NA	NA	NA	NA
AWN68380.1\|1316681_1316924_+	hypothetical protein	NA	NA	NA	NA
AWN68381.1\|1316871_1317429_+	hypothetical protein	NA	NA	NA	NA
AWN68382.1\|1317542_1317695_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
AWN68383.1\|1317972_1318260_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AWN68384.1\|1318260_1318452_-	stability determinant	NA	NA	NA	NA
AWN68385.1\|1318420_1318840_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	1.2e-08	56.2
AWN68386.1\|1318900_1319293_-	hypothetical protein	NA	NA	NA	NA
AWN68387.1\|1319374_1319656_+	hypothetical protein	NA	NA	NA	NA
AWN68388.1\|1319659_1320085_+	Rha family transcriptional regulator	NA	NA	NA	NA
AWN68389.1\|1320095_1320296_-	hypothetical protein	NA	NA	NA	NA
AWN68390.1\|1320976_1321639_+	replication protein	A0A0U2JGJ0	Escherichia_phage	4.4e-79	90.2
AWN68391.1\|1321672_1322389_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	8.7e-73	62.1
AWN68392.1\|1322385_1322703_+	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.4e-35	75.0
AWN68393.1\|1322699_1322981_+	hypothetical protein	A0A0U2SAZ1	Escherichia_phage	1.3e-45	92.5
AWN68394.1\|1323152_1323335_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	3.8e-25	93.3
AWN68395.1\|1323500_1324016_+	hypothetical protein	A0A076GCN9	Escherichia_phage	2.5e-37	77.6
AWN68396.1\|1324249_1324462_+	type I toxin-antitoxin system hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.4e-16	67.1
AWN68397.1\|1324628_1324901_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.9e-12	50.8
AWN68398.1\|1324902_1325952_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	7.7e-110	54.6
AWN68399.1\|1325964_1326339_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.4e-35	62.7
AWN68400.1\|1326335_1327157_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.9e-80	59.7
AWN68401.1\|1327383_1327581_+	TrmB family transcriptional regulator	A0A0P0ZDH6	Stx2-converting_phage	8.0e-29	100.0
AWN68402.1\|1327731_1328790_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	9.5e-201	96.3
AWN68403.1\|1329172_1330132_+	Shiga toxin Stx2 subunit A	Q5TJL6	Enterobacteria_phage	6.2e-175	99.4
AWN68404.1\|1330143_1330413_+	Shiga toxin Stx2 subunit B	Q6DWN4	Enterobacteria_phage	1.2e-43	100.0
1330621:1330642	attL	NA	NA	NA	NA
AWN68405.1\|1330914_1332852_+	sialate O-acetylesterase	S5MDQ7	Escherichia_phage	0.0e+00	93.5
AWN68406.1\|1332989_1333169_+	DUF1378 domain-containing protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
AWN68407.1\|1333209_1333455_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
AWN68408.1\|1333532_1333748_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
AWN68409.1\|1333751_1334543_+	DUF1327 domain-containing protein	Q08JA0	Stx2-converting_phage	4.0e-34	86.7
AWN68410.1\|1335054_1335588_+	lysozyme	Q6H9V6	Enterobacteria_phage	6.9e-99	94.9
AWN68411.1\|1335711_1335927_+	hypothetical protein	NA	NA	NA	NA
AWN71961.1\|1336075_1336543_+\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	6.1e-67	86.5
AWN68412.1\|1336566_1336791_+	hypothetical protein	NA	NA	NA	NA
AWN68413.1\|1337236_1337785_+\|terminase	terminase small subunit	K7PJS9	Enterobacteria_phage	4.6e-58	60.0
AWN71962.1\|1337777_1339685_+\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	4.3e-260	66.8
AWN68414.1\|1339668_1339875_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
AWN68415.1\|1339871_1341464_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	5.8e-186	61.3
AWN68416.1\|1341453_1342959_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.5e-98	53.4
AWN68417.1\|1342995_1343343_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	4.4e-22	57.0
AWN68418.1\|1343400_1344429_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	62.2
AWN68419.1\|1344480_1344864_+	DNA-packaging protein FI	NA	NA	NA	NA
AWN68420.1\|1344856_1345210_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	2.8e-40	69.2
AWN68421.1\|1345225_1345801_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-50	58.3
AWN68422.1\|1345797_1346193_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	2.2e-57	80.9
AWN68423.1\|1346200_1346950_+\|tail	phage tail protein	S5M7Q5	Escherichia_phage	1.6e-130	94.4
AWN68424.1\|1346965_1347397_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
AWN68425.1\|1347423_1347837_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	2.3e-41	82.8
AWN68426.1\|1347817_1350397_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	81.4
AWN68427.1\|1350393_1350723_+\|tail	phage tail protein	S5MW28	Escherichia_phage	1.2e-58	99.1
AWN68428.1\|1350722_1351421_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
AWN68429.1\|1351431_1352175_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	8.3e-143	94.7
AWN68430.1\|1352072_1352717_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.5e-89	74.3
AWN68431.1\|1353627_1357314_+	DUF1983 domain-containing protein	S5MW25	Escherichia_phage	0.0e+00	88.3
AWN68432.1\|1357512_1357653_+	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
AWN68433.1\|1357797_1359501_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	3.3e-70	51.9
AWN68434.1\|1359510_1359723_+\|tail	phage tail protein	NA	NA	NA	NA
AWN71963.1\|1359734_1360409_+	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	3.3e-114	90.1
AWN68435.1\|1360572_1360902_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AWN68436.1\|1361067_1361931_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
AWN68437.1\|1361914_1363051_-	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
AWN71964.1\|1363029_1363245_-	hypothetical protein	NA	NA	NA	NA
AWN68438.1\|1363300_1364530_+	peptidase T	NA	NA	NA	NA
AWN68439.1\|1364675_1365797_-	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA
AWN68440.1\|1366045_1367275_+	DUF4102 domain-containing protein	A0A2H4JB45	uncultured_Caudovirales_phage	1.5e-133	55.9
AWN68441.1\|1367649_1367838_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	5.9e-13	64.2
AWN68442.1\|1368086_1368290_-	hypothetical protein	NA	NA	NA	NA
AWN68443.1\|1368347_1368527_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.5e-10	58.6
AWN68444.1\|1368747_1368975_-	hypothetical protein	NA	NA	NA	NA
AWN68445.1\|1369032_1369212_-	hypothetical protein	NA	NA	NA	NA
AWN68446.1\|1369404_1369602_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AWN68447.1\|1369594_1369807_+	hypothetical protein	NA	NA	NA	NA
AWN68448.1\|1369796_1370036_+	hypothetical protein	NA	NA	NA	NA
AWN68449.1\|1370028_1370262_+	hypothetical protein	NA	NA	NA	NA
AWN68450.1\|1370494_1370794_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AWN68451.1\|1370790_1372200_+	DNA primase	A0A2H4JFA4	uncultured_Caudovirales_phage	3.4e-113	58.9
AWN71965.1\|1372402_1372654_+	hypothetical protein	NA	NA	NA	NA
AWN68452.1\|1372650_1373073_+	single-stranded DNA-binding protein	NA	NA	NA	NA
AWN68453.1\|1373197_1373437_-	hypothetical protein	NA	NA	NA	NA
AWN68454.1\|1373490_1373697_+	hypothetical protein	NA	NA	NA	NA
AWN68455.1\|1373696_1374752_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.1e-70	43.4
AWN68456.1\|1374763_1375099_+\|head	head decoration protein	NA	NA	NA	NA
AWN68457.1\|1375111_1375525_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
AWN68458.1\|1375771_1376356_+\|terminase	terminase small subunit	K7PJS9	Enterobacteria_phage	3.2e-57	57.2
AWN68459.1\|1376335_1376560_-	hypothetical protein	NA	NA	NA	NA
AWN68460.1\|1376611_1376893_+	hypothetical protein	NA	NA	NA	NA
AWN68461.1\|1377742_1379203_-	sensor protein PhoQ	NA	NA	NA	NA
AWN68462.1\|1379202_1379874_-	two-component system response regulator PhoP	NA	NA	NA	NA
AWN68463.1\|1380041_1381412_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
AWN71966.1\|1381415_1382057_-	lysogenization protein HflD	NA	NA	NA	NA
AWN68464.1\|1382092_1383199_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AWN68465.1\|1383252_1383714_-	NUDIX hydrolase	NA	NA	NA	NA
AWN68466.1\|1383723_1384377_-	23S rRNA pseudouridine synthase E	NA	NA	NA	NA
AWN68467.1\|1384548_1385799_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
AWN68468.1\|1386205_1388533_-	AAA family ATPase	NA	NA	NA	NA
AWN68469.1\|1388851_1389979_-\|integrase	integrase	O21925	Phage_21	2.7e-121	60.5
AWN68470.1\|1389959_1390205_-	excisionase	NA	NA	NA	NA
AWN68471.1\|1390259_1390796_-	HD family hydrolase	U5P0T3	Shigella_phage	3.9e-94	94.3
AWN68472.1\|1390924_1391749_-	DUF2303 domain-containing protein	U5P439	Shigella_phage	6.0e-150	100.0
AWN68473.1\|1391814_1392177_-	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
AWN68474.1\|1392249_1392474_+	hypothetical protein	A0A291AWX8	Escherichia_phage	9.8e-15	67.7
1392386:1392407	attR	NA	NA	NA	NA
AWN68475.1\|1392614_1392860_+	hypothetical protein	NA	NA	NA	NA
AWN68476.1\|1392777_1393053_-	hypothetical protein	Q8SBF7	Shigella_phage	7.0e-47	97.8
AWN68477.1\|1393061_1393265_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	8.9e-15	68.3
AWN68478.1\|1393541_1394234_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	2.3e-126	99.6
AWN68479.1\|1394331_1394592_+	XRE family transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
AWN68480.1\|1394584_1395136_+	hypothetical protein	S5FXP0	Shigella_phage	2.9e-100	98.4
AWN68481.1\|1395311_1395491_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
AWN68482.1\|1395480_1396422_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	8.6e-153	99.4
AWN68483.1\|1396418_1396913_+	PerC family transcriptional regulator	S5MW49	Escherichia_phage	6.2e-86	96.9
AWN68484.1\|1396912_1397566_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	2.5e-127	99.1
AWN68485.1\|1397562_1397889_+	LexA family transcriptional regulator	A5LH73	Enterobacteria_phage	1.6e-53	100.0
AWN68486.1\|1397885_1398275_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
AWN68487.1\|1398294_1399137_+	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	6.3e-139	91.5
AWN68488.1\|1399144_1400134_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.6e-194	99.4
AWN68489.1\|1400151_1400499_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	8.0e-56	85.0
AWN68490.1\|1400512_1401604_-	hypothetical protein	Q332C0	Clostridium_botulinum_C_phage	5.3e-05	35.4
AWN68491.1\|1401583_1401715_+	hypothetical protein	NA	NA	NA	NA
AWN68492.1\|1402196_1402913_-	hypothetical protein	NA	NA	NA	NA
AWN68493.1\|1403288_1403615_+\|holin	phage holin, lambda family	S5FM86	Shigella_phage	3.4e-56	98.1
AWN68494.1\|1403618_1404095_+	lysozyme	S5FV07	Shigella_phage	8.3e-88	98.7
AWN68495.1\|1404078_1404471_+	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	6.5e-54	89.2
AWN68496.1\|1404923_1405274_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	6.8e-63	95.7
AWN68497.1\|1405391_1405895_+\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	1.0e-88	100.0
AWN68498.1\|1405891_1407625_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.6
AWN68499.1\|1407636_1407819_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
AWN68500.1\|1407818_1409060_+\|portal	phage portal protein	U5P411	Shigella_phage	2.6e-242	99.5
AWN68501.1\|1409001_1409688_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-125	99.6
AWN68502.1\|1409702_1410908_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.2e-223	99.5
AWN68503.1\|1410957_1411158_+	hypothetical protein	S5FNU1	Shigella_phage	3.8e-26	97.0
AWN68504.1\|1411160_1411484_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
AWN68505.1\|1411480_1411891_+\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
AWN68506.1\|1411865_1412372_+	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
AWN68507.1\|1412368_1412929_+	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
AWN68508.1\|1412937_1413108_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
AWN68509.1\|1413091_1414588_+\|tail	phage tail protein	M1FN90	Enterobacteria_phage	1.2e-273	99.2
AWN68510.1\|1414587_1414944_+\|tail	phage tail protein	U5P076	Shigella_phage	5.3e-63	100.0
AWN68511.1\|1414943_1415213_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	7.8e-43	98.9
AWN68512.1\|1415179_1415368_+	hypothetical protein	NA	NA	NA	NA
AWN68513.1\|1415354_1417190_+\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	1.5e-307	99.3
AWN68514.1\|1417208_1418579_+	DNA circularization protein	S5FUX4	Shigella_phage	3.9e-255	99.1
AWN68515.1\|1418575_1419655_+\|plate	baseplate protein	U5P0H6	Shigella_phage	4.5e-206	99.4
AWN68516.1\|1419654_1420203_+\|plate	phage baseplate assembly protein V	Q8SBG6	Shigella_phage	1.5e-96	99.5
AWN68517.1\|1420199_1420628_+\|tail	phage tail protein	U5P0R9	Shigella_phage	2.3e-81	100.0
AWN68518.1\|1420614_1421673_+\|plate	phage baseplate protein	Q8SBG4	Shigella_phage	8.1e-200	98.6
AWN68519.1\|1421663_1422248_+	DUF2313 domain-containing protein	O22003	Shigella_phage	2.4e-113	99.5
AWN68520.1\|1422251_1422899_+	hypothetical protein	U5P0I1	Shigella_phage	8.4e-67	64.4
AWN68521.1\|1422901_1423333_+\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	4.3e-43	74.6
AWN68522.1\|1423304_1423907_-\|tail	tail fiber assembly protein	A0A0F7LDQ5	Escherichia_phage	8.9e-95	88.4
AWN68523.1\|1423906_1424437_-\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	4.4e-98	96.6
AWN68524.1\|1424466_1425021_+	DNA-invertase	A0A1S6L009	Salmonella_phage	4.4e-88	88.9
AWN68525.1\|1425127_1425961_+	5-methylcytosine-specific restriction enzyme A	NA	NA	NA	NA
AWN68526.1\|1426194_1426359_+	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-24	100.0
AWN68527.1\|1426461_1426785_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	8.0e-42	65.4
AWN68528.1\|1427480_1427885_-	DUF1398 domain-containing protein	NA	NA	NA	NA
AWN68529.1\|1428105_1428837_-	helix-turn-helix-type transcriptional regulator	Q9EYF2	Enterobacteria_phage	2.7e-53	50.5

DBSCAN-SWA_6

1527274 : 1596106

Escherichia_phage(29.63%)

capsid,terminase,lysis,tail,integrase,holin,protease,head

attL 1527107:1527134|attR 1582301:1582328

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1527107:1527134	attL	NA	NA	NA	NA
AWN68626.1\|1527274_1528405_-\|integrase	integrase	O21940	Phage_21	4.0e-104	51.4
AWN68627.1\|1528382_1528631_-	excisionase	NA	NA	NA	NA
AWN68628.1\|1528695_1531167_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.3e-54	56.0
AWN68629.1\|1531262_1531451_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AWN68630.1\|1531447_1531636_-	cell division inhibitor	NA	NA	NA	NA
AWN68631.1\|1531544_1531736_+	hypothetical protein	NA	NA	NA	NA
AWN71976.1\|1532184_1532487_+	hypothetical protein	NA	NA	NA	NA
AWN71975.1\|1532410_1532779_-	hypothetical protein	NA	NA	NA	NA
AWN68632.1\|1532790_1532943_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	5.1e-07	53.2
AWN68633.1\|1533132_1533591_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	6.2e-24	45.4
AWN68634.1\|1533617_1533845_+	transcriptional regulator	NA	NA	NA	NA
AWN68635.1\|1533828_1534350_+	hypothetical protein	NA	NA	NA	NA
AWN68636.1\|1534330_1535296_+	hypothetical protein	U5P0A0	Shigella_phage	5.0e-55	61.2
AWN68637.1\|1535302_1536043_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	4.7e-114	83.1
AWN68638.1\|1536072_1536834_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	8.4e-74	64.0
AWN68639.1\|1536893_1537088_+	hypothetical protein	NA	NA	NA	NA
AWN68640.1\|1537429_1537981_+	hypothetical protein	A0A0N7C203	Escherichia_phage	5.5e-43	53.3
AWN68641.1\|1537977_1538151_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	3.1e-08	80.6
AWN68642.1\|1538195_1538408_+	type I toxin-antitoxin system hok family toxin	A0A0U2QV81	Escherichia_phage	5.6e-28	94.3
AWN68643.1\|1538510_1538828_-	transcriptional regulator	NA	NA	NA	NA
AWN68644.1\|1539416_1539644_+	hypothetical protein	NA	NA	NA	NA
AWN68645.1\|1539697_1539967_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.2e-11	52.5
AWN68646.1\|1539968_1541018_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	54.3
AWN68647.1\|1541030_1541393_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	61.9
AWN68648.1\|1541385_1542051_+	antiterminator	I6PDF8	Cronobacter_phage	1.6e-60	52.0
AWN68649.1\|1542304_1543018_+	hypothetical protein	NA	NA	NA	NA
AWN68650.1\|1543191_1543389_+	TrmB family transcriptional regulator	S5MQK8	Escherichia_phage	6.8e-28	96.9
AWN68651.1\|1543539_1544598_+	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	4.4e-206	98.6
AWN68652.1\|1545078_1545507_+	cell envelope integrity protein TolA	NA	NA	NA	NA
AWN68653.1\|1546203_1546929_+	AraC family transcriptional regulator	NA	NA	NA	NA
AWN68654.1\|1547018_1547297_+	hypothetical protein	NA	NA	NA	NA
AWN68655.1\|1548786_1550751_+	9-O-acetyl-N-acetylneuraminic acid deacetylase	A0A0P0ZBH7	Stx2-converting_phage	6.5e-296	78.8
AWN68656.1\|1550885_1551065_+	DUF1378 domain-containing protein	A0A2R2Z345	Escherichia_phage	5.4e-24	93.2
AWN68657.1\|1551105_1551351_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
AWN68658.1\|1551428_1551644_+\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
AWN71977.1\|1551647_1552316_+	hypothetical protein	Q08JA0	Stx2-converting_phage	6.0e-60	76.7
AWN68659.1\|1552295_1552616_-	hypothetical protein	NA	NA	NA	NA
AWN68660.1\|1552741_1553275_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	7.4e-101	97.2
AWN68661.1\|1553398_1553614_+	hypothetical protein	NA	NA	NA	NA
AWN71978.1\|1553762_1554230_+\|lysis	lysis protein	A0A0H4IT10	Shigella_phage	7.9e-67	87.1
AWN68662.1\|1554410_1554956_+	Rha family transcriptional regulator	A0A0P0ZFJ1	Escherichia_phage	7.4e-64	68.6
AWN68663.1\|1554983_1555184_+	hypothetical protein	Q9T1L1	Enterobacteria_phage	1.1e-09	76.9
AWN68664.1\|1555105_1555357_+	hypothetical protein	H6WZK4	Escherichia_phage	2.2e-31	98.6
AWN68665.1\|1555292_1555619_+	hypothetical protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
AWN68666.1\|1555750_1555951_-	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
AWN68667.1\|1555992_1556358_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.0e-61	95.9
AWN68668.1\|1556326_1556464_+	DNase	NA	NA	NA	NA
AWN71979.1\|1556646_1557210_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
AWN68669.1\|1557206_1558868_+\|terminase	terminase large subunit	A0A0P0ZEI4	Stx2-converting_phage	0.0e+00	99.6
AWN68670.1\|1558931_1560869_+\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.7
AWN71980.1\|1560913_1561135_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
AWN68671.1\|1563499_1563826_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
AWN68672.1\|1563835_1564186_+\|head,tail	head-tail adaptor protein	A0A0P0ZB28	Stx2-converting_phage	6.0e-59	99.1
AWN68673.1\|1564182_1564629_+	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
AWN68674.1\|1564625_1564970_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	4.2e-57	99.1
AWN68675.1\|1565036_1565753_+\|tail	phage tail protein	A0A0P0ZDV1	Stx2-converting_phage	8.9e-126	98.7
AWN68676.1\|1565767_1566142_+\|tail	phage tail protein	A0A0P0ZE84	Stx2-converting_phage	7.8e-65	99.2
AWN68677.1\|1566165_1566447_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.0e-45	98.9
AWN68678.1\|1566494_1569737_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	87.7
AWN68679.1\|1569729_1570071_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.6e-51	82.1
AWN71981.1\|1570278_1571433_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-138	66.7
AWN68680.1\|1571643_1572342_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	2.1e-132	98.7
AWN68681.1\|1572352_1573096_+\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.1e-142	94.7
AWN68682.1\|1572993_1573674_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	5.0e-110	91.6
AWN68683.1\|1574584_1578280_+\|tail	phage tail protein	Q6H9T2	Enterobacteria_phage	0.0e+00	84.2
AWN68684.1\|1578348_1578972_+	hypothetical protein	A0A1U8QHD6	Enterobacteria_phage	9.0e-66	59.9
AWN68685.1\|1579121_1580126_+\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.3e-53	97.3
AWN68686.1\|1580194_1580866_+\|tail	phage tail protein	S5MBX6	Escherichia_phage	3.3e-106	83.9
AWN68687.1\|1580913_1581177_-	hypothetical protein	NA	NA	NA	NA
AWN68688.1\|1582478_1582985_-	hypothetical protein	NA	NA	NA	NA
1582301:1582328	attR	NA	NA	NA	NA
AWN68689.1\|1583030_1583531_-	YciE/YciF family protein	NA	NA	NA	NA
AWN68690.1\|1583616_1583796_-	hypothetical protein	NA	NA	NA	NA
AWN68691.1\|1584176_1584983_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
AWN68692.1\|1584982_1586176_-	tryptophan synthase subunit beta	NA	NA	NA	NA
AWN71982.1\|1586187_1587546_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.0e-37	41.2
AWN68693.1\|1587549_1589145_-	bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
AWN68694.1\|1589144_1590707_-	anthranilate synthase component I	NA	NA	NA	NA
AWN71983.1\|1590798_1590843_-	trp operon leader peptide	NA	NA	NA	NA
AWN68695.1\|1590980_1591862_+	phosphatase	NA	NA	NA	NA
AWN68696.1\|1591858_1592479_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AWN68697.1\|1592579_1593452_+	23S rRNA pseudouridylate synthase B	NA	NA	NA	NA
AWN68698.1\|1593491_1594082_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
AWN68699.1\|1594078_1594837_-	NAD(P)-dependent oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	1.5e-06	25.0
AWN68700.1\|1595056_1596106_+\|protease	protease	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_7

1877653 : 1940162

Escherichia_phage(50.85%)

portal,terminase,lysis,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN68946.1\|1877653_1878325_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	3.2e-109	86.1
AWN68947.1\|1878393_1879662_-\|tail	phage tail protein	S5MDN9	Escherichia_phage	1.9e-54	98.2
AWN68948.1\|1879805_1879946_-	Hok/Gef family protein	S5M7Q0	Escherichia_phage	2.9e-17	95.7
AWN68949.1\|1880144_1883831_-\|tail	phage tail protein	S5MW25	Escherichia_phage	0.0e+00	88.1
AWN68950.1\|1884070_1884751_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	5.9e-111	92.0
AWN68951.1\|1884648_1885392_-\|tail	phage tail protein	S5MQI8	Escherichia_phage	4.6e-141	93.9
AWN68952.1\|1885402_1886101_-\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	1.4e-131	98.3
AWN68953.1\|1886100_1886430_-\|tail	phage tail protein	S5MW28	Escherichia_phage	5.6e-59	100.0
AWN68954.1\|1886426_1889072_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	93.2
AWN68955.1\|1889115_1889424_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	3.0e-54	99.0
AWN68956.1\|1889450_1889873_-\|tail	phage minor tail protein G	S5MQJ3	Escherichia_phage	5.1e-73	100.0
AWN68957.1\|1889889_1890639_-\|tail	phage tail protein	S5M7Q5	Escherichia_phage	5.3e-137	98.8
AWN68958.1\|1890646_1891045_-\|tail	phage tail protein	S5MW30	Escherichia_phage	2.7e-71	100.0
AWN68959.1\|1891054_1891681_-\|tail	phage tail protein	S5MBY4	Escherichia_phage	7.8e-102	100.0
AWN68960.1\|1891683_1891965_-	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
AWN68961.1\|1891957_1892284_-	DUF2190 domain-containing protein	Q9EYD5	Enterobacteria_phage	4.0e-49	99.1
AWN71991.1\|1892370_1894326_-	peptidase S14	S5M7Q8	Escherichia_phage	0.0e+00	98.8
AWN68962.1\|1894339_1895842_-\|portal	phage portal protein	Q8VNN6	Enterobacteria_phage	5.4e-290	99.8
AWN68963.1\|1895841_1896078_-	hypothetical protein	S5MBY8	Escherichia_phage	4.5e-34	100.0
AWN68964.1\|1897546_1897828_-	hypothetical protein	NA	NA	NA	NA
AWN68965.1\|1898085_1899975_-	peptidase	Q8VNN5	Enterobacteria_phage	1.6e-182	51.4
AWN68966.1\|1899971_1900166_-	hypothetical protein	NA	NA	NA	NA
AWN68967.1\|1900260_1900446_-	hypothetical protein	NA	NA	NA	NA
AWN68968.1\|1900946_1902701_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.9e-90	39.6
AWN68969.1\|1902697_1902997_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AWN68970.1\|1903002_1903236_-	hypothetical protein	NA	NA	NA	NA
AWN68971.1\|1903237_1903459_-	hypothetical protein	NA	NA	NA	NA
AWN68972.1\|1903431_1903674_-	hypothetical protein	NA	NA	NA	NA
AWN68973.1\|1903663_1903894_-	hypothetical protein	A0A1W6JPD9	Morganella_phage	4.5e-07	49.1
AWN68974.1\|1903890_1904085_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AWN68975.1\|1904283_1904589_+	hypothetical protein	NA	NA	NA	NA
AWN68976.1\|1904841_1905186_-	hypothetical protein	NA	NA	NA	NA
AWN68977.1\|1905266_1905848_-	antirepressor protein	A0A1W6JPH8	Morganella_phage	3.4e-51	61.3
AWN68978.1\|1905907_1906132_-	hypothetical protein	NA	NA	NA	NA
AWN68979.1\|1906124_1907363_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	6.6e-60	35.1
AWN68980.1\|1907524_1908532_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	5.3e-201	99.7
AWN68981.1\|1908528_1909005_-	DUF1441 domain-containing protein	Q9EYD0	Enterobacteria_phage	1.3e-80	96.8
AWN68982.1\|1909457_1909925_-\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	7.7e-78	100.0
AWN68983.1\|1910223_1910757_-	lysozyme	G9L6J6	Escherichia_phage	1.1e-99	95.5
AWN71992.1\|1911268_1911754_-	hypothetical protein	NA	NA	NA	NA
AWN68984.1\|1911757_1911973_-\|holin	holin	G9L6J5	Escherichia_phage	9.0e-34	100.0
AWN68985.1\|1912050_1912296_-	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	7.4e-16	98.8
AWN68986.1\|1912336_1912516_-	DUF1378 domain-containing protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
AWN68987.1\|1912666_1914613_-	DUF1737 domain-containing protein	S5MDQ7	Escherichia_phage	0.0e+00	97.8
AWN68988.1\|1914683_1914869_+	hypothetical protein	Q8VNP0	Enterobacteria_phage	2.8e-15	92.9
AWN68989.1\|1915125_1915395_-	Shiga toxin Stx2 subunit B	Q5TJL5	Enterobacteria_phage	2.1e-43	100.0
AWN68990.1\|1915406_1916366_-	Shiga toxin Stx2 subunit A	Q6DWN9	Enterobacteria_phage	1.6e-175	100.0
AWN68991.1\|1916851_1917673_-	antitermination protein	K7PKS8	Enterobacteria_phage	1.2e-86	57.2
AWN68992.1\|1917669_1918044_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	4.7e-38	66.4
AWN68993.1\|1918056_1919106_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.5e-108	54.9
AWN68994.1\|1919107_1919380_-	hypothetical protein	I6PCV7	Cronobacter_phage	7.2e-12	48.4
AWN68995.1\|1919515_1919773_+	type II toxin-antitoxin system ParD family antitoxin	A0A0N7C055	Escherichia_phage	1.5e-30	86.7
AWN68996.1\|1919778_1920078_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2R2Z2Y1	Escherichia_phage	3.9e-51	99.0
AWN68997.1\|1920282_1920678_-	hypothetical protein	A0A193GYM6	Enterobacter_phage	2.5e-37	61.2
AWN68998.1\|1920667_1920886_-	hypothetical protein	H6WZG0	Escherichia_phage	1.2e-06	70.3
AWN68999.1\|1921015_1921327_-	hypothetical protein	A0A222YY67	Escherichia_phage	6.5e-49	79.6
AWN69000.1\|1921323_1921515_-	hypothetical protein	A0A291AXE7	Shigella_phage	1.4e-06	42.1
AWN69001.1\|1921507_1921807_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	4.8e-49	94.9
AWN71993.1\|1921803_1922085_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	5.7e-28	66.7
AWN69002.1\|1922089_1922524_-	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	2.0e-35	60.9
AWN69003.1\|1922539_1923265_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.0e-77	64.4
AWN69004.1\|1923298_1923961_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.2e-79	90.8
AWN69005.1\|1924641_1924842_+	hypothetical protein	NA	NA	NA	NA
AWN69006.1\|1924852_1925278_-	Rha family transcriptional regulator	NA	NA	NA	NA
AWN69007.1\|1925274_1925502_-	cell division protein	NA	NA	NA	NA
AWN69008.1\|1925597_1926245_+	helix-turn-helix domain-containing protein	A0A1P8DTH0	Proteus_phage	6.1e-09	25.9
AWN69009.1\|1926573_1926975_+	hypothetical protein	I6PDF6	Cronobacter_phage	6.5e-09	81.6
AWN69010.1\|1927796_1927985_+	cell division inhibitor	NA	NA	NA	NA
AWN69011.1\|1927981_1928170_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AWN69012.1\|1928265_1930737_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	59.3
AWN69013.1\|1930807_1931059_+	DNA-binding protein	S4TND0	Salmonella_phage	2.9e-15	50.0
AWN69014.1\|1931094_1932369_+	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	2.8e-154	61.7
AWN69015.1\|1932397_1932505_-	transporter	NA	NA	NA	NA
AWN69016.1\|1932562_1933582_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	1.6e-16	25.9
AWN69017.1\|1933593_1934808_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AWN69018.1\|1934788_1934977_-	hypothetical protein	NA	NA	NA	NA
AWN69019.1\|1935013_1935340_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AWN69020.1\|1935474_1935816_+	DUF1283 domain-containing protein	NA	NA	NA	NA
AWN69021.1\|1935850_1936411_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
AWN71994.1\|1936413_1937124_-	YnfC family lipoprotein	NA	NA	NA	NA
AWN69022.1\|1937231_1937537_+	DUF1161 domain-containing protein	NA	NA	NA	NA
AWN69023.1\|1937735_1940162_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0

DBSCAN-SWA_8

2446924 : 2483399

Escherichia_phage(54.55%)

capsid,portal,terminase,lysis,tail,plate,integrase,holin,protease,head

attL 2451982:2452009|attR 2481583:2481610

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN69514.1\|2446924_2448328_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.0e-32	29.0
AWN69515.1\|2448324_2449047_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.4e-30	33.2
AWN69516.1\|2449237_2449570_+	DUF1508 domain-containing protein	NA	NA	NA	NA
AWN69517.1\|2449778_2450075_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AWN69518.1\|2450076_2450373_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AWN69519.1\|2450475_2451837_+\|protease	protease	Q6DW11	Phage_TP	1.1e-217	100.0
2451982:2452009	attL	NA	NA	NA	NA
AWN69520.1\|2452109_2452364_-	transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	6.1e-45	100.0
AWN69521.1\|2452409_2453573_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	5.4e-205	99.5
AWN69522.1\|2453572_2454052_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.9e-84	99.4
AWN69523.1\|2454066_2456514_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	95.6
AWN72020.1\|2456506_2456626_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
AWN69524.1\|2456658_2456934_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AWN69525.1\|2456990_2457509_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
AWN69526.1\|2457521_2458712_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	4.8e-225	99.7
AWN69527.1\|2458835_2459306_-\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	1.2e-22	42.8
AWN69528.1\|2459272_2461003_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	1.2e-83	64.0
AWN69529.1\|2460999_2461611_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	3.8e-117	99.5
AWN69530.1\|2461603_2462512_-\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	7.5e-162	99.7
AWN69531.1\|2462516_2462864_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
AWN69532.1\|2462860_2463496_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	4.2e-111	98.6
AWN69533.1\|2463562_2464015_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	6.3e-77	100.0
AWN69534.1\|2464007_2464475_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	9.7e-81	97.4
AWN69535.1\|2464437_2464611_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
AWN69536.1\|2464582_2465008_-\|lysis	LysB family phage lysis regulatory protein	A0A0F7L9Y0	Escherichia_phage	8.0e-66	95.7
AWN69537.1\|2464995_2465421_-	protein lysA	A0A0F7LBP4	Escherichia_phage	8.6e-60	96.5
AWN69538.1\|2465435_2465933_-	lysozyme	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
AWN69539.1\|2465932_2466214_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AWN69540.1\|2466217_2466421_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
AWN69541.1\|2466420_2466930_-\|head	head completion/stabilization protein	Q858W4	Yersinia_virus	3.0e-91	100.0
AWN69542.1\|2467029_2467767_-\|terminase	terminase	Q94MJ2	Enterobacteria_phage	1.2e-128	98.4
AWN69543.1\|2467770_2468844_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	1.9e-201	99.4
AWN69544.1\|2468902_2469757_-\|capsid	capsid scaffolding protein	Q94MH0	Enterobacteria_phage	1.7e-131	97.5
AWN69545.1\|2469930_2471703_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.5
AWN69546.1\|2471702_2472737_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	4.2e-201	99.7
AWN69547.1\|2473089_2474244_-	DNA cytosine methyltransferase	Q83VT0	Escherichia_phage	3.2e-210	99.4
AWN69548.1\|2474264_2474534_+	XRE family transcriptional regulator	Q83VS9	Escherichia_phage	3.6e-40	100.0
AWN69549.1\|2474511_2475567_+	restriction endonuclease, SacI family	Q83VS8	Escherichia_phage	2.2e-197	100.0
AWN69550.1\|2475660_2477931_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.2
AWN69551.1\|2477920_2478196_-	hypothetical protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
AWN69552.1\|2478192_2478417_-	hypothetical protein	S4TRY6	Salmonella_phage	2.5e-34	97.3
AWN69553.1\|2478416_2478719_-	hypothetical protein	U5N0U2	Enterobacteria_phage	5.0e-46	98.0
AWN69554.1\|2478718_2478943_-	DUF2732 domain-containing protein	S4TP68	Salmonella_phage	4.7e-33	100.0
AWN69555.1\|2479006_2479507_-	replication protein B	M1SV55	Escherichia_phage	2.6e-92	100.0
AWN69556.1\|2479684_2479960_-	hypothetical protein	Q1JS62	Enterobacteria_phage	1.3e-48	100.0
AWN69557.1\|2480074_2480374_+	XRE family transcriptional regulator	Q1JS63	Enterobacteria_phage	2.5e-50	100.0
AWN69558.1\|2480489_2481503_+\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	1.4e-193	99.1
AWN69559.1\|2481630_2481780_-	hypothetical protein	NA	NA	NA	NA
2481583:2481610	attR	NA	NA	NA	NA
AWN69560.1\|2481767_2482085_-	hypothetical protein	NA	NA	NA	NA
AWN69561.1\|2482499_2483399_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0

DBSCAN-SWA_9

2521424 : 2530865

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN69592.1\|2521424_2522561_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
AWN69593.1\|2522557_2524558_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
AWN69594.1\|2524681_2525143_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AWN69595.1\|2525183_2525654_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AWN69596.1\|2525700_2526420_-	DNA-binding response regulator	NA	NA	NA	NA
AWN69597.1\|2526416_2528102_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AWN69598.1\|2528323_2529055_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AWN69599.1\|2529114_2529222_+	hypothetical protein	NA	NA	NA	NA
AWN69600.1\|2529202_2529934_-	osmoprotectant uptake system permease	NA	NA	NA	NA
AWN69601.1\|2529938_2530865_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8

DBSCAN-SWA_10

2992568 : 3085279

102

Salmonella_phage(69.09%)

tRNA,capsid,portal,transposase,lysis,tail,plate,integrase,head

attL 3036355:3036401|attR 3068909:3068955

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN70018.1\|2992568_2993306_-\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
AWN70019.1\|2993437_2994772_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
AWN70020.1\|2994980_2995862_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWN70021.1\|2995964_2996552_+	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
AWN70022.1\|2996607_2996991_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
AWN70023.1\|2997295_2997985_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
AWN70024.1\|2998032_2999070_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AWN70025.1\|2999059_2999263_-	hypothetical protein	NA	NA	NA	NA
AWN70026.1\|2999276_2999696_+	thiol disulfide reductase thioredoxin	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
AWN72029.1\|2999764_3000463_+	DTW domain-containing protein	NA	NA	NA	NA
AWN70027.1\|3000494_3003155_+	protein lysine acetyltransferase	NA	NA	NA	NA
AWN70028.1\|3003268_3004624_+	phosphatidylserine synthase	NA	NA	NA	NA
AWN70029.1\|3004669_3004993_+	lipoprotein	NA	NA	NA	NA
AWN70030.1\|3004989_3006288_-	MFS transporter	Q6JIH2	Burkholderia_virus	2.2e-45	32.2
AWN70031.1\|3006269_3006383_-	alpha-ketoglutarate permease	NA	NA	NA	NA
AWN70032.1\|3012154_3014728_-	chaperone protein ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
AWN70033.1\|3014857_3015589_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AWN70034.1\|3015585_3016566_-	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA
AWN70035.1\|3016700_3017438_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AWN70036.1\|3017467_3017674_+	hypothetical protein	NA	NA	NA	NA
AWN70037.1\|3017708_3018050_+	ribosome-associated inhibitor A	NA	NA	NA	NA
AWN72030.1\|3018153_3018201_+	hypothetical protein	NA	NA	NA	NA
AWN70038.1\|3018299_3019460_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AWN70039.1\|3019502_3020624_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AWN70040.1\|3020634_3021705_-	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
AWN70041.1\|3021914_3022280_+	hypothetical protein	NA	NA	NA	NA
AWN70042.1\|3022429_3022948_+	DUF4154 domain-containing protein	NA	NA	NA	NA
AWN70043.1\|3022937_3024164_+	GGDEF domain-containing protein	NA	NA	NA	NA
AWN70044.1\|3024179_3024662_+	hypothetical protein	NA	NA	NA	NA
AWN70045.1\|3024738_3025086_-	50S ribosomal protein L19	NA	NA	NA	NA
AWN70046.1\|3025127_3025895_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AWN70047.1\|3025925_3026474_-	ribosome maturation factor RimM	NA	NA	NA	NA
AWN70048.1\|3026492_3026741_-	30S ribosomal protein S16	NA	NA	NA	NA
AWN70049.1\|3026877_3028239_-	signal recognition particle protein	NA	NA	NA	NA
AWN72031.1\|3028405_3029197_+	inner membrane protein YpjD	NA	NA	NA	NA
AWN72032.1\|3029262_3030504_+	DUF21 domain-containing protein	NA	NA	NA	NA
AWN70050.1\|3030558_3031152_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AWN70051.1\|3031148_3031343_-	molecular chaperone GrpE	NA	NA	NA	NA
AWN70052.1\|3031274_3032153_+	NAD(+) kinase	NA	NA	NA	NA
AWN70053.1\|3032238_3033900_+	DNA repair protein RecN	NA	NA	NA	NA
AWN70054.1\|3034048_3034390_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AWN70055.1\|3034451_3034742_-	RnfH family protein	NA	NA	NA	NA
AWN70056.1\|3034731_3035208_-	ubiquinone-binding protein	NA	NA	NA	NA
AWN70057.1\|3035339_3035822_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
3036355:3036401	attL	NA	NA	NA	NA
AWN70058.1\|3036522_3037005_+	hypothetical protein	Q19UP0	Mannheimia_phage	2.0e-17	33.7
AWN70059.1\|3037031_3037250_-	levansucrase regulator	Q53ZE7	Salmonella_virus	7.5e-28	77.8
AWN70060.1\|3037318_3038419_-	phage late control D family protein	E5G6Q3	Salmonella_phage	6.9e-178	85.8
AWN70061.1\|3038415_3038901_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-67	81.2
AWN70062.1\|3038897_3041975_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.7
AWN70063.1\|3041967_3042087_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AWN70064.1\|3042101_3042404_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	8.2e-41	90.0
AWN70065.1\|3042458_3042974_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	1.1e-88	94.2
AWN70066.1\|3042983_3044156_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
AWN70067.1\|3044288_3044723_-\|tail	phage tail protein	A0A0F7LDZ0	Escherichia_phage	4.2e-22	40.6
AWN70068.1\|3044722_3046453_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	4.7e-80	62.8
AWN70069.1\|3046449_3047055_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.2e-111	92.5
AWN70070.1\|3047047_3047956_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	4.1e-144	91.1
AWN70071.1\|3047942_3048302_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	1.5e-52	87.4
AWN70072.1\|3048298_3048877_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.2e-93	86.5
AWN70073.1\|3048945_3049392_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.5e-62	84.9
AWN70074.1\|3049384_3049816_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	9.9e-72	93.7
AWN70075.1\|3049778_3049982_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	4.0e-23	74.6
AWN70076.1\|3049911_3050340_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.9e-46	75.2
AWN70077.1\|3050336_3050714_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
AWN72033.1\|3050715_3051189_-	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
AWN70078.1\|3051208_3051424_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AWN70079.1\|3051427_3051631_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
AWN70080.1\|3051630_3052095_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
AWN70081.1\|3052190_3052841_-	hypothetical protein	E5G6M7	Salmonella_phage	3.3e-111	95.4
AWN70082.1\|3052844_3053903_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.8e-181	93.4
AWN70083.1\|3053919_3054753_-\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	1.2e-121	90.6
AWN70084.1\|3054895_3056662_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
AWN70085.1\|3056661_3057690_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.0e-172	87.7
AWN70086.1\|3057737_3058655_-	restriction endonuclease	NA	NA	NA	NA
AWN70087.1\|3058617_3059820_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	2.9e-60	36.2
AWN70088.1\|3060146_3060452_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AWN70089.1\|3060390_3060579_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
AWN70090.1\|3060731_3063146_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.0
AWN70091.1\|3063142_3064000_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.5e-159	96.5
AWN70092.1\|3063996_3064224_-	hypothetical protein	E5G6L7	Salmonella_phage	3.5e-36	98.7
AWN70093.1\|3064223_3064457_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	3.2e-32	97.4
AWN70094.1\|3064524_3064866_-	hypothetical protein	E5G6L5	Salmonella_phage	1.1e-54	96.5
AWN70095.1\|3064948_3065197_+	hypothetical protein	NA	NA	NA	NA
AWN70096.1\|3065282_3065579_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.2e-22	92.3
AWN70097.1\|3065586_3066096_-	hypothetical protein	E5G6L3	Salmonella_phage	3.4e-87	99.4
AWN70098.1\|3066128_3066371_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
AWN70099.1\|3066492_3067125_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	3.7e-59	51.9
AWN70100.1\|3067127_3068144_+\|integrase	integrase	E5G6L0	Salmonella_phage	1.4e-188	94.7
AWN70101.1\|3068154_3068823_+	hypothetical protein	NA	NA	NA	NA
AWN70102.1\|3069158_3070400_+	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.6e-101	47.3
3068909:3068955	attR	NA	NA	NA	NA
AWN70103.1\|3070538_3071633_-	XRE family transcriptional regulator	NA	NA	NA	NA
AWN70104.1\|3072890_3074052_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.6e-50	40.2
AWN70105.1\|3074066_3075365_-	XRE family transcriptional regulator	NA	NA	NA	NA
AWN70106.1\|3075382_3076545_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6
AWN70107.1\|3076572_3076806_-	hypothetical protein	NA	NA	NA	NA
AWN72034.1\|3077522_3081128_+	hypothetical protein	NA	NA	NA	NA
AWN70108.1\|3081166_3081913_+	hypothetical protein	NA	NA	NA	NA
AWN70109.1\|3081899_3082079_+	hypothetical protein	NA	NA	NA	NA
AWN70110.1\|3082346_3083228_-	hypothetical protein	NA	NA	NA	NA
AWN70111.1\|3083341_3083581_+	hypothetical protein	A0A1V0E8E5	Vibrio_phage	2.5e-08	49.2
AWN70112.1\|3083746_3084046_+	GTP-binding protein	NA	NA	NA	NA
AWN70113.1\|3084066_3085279_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.4e-99	56.8

DBSCAN-SWA_11

3160673 : 3167813

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN70183.1\|3160673_3163235_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
AWN70184.1\|3163340_3163997_+	serine/threonine protein phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
AWN70185.1\|3164047_3164815_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	56.3
AWN70186.1\|3165010_3165919_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AWN70187.1\|3165915_3167178_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.7e-135	61.4
AWN70188.1\|3167174_3167813_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028382

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

71615 : 81057

Cronobacter_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN72191.1\|71615_73574_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	2.1e-20	29.4
AWN72192.1\|73633_73867_-	DUF905 domain-containing protein	NA	NA	NA	NA
AWN72265.1\|73924_74458_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	2.3e-46	71.8
AWN72193.1\|75222_75657_-	DUF1380 domain-containing protein	NA	NA	NA	NA
AWN72194.1\|75670_75892_-	hypothetical protein	NA	NA	NA	NA
AWN72195.1\|75892_76576_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	37.4
AWN72196.1\|76652_76958_-	hypothetical protein	NA	NA	NA	NA
AWN72266.1\|76961_77864_-	DUF1281 domain-containing protein	NA	NA	NA	NA
AWN72268.1\|77901_78171_-	hypothetical protein	NA	NA	NA	NA
AWN72267.1\|78282_78531_+	protein ImpC	Q2A098	Sodalis_phage	4.1e-14	46.7
AWN72197.1\|78527_78965_+	peptidase	A0A1W6JNS2	Morganella_phage	3.7e-26	48.4
AWN72198.1\|78964_79957_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	2.3e-100	59.2
AWN72199.1\|79986_80235_+	DUF4113 domain-containing protein	F1C5A5	Cronobacter_phage	1.7e-20	58.8
AWN72200.1\|80430_81057_+	cobyrinic acid ac-diamide synthase	E5FFJ3	Burkholderia_phage	2.0e-17	31.1

DBSCAN-SWA_2

140623 : 148608

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWN72251.1\|140623_142711_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	6.8e-09	32.2
AWN72252.1\|142971_143394_-	entry exclusion protein 2	NA	NA	NA	NA
AWN72253.1\|144444_144900_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	2.3e-26	45.2
AWN72254.1\|144886_145930_-	peptidase	A0A1B0T6A2	Bacillus_phage	3.5e-06	28.3
AWN72255.1\|146218_147811_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.3e-174	61.8
AWN72256.1\|147841_148192_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	6.9e-39	65.5
AWN72257.1\|148188_148608_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	6.5e-44	88.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028381

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028382

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection