CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029595	Salmonella enterica strain DA34833 chromosome, complete genome	0 crisprs	DEDDh,WYL,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	0	0	12	0
CP029596	Salmonella enterica strain DA34833 plasmid pDA34833-94, complete sequence	0 crisprs	cas14j	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

323275 : 343694

Burkholderia_phage(47.37%)

tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO54896.1\|323275_324004_-	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
AWO54897.1\|324200_324491_-	hypothetical protein	NA	NA	NA	NA
AWO54898.1\|324739_325195_-	hypothetical protein	NA	NA	NA	NA
AWO54899.1\|325191_325797_-	DUF4376 domain-containing protein	NA	NA	NA	NA
AWO54900.1\|325801_327547_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
AWO54901.1\|327549_328182_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
AWO54902.1\|328174_329290_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
AWO54903.1\|329280_329640_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
AWO54904.1\|329803_331351_-	hypothetical protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
AWO54905.1\|331350_332280_-	glycosyltransferase	S5FKN0	Shigella_phage	8.8e-150	83.8
AWO54906.1\|332276_332639_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
AWO54907.1\|332966_333689_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
AWO54908.1\|333698_334742_-	phage protein D	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
AWO54909.1\|334729_334939_-	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
AWO54910.1\|335890_338245_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
AWO54911.1\|338341_338470_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
AWO54912.1\|338429_338747_-\|tail	phage tail assembly protein	NA	NA	NA	NA
AWO54913.1\|338798_339323_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
AWO54914.1\|339322_340750_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
AWO54915.1\|340739_340937_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
AWO54916.1\|340933_341389_-	hypothetical protein	NA	NA	NA	NA
AWO54917.1\|341548_341863_-	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
AWO54918.1\|341875_342481_-	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
AWO54919.1\|342483_342771_-	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
AWO54920.1\|343346_343694_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

DBSCAN-SWA_2

1123790 : 1169034

Enterobacteria_phage(79.41%)

terminase,integrase,lysis,coat,tail,portal,protease

attL 1114560:1114576|attR 1177329:1177345

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1114560:1114576	attL	NA	NA	NA	NA
AWO55599.1\|1123790_1124843_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
AWO55600.1\|1125125_1126229_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
AWO55601.1\|1126240_1127491_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
AWO59270.1\|1127696_1128365_-\|integrase	site-specific integrase	Q76H30	Enterobacteria_phage	4.7e-129	100.0
AWO55602.1\|1128736_1129087_-	DNA-binding protein	Q76H29	Enterobacteria_phage	3.7e-61	100.0
AWO55603.1\|1129298_1129583_-	ASCH domain-containing protein	Q76H28	Enterobacteria_phage	1.4e-50	100.0
AWO55604.1\|1129575_1129860_-	DUF4752 domain-containing protein	Q76H46	Enterobacteria_phage	1.6e-49	100.0
AWO55605.1\|1129859_1130504_-	DUF551 domain-containing protein	Q76H45	Enterobacteria_phage	1.4e-122	99.5
AWO55606.1\|1130490_1130724_-	hypothetical protein	NA	NA	NA	NA
AWO55607.1\|1130720_1131230_-	hypothetical protein	Q76H44	Enterobacteria_phage	2.8e-89	100.0
AWO55608.1\|1131226_1131397_-	DUF2737 domain-containing protein	Q76H43	Enterobacteria_phage	1.6e-25	100.0
AWO55609.1\|1131407_1131701_-	DUF2856 domain-containing protein	Q76H42	Enterobacteria_phage	1.4e-48	100.0
AWO55610.1\|1131747_1132032_-	sigma-70 family RNA polymerase sigma factor	Q76H41	Enterobacteria_phage	1.4e-45	100.0
AWO55611.1\|1132031_1132739_-	recombinase	Q76H40	Enterobacteria_phage	3.1e-139	100.0
AWO55612.1\|1132868_1133057_-	protein kil	I6S647	Salmonella_phage	3.7e-31	100.0
AWO55613.1\|1133037_1133196_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q76H38	Enterobacteria_phage	2.4e-23	100.0
AWO55614.1\|1133280_1133595_-	superinfection exclusion protein	Q76H37	Enterobacteria_phage	1.5e-56	100.0
AWO55615.1\|1133870_1134158_-	hypothetical protein	Q76H36	Enterobacteria_phage	2.7e-49	100.0
AWO55616.1\|1134191_1134836_-	pentapeptide repeat-containing protein	Q76H35	Enterobacteria_phage	6.5e-51	100.0
AWO55617.1\|1134919_1135114_-	restriction endonuclease	Q76H34	Enterobacteria_phage	1.9e-30	100.0
AWO55618.1\|1135327_1135915_+	superinfection exclusion protein B	Q76H59	Enterobacteria_phage	1.4e-100	100.0
AWO55619.1\|1135927_1136230_-	regulator	Q76H58	Enterobacteria_phage	9.7e-50	100.0
AWO55620.1\|1136593_1136797_+	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.0e-27	100.0
AWO55621.1\|1136835_1137915_-	hypothetical protein	A0A192Y6S0	Salmonella_phage	1.5e-193	100.0
AWO55622.1\|1138079_1138769_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
AWO55623.1\|1138879_1139095_+	transcriptional regulator	Q76H55	Enterobacteria_phage	1.3e-32	100.0
AWO55624.1\|1139205_1139487_+	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
AWO55625.1\|1139669_1140491_+	replication of DNA	Q76H52	Enterobacteria_phage	5.2e-154	100.0
AWO55626.1\|1140487_1141864_+	replicative DNA helicase	Q76H51	Enterobacteria_phage	1.9e-254	100.0
AWO55627.1\|1141860_1142130_+	hypothetical protein	Q76H50	Enterobacteria_phage	4.9e-45	100.0
AWO55628.1\|1142185_1142641_+	recombination protein NinB	Q76H49	Enterobacteria_phage	4.7e-80	100.0
AWO55629.1\|1142637_1142811_+	protein ninD	Q76H74	Enterobacteria_phage	2.3e-32	100.0
AWO55630.1\|1142777_1142954_+	NinE family protein	Q76H73	Enterobacteria_phage	1.0e-27	100.0
AWO55631.1\|1142956_1143298_+	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	2.1e-64	100.0
AWO55632.1\|1143290_1143467_+	protein ninF	Q76H71	Enterobacteria_phage	6.7e-27	100.0
AWO55633.1\|1143459_1144071_+	recombination protein NinG	Q76H70	Enterobacteria_phage	7.9e-99	100.0
AWO55634.1\|1144067_1144292_+	protein ninY	Q76H69	Enterobacteria_phage	6.3e-38	100.0
AWO55635.1\|1144288_1144492_+	protein ninH	I6RSQ6	Salmonella_phage	7.2e-33	100.0
AWO55636.1\|1144472_1144652_+	hypothetical protein	Q76H67	Enterobacteria_phage	1.9e-24	100.0
AWO55637.1\|1144648_1145422_+	antitermination protein	Q76H66	Enterobacteria_phage	8.1e-133	100.0
AWO55638.1\|1145534_1145768_+	hypothetical protein	M1E3N9	Enterobacteria_phage	1.1e-21	87.0
AWO55639.1\|1145852_1146056_+	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
AWO59271.1\|1146033_1146531_+	lysozyme	B8K1G9	Salmonella_phage	4.5e-92	100.0
AWO55640.1\|1146527_1146995_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.7e-77	100.0
AWO55641.1\|1147029_1147254_+	hypothetical protein	A0A1V0E5I0	Salmonella_phage	3.6e-25	88.7
AWO55642.1\|1147207_1147738_+	KilA-N domain-containing protein	Q76H61	Enterobacteria_phage	1.3e-94	100.0
AWO55643.1\|1147960_1148203_+	DUF2560 domain-containing protein	Q76H60	Enterobacteria_phage	1.7e-33	100.0
AWO55644.1\|1148206_1148596_+	hypothetical protein	Q76H27	Enterobacteria_phage	3.9e-75	100.0
AWO55645.1\|1148595_1149000_+	Decoration protein	Q76H26	Enterobacteria_phage	1.1e-67	100.0
AWO55646.1\|1149003_1149492_+	DNA-packaging protein	Q76H25	Enterobacteria_phage	1.0e-88	100.0
AWO55647.1\|1149469_1150969_+\|terminase	terminase	Q76H24	Enterobacteria_phage	2.8e-307	100.0
AWO55648.1\|1150968_1153146_+\|portal	portal protein	Q76H23	Enterobacteria_phage	0.0e+00	100.0
AWO55649.1\|1153159_1154071_+	scaffolding protein	Q76H22	Enterobacteria_phage	1.5e-162	100.0
AWO55650.1\|1154070_1155363_+\|coat	coat protein	Q76H21	Enterobacteria_phage	1.1e-243	100.0
AWO55651.1\|1155403_1155964_+	hypothetical protein	C6ZR11	Salmonella_phage	9.8e-104	100.0
AWO55652.1\|1155947_1156448_+	hypothetical protein	Q76H19	Enterobacteria_phage	4.2e-90	100.0
AWO55653.1\|1156407_1157826_+	hypothetical protein	Q76H18	Enterobacteria_phage	6.4e-277	100.0
AWO55654.1\|1157829_1158531_+\|tail	phage tail protein	Q76H17	Enterobacteria_phage	1.7e-76	100.0
AWO55655.1\|1158530_1158986_+	DUF2824 domain-containing protein	Q76H16	Enterobacteria_phage	1.8e-87	100.0
AWO55656.1\|1158988_1159678_+	DNA transfer protein	A0A2H5BFK5	Salmonella_phage	2.9e-118	100.0
AWO55657.1\|1159688_1161125_+	DNA transfer protein	Q76H14	Enterobacteria_phage	7.7e-246	100.0
AWO55658.1\|1161124_1163101_+	DNA transfer protein	Q76H13	Enterobacteria_phage	0.0e+00	100.0
AWO59272.1\|1163239_1163533_+	hypothetical protein	Q76H12	Enterobacteria_phage	3.2e-50	100.0
AWO55659.1\|1163553_1163802_-	Arc family DNA-binding protein	Q76H48	Enterobacteria_phage	1.8e-38	100.0
AWO55660.1\|1163937_1165941_+	endorhamnosidase	Q76H47	Enterobacteria_phage	0.0e+00	100.0
AWO55661.1\|1165999_1167457_-	hypothetical protein	A8CG94	Salmonella_phage	1.3e-240	100.0
AWO55662.1\|1167446_1168379_-	glycosyltransferase	A8CG95	Salmonella_phage	5.5e-176	100.0
AWO55663.1\|1168375_1168738_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
AWO55664.1\|1168854_1169034_+	hypothetical protein	M1E3P7	Enterobacteria_phage	4.3e-13	92.3
1177329:1177345	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1761676 : 1770408

Dickeya_phage(14.29%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO56205.1\|1761676_1762795_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
AWO56206.1\|1762791_1764738_+	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AWO56207.1\|1764718_1764913_+	hypothetical protein	NA	NA	NA	NA
AWO56208.1\|1764867_1765089_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AWO56209.1\|1765412_1765733_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AWO56210.1\|1765763_1768040_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AWO56211.1\|1768092_1768275_+	hypothetical protein	NA	NA	NA	NA
AWO56212.1\|1768231_1768690_+\|transposase	IS200/IS605 family transposase IS200F	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
AWO56213.1\|1769152_1770408_-\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9

DBSCAN-SWA_4

1807125 : 1919280

113

Salmonella_phage(41.38%)

terminase,lysis,tRNA,holin,tail,portal,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO56239.1\|1807125_1807887_+\|protease	metalloprotease	NA	NA	NA	NA
AWO56240.1\|1808059_1808743_+	cytidylate kinase	NA	NA	NA	NA
AWO56241.1\|1808856_1810530_+	30S ribosomal protein S1	NA	NA	NA	NA
AWO56242.1\|1810685_1810970_+	integration host factor subunit beta	A7KV42	Bacillus_phage	4.1e-10	40.2
AWO56243.1\|1811199_1813464_+	ComEC family protein	Q332C0	Clostridium_botulinum_C_phage	8.8e-10	22.5
AWO56244.1\|1813500_1815249_+	lipid A export ATP-binding/permease MsbA	W8CYL7	Bacillus_phage	3.2e-60	30.5
AWO56245.1\|1815245_1816223_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
AWO56246.1\|1816266_1817499_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
AWO56247.1\|1817550_1817733_+	hypothetical protein	NA	NA	NA	NA
AWO56248.1\|1817729_1818476_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
AWO56249.1\|1818686_1819580_+	hypothetical protein	NA	NA	NA	NA
AWO56250.1\|1819559_1820336_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
AWO56251.1\|1820471_1821275_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
AWO56252.1\|1821267_1822590_+	chromosome partition protein MukF	NA	NA	NA	NA
AWO56253.1\|1822570_1823275_+	chromosome partition protein MukE	NA	NA	NA	NA
AWO56254.1\|1823274_1827741_+	chromosome partition protein MukB	NA	NA	NA	NA
AWO56255.1\|1828085_1829927_+	L,D-transpeptidase	NA	NA	NA	NA
AWO56256.1\|1830186_1830735_+	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
AWO56257.1\|1830762_1831410_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AWO56258.1\|1831471_1832662_-	aspartate aminotransferase	NA	NA	NA	NA
AWO56259.1\|1832846_1833938_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
AWO56260.1\|1834544_1835945_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
AWO56261.1\|1836145_1836607_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
AWO56262.1\|1836603_1836837_-	hypothetical protein	NA	NA	NA	NA
AWO56263.1\|1836923_1838138_+	PLP-dependent lyase/thiolase	NA	NA	NA	NA
AWO56264.1\|1839895_1841098_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AWO56265.1\|1841292_1842585_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
AWO56266.1\|1842629_1842878_-	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
AWO56267.1\|1842918_1843158_-	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AWO56268.1\|1843200_1844358_-	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
AWO56269.1\|1844320_1847206_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	97.3
AWO56270.1\|1847332_1847632_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
AWO56271.1\|1847653_1847812_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
AWO56272.1\|1847804_1848065_-	hypothetical protein	NA	NA	NA	NA
AWO56273.1\|1848114_1848525_-	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
AWO56274.1\|1848644_1848884_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
AWO56275.1\|1848849_1849224_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
AWO56276.1\|1849308_1850292_+	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
AWO56277.1\|1850294_1851044_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
AWO56278.1\|1851054_1851402_+	DUF977 domain-containing protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
AWO56279.1\|1851398_1851710_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
AWO56280.1\|1851787_1852078_+	hypothetical protein	NA	NA	NA	NA
AWO56281.1\|1852369_1852603_+	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
AWO56282.1\|1852714_1852936_+	hypothetical protein	NA	NA	NA	NA
AWO56283.1\|1853620_1853827_+	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
AWO56284.1\|1853829_1854441_+	protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
AWO56285.1\|1854437_1854584_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
AWO56286.1\|1854573_1855371_+	antitermination protein	A0A0M4S661	Salmonella_phage	5.2e-151	99.2
AWO56287.1\|1855437_1855755_+	hypothetical protein	NA	NA	NA	NA
AWO56288.1\|1855928_1856054_+	hypothetical protein	NA	NA	NA	NA
AWO56289.1\|1856189_1856639_-	hypothetical protein	NA	NA	NA	NA
AWO56290.1\|1856999_1857686_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
AWO59303.1\|1857961_1858291_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AWO56291.1\|1858274_1858727_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AWO59304.1\|1858744_1859224_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
AWO56292.1\|1859431_1859965_+	DUF1441 domain-containing protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
AWO56293.1\|1859921_1862060_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
AWO56294.1\|1862056_1862263_+	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
AWO59305.1\|1862289_1863807_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
AWO59306.1\|1863730_1865812_+	peptidase S14	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
AWO56295.1\|1865902_1866226_+	DUF2190 domain-containing protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
AWO56296.1\|1866218_1866518_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
AWO56297.1\|1866498_1867065_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
AWO56298.1\|1867061_1867463_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
AWO56299.1\|1867474_1868224_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
AWO56300.1\|1868269_1868668_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
AWO56301.1\|1868664_1868994_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
AWO59307.1\|1869073_1872061_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
AWO56302.1\|1872057_1872390_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
AWO56303.1\|1872488_1872986_+	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
AWO56304.1\|1873102_1873636_-	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AWO56305.1\|1873725_1874421_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.5e-89	66.2
AWO56306.1\|1875065_1875770_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
AWO56307.1\|1877687_1879193_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	6.9e-120	63.9
AWO56308.1\|1879231_1879474_+	hypothetical protein	NA	NA	NA	NA
AWO56309.1\|1879527_1881966_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.7e-91	63.6
AWO56310.1\|1881965_1882547_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.3e-94	88.5
AWO56311.1\|1883022_1883991_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.9e-194	99.7
AWO56312.1\|1884638_1885265_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AWO56313.1\|1885333_1885633_-	hypothetical protein	NA	NA	NA	NA
AWO56314.1\|1885617_1886304_-	virulence protein	NA	NA	NA	NA
AWO56315.1\|1886574_1886766_-	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AWO56316.1\|1887192_1889805_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
AWO56317.1\|1890012_1891023_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
AWO56318.1\|1891188_1891731_+	cell division protein ZapC	NA	NA	NA	NA
AWO56319.1\|1891727_1892837_-	MOSC domain-containing protein	NA	NA	NA	NA
AWO56320.1\|1892935_1895044_+	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
AWO56321.1\|1895056_1896964_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
AWO56322.1\|1896978_1898232_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
AWO56323.1\|1898236_1899877_+	intermembrane transport protein PqiB	NA	NA	NA	NA
AWO56324.1\|1899873_1900437_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
AWO56325.1\|1900692_1900860_+	ribosome modulation factor	NA	NA	NA	NA
AWO56326.1\|1900959_1901478_-	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
AWO56327.1\|1901546_1903307_-\|protease	Lon protease family protein	NA	NA	NA	NA
AWO56328.1\|1903492_1903945_+	macrodomain Ter protein	NA	NA	NA	NA
AWO56329.1\|1904016_1905069_-	outer membrane protein A	NA	NA	NA	NA
AWO56330.1\|1905425_1905935_-	cell division inhibitor SulA	NA	NA	NA	NA
AWO56331.1\|1906151_1906757_+	DNA transformation protein	NA	NA	NA	NA
AWO56332.1\|1906743_1908897_-	TIGR01666 family membrane protein	NA	NA	NA	NA
AWO56333.1\|1908915_1909362_-	YccF domain-containing protein	NA	NA	NA	NA
AWO56334.1\|1909485_1911540_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
AWO56335.1\|1911575_1912034_-	methylglyoxal synthase	NA	NA	NA	NA
AWO56336.1\|1912128_1912791_-	DUF2057 domain-containing protein	NA	NA	NA	NA
AWO56337.1\|1912961_1913378_+	CoA-binding protein	NA	NA	NA	NA
AWO56338.1\|1913422_1913740_-	heat-shock protein HspQ	NA	NA	NA	NA
AWO56339.1\|1913797_1915009_-	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
AWO56340.1\|1915223_1915772_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
AWO56341.1\|1915797_1916577_+	AraC family transcriptional regulator	NA	NA	NA	NA
AWO56342.1\|1916625_1916907_+	acylphosphatase	NA	NA	NA	NA
AWO56343.1\|1916903_1917233_-	sulfurtransferase TusE	NA	NA	NA	NA
AWO56344.1\|1917319_1917979_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
AWO56345.1\|1918044_1918254_+	hypothetical protein	NA	NA	NA	NA
AWO56346.1\|1918599_1919280_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6

DBSCAN-SWA_5

2660677 : 2710838

Moraxella_phage(14.29%)

protease,integrase,tail,tRNA

attL 2701254:2701276|attR 2710969:2710991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO57081.1\|2660677_2661373_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AWO57082.1\|2661430_2663341_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.5e-92	32.7
AWO57083.1\|2663471_2663816_+	RidA family protein	NA	NA	NA	NA
AWO57084.1\|2663821_2664001_-	YoaH family protein	NA	NA	NA	NA
AWO57085.1\|2664081_2665446_+	aminodeoxychorismate synthase component I	A0A0B5J984	Pandoravirus	1.9e-44	35.0
AWO57086.1\|2665449_2666028_+	coenzyme A pyrophosphatase	NA	NA	NA	NA
AWO57087.1\|2666291_2667656_+	L-serine ammonia-lyase	NA	NA	NA	NA
AWO57088.1\|2667793_2669395_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AWO57089.1\|2669416_2670976_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	9.5e-40	44.4
AWO57090.1\|2670963_2671299_-	hypothetical protein	NA	NA	NA	NA
AWO57091.1\|2671448_2672417_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
AWO57092.1\|2672469_2673270_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
AWO57093.1\|2673282_2674134_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
AWO57094.1\|2674191_2674650_+	DUF986 domain-containing protein	NA	NA	NA	NA
AWO59338.1\|2675005_2675626_+	manganese efflux pump MntP	NA	NA	NA	NA
AWO57095.1\|2675622_2676432_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
AWO57096.1\|2676497_2678243_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
AWO57097.1\|2678462_2678672_-	cold-shock protein CspC	A0A1W6JNX5	Morganella_phage	1.6e-22	78.1
AWO57098.1\|2678684_2678828_-	DUF2627 domain-containing protein	NA	NA	NA	NA
AWO57099.1\|2679476_2679764_-	hypothetical protein	NA	NA	NA	NA
AWO57100.1\|2679834_2679978_-	PhoP/PhoQ regulator MgrB	NA	NA	NA	NA
AWO57101.1\|2680135_2680375_+	hypothetical protein	NA	NA	NA	NA
AWO57102.1\|2680586_2681378_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
AWO57103.1\|2681553_2682927_+	MFS transporter	NA	NA	NA	NA
AWO57104.1\|2682974_2683856_-\|protease	protease HtpX	NA	NA	NA	NA
AWO57105.1\|2684049_2686098_-\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
AWO57106.1\|2686117_2686804_-	RNA chaperone ProQ	NA	NA	NA	NA
AWO57107.1\|2686901_2687486_-	GAF domain-containing protein	NA	NA	NA	NA
AWO57108.1\|2687527_2688811_+	paraquat-inducible protein A	NA	NA	NA	NA
AWO57109.1\|2688773_2691413_+	MCE family protein	NA	NA	NA	NA
AWO59339.1\|2691490_2692930_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AWO57110.1\|2693044_2693284_+	DUF1480 domain-containing protein	NA	NA	NA	NA
AWO57111.1\|2693394_2693586_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AWO57112.1\|2693604_2694255_-	serine/threonine-protein phosphatase 1	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
AWO57113.1\|2694478_2694643_-	hypothetical protein	NA	NA	NA	NA
AWO57114.1\|2694927_2695650_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
AWO57115.1\|2696333_2696729_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	6.0e-15	32.0
AWO57116.1\|2697058_2697535_+	hypothetical protein	NA	NA	NA	NA
AWO57117.1\|2697922_2698342_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWO57118.1\|2698470_2698665_-	hypothetical protein	NA	NA	NA	NA
AWO57119.1\|2698711_2698981_+	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
AWO57120.1\|2699146_2699287_+	hypothetical protein	NA	NA	NA	NA
AWO57121.1\|2700750_2701119_+\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
AWO57122.1\|2701056_2701314_-	hypothetical protein	NA	NA	NA	NA
2701254:2701276	attL	NA	NA	NA	NA
AWO59340.1\|2701604_2701805_-	hypothetical protein	NA	NA	NA	NA
AWO57123.1\|2702422_2703337_+	protein PagO	NA	NA	NA	NA
AWO57124.1\|2703469_2703628_+	hypothetical protein	NA	NA	NA	NA
AWO57125.1\|2703637_2704252_+	disulfide bond formation protein B	NA	NA	NA	NA
AWO57126.1\|2705004_2705271_-	hypothetical protein	NA	NA	NA	NA
AWO57127.1\|2705399_2705525_-	arsenic transporter	NA	NA	NA	NA
AWO57128.1\|2705787_2705904_+\|tail	phage tail protein	NA	NA	NA	NA
AWO57129.1\|2706094_2706295_+	phage virulence factor	NA	NA	NA	NA
AWO57130.1\|2706391_2707273_-\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
AWO57131.1\|2707745_2707934_+	hypothetical protein	NA	NA	NA	NA
AWO57132.1\|2707998_2708166_+	lytic enzyme	NA	NA	NA	NA
AWO57133.1\|2708422_2708956_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
AWO57134.1\|2709009_2709240_-	lytic enzyme	Q8HA86	Salmonella_phage	6.1e-28	93.7
AWO59342.1\|2709429_2709924_+	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
AWO59341.1\|2709983_2710838_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
2710969:2710991	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2716196 : 2759785

Edwardsiella_phage(20.0%)

terminase,integrase,head,lysis,transposase,tail

attL 2715687:2715701|attR 2757625:2757639

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2715687:2715701	attL	NA	NA	NA	NA
AWO57139.1\|2716196_2716772_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	2.9e-95	89.5
AWO57140.1\|2716771_2718223_-\|tail	tail fiber protein	E5G6P0	Salmonella_phage	2.9e-43	71.2
AWO57141.1\|2718212_2718815_-	DUF2612 domain-containing protein	H9C0Y0	Aeromonas_phage	5.9e-30	43.2
AWO57142.1\|2718816_2720058_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	4.5e-101	49.6
AWO57143.1\|2720054_2720411_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	1.6e-19	49.1
AWO57144.1\|2720423_2721101_-	oxidoreductase	A0A077KAY0	Edwardsiella_phage	4.6e-31	35.5
AWO57145.1\|2721081_2721951_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	9.1e-32	32.7
AWO57146.1\|2721947_2722250_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
AWO57147.1\|2722249_2722960_-	hypothetical protein	A0A077KGW3	Edwardsiella_phage	6.5e-28	34.6
AWO57148.1\|2722956_2725128_-	transglycosylase	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
AWO57149.1\|2725111_2725294_-	transcription elongation factor GreA	NA	NA	NA	NA
AWO57150.1\|2725335_2725740_-	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
AWO57151.1\|2725739_2726186_-	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
AWO57152.1\|2726186_2727671_-	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	4.0e-96	41.0
AWO57153.1\|2727651_2728197_-	hypothetical protein	NA	NA	NA	NA
AWO57154.1\|2728181_2728547_-	hypothetical protein	A0A077KAW7	Edwardsiella_phage	8.8e-21	39.7
AWO57155.1\|2728543_2729128_-	hypothetical protein	H9C0W2	Aeromonas_phage	3.2e-17	30.6
AWO57156.1\|2729121_2729577_-	DUF4054 domain-containing protein	Q2NPC6	Xanthomonas_phage	1.2e-19	46.0
AWO57157.1\|2729583_2729931_-	hypothetical protein	H9C0V9	Aeromonas_phage	3.0e-10	40.2
AWO57158.1\|2729934_2730963_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
AWO57159.1\|2730962_2731445_-	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	1.1e-26	48.8
AWO57160.1\|2731446_2732793_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	3.2e-68	37.4
AWO57161.1\|2732789_2733479_-\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	4.5e-58	49.6
AWO57162.1\|2733519_2735040_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	7.5e-106	44.4
AWO57163.1\|2735039_2736461_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	1.8e-186	68.0
AWO57164.1\|2736426_2737179_-	hypothetical protein	G8C7P2	Escherichia_phage	5.3e-12	75.6
AWO57165.1\|2737249_2737432_-	DUF826 domain-containing protein	NA	NA	NA	NA
AWO59343.1\|2737657_2738098_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	3.5e-56	84.3
AWO57166.1\|2738118_2738607_-	lysozyme	M9P0E5	Enterobacteria_phage	2.1e-57	68.1
AWO59344.1\|2738584_2738887_-	alpha/beta hydrolase	NA	NA	NA	NA
AWO57167.1\|2739053_2739512_-\|transposase	IS200/IS605 family transposase IS200F	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
AWO57168.1\|2739468_2739651_-	hypothetical protein	NA	NA	NA	NA
AWO57169.1\|2740325_2740532_-	hypothetical protein	NA	NA	NA	NA
AWO57170.1\|2740648_2740876_+	hypothetical protein	NA	NA	NA	NA
AWO57171.1\|2741009_2741939_+	hypothetical protein	NA	NA	NA	NA
AWO57172.1\|2741925_2742456_+	hypothetical protein	NA	NA	NA	NA
AWO57173.1\|2742487_2742829_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.1e-54	84.1
AWO57174.1\|2743168_2743480_-	DUF1364 domain-containing protein	K7P7Q1	Enterobacteria_phage	6.1e-39	84.8
AWO57175.1\|2743476_2743671_-	hypothetical protein	S4TNP0	Salmonella_phage	6.1e-13	61.5
AWO57176.1\|2743667_2744267_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	5.0e-98	83.9
AWO57177.1\|2744330_2744579_-	hypothetical protein	NA	NA	NA	NA
AWO57178.1\|2744828_2744981_-	Hok/Gef family protein	NA	NA	NA	NA
AWO57179.1\|2745187_2745460_-	hypothetical protein	NA	NA	NA	NA
AWO57180.1\|2745456_2745852_-	DUF977 domain-containing protein	A0A088CBK9	Shigella_phage	6.4e-17	37.0
AWO57181.1\|2745864_2746326_-	replication protein	A0A0U2JGJ0	Escherichia_phage	7.8e-67	74.8
AWO57182.1\|2746318_2747326_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.8e-124	67.5
AWO57183.1\|2747369_2747864_-	hypothetical protein	NA	NA	NA	NA
AWO57184.1\|2747850_2748105_-	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
AWO57185.1\|2748203_2748602_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
AWO57186.1\|2748899_2749088_+	hypothetical protein	NA	NA	NA	NA
AWO57187.1\|2749032_2749212_-	hypothetical protein	NA	NA	NA	NA
AWO57188.1\|2749472_2749748_+	hypothetical protein	NA	NA	NA	NA
AWO57189.1\|2749751_2749958_+	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
AWO57190.1\|2750033_2750369_+	hypothetical protein	NA	NA	NA	NA
AWO57191.1\|2750509_2753200_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	2.2e-116	75.6
AWO57192.1\|2753192_2754023_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
AWO57193.1\|2754058_2754379_+	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
AWO57194.1\|2754371_2754704_+	hypothetical protein	S4TNP2	Salmonella_phage	8.5e-15	72.7
AWO57195.1\|2755314_2755494_+	DUF1187 domain-containing protein	A0A0U2QL97	Escherichia_phage	7.3e-13	60.3
AWO59345.1\|2755784_2756021_+	hypothetical protein	NA	NA	NA	NA
AWO57196.1\|2756081_2756360_+	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
AWO57197.1\|2756334_2757414_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.3e-101	52.8
AWO59346.1\|2757619_2757739_-	hypothetical protein	NA	NA	NA	NA
2757625:2757639	attR	NA	NA	NA	NA
AWO57198.1\|2757796_2758150_-	DUF2511 domain-containing protein	NA	NA	NA	NA
AWO57199.1\|2758166_2759042_-	hypothetical protein	NA	NA	NA	NA
AWO57200.1\|2759042_2759417_-	CopC domain-containing protein YobA	NA	NA	NA	NA
AWO57201.1\|2759554_2759785_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_7

2835235 : 2913895

106

Salmonella_phage(80.88%)

terminase,integrase,plate,head,holin,transposase,tail,portal,capsid,protease

attL 2841773:2841788|attR 2915518:2915533

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO57278.1\|2835235_2835694_-\|transposase	IS200/IS605 family transposase IS200F	A0A1S5RHE3	Helicobacter_phage	5.1e-10	33.9
AWO57279.1\|2835874_2837080_-	lysine-N-methylase	NA	NA	NA	NA
AWO57280.1\|2837158_2838646_-	flagellin FliC	NA	NA	NA	NA
AWO57281.1\|2838902_2840306_+	flagellar hook-associated protein 2	NA	NA	NA	NA
AWO57282.1\|2840320_2840728_+	flagellar protein FliS	NA	NA	NA	NA
AWO57283.1\|2840727_2841096_+	flagellar protein FliT	NA	NA	NA	NA
AWO57284.1\|2841167_2842652_+	alpha-amylase	NA	NA	NA	NA
2841773:2841788	attL	NA	NA	NA	NA
AWO57285.1\|2842691_2843117_-	lipoprotein	NA	NA	NA	NA
AWO57286.1\|2843242_2844508_+	YeeE/YedE family protein	NA	NA	NA	NA
AWO57287.1\|2844504_2844738_+	SirA-like protein	NA	NA	NA	NA
AWO57288.1\|2845002_2845389_+	hypothetical protein	NA	NA	NA	NA
AWO57289.1\|2845508_2845823_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
AWO57290.1\|2846039_2847722_+	flagellar M-ring protein	NA	NA	NA	NA
AWO57291.1\|2847714_2848710_+	flagellar motor switch protein FliG	NA	NA	NA	NA
AWO57292.1\|2848702_2849410_+	flagellar assembly protein FliH	NA	NA	NA	NA
AWO57293.1\|2849409_2850780_+	flagellum-specific ATP synthase	NA	NA	NA	NA
AWO57294.1\|2850801_2851245_+	flagellar protein FliJ	NA	NA	NA	NA
AWO57295.1\|2851241_2852459_+	flagellar hook-length control protein FliK	NA	NA	NA	NA
AWO57296.1\|2852563_2853031_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
AWO57297.1\|2853035_2854040_+	flagellar motor switch protein FliM	NA	NA	NA	NA
AWO57298.1\|2854036_2854450_+	flagellar motor switch protein FliN	NA	NA	NA	NA
AWO57299.1\|2854449_2854827_+	flagellar protein FliO	NA	NA	NA	NA
AWO57300.1\|2854826_2855564_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA
AWO57301.1\|2855573_2855843_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
AWO57302.1\|2855851_2856646_+	flagellar biosynthesis protein FliR	NA	NA	NA	NA
AWO57303.1\|2856927_2857551_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AWO57304.1\|2857589_2857838_-	hypothetical protein	NA	NA	NA	NA
AWO57305.1\|2857912_2858140_+	DUF2525 domain-containing protein	NA	NA	NA	NA
AWO57306.1\|2858449_2859265_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
AWO57307.1\|2859243_2860956_-	cellulose synthesis regulatory protein	A0A127AWB9	Bacillus_phage	1.2e-19	37.4
AWO57308.1\|2861120_2861366_-	DUF2158 domain-containing protein	NA	NA	NA	NA
AWO57309.1\|2861382_2862300_-	DUF808 domain-containing protein	NA	NA	NA	NA
AWO57310.1\|2862469_2863390_+	drug/metabolite exporter YedA	NA	NA	NA	NA
AWO57311.1\|2863378_2863849_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	1.2e-30	46.9
AWO57312.1\|2863829_2865260_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
AWO57313.1\|2865333_2866029_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
AWO57314.1\|2866120_2866420_-	hypothetical protein	NA	NA	NA	NA
AWO57315.1\|2867069_2868266_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
AWO59349.1\|2868526_2868715_-	cold-shock protein	NA	NA	NA	NA
AWO57316.1\|2868725_2868938_-	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
AWO57317.1\|2869392_2870661_-	protein UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
AWO57318.1\|2870663_2871083_-	protein UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
AWO57319.1\|2871209_2871371_-	hypothetical protein	NA	NA	NA	NA
AWO57320.1\|2871348_2871591_-	hypothetical protein	NA	NA	NA	NA
AWO57321.1\|2872564_2872777_+	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
AWO57322.1\|2872773_2873187_+	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
AWO57323.1\|2873422_2873656_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
AWO57324.1\|2873769_2874375_-\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
AWO57325.1\|2874344_2875907_-\|tail	phage tail protein	A0A192Y7M1	Salmonella_phage	1.0e-288	100.0
AWO57326.1\|2875893_2876481_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
AWO57327.1\|2876483_2877563_-\|plate	phage baseplate protein	A0A192Y6E4	Salmonella_phage	2.9e-205	100.0
AWO57328.1\|2877555_2877969_-	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
AWO57329.1\|2877973_2878507_-\|plate	phage baseplate assembly protein V	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
AWO57330.1\|2878506_2879565_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
AWO57331.1\|2879561_2880902_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	5.2e-252	100.0
AWO57332.1\|2880935_2882864_-\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	100.0
AWO57333.1\|2882948_2883275_-\|tail	phage tail assembly protein	A0A192Y6C5	Salmonella_phage	1.3e-52	100.0
AWO57334.1\|2883271_2883628_-\|tail	phage tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
AWO57335.1\|2883627_2885124_-\|tail	phage tail protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
AWO57336.1\|2885113_2885278_-	DUF2635 domain-containing protein	A0A1C9II04	Salmonella_phage	1.3e-24	100.0
AWO57337.1\|2885281_2885842_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	8.0e-106	100.0
AWO57338.1\|2885838_2886351_-	hypothetical protein	A0A192Y6D2	Salmonella_phage	3.5e-92	100.0
AWO57339.1\|2886322_2886727_-\|head,tail	head-tail adaptor protein	A0A192Y6C2	Salmonella_phage	3.2e-72	100.0
AWO57340.1\|2886723_2887047_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
AWO57341.1\|2887049_2887250_-	hypothetical protein	A0A192Y7K5	Salmonella_phage	1.8e-28	100.0
AWO57342.1\|2887300_2888506_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	7.0e-224	100.0
AWO57343.1\|2888520_2889207_-\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	6.5e-126	100.0
AWO57344.1\|2889148_2890390_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	2.9e-241	99.3
AWO57345.1\|2890389_2890572_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
AWO57346.1\|2890583_2892317_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.3
AWO57347.1\|2892313_2892817_-\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	1.0e-88	100.0
AWO57348.1\|2892933_2893284_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
AWO59350.1\|2893334_2893667_-	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
AWO57349.1\|2894129_2894522_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
AWO57350.1\|2894518_2895133_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
AWO57351.1\|2895132_2895414_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
AWO57352.1\|2895400_2895787_-	hypothetical protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
AWO59351.1\|2895932_2896190_-	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
AWO57353.1\|2896340_2897093_-	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
AWO59352.1\|2897106_2898096_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	4.0e-193	99.1
AWO57354.1\|2898103_2899009_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	1.1e-162	99.7
AWO57355.1\|2898980_2899370_-	RusA family crossover junction endodeoxyribonuclease	Q8HA93	Salmonella_phage	3.7e-70	100.0
AWO57356.1\|2899366_2900260_-	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	7.6e-175	100.0
AWO57357.1\|2900259_2900784_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	2.4e-96	100.0
AWO57358.1\|2900743_2901562_-	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	2.8e-136	100.0
AWO57359.1\|2901558_2901783_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AWO57360.1\|2901779_2902937_-	peptidase	Q8HA97	Salmonella_phage	4.2e-218	100.0
AWO57361.1\|2902933_2903488_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
AWO57362.1\|2903516_2903741_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AWO57363.1\|2903679_2903865_-	amino acid permease	NA	NA	NA	NA
AWO57364.1\|2903838_2904534_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
AWO57365.1\|2904739_2905078_+	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
AWO57366.1\|2905040_2905457_-	hypothetical protein	A0A1C9IHY8	Salmonella_phage	6.4e-76	100.0
AWO57367.1\|2905521_2905707_-	hypothetical protein	NA	NA	NA	NA
AWO57368.1\|2905804_2906176_+	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
AWO57369.1\|2906233_2907061_+	DUF2303 domain-containing protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
AWO57370.1\|2907197_2907737_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AWO57371.1\|2907807_2908341_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
AWO57372.1\|2908342_2908600_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
AWO57373.1\|2908610_2909192_+	molecular chaperone DnaJ	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
AWO57374.1\|2909195_2909765_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
AWO57375.1\|2909789_2910032_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
AWO57376.1\|2910033_2911023_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AWO57377.1\|2911314_2912112_+	protein MtfA	NA	NA	NA	NA
AWO57378.1\|2912483_2912774_+	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
AWO57379.1\|2913421_2913895_+	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
2915518:2915533	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3000600 : 3011106

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO57465.1\|3000600_3001914_-	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AWO57466.1\|3001940_3003020_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
AWO57467.1\|3003024_3003798_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AWO57468.1\|3003794_3004787_-	protein RfbI	NA	NA	NA	NA
AWO57469.1\|3004792_3005344_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
AWO57470.1\|3005344_3006223_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
AWO57471.1\|3006270_3007170_-	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
AWO57472.1\|3007169_3008255_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
AWO57473.1\|3008631_3009525_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AWO57474.1\|3009702_3011106_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1

DBSCAN-SWA_9

3079414 : 3088585

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO57529.1\|3079414_3081448_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
AWO57530.1\|3081688_3082147_+	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
AWO57531.1\|3082318_3082849_+	DUF1307 domain-containing protein	NA	NA	NA	NA
AWO57532.1\|3082905_3083373_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
AWO57533.1\|3083419_3084139_-	DNA-binding response regulator	NA	NA	NA	NA
AWO57534.1\|3084135_3085821_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AWO57535.1\|3086043_3086775_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
AWO57536.1\|3086834_3086942_+	hypothetical protein	NA	NA	NA	NA
AWO57537.1\|3086922_3087654_-	ABC transporter permease	NA	NA	NA	NA
AWO57538.1\|3087637_3088585_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_10

3160468 : 3172759

Salmonella_phage(45.45%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO57606.1\|3160468_3160972_-	DNA polymerase V	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
AWO57607.1\|3160999_3161290_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
AWO57608.1\|3161637_3163467_+	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
AWO57609.1\|3163520_3163964_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
AWO57610.1\|3164341_3164869_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
AWO57611.1\|3164871_3166113_-	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
AWO57612.1\|3166705_3167035_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
AWO57613.1\|3167331_3168663_+	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
AWO57614.1\|3168691_3169060_-	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
AWO59361.1\|3169074_3170064_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
AWO57615.1\|3170392_3172759_-	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7

DBSCAN-SWA_11

3513804 : 3613668

108

Salmonella_phage(36.84%)

terminase,integrase,head,tRNA,lysis,holin,transposase,tail,portal,capsid

attL 3547404:3547419|attR 3570371:3570386

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO57923.1\|3513804_3514536_-\|tRNA	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ	NA	NA	NA	NA
AWO57924.1\|3514654_3515458_+	inositol monophosphatase	NA	NA	NA	NA
AWO57925.1\|3515602_3516481_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	3.5e-15	24.7
AWO57926.1\|3516662_3517706_+	sulfite reductase subunit alpha	NA	NA	NA	NA
AWO57927.1\|3517709_3518528_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
AWO57928.1\|3518538_3519552_+	anaerobic sulfite reductase subunit AsrC	NA	NA	NA	NA
AWO57929.1\|3519552_3520539_-	nickel transporter	NA	NA	NA	NA
AWO59371.1\|3520529_3521168_-	DUF1007 domain-containing protein	NA	NA	NA	NA
AWO57930.1\|3521293_3522571_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
AWO57931.1\|3522565_3523705_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
AWO57932.1\|3523900_3525154_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
AWO57933.1\|3525478_3526669_+	flavohemoprotein	NA	NA	NA	NA
AWO57934.1\|3526850_3528395_+	transcriptional regulator CadC	NA	NA	NA	NA
AWO57935.1\|3528755_3530087_+	cadaverine/lysine antiporter	NA	NA	NA	NA
AWO57936.1\|3530169_3532314_+	lysine decarboxylase CadA	NA	NA	NA	NA
AWO57937.1\|3532369_3533830_+	dipeptide permease	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
AWO57938.1\|3533878_3534217_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA
AWO57939.1\|3534293_3535631_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
AWO57940.1\|3535627_3536392_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
AWO57941.1\|3536393_3537779_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	1.9e-15	26.1
AWO57942.1\|3538473_3542361_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.4e-127	57.6
AWO57943.1\|3542382_3542616_+	hypothetical protein	NA	NA	NA	NA
AWO57944.1\|3542616_3544161_+	lytic transglycosylase F	NA	NA	NA	NA
AWO57945.1\|3544211_3544763_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
AWO57946.1\|3544787_3545423_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
AWO57947.1\|3545426_3546788_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
AWO57948.1\|3546798_3547692_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
3547404:3547419	attL	NA	NA	NA	NA
AWO57949.1\|3547807_3548656_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AWO57950.1\|3548694_3549612_-	oxidoreductase	NA	NA	NA	NA
AWO57951.1\|3549633_3550830_-	MFS transporter	NA	NA	NA	NA
AWO57952.1\|3550945_3551872_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
AWO57953.1\|3551909_3552170_+	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
AWO57954.1\|3552281_3552662_-	holo-ACP synthase	NA	NA	NA	NA
AWO57955.1\|3552661_3553393_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AWO57956.1\|3553404_3554133_-	DNA repair protein RecO	NA	NA	NA	NA
AWO57957.1\|3554144_3555050_-	GTPase Era	NA	NA	NA	NA
AWO59372.1\|3555046_3555727_-	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
AWO57958.1\|3556000_3556975_-	S26 family signal peptidase	NA	NA	NA	NA
AWO57959.1\|3556991_3558791_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
AWO57960.1\|3559195_3560689_+	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
AWO57961.1\|3561149_3561287_+	hypothetical protein	NA	NA	NA	NA
AWO57962.1\|3561533_3562079_+\|transposase	transposase	NA	NA	NA	NA
AWO57963.1\|3561999_3562164_-\|integrase	integrase	NA	NA	NA	NA
AWO59373.1\|3562743_3562809_-	DUF4113 domain-containing protein	NA	NA	NA	NA
AWO57964.1\|3562871_3563084_-	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
AWO57965.1\|3563190_3563418_+	phage virulence factor	NA	NA	NA	NA
AWO57966.1\|3563514_3564093_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
AWO57967.1\|3564082_3564907_-\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
AWO57968.1\|3564903_3567276_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.0e-89	65.4
AWO57969.1\|3567329_3567572_-	hypothetical protein	NA	NA	NA	NA
AWO57970.1\|3567610_3570973_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
3570371:3570386	attR	NA	NA	NA	NA
AWO57971.1\|3571034_3571682_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.8e-89	77.2
AWO57972.1\|3571579_3572317_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
AWO57973.1\|3572323_3573022_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
AWO57974.1\|3573031_3573361_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
AWO57975.1\|3573363_3576459_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.1e-276	61.6
AWO57976.1\|3576430_3576769_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
AWO57977.1\|3576765_3577161_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
AWO57978.1\|3577211_3577958_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
AWO57979.1\|3577965_3578367_-\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	4.0e-51	99.0
AWO57980.1\|3578363_3578942_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
AWO57981.1\|3578928_3579306_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-28	55.6
AWO57982.1\|3579316_3579682_-	DNA packaging protein	NA	NA	NA	NA
AWO57983.1\|3579739_3580768_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.3e-114	61.1
AWO57984.1\|3580822_3581170_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
AWO57985.1\|3581182_3582679_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.1e-96	52.2
AWO57986.1\|3582668_3584249_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
AWO57987.1\|3584245_3584449_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
AWO57988.1\|3584432_3586364_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.3e-259	65.9
AWO57989.1\|3586335_3586881_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
AWO57990.1\|3586925_3587132_-	hypothetical protein	NA	NA	NA	NA
AWO57991.1\|3587166_3587568_+	inhibitor of g-type lysozyme	NA	NA	NA	NA
AWO57992.1\|3587824_3588328_-	hypothetical protein	NA	NA	NA	NA
AWO59374.1\|3588655_3589102_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	9.3e-57	83.9
AWO57993.1\|3589134_3589749_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.2e-109	93.6
AWO57994.1\|3589748_3590030_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
AWO57995.1\|3590016_3590406_-	hypothetical protein	K7PHB9	Enterobacterial_phage	4.8e-41	72.5
AWO57996.1\|3590495_3590684_-	hypothetical protein	NA	NA	NA	NA
AWO57997.1\|3590738_3590930_+	hypothetical protein	NA	NA	NA	NA
AWO57998.1\|3591210_3591636_-	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
AWO57999.1\|3591768_3592494_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	4.0e-81	66.2
AWO58000.1\|3592694_3593273_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	1.1e-49	57.2
AWO59375.1\|3593287_3594277_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	3.5e-189	97.3
AWO58001.1\|3594284_3595190_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	9.7e-162	99.3
AWO58002.1\|3595161_3595551_-	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	1.6e-68	97.7
AWO58003.1\|3596439_3596922_-	PerC family transcriptional regulator	Q8HA95	Salmonella_phage	1.8e-85	97.5
AWO58004.1\|3596923_3597883_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.2e-117	80.9
AWO58005.1\|3597879_3598104_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
AWO58006.1\|3598100_3599243_-	peptidase	A0A1C9IHV9	Salmonella_phage	1.0e-208	98.2
AWO58007.1\|3599239_3599794_-	hypothetical protein	A0A1C9II13	Salmonella_phage	1.2e-101	99.5
AWO58008.1\|3599822_3600047_-	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
AWO58009.1\|3599985_3600171_-	amino acid permease	NA	NA	NA	NA
AWO58010.1\|3600144_3600840_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
AWO58011.1\|3601193_3601352_+	hypothetical protein	H6WRX3	Salmonella_phage	2.4e-23	100.0
AWO58012.1\|3601373_3601724_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	6.4e-61	98.3
AWO58013.1\|3601850_3604778_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	98.2
AWO58014.1\|3604740_3605898_+	enterohemolysin	S4TTE8	Salmonella_phage	4.7e-217	99.7
AWO58015.1\|3605940_3606180_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
AWO58016.1\|3606220_3606505_+	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
AWO58017.1\|3606482_3607712_-	DUF4102 domain-containing protein	H6WRW7	Salmonella_phage	5.4e-232	93.9
AWO58018.1\|3608063_3608180_-	transcriptional regulator	NA	NA	NA	NA
AWO58019.1\|3608209_3608689_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
AWO58020.1\|3608685_3609642_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AWO58021.1\|3609641_3610292_-	anti-sigma-E factor RseA	NA	NA	NA	NA
AWO58022.1\|3610323_3610899_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AWO58023.1\|3611059_3611239_-	hypothetical protein	NA	NA	NA	NA
AWO58024.1\|3611323_3612946_+	L-aspartate oxidase	NA	NA	NA	NA
AWO58025.1\|3612930_3613668_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_12

4844063 : 4886756

Escherichia_phage(25.0%)

integrase,transposase,tRNA

attL 4847812:4847826|attR 4875830:4875844

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO59148.1\|4844063_4845428_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
AWO59149.1\|4845631_4846849_+\|integrase	site-specific integrase	H7BUI8	unidentified_phage	6.3e-15	28.3
AWO59150.1\|4846845_4847214_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AWO59151.1\|4847571_4848525_-	replication protein	NA	NA	NA	NA
4847812:4847826	attL	NA	NA	NA	NA
AWO59430.1\|4848511_4848739_-	DNA-binding protein	NA	NA	NA	NA
AWO59152.1\|4848889_4851649_-	conjugal transfer protein TraN	NA	NA	NA	NA
AWO59153.1\|4851745_4852279_-	regulator	NA	NA	NA	NA
AWO59154.1\|4852281_4852893_-	hypothetical protein	NA	NA	NA	NA
AWO59155.1\|4852892_4853114_-	hypothetical protein	NA	NA	NA	NA
AWO59156.1\|4853288_4853579_+	hypothetical protein	NA	NA	NA	NA
AWO59157.1\|4853598_4853853_-	hypothetical protein	NA	NA	NA	NA
AWO59158.1\|4853852_4857257_-	conjugal transfer protein TraG	NA	NA	NA	NA
AWO59159.1\|4857260_4858685_-	conjugal transfer protein TraH	NA	NA	NA	NA
AWO59160.1\|4858928_4859786_+	hypothetical protein	NA	NA	NA	NA
AWO59161.1\|4859782_4860178_+	hypothetical protein	NA	NA	NA	NA
AWO59162.1\|4860592_4860862_-	hypothetical protein	NA	NA	NA	NA
AWO59163.1\|4860939_4861125_-	hypothetical protein	NA	NA	NA	NA
AWO59164.1\|4862010_4862883_-\|integrase	integrase	NA	NA	NA	NA
AWO59165.1\|4863951_4865613_-	ATP-dependent helicase	S5MMD7	Bacillus_phage	7.1e-09	22.8
AWO59166.1\|4865609_4867535_-	ATP-dependent endonuclease	NA	NA	NA	NA
AWO59167.1\|4867612_4870156_-	subtilase	NA	NA	NA	NA
AWO59168.1\|4870176_4871166_-	ATP-binding protein	NA	NA	NA	NA
AWO59169.1\|4871244_4871829_-	recombinase family protein	E5FFF9	Burkholderia_phage	5.5e-49	58.1
AWO59170.1\|4871852_4872164_-\|transposase	transposase	NA	NA	NA	NA
AWO59171.1\|4872102_4873116_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWO59431.1\|4873261_4874053_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AWO59172.1\|4874216_4874564_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AWO59173.1\|4874557_4875529_+	dihydropteroate synthase	NA	NA	NA	NA
AWO59174.1\|4875745_4876960_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	2.5e-19	29.1
4875830:4875844	attR	NA	NA	NA	NA
AWO59175.1\|4876987_4877170_+	DUF3363 domain-containing protein	NA	NA	NA	NA
AWO59176.1\|4877166_4877793_-	TetR family transcriptional regulator	NA	NA	NA	NA
AWO59177.1\|4877896_4879072_+	tetracycline efflux MFS transporter Tet(G)	NA	NA	NA	NA
AWO59178.1\|4879092_4879884_+	LysR family transcriptional regulator	NA	NA	NA	NA
AWO59179.1\|4879975_4881508_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AWO59180.1\|4881734_4882388_-	molecular chaperone GroEL	A0A2I7SAK5	Vibrio_phage	1.1e-21	58.1
AWO59432.1\|4882593_4883460_+	PSE family carbenicillin-hydrolyzing class A beta-lactamase CARB-2	A0A077SL40	Escherichia_phage	4.8e-57	44.1
AWO59181.1\|4883676_4884024_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AWO59182.1\|4884017_4884857_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
AWO59183.1\|4884786_4884966_-	hypothetical protein	NA	NA	NA	NA
AWO59184.1\|4884984_4885485_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWO59185.1\|4885790_4885904_-	NTP-binding protein	NA	NA	NA	NA
AWO59186.1\|4885991_4886756_+\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029596

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52462 : 61758

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWO59497.1\|52462_53143_-	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-28	36.4
AWO59498.1\|53287_53476_-	hypothetical protein	NA	NA	NA	NA
AWO59499.1\|53524_53881_-	hypothetical protein	NA	NA	NA	NA
AWO59500.1\|53873_54344_-	hypothetical protein	NA	NA	NA	NA
AWO59501.1\|54854_55277_+	protein SamA	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
AWO59502.1\|55276_56551_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.9e-156	64.9
AWO59503.1\|56632_57610_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	5.2e-84	53.2
AWO59504.1\|57606_58812_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
AWO59505.1\|59226_60168_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
AWO59506.1\|60199_60766_-	DUF2913 domain-containing protein	NA	NA	NA	NA
AWO59507.1\|60822_61158_-	hypothetical protein	NA	NA	NA	NA
AWO59544.1\|61341_61758_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029595

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029596

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection