CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP028155	Salmonella enterica subsp. enterica serovar Enteritidis strain RM4283 plasmid pRM4283-2, complete sequence	0 crisprs	NA	0	0
CP028157	Salmonella enterica subsp. enterica serovar Enteritidis strain RM4283 chromosome, complete genome	2 crisprs	WYL,DinG,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	10	8
CP028156	Salmonella enterica subsp. enterica serovar Enteritidis strain RM4283 plasmid pRM4283-1, complete sequence	0 crisprs	cas14j	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028157_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028157_1

2944818-2945395

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP028157_1

>merge|CP028157|1|2944818-2945395|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACTATTTATAAGCGTGTCATCTATGCAACCCAACCGGTTTATCCCCGCTGGCGCGGGGAACACACCTGCCCGACCCAATAAGGGGGCCCTCGTGACGGTTTATCCCCGCTGGCGCGGGGAACACGGCCGCTGGTCAAATTCCCAATCTGAGCAATCCGGTTTATCCCCGCTGGCGCGGGGAACACATAGCCCCGGCAGCGATAGCTAAACCAGTTCCCGGTTTATCCCCGCTGGCGCGGGGAACACGCCTCAAAATCTCTCGGTGAGATGTAAGCGTCCGGTTTATCCCCGCTGGCGCGGGGAACACACCAGTGGTCAGCGGCGGATGAATTTGCCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGAGAATGCTCATGCGCGTGAGCGCCATATATTCGGTTTATCCCCGCTGGCGCGGGGAACACCATGGCAATTTTACGGCGGACGTGCTCGCTCTCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGGACCGAAAAACCGTTTTCAGCCAACGTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028157|1|1|2944818-2945395|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAGCCCCGGCAGCGATAGCTAAACCAGTTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGGCAATTTTACGGCGGACGTGCTCGCTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028157|1|1|2944818-2945395|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAC	TATTTATAAGCGTGTCATCTATGCAACCCAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCTGCCCGACCCAATAAGGGGGCCCTCGTGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCCGCTGGTCAAATTCCCAATCTGAGCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAGCCCCGGCAGCGATAGCTAAACCAGTTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCCTCAAAATCTCTCGGTGAGATGTAAGCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCAGTGGTCAGCGGCGGATGAATTTGCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGAATGCTCATGCGCGTGAGCGCCATATATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CATGGCAATTTTACGGCGGACGTGCTCGCTCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGGACCGAAAAACCGTTTTCAGCCAACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028157|1|1|2944820-2945395|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACTA	TTTATAAGCGTGTCATCTATGCAACCCAACCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CTGCCCGACCCAATAAGGGGGCCCTCGTGACG
GTTTATCCCCGCTGGCGCGGGGAACACGG	CCGCTGGTCAAATTCCCAATCTGAGCAATCCG
GTTTATCCCCGCTGGCGCGGGGAACACAT	AGCCCCGGCAGCGATAGCTAAACCAGTTCCCG
GTTTATCCCCGCTGGCGCGGGGAACACGC	CTCAAAATCTCTCGGTGAGATGTAAGCGTCCG
GTTTATCCCCGCTGGCGCGGGGAACACAC	CAGTGGTCAGCGGCGGATGAATTTGCCCTGCG
GTTTATCCCCGCTGGCGCGGGGAACACGA	GAATGCTCATGCGCGTGAGCGCCATATATTCG
GTTTATCCCCGCTGGCGCGGGGAACACCA	TGGCAATTTTACGGCGGACGTGCTCGCTCTCG
GTTTATCCCCGCTGGCGCGGGGAACACAG	GCGGACCGAAAAACCGTTTTCAGCCAACGTCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028157.1\|AWP43353.1\|2941148_2942588_-\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP028157.1\|AWP43348.1\|2938472_2938952_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP028157.1\|AWP43350.1\|2939680_2939992_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP028157.1\|AWP43352.1\|2940556_2941162_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP028157.1\|AWP43346.1\|2936684_2937446_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP028157.1\|AWP43358.1\|2946701_2947352_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP028157.1\|AWP43357.1\|2945784_2946705_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP028157.1\|AWP43360.1\|2948090_2949149_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP028157.1\|AWP43354.1\|2942597_2943506_-\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP028157.1\|AWP43347.1\|2937426_2938476_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP028157.1\|AWP43355.1\|2943756_2944803_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP028157.1\|AWP43349.1\|2938951_2939662_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP028157.1\|AWP43361.1\|2949162_2949717_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP028157.1\|AWP43359.1\|2947333_2948080_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP028157.1\|AWP45009.1\|2954388_2955342_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP028157.1\|AWP45010.1\|2954066_2954273_+\|hypothetical-protein	unknown	unknown	unknown
CP028157.1\|AWP43362.1\|2949713_2951270_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP028157.1\|AWP43351.1\|2940182_2940539_-\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP028157.1\|AWP43356.1\|2945491_2945785_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP028157.1\|AWP43363.1\|2951281_2953945_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124

Protein	Function_ID	Function_description	E-value
CP028157.1\|AWP43353.1\|2941148_2942588_-\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP028157.1\|AWP43348.1\|2938472_2938952_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
CP028157.1\|AWP43350.1\|2939680_2939992_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP028157.1\|AWP43352.1\|2940556_2941162_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	2.19317e-145
CP028157.1\|AWP43346.1\|2936684_2937446_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP028157.1\|AWP43358.1\|2946701_2947352_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	7.7595e-75
CP028157.1\|AWP43357.1\|2945784_2946705_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.63116e-157
CP028157.1\|AWP43360.1\|2948090_2949149_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	4.28543e-133
CP028157.1\|AWP43354.1\|2942597_2943506_-\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP028157.1\|AWP43347.1\|2937426_2938476_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP028157.1\|AWP43355.1\|2943756_2944803_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP028157.1\|AWP43349.1\|2938951_2939662_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119
CP028157.1\|AWP43361.1\|2949162_2949717_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.26497e-33
CP028157.1\|AWP43359.1\|2947333_2948080_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.23137e-48
CP028157.1\|AWP45009.1\|2954388_2955342_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP028157.1\|AWP43362.1\|2949713_2951270_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP028157.1\|AWP43351.1\|2940182_2940539_-\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP028157.1\|AWP43356.1\|2945491_2945785_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP028157.1\|AWP43363.1\|2951281_2953945_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0

>CP028157.1|AWP43355.1|2943756_2944803_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP028157.1|AWP43354.1|2942597_2943506_-|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP028157.1|AWP43353.1|2941148_2942588_-|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYCEETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP028157.1|AWP43352.1|2940556_2941162_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHCGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP028157.1|AWP43351.1|2940182_2940539_-|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP028157.1|AWP43350.1|2939680_2939992_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP028157.1|AWP43349.1|2938951_2939662_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP028157.1|AWP43348.1|2938472_2938952_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP028157.1|AWP43347.1|2937426_2938476_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP028157.1|AWP43346.1|2936684_2937446_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>CP028157.1|AWP43356.1|2945491_2945785_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP028157.1|AWP43357.1|2945784_2946705_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP028157.1|AWP43358.1|2946701_2947352_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASTIFDVQTRPFAPMLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALEWLARQGEQNGFTLREASVDAYRQQQIRREKSRQMIQFSSVDYTGVLVINEPALFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>CP028157.1|AWP43359.1|2947333_2948080_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNTFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQAALQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLTLPGLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP028157.1|AWP43360.1|2948090_2949149_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALHENMNEVYAQETAFKNFNVMNQQGSMKDVLDFICA
>CP028157.1|AWP43361.1|2949162_2949717_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDTDNEQD
>CP028157.1|AWP43362.1|2949713_2951270_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>CP028157.1|AWP43363.1|2951281_2953945_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP028157.1|AWP45010.1|2954066_2954273_+|hypothetical-protein
MFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP028157.1|AWP45009.1|2954388_2955342_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT

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Crispr_ID: CP028157_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028157_2

2961547-2962063

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CNGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

8 spacers

cas3

The CRISPR arrays of CP028157_2

>merge|CP028157|2|2961547-2962063|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACCCGATTAAGATCCGCAGTCTGCATCAGTAACTCGGTTTATCCCCGCTGGCGAGGGGAACACCGATTCTACGGCAACAGGCCAGGCTGCGACCGCGGTTTATCCCCGCTGGCGCGGGGAACACATGACATGACCGTGACTAGCGAGAATGTCCCACGGTTTATCCCCGCTGGCGCGGGGAACACTCATGCGCTATAAAAATCAGACTGTCACATGCCGGTTTATCCCCGCTGGCGCGGGGAACACTGATTATTGACGACAACAGCACAGACCGGCAGCAGTTTATCCCCGCTGGCGCGGGGAACACAATAATCGGCAATTTGTCCTGGACAGGCACGGCAGTTTATCCCCGCTGGCGCGGGGAACACGAATCTGGAGGCCAACAGCGCGGCGAAATCCTCAGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028157|2|2|2961547-2962063|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCATGCGCTATAAAAATCAGACTGTCACATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCT
CAGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028157|2|2|2961547-2962063|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCATGCGCTATAAAAATCAGACTGTCACATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCT
CAGTTTATCCCCGCTGGCGCGGGGAACAC

>CP028157|2|2|2961610-2962063|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACTCG
GTTTATCCCCGCTGGCGAGGGGAACAC	CGATTCTACGGCAACAGGCCAGGCTGCGACCGCG
GTTTATCCCCGCTGGCGCGGGGAACAC	ATGACATGACCGTGACTAGCGAGAATGTCCCACG
GTTTATCCCCGCTGGCGCGGGGAACAC	TCATGCGCTATAAAAATCAGACTGTCACATGCCG
GTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGGCA
GTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTGGAGGCCAACAGCGCGGCGAAATCCTCA
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028157.1\|AWP43367.1\|2960200_2960563_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP028157.1\|AWP43365.1\|2956265_2957978_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP028157.1\|AWP43374.1\|2968487_2971187_+\|PapC/FimD-family-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP028157.1\|AWP43366.1\|2957977_2959777_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP028157.1\|AWP43377.1\|2972513_2972984_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP028157.1\|AWP43378.1\|2972980_2973517_+\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP028157.1\|AWP43370.1\|2963166_2964465_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP028157.1\|AWP43363.1\|2951281_2953945_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP028157.1\|AWP43373.1\|2967820_2968408_+\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP028157.1\|AWP43369.1\|2962359_2963031_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP028157.1\|AWP43376.1\|2971992_2972499_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP028157.1\|AWP43368.1\|2960650_2961448_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP028157.1\|AWP45011.1\|2956090_2956309_+\|hypothetical-protein	unknown	unknown	unknown
CP028157.1\|AWP43364.1\|2955429_2956164_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP028157.1\|AWP43372.1\|2966412_2967213_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP028157.1\|AWP45009.1\|2954388_2955342_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP028157.1\|AWP45012.1\|2960101_2960272_-\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP028157.1\|AWP45010.1\|2954066_2954273_+\|hypothetical-protein	unknown	unknown	unknown
CP028157.1\|AWP43371.1\|2964547_2966185_-\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP028157.1\|AWP43375.1\|2971199_2971973_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177

Protein	Function_ID	Function_description	E-value
CP028157.1\|AWP43367.1\|2960200_2960563_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP028157.1\|AWP43365.1\|2956265_2957978_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP028157.1\|AWP43374.1\|2968487_2971187_+\|PapC/FimD-family-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP028157.1\|AWP43366.1\|2957977_2959777_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP028157.1\|AWP43377.1\|2972513_2972984_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
CP028157.1\|AWP43370.1\|2963166_2964465_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP028157.1\|AWP43363.1\|2951281_2953945_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP028157.1\|AWP43378.1\|2972980_2973517_+\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
CP028157.1\|AWP43369.1\|2962359_2963031_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP028157.1\|AWP43376.1\|2971992_2972499_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP028157.1\|AWP43368.1\|2960650_2961448_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102
CP028157.1\|AWP45009.1\|2954388_2955342_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP028157.1\|AWP43364.1\|2955429_2956164_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
CP028157.1\|AWP43372.1\|2966412_2967213_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP028157.1\|AWP43373.1\|2967820_2968408_+\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP028157.1\|AWP43371.1\|2964547_2966185_-\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP028157.1\|AWP43375.1\|2971199_2971973_+\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0

>CP028157.1|AWP43368.1|2960650_2961448_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP028157.1|AWP43367.1|2960200_2960563_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP028157.1|AWP45012.1|2960101_2960272_-|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP028157.1|AWP43366.1|2957977_2959777_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWCWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP028157.1|AWP43365.1|2956265_2957978_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP028157.1|AWP45011.1|2956090_2956309_+|hypothetical-protein
MVSANASTRSTFGSSFRAFRSSLDISSSRYTLPDGASLIRPTRAVGRIRHLCRHPAIQVIPRNHARDRAPGE
>CP028157.1|AWP43364.1|2955429_2956164_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP028157.1|AWP45009.1|2954388_2955342_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP028157.1|AWP45010.1|2954066_2954273_+|hypothetical-protein
MFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP028157.1|AWP43363.1|2951281_2953945_-|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP028157.1|AWP43369.1|2962359_2963031_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP028157.1|AWP43370.1|2963166_2964465_-|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP028157.1|AWP43371.1|2964547_2966185_-|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP028157.1|AWP43372.1|2966412_2967213_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP028157.1|AWP43373.1|2967820_2968408_+|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP028157.1|AWP43374.1|2968487_2971187_+|PapC/FimD-family-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP028157.1|AWP43375.1|2971199_2971973_+|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP028157.1|AWP43376.1|2971992_2972499_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP028157.1|AWP43377.1|2972513_2972984_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP028157.1|AWP43378.1|2972980_2973517_+|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028157_2	2.3\|2961698\|32\|CP028157\|CRISPRCasFinder,CRT	2961698-2961729	32	MN694003	Marine virus AFVG_250M677, complete genome	17629-17660	8	0.75
CP028157_2	2.6\|2961881\|32\|CP028157\|CRISPRCasFinder,CRT	2961881-2961912	32	MG592432	Vibrio phage 1.050.O._10N.286.48.A6, partial genome	21687-21718	8	0.75
CP028157_2	2.6\|2961881\|32\|CP028157\|CRISPRCasFinder,CRT	2961881-2961912	32	MG592431	Vibrio phage 1.049.O._10N.286.54.B5, partial genome	21426-21457	8	0.75
CP028157_2	2.10\|2961698\|34\|CP028157\|PILER-CR	2961698-2961731	34	MN694003	Marine virus AFVG_250M677, complete genome	17627-17660	8	0.765
CP028157_1	1.1\|2944847\|32\|CP028157\|CRISPRCasFinder,CRT	2944847-2944878	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
CP028157_1	1.3\|2944969\|32\|CP028157\|CRISPRCasFinder,CRT	2944969-2945000	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
CP028157_1	1.3\|2944969\|32\|CP028157\|CRISPRCasFinder,CRT	2944969-2945000	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
CP028157_1	1.3\|2944969\|32\|CP028157\|CRISPRCasFinder,CRT	2944969-2945000	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
CP028157_1	1.3\|2944969\|32\|CP028157\|CRISPRCasFinder,CRT	2944969-2945000	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
CP028157_1	1.7\|2945213\|32\|CP028157\|CRISPRCasFinder,CRT	2945213-2945244	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
CP028157_1	1.10\|2944849\|32\|CP028157\|PILER-CR	2944849-2944880	32	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5532	9	0.719
CP028157_1	1.12\|2944971\|32\|CP028157\|PILER-CR	2944971-2945002	32	MK449011	Streptococcus phage Javan92, complete genome	36157-36188	9	0.719
CP028157_1	1.12\|2944971\|32\|CP028157\|PILER-CR	2944971-2945002	32	MK448835	Streptococcus phage Javan93, complete genome	36157-36188	9	0.719
CP028157_1	1.12\|2944971\|32\|CP028157\|PILER-CR	2944971-2945002	32	MK448836	Streptococcus phage Javan95, complete genome	37400-37431	9	0.719
CP028157_1	1.12\|2944971\|32\|CP028157\|PILER-CR	2944971-2945002	32	MK448825	Streptococcus phage Javan639, complete genome	37400-37431	9	0.719
CP028157_1	1.16\|2945215\|32\|CP028157\|PILER-CR	2945215-2945246	32	KY006853	Erythrobacter phage vB_EliS_R6L, complete genome	41418-41449	9	0.719
CP028157_2	2.6\|2961881\|32\|CP028157\|CRISPRCasFinder,CRT	2961881-2961912	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	34441-34472	9	0.719
CP028157_2	2.8\|2962003\|32\|CP028157\|CRISPRCasFinder,CRT	2962003-2962034	32	CP006879	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence	405613-405644	9	0.719
CP028157_2	2.8\|2962003\|32\|CP028157\|CRISPRCasFinder,CRT	2962003-2962034	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	699963-699994	10	0.688

1. spacer 2.3|2961698|32|CP028157|CRISPRCasFinder,CRT matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.75

cgattctacggcaacaggccaggctgcgaccg	CRISPR spacer
ggcgagcacggcaacagcccaggctgcgatcg	Protospacer
 *    .********** ***********.**

2. spacer 2.6|2961881|32|CP028157|CRISPRCasFinder,CRT matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

3. spacer 2.6|2961881|32|CP028157|CRISPRCasFinder,CRT matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

4. spacer 2.10|2961698|34|CP028157|PILER-CR matches to MN694003 (Marine virus AFVG_250M677, complete genome) position: , mismatch: 8, identity: 0.765

cgattctacggcaacaggccaggctgcgaccgcg	CRISPR spacer
ggcgagcacggcaacagcccaggctgcgatcgcg	Protospacer
 *    .********** ***********.****

5. spacer 1.1|2944847|32|CP028157|CRISPRCasFinder,CRT matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

6. spacer 1.3|2944969|32|CP028157|CRISPRCasFinder,CRT matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

7. spacer 1.3|2944969|32|CP028157|CRISPRCasFinder,CRT matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

8. spacer 1.3|2944969|32|CP028157|CRISPRCasFinder,CRT matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

9. spacer 1.3|2944969|32|CP028157|CRISPRCasFinder,CRT matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

10. spacer 1.7|2945213|32|CP028157|CRISPRCasFinder,CRT matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

11. spacer 1.10|2944849|32|CP028157|PILER-CR matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.719

tatttataagcgtgtcatctatgcaacccaac	CRISPR spacer
aatttataatcatgtcatctatgccataattc	Protospacer
 ******** *.************ *.    *

12. spacer 1.12|2944971|32|CP028157|PILER-CR matches to MK449011 (Streptococcus phage Javan92, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

13. spacer 1.12|2944971|32|CP028157|PILER-CR matches to MK448835 (Streptococcus phage Javan93, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

14. spacer 1.12|2944971|32|CP028157|PILER-CR matches to MK448836 (Streptococcus phage Javan95, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

15. spacer 1.12|2944971|32|CP028157|PILER-CR matches to MK448825 (Streptococcus phage Javan639, complete genome) position: , mismatch: 9, identity: 0.719

ggccgctggtcaaattcccaatctgagcaatc	CRISPR spacer
tacatcttgacaaattcccaatctgagcgact	Protospacer
 .*  ** * ******************.*..

16. spacer 1.16|2945215|32|CP028157|PILER-CR matches to KY006853 (Erythrobacter phage vB_EliS_R6L, complete genome) position: , mismatch: 9, identity: 0.719

gagaatgctcatgcgcgtgagcgccatatatt	CRISPR spacer
cgaaatgatcatgcgcgtcagcgccattgcgt	Protospacer
 ..**** ********** ********    *

17. spacer 2.6|2961881|32|CP028157|CRISPRCasFinder,CRT matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
agcttattgacgaaaacggcacagacaccaaa	Protospacer
 * ********** ***.********    *.

18. spacer 2.8|2962003|32|CP028157|CRISPRCasFinder,CRT matches to CP006879 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602b, complete sequence) position: , mismatch: 9, identity: 0.719

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gaatctggagggcgacagcgcggtcgaccctg	Protospacer
*********** *.*********. .* .*.

19. spacer 2.8|2962003|32|CP028157|CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

gaatctggaggccaacagcgcggcgaaatcct	CRISPR spacer
gtggtcataggccatcagcgcggcgatatccc	Protospacer
* . ... ****** *********** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

931792 : 939105

Dickeya_phage(16.67%)

integrase,protease

attL 920530:920544|attR 939323:939337

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
920530:920544	attL	NA	NA	NA	NA
AWP41472.1\|931792_932911_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
AWP41473.1\|932907_934854_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
AWP41474.1\|934834_935029_+	hypothetical protein	NA	NA	NA	NA
AWP41475.1\|934983_935205_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
AWP41476.1\|935528_935849_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
AWP41477.1\|935879_938156_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
AWP41478.1\|938368_938566_-	hypothetical protein	NA	NA	NA	NA
AWP41479.1\|938727_939105_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
939323:939337	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1010423 : 1021648

Salmonella_phage(40.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP41532.1\|1010423_1010834_-	enterohemolysin	H6WRX0	Salmonella_phage	5.0e-33	100.0
AWP41533.1\|1010854_1011484_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.6e-75	65.9
AWP41534.1\|1011467_1012094_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
AWP41535.1\|1012090_1013800_+\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
AWP41536.1\|1013799_1014381_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
AWP41537.1\|1014384_1014633_-\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	2.8e-18	66.2
AWP41538.1\|1014858_1015827_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
AWP41539.1\|1016474_1017101_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
AWP41540.1\|1017460_1018147_-	virulence protein	NA	NA	NA	NA
AWP41541.1\|1018417_1018609_-	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
AWP41542.1\|1019035_1021648_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8

DBSCAN-SWA_3

1187776 : 1243509

Salmonella_phage(17.39%)

integrase,lysis,tRNA,protease,holin,tail

attL 1233917:1233934|attR 1244630:1244647

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP41715.1\|1187776_1189510_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	9.8e-86	33.6
AWP41716.1\|1189746_1190316_+	VOC family protein	NA	NA	NA	NA
AWP41717.1\|1190335_1191082_+	copper homeostasis protein CutC	NA	NA	NA	NA
AWP41718.1\|1191059_1191269_+	hypothetical protein	NA	NA	NA	NA
AWP41719.1\|1191317_1192289_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AWP41720.1\|1192285_1193029_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.9
AWP41721.1\|1193069_1193465_-	hypothetical protein	NA	NA	NA	NA
AWP41722.1\|1193517_1194336_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	4.5e-57	80.3
AWP44938.1\|1194332_1194899_-	hydrolase	NA	NA	NA	NA
AWP41723.1\|1195223_1196996_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AWP41724.1\|1197098_1197551_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AWP41725.1\|1197580_1198321_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AWP41726.1\|1198357_1198879_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	2.6e-10	35.1
AWP41727.1\|1198880_1199480_-	hypothetical protein	NA	NA	NA	NA
AWP44939.1\|1199706_1200381_+	hypothetical protein	NA	NA	NA	NA
AWP41728.1\|1200740_1201352_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AWP41729.1\|1201360_1202371_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.4e-07	26.4
AWP41730.1\|1202449_1203235_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AWP41731.1\|1203231_1203987_-	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	8.5e-18	29.4
AWP41732.1\|1204050_1205010_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AWP41733.1\|1205025_1206345_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	2.6e-14	40.9
AWP41734.1\|1206235_1206463_-	hypothetical protein	NA	NA	NA	NA
AWP41735.1\|1206461_1207433_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AWP41736.1\|1207505_1208948_-	pyruvate kinase II	NA	NA	NA	NA
AWP41737.1\|1209071_1209941_-	transcriptional regulator HexR	NA	NA	NA	NA
AWP41738.1\|1210124_1210310_-	hypothetical protein	NA	NA	NA	NA
AWP41739.1\|1210282_1211758_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.6e-79	37.5
AWP41740.1\|1211992_1213804_+	phosphogluconate dehydratase	NA	NA	NA	NA
AWP41741.1\|1213841_1214483_+	keto-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
AWP41742.1\|1214582_1215761_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
AWP41743.1\|1215891_1216182_+	damage-inducible protein YebG	NA	NA	NA	NA
AWP41744.1\|1216249_1216603_+	hypothetical protein	NA	NA	NA	NA
AWP41745.1\|1216696_1217356_+	DUF533 domain-containing protein	NA	NA	NA	NA
AWP41746.1\|1217568_1219620_+	oligopeptidase B	NA	NA	NA	NA
AWP41747.1\|1219656_1220355_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	2.8e-07	40.4
AWP41748.1\|1220378_1221035_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
AWP41749.1\|1221142_1221373_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
AWP41750.1\|1221510_1221885_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AWP41751.1\|1221885_1222761_+	hypothetical protein	NA	NA	NA	NA
AWP41752.1\|1222777_1223131_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AWP44940.1\|1223188_1223308_+	hypothetical protein	NA	NA	NA	NA
AWP41753.1\|1223513_1224593_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.0e-101	52.5
AWP41754.1\|1224567_1224846_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.4e-10	37.5
AWP41755.1\|1225259_1227239_+	hypothetical protein	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
AWP41756.1\|1227256_1227448_-	hypothetical protein	NA	NA	NA	NA
AWP41757.1\|1227870_1228176_+	hypothetical protein	NA	NA	NA	NA
AWP41758.1\|1228239_1228839_+	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
AWP41759.1\|1228835_1229063_+	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
AWP41760.1\|1229192_1229882_+	antiterminator	I6PDF8	Cronobacter_phage	2.1e-60	54.9
AWP44941.1\|1229978_1230503_+	hypothetical protein	NA	NA	NA	NA
AWP41761.1\|1230876_1231326_-	hypothetical protein	NA	NA	NA	NA
AWP41762.1\|1231686_1232373_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
AWP44942.1\|1232648_1232978_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
AWP41763.1\|1232961_1233414_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
AWP44943.1\|1233431_1233911_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
1233917:1233934	attL	NA	NA	NA	NA
AWP41764.1\|1234805_1235339_-	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
AWP41765.1\|1235428_1236124_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
AWP41766.1\|1240178_1240901_-	guanine nucleotide exchange factor SopE	NA	NA	NA	NA
AWP41767.1\|1241380_1242181_-	hypothetical protein	NA	NA	NA	NA
AWP44944.1\|1243125_1243509_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	2.7e-12	37.4
1244630:1244647	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1462634 : 1473421

Escherichia_phage(72.73%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP41983.1\|1462634_1464008_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	32.0
AWP41984.1\|1464051_1464987_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	7.2e-144	97.3
AWP41985.1\|1465303_1465921_-	exodeoxyribonuclease	A0A088CD28	Shigella_phage	2.5e-36	41.9
AWP41986.1\|1465948_1466266_-	hypothetical protein	NA	NA	NA	NA
AWP41987.1\|1466350_1466572_-	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	7.9e-33	83.6
AWP41988.1\|1467009_1467531_+	hypothetical protein	NA	NA	NA	NA
AWP44958.1\|1467638_1467794_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	2.6e-06	48.9
AWP41989.1\|1468178_1468646_-	transcriptional regulator	A0A0U2QW76	Escherichia_phage	1.0e-53	66.9
AWP41990.1\|1468918_1469248_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	6.5e-23	51.7
AWP41991.1\|1469409_1469964_-	hypothetical protein	NA	NA	NA	NA
AWP41992.1\|1469960_1470893_-	hypothetical protein	NA	NA	NA	NA
AWP41993.1\|1471262_1471475_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	2.5e-28	95.7
AWP41994.1\|1471998_1472598_+	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	5.5e-97	82.9
AWP41995.1\|1472597_1472888_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.1e-40	76.0
AWP41996.1\|1472884_1473421_+	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	1.4e-70	70.9

DBSCAN-SWA_5

1913016 : 1923002

Salmonella_phage(50.0%)

integrase,capsid

attL 1908767:1908780|attR 1921673:1921686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1908767:1908780	attL	NA	NA	NA	NA
AWP42420.1\|1913016_1914540_-\|capsid	phage major capsid protein	A0A192Y5U9	Salmonella_phage	2.5e-234	97.7
AWP42421.1\|1914647_1915037_-	hypothetical protein	K7PHB9	Enterobacterial_phage	8.1e-41	71.8
AWP42422.1\|1915125_1915698_-	hypothetical protein	NA	NA	NA	NA
AWP42423.1\|1915710_1916784_-	hypothetical protein	NA	NA	NA	NA
AWP42424.1\|1916833_1917148_-	phage antitermination protein	A0A192Y5X6	Salmonella_phage	4.8e-52	96.9
AWP42425.1\|1917321_1917552_-	hypothetical protein	NA	NA	NA	NA
AWP42426.1\|1917839_1918757_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	4.2e-96	59.1
AWP42427.1\|1918851_1919391_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
AWP44974.1\|1919722_1920220_+	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	5.6e-18	67.6
AWP42428.1\|1920269_1920506_+	excisionase	NA	NA	NA	NA
AWP42429.1\|1920495_1921638_+\|integrase	integrase	O21929	Phage_21	4.5e-172	79.7
AWP42430.1\|1921751_1923002_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	90.7
1921673:1921686	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2033169 : 2044139

Salmonella_phage(54.55%)

lysis,integrase,terminase

attL 2037222:2037235|attR 2046233:2046246

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP42543.1\|2033169_2033634_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.3e-48	62.1
AWP42544.1\|2033766_2034156_-	HNH endonuclease	K7P6U5	Enterobacteria_phage	1.4e-45	72.1
AWP42545.1\|2034206_2034530_+	hypothetical protein	NA	NA	NA	NA
AWP42546.1\|2035014_2035389_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	8.9e-53	91.7
AWP42547.1\|2035439_2035697_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	4.9e-42	98.8
AWP42548.1\|2035707_2036541_+	hypothetical protein	Q8HAA7	Salmonella_phage	4.0e-162	99.6
AWP42549.1\|2036544_2037114_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
AWP42550.1\|2037138_2037381_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
2037222:2037235	attL	NA	NA	NA	NA
AWP42551.1\|2037382_2038372_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
AWP42552.1\|2038663_2039461_+	protein MtfA	NA	NA	NA	NA
AWP42553.1\|2039832_2040123_+	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	1.2e-07	49.1
AWP42554.1\|2040787_2042086_+	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	6.2e-69	38.2
AWP42555.1\|2042237_2044139_+	site-specific DNA-methyltransferase	A0A2K5B2C1	Erysipelothrix_phage	3.0e-136	43.1
2046233:2046246	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2158869 : 2169376

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP42667.1\|2158869_2160183_-	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
AWP42668.1\|2160209_2161289_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
AWP42669.1\|2161293_2162067_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AWP42670.1\|2162082_2163057_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AWP42671.1\|2163062_2163614_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
AWP42672.1\|2163614_2164493_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
AWP42673.1\|2164540_2165440_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
AWP42674.1\|2165439_2166525_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
AWP42675.1\|2166901_2167795_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.8e-44	42.2
AWP42676.1\|2167972_2169376_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5

DBSCAN-SWA_8

2236573 : 2245744

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP42730.1\|2236573_2238607_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9
AWP42731.1\|2238847_2239306_+	hypothetical protein	Q9EYF5	Enterobacteria_phage	6.4e-53	72.5
AWP42732.1\|2239477_2240008_+	DUF1307 domain-containing protein	NA	NA	NA	NA
AWP42733.1\|2240064_2240532_-	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	4.3e-73	89.7
AWP42734.1\|2240578_2241298_-	DNA-binding response regulator	NA	NA	NA	NA
AWP42735.1\|2241294_2242980_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
AWP42736.1\|2243202_2243934_+	transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.7e-100	87.4
AWP42737.1\|2243993_2244101_+	hypothetical protein	NA	NA	NA	NA
AWP42738.1\|2244081_2244813_-	ABC transporter permease	NA	NA	NA	NA
AWP42739.1\|2244796_2245744_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028156

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18115 : 44421

Escherichia_phage(27.27%)

transposase,integrase

attL 16950:16964|attR 50429:50443

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
16950:16964	attL	NA	NA	NA	NA
AWP40591.1\|18115_18898_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.6e-51	91.1
AWP40592.1\|18906_19620_+	EAL domain-containing protein	NA	NA	NA	NA
AWP40593.1\|19623_20133_+	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
AWP40594.1\|20126_20612_+	hypothetical protein	NA	NA	NA	NA
AWP40595.1\|20888_21176_-	hypothetical protein	NA	NA	NA	NA
AWP40596.1\|21331_21892_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
AWP40597.1\|21958_22309_-\|transposase	transposase	A0A077SLN2	Escherichia_phage	1.9e-44	80.5
AWP40598.1\|22365_22791_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	3.4e-24	50.4
AWP40599.1\|22917_23568_-	SPI-2 type III secretion system effector cysteine hydrolase SpvD	NA	NA	NA	NA
AWP40600.1\|23829_24555_-	type III secretion system effector phosphothreonine lyase SpvC	NA	NA	NA	NA
AWP40601.1\|24835_26611_-	SPI-2 type III secretion system effector NAD(+)--protein-arginine ADP-ribosyltransferase SpvB	NA	NA	NA	NA
AWP40602.1\|26792_27560_-	virulence protein SpvA	NA	NA	NA	NA
AWP40603.1\|27733_27898_-	lysozyme	A0A0M4R365	Salmonella_phage	3.3e-12	63.0
AWP40604.1\|28071_28965_-	virulence genes transcriptional activator SpvR	NA	NA	NA	NA
AWP40605.1\|29572_30610_+\|transposase	IS630 family transposase	NA	NA	NA	NA
AWP40606.1\|30798_31824_-	AAA family ATPase	NA	NA	NA	NA
AWP40607.1\|31756_33421_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AWP40608.1\|33404_33965_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.5e-32	43.2
AWP40609.1\|34171_34912_-	carbonic anhydrase	NA	NA	NA	NA
AWP40610.1\|35566_36055_-	cytoplasmic protein	NA	NA	NA	NA
AWP40611.1\|36312_37428_+	hypothetical protein	NA	NA	NA	NA
AWP40636.1\|37513_37930_+	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9
AWP40612.1\|38113_38449_+	hypothetical protein	NA	NA	NA	NA
AWP40613.1\|38505_39111_+	DUF2913 domain-containing protein	NA	NA	NA	NA
AWP40614.1\|39107_40049_-\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	4.7e-74	54.7
AWP40615.1\|40463_41669_+	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
AWP40616.1\|41665_42643_+	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	6.7e-84	53.5
AWP40617.1\|42724_43999_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.9e-156	64.5
AWP40618.1\|43998_44421_-	peptidase	A0A1W6JNS2	Morganella_phage	2.0e-29	52.4
50429:50443	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028157

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028156

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection