CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029629	Staphylococcus aureus strain MOK063 chromosome, complete genome	7 crisprs	csa3,DEDDh,cas3,DinG,WYL	5	2	11	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029629_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029629_1

721800-721889

Orphan

Consensus_repeat	Method
TGATTGAGAAGTCAGTCGAAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029629_1

>merge|CP029629|1|721800-721889|CRISPRCasFinder
TGATTGAGAAGTCAGTCGAAAAACTATTGCAAAAGAAAAACGATTATGTATAATAAAGTTATAAATTGATTGAGAAGTCAGTCAAAAACG

>CP029629|1|1|721800-721889|CRISPRCasFinder
TGATTGAGAAGTCAGTCGAAAAAC	TATTGCAAAAGAAAAACGATTATGTATAATAAAGTTATAAAT
TGATTGAGAAGTCAGTCAAAAACG

Protein	Signature genes	Signature genes Name	Protein_function
CP029629.1\|AWQ30866.1\|722442_722598_+\|pathogenicity-island-protein	unknown	unknown	unknown
CP029629.1\|AWQ30863.1\|721058_721733_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
CP029629.1\|AWQ30860.1\|717827_718112_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP029629.1\|AWQ30873.1\|726843_727485_+\|pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|374630
CP029629.1\|AWQ30870.1\|723562_724432_+\|mobile-element-associated-protein	unknown	unknown	gnl\|CDD\|214926
CP029629.1\|AWQ30868.1\|722787_723171_+\|pathogenicity-island-protein	unknown	unknown	unknown
CP029629.1\|AWQ30857.1\|714803_715430_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP029629.1\|AWQ30859.1\|716909_717653_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP029629.1\|AWQ30872.1\|726466_726847_+\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ30855.1\|712927_713062_+\|delta-lysin-family-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|173213
CP029629.1\|AWQ30864.1\|721905_722124_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP029629.1\|AWQ30867.1\|722582_722786_+\|pathogenicity-island-protein	unknown	unknown	unknown
CP029629.1\|AWQ30858.1\|715625_716885_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
CP029629.1\|AWQ30871.1\|724445_726155_+\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
CP029629.1\|AWQ30861.1\|718187_719804_+\|molecular-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
CP029629.1\|AWQ30869.1\|723171_723498_+\|DUF1474-domain-containing-protein	unknown	unknown	gnl\|CDD\|369323
CP029629.1\|AWQ30865.1\|722128_722446_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
CP029629.1\|AWQ30854.1\|712122_712692_-\|accessory-gene-regulator-AgrB	unknown	unknown	gnl\|CDD\|214819
CP029629.1\|AWQ30856.1\|713657_714443_-\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
CP029629.1\|AWQ30862.1\|719872_721045_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189

Protein	Function_ID	Function_description	E-value
CP029629.1\|AWQ30863.1\|721058_721733_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.74531e-10
CP029629.1\|AWQ30860.1\|717827_718112_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP029629.1\|AWQ30873.1\|726843_727485_+\|pathogenicity-island-protein	gnl\|CDD\|374630	pfam16560, SAPI, Putative mobile pathogenicity island. SAPI is a family of putative Gram-positive mobile pathogenicity island proteins. SAPIs are responsible for many superantigen-related diseases in humans as they carry two or more superantigens.	4.9645e-115
CP029629.1\|AWQ30870.1\|723562_724432_+\|mobile-element-associated-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	2.31563e-15
CP029629.1\|AWQ30857.1\|714803_715430_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	5.71771e-116
CP029629.1\|AWQ30859.1\|716909_717653_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP029629.1\|AWQ30855.1\|712927_713062_+\|delta-lysin-family-phenol-soluble-modulin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP029629.1\|AWQ30864.1\|721905_722124_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	9.85461e-11
CP029629.1\|AWQ30858.1\|715625_716885_+\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	1.8239e-10
CP029629.1\|AWQ30871.1\|724445_726155_+\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	2.37856e-165
CP029629.1\|AWQ30861.1\|718187_719804_+\|molecular-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP029629.1\|AWQ30869.1\|723171_723498_+\|DUF1474-domain-containing-protein	gnl\|CDD\|369323	pfam07342, DUF1474, Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	3.47781e-22
CP029629.1\|AWQ30865.1\|722128_722446_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	5.89089e-17
CP029629.1\|AWQ30854.1\|712122_712692_-\|accessory-gene-regulator-AgrB	gnl\|CDD\|214819	smart00793, AgrB, Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein. AgrB is involved in the proteolytic processing of AgrD and may have both proteolytic enzyme activity and a transporter facilitating the export of the processed AgrD peptide.	4.40383e-47
CP029629.1\|AWQ30856.1\|713657_714443_-\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	7.8671e-127
CP029629.1\|AWQ30862.1\|719872_721045_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.07439e-48

>CP029629.1|AWQ30863.1|721058_721733_-|XRE-family-transcriptional-regulator
MIRNRLSELLSERGLKISRVAKDVKIARSSLTSMAQNDSEMIRYDAIDKLCSYLHISPSEFFEHNPINFDFTFDEEPNYKINDVFEGFEVTANITHAFSIENFDFEILVDVELDNRQKLNFDLDVSYKETEKITNSQHRFIFTIKNEDENIGLKKYVDSLSAGLKNLLFKKINQKLSGYVSEIIVKNIDDIEELFPNKGEKCTTLHKEILQTDSRLSSDLFKEY
>CP029629.1|AWQ30862.1|719872_721045_-|site-specific-integrase
MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGEYIAPSTSTFKQVANDWLKQYANEVKVSSVRAREKAIHHAIERFNYKPIQTINKHEYQRFVNDISAQYSKNYVDSIIASTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIYKKFLEKDELFQFLEIAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQILTPKTESSIGKIPVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDLF
>CP029629.1|AWQ30861.1|718187_719804_+|molecular-chaperone-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP029629.1|AWQ30860.1|717827_718112_+|co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP029629.1|AWQ30859.1|716909_717653_-|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP029629.1|AWQ30858.1|715625_716885_+|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATYTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQHGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP029629.1|AWQ30857.1|714803_715430_-|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP029629.1|AWQ30856.1|713657_714443_-|carbon-nitrogen-family-hydrolase
MKVQIYQLPIIFGDSSKNEAQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP029629.1|AWQ30855.1|712927_713062_+|delta-lysin-family-phenol-soluble-modulin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP029629.1|AWQ30854.1|712122_712692_-|accessory-gene-regulator-AgrB
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYILNIFLFTLITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMIILTVISLGVISVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIKEPFAQFIQLGIIIEAITLLPIFFIKEDLK
>CP029629.1|AWQ30864.1|721905_722124_+|XRE-family-transcriptional-regulator
MTILANTRKFKEAMFLKGFNLSDLSRETGVGISYLSQIINGKKIPSPKLAKKMAEVLQVEVNELFEFEVKEA
>CP029629.1|AWQ30865.1|722128_722446_+|helix-turn-helix-domain-containing-protein
MFNINIDEDEARELLEQAINARVDELAKEKYFMTYKELSNYLNLSKPTIEELLINNGMKYYMVGSTYRFKKSDVDEFMEQLTAHMNIQNNDFKQVNIKKLLEARQ
>CP029629.1|AWQ30866.1|722442_722598_+|pathogenicity-island-protein
MKMYLTYICLVSLLTILLLAISNMYVAFSVYGMMITYGFNLTGEITTCENK
>CP029629.1|AWQ30867.1|722582_722786_+|pathogenicity-island-protein
MRKQVIITKTVVGWYNIKDTQHNLMLNIPPKVFEHYFPDVSKDVQVACLEMDLSKITEIKNKKKVGS
>CP029629.1|AWQ30868.1|722787_723171_+|pathogenicity-island-protein
MKIKQKYQLSKVVKILEVVLYEEDKFQSDKDYHYQDKAFYEYALKLVHNGLFNILAELDFEDEVFLILDEVTMTLSDVMKETQHVYRYSVIDEKGEHKHTTDRKGHVIGMLEWALDYIVGNIEVEVL
>CP029629.1|AWQ30869.1|723171_723498_+|DUF1474-domain-containing-protein
MNWEINDLFSDLKLLKDRFEDLKDNHGWHFEELYPHEPNHNLNKDELIREGASYHERRIHNNQMFDLFHLYIEQFDKIIEKFHEIEKASSENFGEESDDAKNSIKVAE
>CP029629.1|AWQ30870.1|723562_724432_+|mobile-element-associated-protein
MNEIKLEYDTHVSVVHYESLDSRSFNSFSKPKWSKLVNKLSVPIEANYKYARGVAVYGDIKDGANDHGEIIKKHRNDVNVVYRDVIVLDYDEINDLKQLHEAISSALSNVAWFWHTSYSHRTEQARIRLYIPLNERISADDYRKYSKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIIDVDMLEQWSKELEQSNASPNVIGYTRRDSAYWRELSFGTTEGNRNNALASLVGHLLRCRVNDYIVYSYALLWGQFACKPPMKEQEINATFQSILNKHYNN
>CP029629.1|AWQ30871.1|724445_726155_+|DUF927-domain-containing-protein
METGKSDVLDKIEKINKKDSALQEIIPKGYEIEHHQCGVALYQLIPSKKEGEPDKKVFITNTIPQITERFEDIESNEVSFNMLFYDNKTPVNIAVSAEEISDSRQLLKLVNKKLDVTSSTSTKLVDYINVSKRYNPPLNVKVATRLGHVKGYFIYPYQEVMKDSNIKLFSNDKGFQKLIDSFQSKGTLEGYSKKVFGQIKDLPMVMVMLYASLGSVLLRGFGLQPFIVEISGSTSTGKTFTLNLVSSVWGTSDLITTWSSTQNSIESMASFLNSFPMFKDDTRNTHPKFVTSATYNFSSGESKSRSNINLTLNAKKEWRNILISTGESSIANMADEKAGVSARVVTLQDQPYPDNFDFTTLDKSFRENYGTLGLAFIKQYESKKDVYKNAFESYQRYFNQKGSNEIMQCLGRAFALLQVTGEVLNDIDGFEHDHFKIIEQAYDSMVKNNKTIDKPKQLLEELLQYLDANRNNIAGDGYSSVKNGDIKAIYKRDYLCILGQTVHDKLGHEMQTITGQWGKKGYLIKGEKDRLQKKVSHKNIKYRGFAINKEMLEELGFDFSNSHNPYSDY
>CP029629.1|AWQ30872.1|726466_726847_+|hypothetical-protein
MDKEQLKKYIYDYVKEYKEIPIYQLEDLFKEMNHDYIGRTSITHDKDENVVFWSGWNKITMFALIELVKSEQLDLVYRGSYVMRYLLDGRVPNLPLAICYPEDGQQTDVPSWVPMVLRINKEEKIK
>CP029629.1|AWQ30873.1|726843_727485_+|pathogenicity-island-protein
MNIETIVNQFETRAGTLLRYYTGLLESSRETHFAFKIYNDPFDMVYVMMKGKLYGHVYIQDCKVRQSFELASPKHTEGLIRSIERHYVGYELHDGKQLSISDMMASQLFEDEYFMYGLQTYAESNNSDVFEYLENGFDTDTLEGIQSSNTDVISNIEMLYQIATGINEPEPELVEGLRLVTEFVQDENATQEDYKALERKLNDLKASYYSLSK

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Crispr_ID: CP029629_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029629_2

1015997-1016081

Orphan

Consensus_repeat	Method
CCCACCCCAACTTGCATGGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029629_2

>merge|CP029629|2|1015997-1016081|CRISPRCasFinder
CCCACCCCAACTTGCATGGTCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCACCCCAACTTGCATTGTCTGTAGAA

>CP029629|2|2|1015997-1016081|CRISPRCasFinder
CCCACCCCAACTTGCATGGTCTGTAGAA	TTTCTTTTCGAAATTCTCTATGTTGGGGC
CCCACCCCAACTTGCATTGTCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029629.1\|AWQ31135.1\|1020953_1022183_+\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
CP029629.1\|AWQ31139.1\|1025437_1027195_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
CP029629.1\|AWQ31130.1\|1012982_1013672_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
CP029629.1\|AWQ31123.1\|1006577_1007072_+\|2-Cys-peroxiredoxin	unknown	unknown	gnl\|CDD\|179055
CP029629.1\|AWQ31138.1\|1024447_1025416_+\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
CP029629.1\|AWQ31133.1\|1016344_1017286_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
CP029629.1\|AWQ31142.1\|1032399_1033668_+\|isocitrate-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|180792
CP029629.1\|AWQ31124.1\|1007194_1008142_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
CP029629.1\|AWQ31129.1\|1011752_1012808_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
CP029629.1\|AWQ31140.1\|1029520_1030882_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
CP029629.1\|AWQ31128.1\|1011560_1011659_+\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ31136.1\|1022377_1023235_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
CP029629.1\|AWQ31126.1\|1009677_1010178_-\|universal-stress-protein-UspA	unknown	unknown	gnl\|CDD\|366180
CP029629.1\|AWQ31137.1\|1023234_1024179_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
CP029629.1\|AWQ31125.1\|1008229_1009432_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
CP029629.1\|AWQ31134.1\|1017306_1020504_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
CP029629.1\|AWQ31141.1\|1031229_1032351_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|184468
CP029629.1\|AWQ31132.1\|1014594_1015893_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226594
CP029629.1\|AWQ31127.1\|1010318_1011437_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
CP029629.1\|AWQ31131.1\|1013976_1014390_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180

Protein	Function_ID	Function_description	E-value
CP029629.1\|AWQ31135.1\|1020953_1022183_+\|NAD-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
CP029629.1\|AWQ31139.1\|1025437_1027195_+\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
CP029629.1\|AWQ31123.1\|1006577_1007072_+\|2-Cys-peroxiredoxin	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	8.69777e-99
CP029629.1\|AWQ31138.1\|1024447_1025416_+\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
CP029629.1\|AWQ31133.1\|1016344_1017286_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	2.09048e-98
CP029629.1\|AWQ31142.1\|1032399_1033668_+\|isocitrate-dehydrogenase-(NADP(+))	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
CP029629.1\|AWQ31129.1\|1011752_1012808_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	9.25455e-126
CP029629.1\|AWQ31130.1\|1012982_1013672_+\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	1.10209e-133
CP029629.1\|AWQ31140.1\|1029520_1030882_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
CP029629.1\|AWQ31124.1\|1007194_1008142_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	1.04193e-56
CP029629.1\|AWQ31136.1\|1022377_1023235_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
CP029629.1\|AWQ31126.1\|1009677_1010178_-\|universal-stress-protein-UspA	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36
CP029629.1\|AWQ31137.1\|1023234_1024179_+\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
CP029629.1\|AWQ31125.1\|1008229_1009432_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
CP029629.1\|AWQ31134.1\|1017306_1020504_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
CP029629.1\|AWQ31141.1\|1031229_1032351_+\|citrate-synthase	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
CP029629.1\|AWQ31132.1\|1014594_1015893_+\|CBS-domain-containing-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
CP029629.1\|AWQ31127.1\|1010318_1011437_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
CP029629.1\|AWQ31131.1\|1013976_1014390_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	7.63781e-19

>CP029629.1|AWQ31132.1|1014594_1015893_+|CBS-domain-containing-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNAMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>CP029629.1|AWQ31131.1|1013976_1014390_-|universal-stress-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERNKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>CP029629.1|AWQ31130.1|1012982_1013672_+|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKKTGATVIGSAEMADYLSSYHGVENVHGMNIGGKVNFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>CP029629.1|AWQ31129.1|1011752_1012808_-|aminopeptidase-P-family-protein
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLTSGFNVNSFGDVDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPSKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIILEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGYEVLTHYEK
>CP029629.1|AWQ31128.1|1011560_1011659_+|hypothetical-protein
MNDIDLIHYMLLMNIPAYVFLACLLHIAFRLG
>CP029629.1|AWQ31127.1|1010318_1011437_+|alanine-dehydrogenase
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEEKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>CP029629.1|AWQ31126.1|1009677_1010178_-|universal-stress-protein-UspA
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>CP029629.1|AWQ31125.1|1008229_1009432_+|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLIERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGIYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>CP029629.1|AWQ31124.1|1007194_1008142_+|class-I-SAM-dependent-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEIDIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINVLKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>CP029629.1|AWQ31123.1|1006577_1007072_+|2-Cys-peroxiredoxin
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>CP029629.1|AWQ31133.1|1016344_1017286_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGRKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVDSWDEFEQLATALRTKLN
>CP029629.1|AWQ31134.1|1017306_1020504_+|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVDALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTVETVVLAKNNDGLKDLYQLSSEIKMNALEHVSFELLKRFSNNMIIIFKKVGDQHRDIVQVFETHNDTYMDHLSISIQGRKHVWIQDVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEVNQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYETPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDDQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKKTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQKGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVMLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>CP029629.1|AWQ31135.1|1020953_1022183_+|NAD-dependent-malic-enzyme
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>CP029629.1|AWQ31136.1|1022377_1023235_+|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>CP029629.1|AWQ31137.1|1023234_1024179_+|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDVEQQALAIKSAFVAQLDSLESLSRDEIANDRFEKFRNIGSYIE
>CP029629.1|AWQ31138.1|1024447_1025416_+|ATP-dependent-6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>CP029629.1|AWQ31139.1|1025437_1027195_+|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIKENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSTIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>CP029629.1|AWQ31140.1|1029520_1030882_-|amino-acid-permease
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>CP029629.1|AWQ31141.1|1031229_1032351_+|citrate-synthase
MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>CP029629.1|AWQ31142.1|1032399_1033668_+|isocitrate-dehydrogenase-(NADP(+))
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALSEFGDQVFTWQQYDEIVEKEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK

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Crispr_ID: CP029629_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029629_4

1924028-1924109

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029629_4

>merge|CP029629|4|1924028-1924109|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGGG

>CP029629|4|4|1924028-1924109|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029629.1\|AWQ31992.1\|1925269_1925650_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
CP029629.1\|AWQ31999.1\|1929733_1930351_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
CP029629.1\|AWQ31990.1\|1924212_1925091_-\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
CP029629.1\|AWQ31987.1\|1922627_1922924_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP029629.1\|AWQ31988.1\|1922916_1923303_-\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
CP029629.1\|AWQ31981.1\|1917103_1917865_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP029629.1\|AWQ31997.1\|1928263_1928686_+\|organic-hydroperoxide-reductase-OsmC/OhrA	unknown	unknown	gnl\|CDD\|274649
CP029629.1\|AWQ31984.1\|1919825_1920647_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
CP029629.1\|AWQ31996.1\|1927399_1928116_-\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP029629.1\|AWQ31995.1\|1926777_1927317_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
CP029629.1\|AWQ31983.1\|1919277_1919472_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
CP029629.1\|AWQ31982.1\|1918192_1919044_+\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
CP029629.1\|AWQ31980.1\|1915697_1917005_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP029629.1\|AWQ31993.1\|1925807_1926164_-\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
CP029629.1\|AWQ31994.1\|1926307_1926628_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP029629.1\|AWQ31986.1\|1921352_1922378_-\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP029629.1\|AWQ31989.1\|1923512_1923626_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ31998.1\|1929084_1929579_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
CP029629.1\|AWQ31985.1\|1920664_1921360_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP029629.1\|AWQ31991.1\|1925092_1925206_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029629.1\|AWQ31992.1\|1925269_1925650_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.28962e-69
CP029629.1\|AWQ31981.1\|1917103_1917865_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP029629.1\|AWQ31987.1\|1922627_1922924_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP029629.1\|AWQ31988.1\|1922916_1923303_-\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP029629.1\|AWQ31990.1\|1924212_1925091_-\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.72543e-74
CP029629.1\|AWQ31997.1\|1928263_1928686_+\|organic-hydroperoxide-reductase-OsmC/OhrA	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP029629.1\|AWQ31984.1\|1919825_1920647_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
CP029629.1\|AWQ31996.1\|1927399_1928116_-\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	5.95463e-148
CP029629.1\|AWQ31995.1\|1926777_1927317_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP029629.1\|AWQ31983.1\|1919277_1919472_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	7.31744e-07
CP029629.1\|AWQ31982.1\|1918192_1919044_+\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
CP029629.1\|AWQ31980.1\|1915697_1917005_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	6.84378e-136
CP029629.1\|AWQ31993.1\|1925807_1926164_-\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	6.79692e-56
CP029629.1\|AWQ31994.1\|1926307_1926628_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
CP029629.1\|AWQ31986.1\|1921352_1922378_-\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
CP029629.1\|AWQ31999.1\|1929733_1930351_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	1.40612e-61
CP029629.1\|AWQ31998.1\|1929084_1929579_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	3.90374e-46
CP029629.1\|AWQ31985.1\|1920664_1921360_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100

>CP029629.1|AWQ31989.1|1923512_1923626_-|hypothetical-protein
MLGPRQLAHYCKLTYHQLLCWGPAIIEKFVIGVFSFG
>CP029629.1|AWQ31988.1|1922916_1923303_-|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP029629.1|AWQ31987.1|1922627_1922924_-|thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP029629.1|AWQ31986.1|1921352_1922378_-|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP029629.1|AWQ31985.1|1920664_1921360_-|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP029629.1|AWQ31984.1|1919825_1920647_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP029629.1|AWQ31983.1|1919277_1919472_-|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKSNKGE
>CP029629.1|AWQ31982.1|1918192_1919044_+|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP029629.1|AWQ31981.1|1917103_1917865_-|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP029629.1|AWQ31980.1|1915697_1917005_-|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLIGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP029629.1|AWQ31990.1|1924212_1925091_-|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMKEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDNLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQEHLKSLDADNEDIPFSGAFSIKFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP029629.1|AWQ31991.1|1925092_1925206_-|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP029629.1|AWQ31992.1|1925269_1925650_-|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSKMIGE
>CP029629.1|AWQ31993.1|1925807_1926164_-|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKIIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP029629.1|AWQ31994.1|1926307_1926628_+|thioredoxin
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP029629.1|AWQ31995.1|1926777_1927317_-|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP029629.1|AWQ31996.1|1927399_1928116_-|type-I-3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP029629.1|AWQ31997.1|1928263_1928686_+|organic-hydroperoxide-reductase-OsmC/OhrA
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP029629.1|AWQ31998.1|1929084_1929579_+|GNAT-family-N-acetyltransferase
MIEIKTLTNNNFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP029629.1|AWQ31999.1|1929733_1930351_+|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLIF

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Crispr_ID: CP029629_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029629_5

1967137-1967279

Unclear

Consensus_repeat	Method
ATGCAAGTTGGCGGGGCCCCAACACAGAGAATTACGAAAAG	PILER-CR
AATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029629_5

>merge|CP029629|5|1967137-1967279|PILER-CR,CRISPRCasFinder
GGGGCCCCAACACAGAGAAATTGGATTTCCAATTTCTACAGACAATGCAAGTTGGGGTGTGGGCCCCAACACAGAGAATTTCGAAAAGAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTTACGAAAAG

>CP029629|5|1|1967137-1967279|PILER-CR
GGGGCCCCAACACAGAGAAATTGGATTTCCAATTTCTACAGACAATGCAAGT	TGGGGTGTGGGCCCCAACACAGAGA
ATTTCGAAAAGAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAG	AAGCTTACGA
AAAG

>CP029629|5|5|1967167-1967249|CRISPRCasFinder
AATTTCTACAGACAATGCAAGTTGG	GGTGTGGGCCCCAACACAGAGAATTTCGAAAAG
AATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029629.1\|AWQ32032.1\|1962782_1963370_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP029629.1\|AWQ32040.1\|1971453_1972386_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP029629.1\|AWQ32029.1\|1960025_1960160_+\|nitrogen-fixation-protein-NifR	unknown	unknown	unknown
CP029629.1\|AWQ32035.1\|1965989_1966901_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
CP029629.1\|AWQ32039.1\|1970608_1971448_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029629.1\|AWQ32028.1\|1958588_1959602_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
CP029629.1\|AWQ32038.1\|1970115_1970601_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP029629.1\|AWQ32030.1\|1960305_1960935_-\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750
CP029629.1\|AWQ32041.1\|1973005_1975852_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
CP029629.1\|AWQ32034.1\|1964997_1965993_-\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP029629.1\|AWQ32037.1\|1968668_1970108_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
CP029629.1\|AWQ32045.1\|1979170_1980010_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
CP029629.1\|AWQ32031.1\|1961637_1962540_+\|epimerase	unknown	unknown	gnl\|CDD\|224015
CP029629.1\|AWQ32042.1\|1975859_1977845_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
CP029629.1\|AWQ32026.1\|1956196_1957387_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP029629.1\|AWQ32043.1\|1978113_1978350_-\|DUF2198-domain-containing-protein	unknown	unknown	gnl\|CDD\|227234
CP029629.1\|AWQ32033.1\|1963942_1964887_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP029629.1\|AWQ32027.1\|1957525_1958536_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP029629.1\|AWQ32044.1\|1978346_1978997_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
CP029629.1\|AWQ32036.1\|1967666_1968602_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540

Protein	Function_ID	Function_description	E-value
CP029629.1\|AWQ32032.1\|1962782_1963370_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029629.1\|AWQ32040.1\|1971453_1972386_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029629.1\|AWQ32035.1\|1965989_1966901_-\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	1.52033e-168
CP029629.1\|AWQ32039.1\|1970608_1971448_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	4.82832e-120
CP029629.1\|AWQ32028.1\|1958588_1959602_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP029629.1\|AWQ32038.1\|1970115_1970601_-\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP029629.1\|AWQ32030.1\|1960305_1960935_-\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.80381e-05
CP029629.1\|AWQ32041.1\|1973005_1975852_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029629.1\|AWQ32034.1\|1964997_1965993_-\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029629.1\|AWQ32037.1\|1968668_1970108_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.98898e-05
CP029629.1\|AWQ32045.1\|1979170_1980010_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
CP029629.1\|AWQ32031.1\|1961637_1962540_+\|epimerase	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP029629.1\|AWQ32042.1\|1975859_1977845_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029629.1\|AWQ32026.1\|1956196_1957387_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP029629.1\|AWQ32043.1\|1978113_1978350_-\|DUF2198-domain-containing-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP029629.1\|AWQ32033.1\|1963942_1964887_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029629.1\|AWQ32027.1\|1957525_1958536_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP029629.1\|AWQ32044.1\|1978346_1978997_-\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029629.1\|AWQ32036.1\|1967666_1968602_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154

>CP029629.1|AWQ32035.1|1965989_1966901_-|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLYKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029629.1|AWQ32034.1|1964997_1965993_-|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029629.1|AWQ32033.1|1963942_1964887_-|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029629.1|AWQ32032.1|1962782_1963370_-|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029629.1|AWQ32031.1|1961637_1962540_+|epimerase
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP029629.1|AWQ32030.1|1960305_1960935_-|DUF4887-domain-containing-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDNASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>CP029629.1|AWQ32029.1|1960025_1960160_+|nitrogen-fixation-protein-NifR
MCKLGCGPQHSEIGSSQFLQAMEVGVGRRNKFCENIISVPPHSK
>CP029629.1|AWQ32028.1|1958588_1959602_-|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP029629.1|AWQ32027.1|1957525_1958536_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVIECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP029629.1|AWQ32026.1|1956196_1957387_-|phosphoglycerate-kinase
MAKKIVSDLNLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>CP029629.1|AWQ32036.1|1967666_1968602_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029629.1|AWQ32037.1|1968668_1970108_-|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPVDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029629.1|AWQ32038.1|1970115_1970601_-|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029629.1|AWQ32039.1|1970608_1971448_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYVENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEKLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029629.1|AWQ32040.1|1971453_1972386_-|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029629.1|AWQ32041.1|1973005_1975852_-|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSSGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029629.1|AWQ32042.1|1975859_1977845_-|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIEEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQIRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029629.1|AWQ32043.1|1978113_1978350_-|DUF2198-domain-containing-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029629.1|AWQ32044.1|1978346_1978997_-|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029629.1|AWQ32045.1|1979170_1980010_-|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKTPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH

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Crispr_ID: CP029629_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029629_6

2066560-2066658

Orphan

Consensus_repeat	Method
CCCCTTTTAATTTATTAATTAGGGGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029629_6

>merge|CP029629|6|2066560-2066658|CRISPRCasFinder
CCCCTTTTAATTTATTAATTAGGGGCTCTTATGCAGTTGGTGCGTTAGCATCCAACTGTATTCCTTTGTCCCCTTTTAATTTATTAATTAGGGGCTCTT

>CP029629|6|6|2066560-2066658|CRISPRCasFinder
CCCCTTTTAATTTATTAATTAGGGGCTCTT	ATGCAGTTGGTGCGTTAGCATCCAACTGTATTCCTTTGT
CCCCTTTTAATTTATTAATTAGGGGCTCTT

Protein	Signature genes	Signature genes Name	Protein_function
CP029629.1\|AWQ32129.1\|2063478_2063922_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029629.1\|AWQ32127.1\|2062573_2062885_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32131.1\|2064836_2065325_-\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|225395
CP029629.1\|AWQ32140.1\|2074457_2075255_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
CP029629.1\|AWQ32128.1\|2063022_2063412_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32133.1\|2066742_2067609_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP029629.1\|AWQ32123.1\|2060155_2060839_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
CP029629.1\|AWQ32138.1\|2070605_2072756_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
CP029629.1\|AWQ32139.1\|2073452_2074097_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223742
CP029629.1\|AWQ32911.1\|2070100_2070460_-\|HTH-type-transcriptional-regulator-SarX	unknown	unknown	gnl\|CDD\|130944
CP029629.1\|AWQ32141.1\|2075842_2076850_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
CP029629.1\|AWQ32130.1\|2064048_2064738_+\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32135.1\|2068513_2068630_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32125.1\|2061301_2061868_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
CP029629.1\|AWQ32132.1\|2065321_2066542_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341024
CP029629.1\|AWQ32124.1\|2060841_2061300_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
CP029629.1\|AWQ32134.1\|2067724_2068369_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188
CP029629.1\|AWQ32137.1\|2069194_2069911_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
CP029629.1\|AWQ32126.1\|2061963_2062506_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
CP029629.1\|AWQ32136.1\|2068721_2069195_-\|cupin	unknown	unknown	gnl\|CDD\|226072

Protein	Function_ID	Function_description	E-value
CP029629.1\|AWQ32129.1\|2063478_2063922_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.77401e-13
CP029629.1\|AWQ32138.1\|2070605_2072756_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.12683e-20
CP029629.1\|AWQ32125.1\|2061301_2061868_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
CP029629.1\|AWQ32140.1\|2074457_2075255_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.44834e-40
CP029629.1\|AWQ32137.1\|2069194_2069911_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
CP029629.1\|AWQ32133.1\|2066742_2067609_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.04787e-39
CP029629.1\|AWQ32123.1\|2060155_2060839_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000491798
CP029629.1\|AWQ32141.1\|2075842_2076850_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	1.90489e-104
CP029629.1\|AWQ32911.1\|2070100_2070460_-\|HTH-type-transcriptional-regulator-SarX	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.54609e-22
CP029629.1\|AWQ32131.1\|2064836_2065325_-\|DUF456-domain-containing-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	4.76789e-44
CP029629.1\|AWQ32132.1\|2065321_2066542_-\|MFS-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.30756e-101
CP029629.1\|AWQ32124.1\|2060841_2061300_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	1.18273e-77
CP029629.1\|AWQ32134.1\|2067724_2068369_-\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	1.46792e-91
CP029629.1\|AWQ32139.1\|2073452_2074097_-\|hypothetical-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	1.16188e-32
CP029629.1\|AWQ32126.1\|2061963_2062506_-\|N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.26713e-28
CP029629.1\|AWQ32136.1\|2068721_2069195_-\|cupin	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	7.22926e-75

>CP029629.1|AWQ32132.1|2065321_2066542_-|MFS-transporter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIILALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLHTRTLLIYGAIFGGLFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSAASIMLGMILIFFTKNQKITKEDVIST
>CP029629.1|AWQ32131.1|2064836_2065325_-|DUF456-domain-containing-protein
MTIILWLLIIAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>CP029629.1|AWQ32130.1|2064048_2064738_+|hypothetical-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKNGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIERNISKKHSHTFL
>CP029629.1|AWQ32129.1|2063478_2063922_-|GNAT-family-N-acetyltransferase
MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKNNLPMISLNKDLGYQVSHVKMYKDID
>CP029629.1|AWQ32128.1|2063022_2063412_-|hypothetical-protein
MKKLIISIMAVMLFLTGCGKSQEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDEDKNKDKDKEASQDKQSKDQIKSSDKDNHKKPTSTDKDQKANDKHQS
>CP029629.1|AWQ32127.1|2062573_2062885_-|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSKQTAI
>CP029629.1|AWQ32126.1|2061963_2062506_-|N-acetyltransferase
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKETHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWGKGLATEGAKATLKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>CP029629.1|AWQ32125.1|2061301_2061868_+|TIGR00730-family-Rossman-fold-protein
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>CP029629.1|AWQ32124.1|2060841_2061300_+|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVVTQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLKVIHRIKELD
>CP029629.1|AWQ32123.1|2060155_2060839_+|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
>CP029629.1|AWQ32133.1|2066742_2067609_-|LysR-family-transcriptional-regulator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
>CP029629.1|AWQ32134.1|2067724_2068369_-|DUF402-domain-containing-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNHQKPQNKTNIEKSKQIKPKQYNQTKNHQQQKKN
>CP029629.1|AWQ32135.1|2068513_2068630_-|hypothetical-protein
MLQLFLMKIALNDFENDKSVLFIFLKNHFYEEMCVLSN
>CP029629.1|AWQ32136.1|2068721_2069195_-|cupin
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>CP029629.1|AWQ32137.1|2069194_2069911_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>CP029629.1|AWQ32911.1|2070100_2070460_-|HTH-type-transcriptional-regulator-SarX
MNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNNDDISKFNALFEDVEQFLNI
>CP029629.1|AWQ32138.1|2070605_2072756_-|AraC-family-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGFTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADIRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKYNKCLMLKPEPLVGKMVQEVKEIILNYIEHYKNHLTDVIHIDEDKFETPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFTIIKTIIESDLKIAFNINDIETTYFVEEAFMSVFRQISPNELSNHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFEKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKERDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQAFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIVIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSDNSLNINVTFNALYIIKIGKK
>CP029629.1|AWQ32139.1|2073452_2074097_-|hypothetical-protein
MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASLIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>CP029629.1|AWQ32140.1|2074457_2075255_+|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNSSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>CP029629.1|AWQ32141.1|2075842_2076850_-|inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISALLACLLFYILNLFF

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Crispr_ID: CP029629_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029629_7

2129323-2129416

Orphan

Consensus_repeat	Method
GGCTTTTATGCAGTTGCTGCACAAACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029629_7

>merge|CP029629|7|2129323-2129416|CRISPRCasFinder
GGCTTTTATGCAGTTGCTGCACAAACAACTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGGGGCTCTTATGCAGTTGCTGCACAAACAA

>CP029629|7|7|2129323-2129416|CRISPRCasFinder
GGCTTTTATGCAGTTGCTGCACAAACAA	CTGTATTCCTTTACTCCCCTTGAGCTTTAGCGATTAGG
GGCTCTTATGCAGTTGCTGCACAAACAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029629.1\|AWQ32199.1\|2136242_2136719_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029629.1\|AWQ32201.1\|2137634_2138573_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
CP029629.1\|AWQ32187.1\|2120692_2121622_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225778
CP029629.1\|AWQ32914.1\|2132158_2132542_-\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|226896
CP029629.1\|AWQ32913.1\|2128327_2129155_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
CP029629.1\|AWQ32912.1\|2127229_2128180_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP029629.1\|AWQ32189.1\|2123194_2123983_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029629.1\|AWQ32915.1\|2134358_2134880_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039
CP029629.1\|AWQ32197.1\|2132849_2133860_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|181842
CP029629.1\|AWQ32193.1\|2126455_2127175_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
CP029629.1\|AWQ32188.1\|2122569_2122944_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
CP029629.1\|AWQ32200.1\|2136887_2137424_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223728
CP029629.1\|AWQ32198.1\|2134907_2136203_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
CP029629.1\|AWQ32190.1\|2124151_2124868_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32191.1\|2125029_2125536_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32195.1\|2130500_2132162_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP029629.1\|AWQ32196.1\|2132667_2132775_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32186.1\|2120274_2120499_+\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
CP029629.1\|AWQ32192.1\|2125671_2126472_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029629.1\|AWQ32194.1\|2129531_2130167_-\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140

Protein	Function_ID	Function_description	E-value
CP029629.1\|AWQ32201.1\|2137634_2138573_-\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	7.3194e-168
CP029629.1\|AWQ32187.1\|2120692_2121622_+\|hypothetical-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	8.35021e-36
CP029629.1\|AWQ32914.1\|2132158_2132542_-\|DUF1934-domain-containing-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	9.50091e-54
CP029629.1\|AWQ32913.1\|2128327_2129155_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.32108e-72
CP029629.1\|AWQ32912.1\|2127229_2128180_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.19191e-48
CP029629.1\|AWQ32189.1\|2123194_2123983_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.22673e-34
CP029629.1\|AWQ32915.1\|2134358_2134880_-\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
CP029629.1\|AWQ32199.1\|2136242_2136719_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
CP029629.1\|AWQ32193.1\|2126455_2127175_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
CP029629.1\|AWQ32188.1\|2122569_2122944_+\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
CP029629.1\|AWQ32200.1\|2136887_2137424_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	4.75153e-26
CP029629.1\|AWQ32198.1\|2134907_2136203_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
CP029629.1\|AWQ32197.1\|2132849_2133860_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
CP029629.1\|AWQ32195.1\|2130500_2132162_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
CP029629.1\|AWQ32186.1\|2120274_2120499_+\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	5.21775e-14
CP029629.1\|AWQ32192.1\|2125671_2126472_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17592e-26
CP029629.1\|AWQ32194.1\|2129531_2130167_-\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90

>CP029629.1|AWQ32913.1|2128327_2129155_-|ABC-transporter-substrate-binding-protein
MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>CP029629.1|AWQ32912.1|2127229_2128180_-|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>CP029629.1|AWQ32193.1|2126455_2127175_-|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>CP029629.1|AWQ32192.1|2125671_2126472_-|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>CP029629.1|AWQ32191.1|2125029_2125536_-|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>CP029629.1|AWQ32190.1|2124151_2124868_-|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>CP029629.1|AWQ32189.1|2123194_2123983_-|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDQVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>CP029629.1|AWQ32188.1|2122569_2122944_+|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>CP029629.1|AWQ32187.1|2120692_2121622_+|hypothetical-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPKVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTLGLFGATIHDFNLIKAIGVLLLIIGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>CP029629.1|AWQ32186.1|2120274_2120499_+|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVVRDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK
>CP029629.1|AWQ32194.1|2129531_2130167_-|endonuclease-III-domain-containing-protein
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>CP029629.1|AWQ32195.1|2130500_2132162_-|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>CP029629.1|AWQ32914.1|2132158_2132542_-|DUF1934-domain-containing-protein
MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>CP029629.1|AWQ32196.1|2132667_2132775_-|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>CP029629.1|AWQ32197.1|2132849_2133860_-|alcohol-dehydrogenase-AdhP
MRAAVVTKDHKVNIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>CP029629.1|AWQ32915.1|2134358_2134880_-|hypothetical-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>CP029629.1|AWQ32198.1|2134907_2136203_-|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>CP029629.1|AWQ32199.1|2136242_2136719_-|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKEF
>CP029629.1|AWQ32200.1|2136887_2137424_-|NAD(P)H-dependent-oxidoreductase
MITVLFGGSRPNGNTAQLTKFALRDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>CP029629.1|AWQ32201.1|2137634_2138573_-|aldo/keto-reductase
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED

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Crispr_ID: CP029629_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029629_8

2650398-2650479

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029629_8

>merge|CP029629|8|2650398-2650479|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACACAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>CP029629|8|8|2650398-2650479|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACACAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029629.1\|AWQ32686.1\|2642599_2644411_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
CP029629.1\|AWQ32694.1\|2651818_2652118_-\|DUF2316-domain-containing-protein	unknown	unknown	gnl\|CDD\|226806
CP029629.1\|AWQ32685.1\|2641471_2642239_-\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
CP029629.1\|AWQ32697.1\|2653590_2654601_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|225070
CP029629.1\|AWQ32700.1\|2656584_2657925_-\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|223447
CP029629.1\|AWQ32688.1\|2645686_2646388_-\|transglycosylase-IsaA	unknown	unknown	gnl\|CDD\|381607
CP029629.1\|AWQ32691.1\|2649949_2650180_+\|DUF896-domain-containing-protein	unknown	unknown	gnl\|CDD\|226677
CP029629.1\|AWQ32690.1\|2648178_2648307_-\|hypothetical-protein	unknown	unknown	unknown
CP029629.1\|AWQ32938.1\|2648461_2649031_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP029629.1\|AWQ32687.1\|2644922_2645411_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
CP029629.1\|AWQ32698.1\|2654620_2655451_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP029629.1\|AWQ32937.1\|2640808_2641297_-\|glycosyl-4,4'-diaponeurosporenoate-acyltransferase	unknown	unknown	unknown
CP029629.1\|AWQ32695.1\|2652249_2652807_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP029629.1\|AWQ32701.1\|2657918_2659025_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|379355
CP029629.1\|AWQ32684.1\|2639322_2640816_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
CP029629.1\|AWQ32696.1\|2652799_2653504_+\|KR-domain-containing-protein	unknown	unknown	gnl\|CDD\|187585
CP029629.1\|AWQ32693.1\|2650977_2651799_-\|NmrA/HSCARG-family-protein	unknown	unknown	gnl\|CDD\|187561
CP029629.1\|AWQ32689.1\|2646996_2648052_-\|PTS-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226167
CP029629.1\|AWQ32699.1\|2655597_2656488_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
CP029629.1\|AWQ32692.1\|2650583_2650961_-\|glyoxalase	unknown	unknown	gnl\|CDD\|226134

Protein	Function_ID	Function_description	E-value
CP029629.1\|AWQ32686.1\|2642599_2644411_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	8.15616e-84
CP029629.1\|AWQ32685.1\|2641471_2642239_-\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.0489e-31
CP029629.1\|AWQ32697.1\|2653590_2654601_+\|amidohydrolase	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	7.39377e-78
CP029629.1\|AWQ32700.1\|2656584_2657925_-\|ferrous-iron-transporter-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	1.90855e-93
CP029629.1\|AWQ32688.1\|2645686_2646388_-\|transglycosylase-IsaA	gnl\|CDD\|381607	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins. Resuscitation-promoting factor (RPF) proteins, found in various (G+C)-rich Gram-positive bacteria, act to reactivate cultures from stationary phase. This protein shares elements of the structural core of lysozyme and related proteins. Furthermore, it shares a conserved active site glutamate which is required for activity, and has a polysaccharide binding cleft that corresponds to the peptidoglycan binding cleft of lysozyme. Muralytic activity of Rpf in Micrococcus luteus correlates with resuscitation, supporting a mechanism dependent on cleavage of peptidoglycan by RPF.	3.60255e-06
CP029629.1\|AWQ32691.1\|2649949_2650180_+\|DUF896-domain-containing-protein	gnl\|CDD\|226677	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown].	6.01061e-31
CP029629.1\|AWQ32684.1\|2639322_2640816_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	5.98974e-132
CP029629.1\|AWQ32694.1\|2651818_2652118_-\|DUF2316-domain-containing-protein	gnl\|CDD\|226806	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown].	1.06282e-39
CP029629.1\|AWQ32687.1\|2644922_2645411_-\|N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.6785e-11
CP029629.1\|AWQ32698.1\|2654620_2655451_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.6811e-18
CP029629.1\|AWQ32695.1\|2652249_2652807_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.50396e-13
CP029629.1\|AWQ32701.1\|2657918_2659025_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	4.45347e-126
CP029629.1\|AWQ32938.1\|2648461_2649031_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.43347e-07
CP029629.1\|AWQ32696.1\|2652799_2653504_+\|KR-domain-containing-protein	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.08524e-67
CP029629.1\|AWQ32693.1\|2650977_2651799_-\|NmrA/HSCARG-family-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.56436e-84
CP029629.1\|AWQ32689.1\|2646996_2648052_-\|PTS-transporter-subunit-IIC	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	5.38046e-117
CP029629.1\|AWQ32699.1\|2655597_2656488_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	2.17569e-76
CP029629.1\|AWQ32692.1\|2650583_2650961_-\|glyoxalase	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.45544e-58

>CP029629.1|AWQ32691.1|2649949_2650180_+|DUF896-domain-containing-protein
MKILDRINELANKEKVQPLTVAEKQEQHALRQDYLSMIRGQVLTTFSTIKVVDPIGQDVTPDKVYDLRQQYGYIQN
>CP029629.1|AWQ32938.1|2648461_2649031_+|TetR/AcrR-family-transcriptional-regulator
MMESKSIDPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSVTILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELEDIFAIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQETADVFIDRNLPFLIHHIAHF
>CP029629.1|AWQ32690.1|2648178_2648307_-|hypothetical-protein
MDFKNEDKIKVYCNNMFEKLPISLSKNSEFCDILFFIVLSYR
>CP029629.1|AWQ32689.1|2646996_2648052_-|PTS-transporter-subunit-IIC
MTSIKTITPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMDYHPIFKTLLGVVVAIQFTVPALIGALVAMKFDLSPLAIAVVASAAYVGSGAAQFKNGAWMITGIGDLINTMITAAIAVLFILLIQHRVGSMALIVFPTVVGGISGAIGVLILPYTKMITTAIGNMVNGFTELQPIVMSILISMVFSLIIISPLSTVAIAFAIGITGLAAGSASIGISATEAVLIIGTSKVNRLGVPLSVFFGGVKMMIPNMVKYPILMLPILTTAIVSGLVSALVGIHGTKESAGFGFIGMVGPINAFKFMEVDSAWLSVLLIVVAFFVVPFVTAWLADIIYRKVFRLYTNDIFKFMG
>CP029629.1|AWQ32688.1|2645686_2646388_-|transglycosylase-IsaA
MKKTIMASSLAVALGVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNAAPIKDGAYDIHFVKDGFQYNFTSNGTTWSWSYEAANGQTAGFSNVAGADYTTSYNQGSNVQSVSYNAQSSNSNVEAVSAPTYHNYSTSTTSSSVRLSNGNTAGATGSSAAQIMAQRTGVSASTWAAIIARESNGQVNAYNPSGASGLFQTMPGWGPTNTVDQQINAAVKAYKAQGLGAWGF
>CP029629.1|AWQ32687.1|2644922_2645411_-|N-acetyltransferase
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNNGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
>CP029629.1|AWQ32686.1|2642599_2644411_-|acetyltransferase
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLITSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAAIFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQTLFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIVVSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSMKPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPIRKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTMKKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLVDATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEGRINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHATNKK
>CP029629.1|AWQ32685.1|2641471_2642239_-|CHAP-domain-containing-protein
MKKIVTATIATAGLATIAFAGHDAQAVEQNNNGYNSNDAQSYSYTYTIDAQGNYHYTWTGNWNPSQLTQNNTYYYNNYNTYSYNNASYNNYYNHSYQYNNYTNNSQTATNNYYTGGSGASYSTTSNNVHVTTTAAPSSNGRSISNGYASGSNLYTSGQCTYYVFDRVGGKIGSTWGNASNWANAAASSGYTVNNTPKVGAIMQTTQGYYGHVAYVEGVNSNGSVRVSEMNYGHGAGVVTSRTISANQAGSYNFIH
>CP029629.1|AWQ32937.1|2640808_2641297_-|glycosyl-4,4'-diaponeurosporenoate-acyltransferase
MKKYIKTAFFCSMYWLIVQLNIANLGTRIPDKYFRQKYIIFKSFNFEKHGKFWNKWFYVRKWKHKILDGHQLNQNIYDQRHLMTINTDEIEKMIIETKRAELIHWISILPVIIFNKGPRLVKYINIFYAMIANVPIIIVQRYNRPRLTQLLRILKRRGERHD
>CP029629.1|AWQ32684.1|2639322_2640816_-|NAD(P)/FAD-dependent-oxidoreductase
MTKHIIVIGGGLGGISAAIRMAQSGYSVSLYEQNNHIGGKVNRHESDGFGFDLGPSILTMPYIFEKLFEYSKKQMSDYVTIKRLPHQWRSFFPDGTTIDLYEGIKETGQHNVILSKQDIEELQNYLNYTRRIDRITEKGYFNYGLDTLSQIIKFHGPLNALINYDYVHTMQQAIDKRISNPYLRQMLGYFIKYVGSSSYDAPAVLSMLFHMQQEQGLWYVEGGIHHLANALEKLAREEGVTIHTGARVDNIKTYQRRVTGVRLDTGEFVKADYIISNMEVIPTYKYLLHLDTQRLNKLEREFEPASSGYVMHLGVACQYPQLAHHNFFFTENAYLNYQQVFHEKVLPDDPTIYLVNTNKTDHTQAPVGYENIKVLPHIPYIQDQPFTTEDYAKFRDKILDKLEKMGLTDLRKHIIYEDVWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVTLSGQQVADKINAREAKNRK
>CP029629.1|AWQ32692.1|2650583_2650961_-|glyoxalase
MIQSMWFNLHVQDLEKSAQFYKALGFKINRNPQMLDKMVGIQIGQTTVILIENKHFQNVSQQSLNTEPNEVMISLGVNTNEEVDQLVNKVKEAGGAVVQEPTVSQGFYGAMFKDLDGHHFNFLVC
>CP029629.1|AWQ32693.1|2650977_2651799_-|NmrA/HSCARG-family-protein
MKDILVIGATGKQGNAVVKQLLEDGWYVSALTRNKNNRKLSDIGHPHLSIVEGDLSDNVSLQSAMKGKYGLYSIQPIVKDDVSEELRQGMKIIEIAEQENIQHIVYSTAGGVNRNRTGPHFEVLAKIENRLMESNINATVIKPSFFMDNFLRIAKVEDERITLPEFINPNIKFTMISSIDIAKIASYIFAHPQSFTHQSIEIGSDEVTLSEAATIFSEVTGKSTVIEGEFVSGVAEKQWLEEKGYEVDFELMAEINPTRLSLSDWLKVQNYNK
>CP029629.1|AWQ32694.1|2651818_2652118_-|DUF2316-domain-containing-protein
MSLNKEQRRITCEELQAHFEASTLSVQMIAEKLNVTTEDVEKVLAMTAPLGIFSHQLQRFIHLVWDVRDVINDNIKGNGQTPEPYTYLKGEKEDYWFLR
>CP029629.1|AWQ32695.1|2652249_2652807_+|TetR/AcrR-family-transcriptional-regulator
MRKDAIENRQRIEEIAHKLFDEEGVENISMNRIAKELGIGMGTLYRHFKDKSDLCYYVIQRDLDIFITHFKQIKDDYHSNYEVMQVSLDYLLQFKIDNKALLQCIEAGNNKLRFYQSAFYQELFDFYYDLFKSDDDTYTKFKTDMLLQSLSTSVFAFQIEHRHISIEAYRNYLLNIYLDEVERND
>CP029629.1|AWQ32696.1|2652799_2653504_+|KR-domain-containing-protein
MTKIVLITGGNKGLGYASAEALKALGYKVYIGSRNDVRGQQASQKLGVHYVQLDVTSDYSVKNAYNMIAEKEGRLDILINNAGISGQFSAPSKLTPRDVEEVYQTNVFGIVRMMNTFVPLLEKSEQPVVVNVSSGLGSFGMVTNPETAESKVNSLAYCSSKSAVTMLTLQYAKGLPNMQINAADPGATNTDLVGDFSNNSKHVSEGIKPIIQLATIGADGPTGTFINGDGEMPW
>CP029629.1|AWQ32697.1|2653590_2654601_+|amidohydrolase
MKSITFEEHYVIEDIQKETMNAISADPKGVPMKVMLEGLEKKTGFTNADELSHHDERIQFMNNQDVQIQVLSYGNGSPSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPINEPEAAAREFERCINDLGFKGALIMGRAQDGFLDQDKYDIIFKTAENLGVPIYLHPAPVNSDIYQSYYKGNYPEVTAATFACFGYGWHIDVGIHAIHLVLSGIFDRYPKLNMIIGHWGEFIPFFLERMDEALFAEHLNHPVSYYFKNNFYITPSGMLTKPQFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDELGLTDEEKEKISYTNGAKLLGLSSNN
>CP029629.1|AWQ32698.1|2654620_2655451_+|alpha/beta-hydrolase
METLELQGAKLRYHQVGQGPVLIFIPGANGTGDIFLPLAEQLKDHFTVVAVDRRDYGESELTEPIPDSASNPDSDYRVKRDAQDIAELAKSLSDEPVYILGSSSGSIVAMHVLKDYPEVVKKIAFHEPPINTFLPDSTYWKDKNDDIVHQILTEGLEKGMKTFGETLNIAPIDAKMMSQPADTEEGRIEQYKRTMFWSKFEIRQYTHSDITLDDFTKYSDKITLLNGTDSRGSFPQDVNFYINKETGIPIVDIPGGHLGYIQKPEGFADVLLNLWG
>CP029629.1|AWQ32699.1|2655597_2656488_-|GTP-binding-protein
MKIVIIGGFLGGGKTTVLNHLLAESLKESLKPAVIMNEFGKMSVDGALVSEDIPLSELTEGCICCAMKADVSEQLHQLYLKEQPDIVFIECSGIAEPVSVLDACLTPILAPFTTITHMIGVIDASMYKHIKSFPKDIQGLFYEQLAYCSVLFVNKIDSADVETTSKLLKDLEVINPEADIQVGMHGSVTLPISVRQMTATSDNKHKSLHQMINHQFVQSPVKCTKAEFIKRLACLPSHIYRLKGFMTFEDTAHTYLIQFTQGQYELTPVAFSKKVPEYLVLIGKGISKEDYQCLEQ
>CP029629.1|AWQ32700.1|2656584_2657925_-|ferrous-iron-transporter-B
MLEVKYDMRTGHYTPIPNEPHYLVISHADKLTATEKAKLRLLIIKQKLDISLAESVVSSPIASEHVIEQLTLFQHERRHLRPKISATFLAWLLIFLMFALPIGIAYQFSDWFQNQYVSAWIEYLTQTTLLNHDILQHILFGDYGVLSLGTYSLVWALPVVILISLSTAIIDQTGLKSWMIWAIEPSMLRIGLQGNDIVPLLEGFGCNAAAISQAAHQCHTCTKTQCMSLISFGSSCSYQIGATLSIFSVAGKSWLFMPYLILVLLGGILHNRIWLKKNDQQLSVPLPYDRQLHMPNIRQMLLQMWQNIQMFIVQALPIFITICLIVSILSLTPILNVLSQIFTPILSLLGISSELSPGILFSMIRKDGMLLFNLHQGALLQGMTATQLLLLVFFSSTFTACSVTMTMLLKHLGGQSALKLIGKQMVTSLSLVIGVGIIVKIVMLII
>CP029629.1|AWQ32701.1|2657918_2659025_-|pyridine-nucleotide-disulfide-oxidoreductase
MQHHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTLTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISVDDAFYTIATTTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKNQMYLDDYSCCEVSCTC

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029629_5	5.3\|1967192\|33\|CP029629\|CRISPRCasFinder	1967192-1967224	33	CP029629.1	809364-809396	0	1.0
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	142650-142678	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	265894-265922	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	390294-390322	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	390349-390377	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	809371-809399	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1275771-1275799	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1320620-1320648	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1408346-1408374	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1563551-1563579	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1563609-1563637	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1647445-1647473	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1651414-1651442	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1874887-1874915	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1923999-1924027	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	1972633-1972661	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	2327626-2327654	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	2361848-2361876	1	0.966
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	2650369-2650397	1	0.966
CP029629_4	4.1\|1924052\|34\|CP029629\|CRISPRCasFinder	1924052-1924085	34	CP029629.1	1320732-1320765	1	0.971
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	809328-809352	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	1136340-1136364	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	1275645-1275669	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	1275701-1275725	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	1320752-1320776	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	1408218-1408242	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	2013751-2013775	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	2361978-2362002	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	2598361-2598385	1	0.96
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	CP029629.1	2766778-2766802	1	0.96
CP029629_8	8.1\|2650422\|34\|CP029629\|CRISPRCasFinder	2650422-2650455	34	CP029629.1	1320732-1320765	1	0.971
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	265839-265867	2	0.931
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	2517651-2517679	2	0.931
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	CP029629.1	2598487-2598515	2	0.931
CP029629_4	4.1\|1924052\|34\|CP029629\|CRISPRCasFinder	1924052-1924085	34	CP029629.1	1563493-1563526	2	0.941
CP029629_8	8.1\|2650422\|34\|CP029629\|CRISPRCasFinder	2650422-2650455	34	CP029629.1	1563493-1563526	2	0.941

1. spacer 5.3|1967192|33|CP029629|CRISPRCasFinder matches to position: 809364-809396, mismatch: 0, identity: 1.0

ggtgtgggccccaacacagagaatttcgaaaag	CRISPR spacer
ggtgtgggccccaacacagagaatttcgaaaag	Protospacer
*********************************

2. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 142650-142678, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

3. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 265894-265922, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

4. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 390294-390322, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctttgttggggc	Protospacer
******************* *********

5. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 390349-390377, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctttgttggggc	Protospacer
******************* *********

6. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 809371-809399, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

7. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1275771-1275799, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

8. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1320620-1320648, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

9. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1408346-1408374, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

10. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1563551-1563579, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcatttcgaaattctctatgttggggc	Protospacer
**** ************************

11. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1563609-1563637, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

12. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1647445-1647473, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttctttttgaaattctctatgttggggc	Protospacer
********.********************

13. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1651414-1651442, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

14. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1874887-1874915, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

15. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1923999-1924027, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

16. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 1972633-1972661, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

17. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 2327626-2327654, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttctttttgaaattctctatgttggggc	Protospacer
********.********************

18. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 2361848-2361876, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

19. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 2650369-2650397, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctctgtgttggggc	Protospacer
*******************.*********

20. spacer 4.1|1924052|34|CP029629|CRISPRCasFinder matches to position: 1320732-1320765, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

21. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 809328-809352, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

22. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 1136340-1136364, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattgccaatttctacagaca	Protospacer
******** ****************

23. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 1275645-1275669, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

24. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 1275701-1275725, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

25. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 1320752-1320776, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

26. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 1408218-1408242, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

27. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 2013751-2013775, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

28. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 2361978-2362002, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

29. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 2598361-2598385, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

30. spacer 5.1|1967189|25|CP029629|PILER-CR matches to position: 2766778-2766802, mismatch: 1, identity: 0.96

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

31. spacer 8.1|2650422|34|CP029629|CRISPRCasFinder matches to position: 1320732-1320765, mismatch: 1, identity: 0.971

atgggccccaacacagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
************* ********************

32. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 265839-265867, mismatch: 2, identity: 0.931

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcttttcgaaattctttgtgttggggc	Protospacer
*****************.*.*********

33. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 2517651-2517679, mismatch: 2, identity: 0.931

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttctttttgaaattctctgtgttggggc	Protospacer
********.**********.*********

34. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to position: 2598487-2598515, mismatch: 2, identity: 0.931

tttcttttcgaaattctctatgttggggc	CRISPR spacer
tttcatttcgaaattctctgtgttggggc	Protospacer
**** **************.*********

35. spacer 4.1|1924052|34|CP029629|CRISPRCasFinder matches to position: 1563493-1563526, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
********************.********.****

36. spacer 8.1|2650422|34|CP029629|CRISPRCasFinder matches to position: 1563493-1563526, mismatch: 2, identity: 0.941

atgggccccaacacagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaagttggattcccaat	Protospacer
************* ******.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	MN693923	Marine virus AFVG_250M958, complete genome	22918-22942	4	0.84
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	MN694427	Marine virus AFVG_250M959, complete genome	30328-30352	4	0.84
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	AP014226	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, * SEQUENCING IN PROGRESS *	28488-28512	5	0.8
CP029629_5	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	AP014225	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, * SEQUENCING IN PROGRESS *	24653-24677	5	0.8
CP029629_2	2.1\|1016025\|29\|CP029629\|CRISPRCasFinder	1016025-1016053	29	NZ_CP018781	Ochrobactrum pituitosum strain AA2 plasmid pOAAA2, complete sequence	148987-149015	7	0.759

1. spacer 5.1|1967189|25|CP029629|PILER-CR matches to MN693923 (Marine virus AFVG_250M958, complete genome) position: , mismatch: 4, identity: 0.84

attggatttccaatttctacagaca	CRISPR spacer
ctttgatttccaatttctacatacc	Protospacer
 ** ***************** **

2. spacer 5.1|1967189|25|CP029629|PILER-CR matches to MN694427 (Marine virus AFVG_250M959, complete genome) position: , mismatch: 4, identity: 0.84

attggatttccaatttctacagaca	CRISPR spacer
ctttgatttccaatttctacatacc	Protospacer
 ** ***************** **

3. spacer 5.1|1967189|25|CP029629|PILER-CR matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.8

attggatttccaatttctacagaca	CRISPR spacer
gttggatttccattttctacagttc	Protospacer
.*********** ********* .

4. spacer 5.1|1967189|25|CP029629|PILER-CR matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.8

attggatttccaatttctacagaca	CRISPR spacer
gttggatttccattttctacagttc	Protospacer
.*********** ********* .

5. spacer 2.1|1016025|29|CP029629|CRISPRCasFinder matches to NZ_CP018781 (Ochrobactrum pituitosum strain AA2 plasmid pOAAA2, complete sequence) position: , mismatch: 7, identity: 0.759

tttcttttcgaaattctctatgttggggc	CRISPR spacer
accatcttcgtaatgctctatgttggggc	Protospacer
 .. *.**** *** **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

325275 : 368878

Staphylococcus_phage(70.49%)

tail,capsid,head,portal,holin,protease,terminase,integrase

attL 325165:325182|attR 369612:369629

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
325165:325182	attL	NA	NA	NA	NA
AWQ30489.1\|325275_326481_-\|integrase	site-specific integrase	Q4ZBP1	Staphylococcus_phage	1.9e-221	99.8
AWQ30490.1\|326606_327221_+	ATPase	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
AWQ30491.1\|327217_327364_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.7e-15	93.8
AWQ30492.1\|327453_327849_-	hypothetical protein	A0A2I6PEJ7	Staphylococcus_phage	3.8e-70	100.0
AWQ30493.1\|327877_328312_-	hypothetical protein	A0A2I6PEM0	Staphylococcus_phage	1.2e-24	100.0
AWQ30494.1\|328329_328791_-	toxin	A0A2I6PEK4	Staphylococcus_phage	1.3e-85	99.3
AWQ30495.1\|328803_329133_-	XRE family transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
AWQ30496.1\|329293_329485_+	XRE family transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	2.3e-28	100.0
AWQ30497.1\|329741_329981_-	hypothetical protein	A0A2I6PE22	Staphylococcus_phage	6.7e-38	100.0
AWQ30498.1\|330027_330243_+	hypothetical protein	A0A2I6PEK7	Staphylococcus_phage	1.0e-32	100.0
AWQ30499.1\|330267_330531_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
AWQ30500.1\|330543_330705_+	DUF1270 domain-containing protein	A9CR58	Staphylococcus_phage	1.1e-20	98.1
AWQ30501.1\|330783_331107_+	TrmB family transcriptional regulator	A0A2I6PF12	Staphylococcus_phage	5.9e-53	100.0
AWQ30502.1\|331121_331484_+	hypothetical protein	A0A2I6PF03	Staphylococcus_phage	4.9e-56	100.0
AWQ30503.1\|331480_332647_+	DUF2800 domain-containing protein	A7TWG4	Staphylococcus_phage	2.7e-220	99.5
AWQ30504.1\|332673_333228_+	DUF2815 domain-containing protein	M9QRS1	Staphylococcus_phage	1.4e-99	100.0
AWQ32849.1\|333296_335249_+	DNA polymerase	B7T0G8	Staphylococcus_virus	0.0e+00	98.2
AWQ30505.1\|335261_335447_+	DUF3113 domain-containing protein	A0A2I6PEM8	Staphylococcus_phage	2.1e-26	98.4
AWQ30506.1\|335446_335848_+	PVL family protein	B7T0H0	Staphylococcus_virus	1.2e-68	100.0
AWQ30507.1\|335847_336105_+	DUF3310 domain-containing protein	B7T0H1	Staphylococcus_virus	7.5e-43	100.0
AWQ30508.1\|336107_336308_+	hypothetical protein	B7T0H2	Staphylococcus_virus	3.7e-29	100.0
AWQ30509.1\|336304_336994_+	methylase	B7T0H3	Staphylococcus_virus	6.1e-132	100.0
AWQ30510.1\|337007_337214_+	hypothetical protein	B7T0H4	Staphylococcus_virus	7.8e-35	100.0
AWQ30511.1\|337216_337645_+	hypothetical protein	B7T0H5	Staphylococcus_virus	1.0e-73	100.0
AWQ30512.1\|337641_337836_+	hypothetical protein	B7T0H6	Staphylococcus_virus	1.1e-27	100.0
AWQ30513.1\|337832_338117_+	hypothetical protein	Q9G014	Staphylococcus_virus	2.2e-43	94.7
AWQ30514.1\|338109_338358_+	DUF1024 domain-containing protein	B7T0H8	Staphylococcus_virus	4.1e-38	100.0
AWQ30515.1\|338350_338911_+	dUTPase	B7T0H9	Staphylococcus_virus	1.8e-102	100.0
AWQ30516.1\|338947_339148_+	hypothetical protein	NA	NA	NA	NA
AWQ30517.1\|339147_339351_+	DUF1381 domain-containing protein	B7T0I0	Staphylococcus_virus	3.5e-19	100.0
AWQ30518.1\|339347_339500_+	transcriptional regulator	B7T0I1	Staphylococcus_virus	8.9e-20	100.0
AWQ30519.1\|339567_339768_+	DUF1514 domain-containing protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
AWQ32850.1\|341211_342267_+	hypothetical protein	B7T0I3	Staphylococcus_virus	4.7e-208	100.0
AWQ30520.1\|342369_342474_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	2.7e-12	100.0
AWQ30521.1\|342607_342898_+	VRR-NUC domain-containing protein	B7T0I4	Staphylococcus_virus	4.9e-51	100.0
AWQ30522.1\|342878_344246_+	DEAD/DEAH box helicase	B7T0I5	Staphylococcus_virus	3.5e-264	99.6
AWQ30523.1\|344258_344696_+	transcriptional regulator	B7T0I6	Staphylococcus_virus	6.1e-77	100.0
AWQ30524.1\|344852_345167_+	HNH endonuclease	A0A0K1LL59	Staphylococcus_phage	4.2e-56	100.0
AWQ30525.1\|345293_345599_+\|terminase	phage terminase small subunit P27 family	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
AWQ30526.1\|345588_347280_+\|terminase	terminase large subunit	A0A2I6PE99	Staphylococcus_phage	0.0e+00	99.8
AWQ30527.1\|347284_348523_+\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	6.9e-235	100.0
AWQ30528.1\|348506_349280_+\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
AWQ32851.1\|349291_350455_+\|capsid	phage major capsid protein	A0A0K1LKB5	Staphylococcus_phage	2.7e-217	100.0
AWQ30529.1\|350523_350802_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AWQ30530.1\|350813_351146_+	hypothetical protein	M9QX19	Staphylococcus_phage	1.1e-57	100.0
AWQ30531.1\|351142_351544_+	hypothetical protein	A0A0K1LL98	Staphylococcus_phage	6.8e-67	99.2
AWQ30532.1\|351544_351940_+	DUF3168 domain-containing protein	A0A0K1LKC0	Staphylococcus_phage	5.1e-67	100.0
AWQ30533.1\|351974_352616_+\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AWQ30534.1\|352707_353163_+\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	1.7e-77	99.3
AWQ30535.1\|353220_353571_+	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AWQ30536.1\|353612_353771_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AWQ30537.1\|353784_359985_+\|tail	phage tail tape measure protein	M9QQM6	Staphylococcus_phage	0.0e+00	99.2
AWQ30538.1\|359984_360809_+\|tail	phage tail family protein	A0A2I6PEE1	Staphylococcus_phage	5.4e-159	100.0
AWQ30539.1\|360817_362401_+	peptidase	Q8SDP1	Staphylococcus_virus	7.1e-309	100.0
AWQ30540.1\|362400_362691_+	hypothetical protein	A0A2I6PF46	Staphylococcus_phage	2.1e-49	100.0
AWQ30541.1\|362706_364617_+	hypothetical protein	A0A2I6PF35	Staphylococcus_phage	0.0e+00	99.7
AWQ30542.1\|364616_366083_+	DUF2479 domain-containing protein	A0A2I6PES7	Staphylococcus_phage	6.4e-272	99.6
AWQ30543.1\|366082_366472_+	DUF2977 domain-containing protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AWQ30544.1\|366464_366629_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AWQ30545.1\|366674_366974_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWQ30546.1\|367109_367412_+\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AWQ30547.1\|367423_368878_+	CHAP domain-containing protein	A0A0N6WMR3	Staphylococcus_phage	3.0e-290	100.0
369612:369629	attR	NA	NA	NA	NA

DBSCAN-SWA_2

681224 : 733126

Staphylococcus_phage(50.0%)

tRNA,coat,protease,transposase,terminase,integrase

attL 719787:719806|attR 736156:736175

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ30828.1\|681224_682544_-\|transposase	ISL3 family transposase IS1181	NA	NA	NA	NA
AWQ30829.1\|682945_683362_+	hypothetical protein	NA	NA	NA	NA
AWQ30830.1\|683438_684707_-	L-threonine dehydratase biosynthetic IlvA	NA	NA	NA	NA
AWQ30831.1\|684721_685294_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
AWQ30832.1\|685294_686665_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
AWQ30833.1\|686678_687725_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
AWQ30834.1\|687727_689257_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	5.5e-08	27.8
AWQ30835.1\|689286_690291_-	ketol-acid reductoisomerase	NA	NA	NA	NA
AWQ30836.1\|690427_690682_-	ACT domain-containing protein	NA	NA	NA	NA
AWQ30837.1\|690681_692451_-	biosynthetic-type acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.3e-63	30.1
AWQ30838.1\|692478_694167_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
AWQ30839.1\|694484_694640_-	hypothetical protein	NA	NA	NA	NA
AWQ32865.1\|694704_695139_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
AWQ30840.1\|695119_695782_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AWQ30841.1\|695754_696219_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA
AWQ30842.1\|696211_697237_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.8e-62	40.6
AWQ30843.1\|697338_698949_-	MutS family DNA mismatch repair protein	A0A0N9R0S5	Chrysochromulina_ericina_virus	3.3e-19	26.9
AWQ30844.1\|699629_699758_+	hypothetical protein	NA	NA	NA	NA
AWQ30845.1\|699902_701831_-	ABC transporter ATP-binding protein	A0A2K9L0W2	Tupanvirus	2.4e-53	30.4
AWQ30846.1\|702083_702719_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
AWQ32866.1\|703073_704102_+	YeeE/YedE family protein	NA	NA	NA	NA
AWQ30847.1\|704161_704386_+	oxidoreductase	NA	NA	NA	NA
AWQ30848.1\|704592_705843_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	7.6e-40	31.2
AWQ30849.1\|706025_706976_+	LacI family transcriptional regulator	NA	NA	NA	NA
AWQ30850.1\|707124_708609_+	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	4.0e-19	25.6
AWQ30851.1\|708605_709565_+	carbohydrate kinase	NA	NA	NA	NA
AWQ30852.1\|709933_710650_-	DNA-binding response regulator	A0A2H4J4Z6	uncultured_Caudovirales_phage	3.0e-25	32.6
AWQ32867.1\|710668_711913_-	GHKL domain-containing protein	NA	NA	NA	NA
AWQ30853.1\|711985_712126_-	cyclic lactone autoinducer peptide	NA	NA	NA	NA
AWQ30854.1\|712122_712692_-	accessory gene regulator AgrB	NA	NA	NA	NA
AWQ30855.1\|712927_713062_+	delta-lysin family phenol-soluble modulin	NA	NA	NA	NA
AWQ30856.1\|713657_714443_-	carbon-nitrogen family hydrolase	NA	NA	NA	NA
AWQ30857.1\|714803_715430_-	nitroreductase family protein	NA	NA	NA	NA
AWQ30858.1\|715625_716885_+	hypothetical protein	NA	NA	NA	NA
AWQ30859.1\|716909_717653_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AWQ30860.1\|717827_718112_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AWQ30861.1\|718187_719804_+	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
719787:719806	attL	NA	NA	NA	NA
AWQ30862.1\|719872_721045_-\|integrase	site-specific integrase	A0A1W6JQD3	Staphylococcus_phage	5.9e-220	98.5
AWQ30863.1\|721058_721733_-	XRE family transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	4.5e-39	45.3
AWQ30864.1\|721905_722124_+	XRE family transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
AWQ30865.1\|722128_722446_+	helix-turn-helix domain-containing protein	A0A1W6JQE0	Staphylococcus_phage	9.2e-51	98.1
AWQ30866.1\|722442_722598_+	pathogenicity island protein	NA	NA	NA	NA
AWQ30867.1\|722582_722786_+	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	7.5e-30	97.0
AWQ30868.1\|722787_723171_+	pathogenicity island protein	A0A1W6JQI7	Staphylococcus_phage	2.2e-62	96.9
AWQ30869.1\|723171_723498_+	DUF1474 domain-containing protein	Q4ZE75	Staphylococcus_phage	1.8e-54	98.1
AWQ30870.1\|723562_724432_+	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	5.0e-163	95.5
AWQ30871.1\|724445_726155_+	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	0.0e+00	98.8
AWQ30872.1\|726466_726847_+	hypothetical protein	Q4ZE71	Staphylococcus_phage	2.6e-68	97.6
AWQ30873.1\|726843_727485_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	3.8e-104	88.7
AWQ30874.1\|727933_728275_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	2.9e-58	100.0
AWQ30875.1\|728286_728865_+	pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	3.7e-29	38.9
AWQ32868.1\|728882_729101_+	hypothetical protein	NA	NA	NA	NA
AWQ30876.1\|729151_729679_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	3.2e-88	96.6
AWQ32869.1\|729810_730023_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.1e-28	88.6
AWQ30877.1\|730019_730589_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	5.1e-100	96.8
AWQ30878.1\|730772_732242_+	MFS transporter	NA	NA	NA	NA
AWQ30879.1\|732442_733126_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
736156:736175	attR	NA	NA	NA	NA

DBSCAN-SWA_3

850401 : 899662

Staphylococcus_phage(86.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ30979.1\|850401_850872_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
AWQ30980.1\|851030_851630_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
AWQ30981.1\|851654_851807_+	hypothetical protein	NA	NA	NA	NA
AWQ30982.1\|851938_852232_-	hypothetical protein	NA	NA	NA	NA
AWQ30983.1\|852350_852746_+	hypothetical protein	NA	NA	NA	NA
AWQ30984.1\|852941_854327_+	class II fumarate hydratase	NA	NA	NA	NA
AWQ30985.1\|854778_855600_-	RluA family pseudouridine synthase	NA	NA	NA	NA
AWQ30986.1\|855762_856875_+	histidine kinase	NA	NA	NA	NA
AWQ30987.1\|856896_857520_+	DNA-binding response regulator	NA	NA	NA	NA
AWQ30988.1\|857875_858340_+	transcriptional regulator	NA	NA	NA	NA
AWQ30989.1\|858518_859643_+	DUF445 domain-containing protein	NA	NA	NA	NA
AWQ30990.1\|859711_860056_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AWQ30991.1\|860704_860803_+	hypothetical protein	NA	NA	NA	NA
AWQ30992.1\|861093_862290_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
AWQ30993.1\|862279_865216_+	DNA repair protein Rad50	NA	NA	NA	NA
AWQ30994.1\|865212_866154_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AWQ30995.1\|866274_867237_-	foldase	NA	NA	NA	NA
AWQ30996.1\|867441_867999_-	DUF3267 domain-containing protein	NA	NA	NA	NA
AWQ30997.1\|868731_869097_-	YtxH domain-containing protein	NA	NA	NA	NA
AWQ30998.1\|869238_869661_-	HIT family protein	NA	NA	NA	NA
AWQ30999.1\|869794_870535_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AWQ31000.1\|870527_871751_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA
AWQ31001.1\|871874_872378_-	signal transduction protein TRAP	NA	NA	NA	NA
AWQ31002.1\|872540_872651_+	hypothetical protein	NA	NA	NA	NA
AWQ31003.1\|872640_873678_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AWQ31004.1\|873735_874659_+	ferrochelatase	NA	NA	NA	NA
AWQ31005.1\|874682_876083_+	protoporphyrinogen oxidase	NA	NA	NA	NA
AWQ31006.1\|876084_876312_-	hypothetical protein	NA	NA	NA	NA
AWQ31007.1\|876405_876960_+	serine hydrolase family protein	NA	NA	NA	NA
AWQ31008.1\|879358_879853_-	hypothetical protein	NA	NA	NA	NA
AWQ31009.1\|880250_881027_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AWQ31010.1\|881047_881284_-	hypothetical protein	NA	NA	NA	NA
AWQ31011.1\|881870_883217_-	DUF4041 domain-containing protein	M1NRY5	Streptococcus_phage	5.7e-65	50.8
AWQ31012.1\|883383_883980_-	hypothetical protein	NA	NA	NA	NA
AWQ31013.1\|884448_884694_-	hypothetical protein	NA	NA	NA	NA
AWQ32875.1\|885616_886522_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	3.6e-172	99.7
AWQ31014.1\|886523_887507_+	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
AWQ31015.1\|887876_888668_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AWQ31016.1\|888672_889146_-	hypothetical protein	NA	NA	NA	NA
AWQ32876.1\|889401_889620_+	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	7.5e-20	70.8
AWQ31017.1\|890093_890663_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	2.6e-51	62.6
AWQ31018.1\|891626_892334_+\|protease	serine protease	A0A2H4PQN3	Staphylococcus_phage	7.7e-130	99.6
AWQ31019.1\|892458_893181_+\|protease	serine protease	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
AWQ31020.1\|893238_893958_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AWQ31021.1\|894078_894798_+\|protease	serine protease	A0A2H4PQP9	Staphylococcus_phage	5.1e-129	99.2
AWQ31022.1\|894746_894854_-	hypothetical protein	NA	NA	NA	NA
AWQ31023.1\|894955_895672_+\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	7.0e-131	98.7
AWQ31024.1\|895822_896542_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AWQ31025.1\|896606_896741_+	hypothetical protein	NA	NA	NA	NA
AWQ31026.1\|896721_898461_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.2e-286	98.8
AWQ31027.1\|898453_899662_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	9.3e-35	31.5

DBSCAN-SWA_4

908856 : 954217

Staphylococcus_phage(94.29%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ31036.1\|908856_909414_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.7e-77	96.2
AWQ31037.1\|909610_910183_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.1e-25	96.6
AWQ31038.1\|910283_910625_-	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	95.6
AWQ31039.1\|910665_911292_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	5.3e-90	93.8
AWQ31040.1\|911367_912363_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	6.2e-77	98.8
AWQ31041.1\|912443_913094_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.7e-44	88.4
AWQ31042.1\|914011_915490_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-282	97.2
AWQ31043.1\|915494_916496_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.2e-186	97.9
AWQ31044.1\|916492_916750_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AWQ31045.1\|916815_917289_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
AWQ32878.1\|917293_918040_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.4e-142	98.8
AWQ31046.1\|918417_920010_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AWQ31047.1\|920381_921575_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AWQ31048.1\|921699_922608_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-137	99.7
AWQ31049.1\|922819_923653_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.4e-159	100.0
AWQ31050.1\|923664_923844_-	hypothetical protein	NA	NA	NA	NA
AWQ31051.1\|924035_924389_-	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
AWQ31052.1\|924385_924751_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AWQ31053.1\|925006_925309_-	hypothetical protein	NA	NA	NA	NA
AWQ31054.1\|925568_926282_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AWQ31055.1\|926721_927357_-\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
AWQ31056.1\|927652_928096_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AWQ31057.1\|928082_928526_-	competence protein ComK	NA	NA	NA	NA
AWQ31058.1\|928638_929109_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AWQ31059.1\|929307_929532_+	hypothetical protein	NA	NA	NA	NA
AWQ31060.1\|929807_930662_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWQ31061.1\|930748_932041_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	9.4e-227	99.3
AWQ31062.1\|932040_932355_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AWQ31063.1\|932877_934380_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AWQ32879.1\|934872_935904_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AWQ31064.1\|935910_936543_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AWQ31065.1\|936553_937735_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
AWQ31066.1\|937747_938212_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AWQ31067.1\|938333_939335_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AWQ32880.1\|939243_939435_+	hypothetical protein	NA	NA	NA	NA
AWQ31068.1\|939446_939566_+	hypothetical protein	NA	NA	NA	NA
AWQ31069.1\|939568_940396_+	alpha/beta hydrolase	NA	NA	NA	NA
AWQ31070.1\|940967_941369_+	MarR family transcriptional regulator	NA	NA	NA	NA
AWQ31071.1\|941488_942052_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AWQ31072.1\|942048_943002_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWQ31073.1\|943111_944293_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
AWQ31074.1\|944580_946998_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
AWQ31075.1\|947019_947331_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
AWQ31076.1\|947656_954217_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.6e-309	99.0

DBSCAN-SWA_5

1079555 : 1088598

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ31189.1\|1079555_1080560_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AWQ31190.1\|1080561_1081587_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AWQ31191.1\|1081609_1082749_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWQ31192.1\|1082767_1083028_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWQ31193.1\|1083302_1085582_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AWQ31194.1\|1085784_1088058_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.2e-63	28.8
AWQ31195.1\|1088079_1088598_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_6

1156433 : 1164763

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ31266.1\|1156433_1158251_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3
AWQ31267.1\|1158474_1159581_+	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AWQ31268.1\|1159711_1160389_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AWQ31269.1\|1160391_1161492_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AWQ31270.1\|1161605_1162952_+	ATP-dependent helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AWQ31271.1\|1162961_1163852_+	endonuclease	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
AWQ31272.1\|1163977_1164763_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_7

1443367 : 1503984

Staphylococcus_phage(57.69%)

tRNA,plate,capsid,head,portal,holin,tail,terminase,integrase

attL 1450472:1450531|attR 1483705:1483828

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ31519.1\|1443367_1443829_-\|capsid	phage capsid protein	A0A1J0MF61	Staphylococcus_phage	3.8e-29	46.0
AWQ31520.1\|1444220_1444490_-	hypothetical protein	NA	NA	NA	NA
AWQ31521.1\|1444609_1444822_-	hypothetical protein	NA	NA	NA	NA
AWQ31522.1\|1444788_1444917_-	hypothetical protein	NA	NA	NA	NA
AWQ31523.1\|1445109_1445544_-	hypothetical protein	NA	NA	NA	NA
AWQ31524.1\|1446018_1446270_-	hypothetical protein	NA	NA	NA	NA
AWQ31525.1\|1446270_1446444_-	hypothetical protein	NA	NA	NA	NA
AWQ31526.1\|1446398_1446503_-	hypothetical protein	NA	NA	NA	NA
AWQ31527.1\|1447626_1447737_-	hypothetical protein	NA	NA	NA	NA
AWQ31528.1\|1448437_1448644_-	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
AWQ31529.1\|1448940_1449159_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	6.4e-19	73.1
AWQ31530.1\|1449846_1450044_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	50.0
1450472:1450531	attL	NA	NA	NA	NA
AWQ31531.1\|1450879_1451068_-	hypothetical protein	NA	NA	NA	NA
AWQ31532.1\|1451048_1451252_-	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	4.4e-14	61.8
AWQ31533.1\|1451899_1452085_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	1.9e-16	70.5
AWQ31534.1\|1452086_1452197_-	hypothetical protein	W5R8J7	Staphylococcus_phage	3.3e-08	83.3
AWQ31535.1\|1452266_1452395_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	7.5e-12	85.7
AWQ31536.1\|1452594_1453515_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	7.0e-67	51.5
AWQ31537.1\|1453579_1453969_-\|holin	holin	A0A1S6L1J2	Staphylococcus_phage	5.3e-16	38.2
AWQ31538.1\|1453981_1455379_-\|plate	phage baseplate upper protein	A0A1J0MFK8	Staphylococcus_phage	5.8e-105	44.7
AWQ31539.1\|1455397_1456411_-	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	1.1e-97	52.6
AWQ31540.1\|1456428_1458114_-	hypothetical protein	Q4ZE19	Staphylococcus_virus	8.8e-108	46.3
AWQ31541.1\|1458122_1459058_-\|tail	phage tail protein	A0A1J0MF79	Staphylococcus_phage	7.8e-98	55.9
AWQ31542.1\|1459072_1462243_-	hypothetical protein	Q4ZE24	Staphylococcus_virus	5.5e-95	54.7
AWQ32893.1\|1462254_1462608_-	hypothetical protein	Q4ZE25	Staphylococcus_virus	1.7e-37	72.3
AWQ31543.1\|1462658_1463003_-\|tail	phage tail protein	A0A1J0MFH0	Staphylococcus_phage	2.9e-34	58.0
AWQ31544.1\|1463064_1463664_-\|tail	phage major tail protein, TP901-1 family	H9A0N8	Staphylococcus_phage	7.4e-17	47.5
AWQ31545.1\|1463675_1464071_-	hypothetical protein	H9A0N7	Staphylococcus_phage	1.9e-21	42.3
AWQ31546.1\|1464080_1464431_-	hypothetical protein	H9A0N6	Staphylococcus_phage	9.3e-36	60.0
AWQ31547.1\|1464431_1464737_-	hypothetical protein	Q4ZE30	Staphylococcus_virus	6.4e-17	40.6
AWQ31548.1\|1464736_1465063_-\|head,tail	phage head-tail adapter protein	Q4ZE31	Staphylococcus_virus	2.1e-26	56.4
AWQ31549.1\|1465078_1465552_-	hypothetical protein	A0A2H4J9T3	uncultured_Caudovirales_phage	9.7e-12	31.6
AWQ31550.1\|1465629_1466541_-\|capsid	capsid protein	Q4ZE33	Staphylococcus_virus	6.5e-97	59.7
AWQ31551.1\|1466559_1467138_-	DUF4355 domain-containing protein	Q4ZE34	Staphylococcus_virus	1.9e-09	50.8
AWQ31552.1\|1467104_1467233_-	hypothetical protein	NA	NA	NA	NA
AWQ32894.1\|1467432_1468422_-\|head	head morphogenesis protein	Q4ZE35	Staphylococcus_virus	2.6e-51	69.6
AWQ31553.1\|1468951_1470400_-\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	7.4e-196	69.4
AWQ31554.1\|1470412_1471687_-\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	1.9e-195	76.4
AWQ31555.1\|1471673_1472102_-	helix-turn-helix domain-containing protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AWQ31556.1\|1472254_1472743_-	RNA polymerase subunit sigma-70	R9TMH4	Paenibacillus_phage	4.3e-07	27.7
AWQ31557.1\|1472785_1473019_-	hypothetical protein	NA	NA	NA	NA
AWQ31558.1\|1473019_1473484_-	hypothetical protein	C9E2P0	Enterococcus_phage	3.2e-20	43.0
AWQ31559.1\|1473480_1473588_-	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	3.2e-08	87.5
AWQ31560.1\|1473729_1474260_-	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	5.2e-22	38.2
AWQ31561.1\|1474252_1474564_-	hypothetical protein	NA	NA	NA	NA
AWQ31562.1\|1474563_1474728_-	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	1.1e-18	88.9
AWQ31563.1\|1474742_1475033_-	hypothetical protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
AWQ31564.1\|1475033_1475936_-	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	2.9e-49	52.0
AWQ32895.1\|1475948_1476443_-	single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	6.4e-83	94.0
AWQ31565.1\|1476523_1477303_-	chromosomal replication initiator DnaA	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
AWQ31566.1\|1477303_1477840_-	hypothetical protein	A0A0H3U480	Staphylococcus_phage	6.3e-76	81.9
AWQ31567.1\|1477844_1478111_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
AWQ31568.1\|1478100_1478418_-	DUF2482 domain-containing protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AWQ31569.1\|1478504_1478666_-	DUF1270 domain-containing protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AWQ31570.1\|1478764_1479448_-	phage repressor protein	A9CR56	Staphylococcus_phage	5.2e-107	85.6
AWQ31571.1\|1479508_1479715_+	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
AWQ31572.1\|1480138_1480414_-	hypothetical protein	NA	NA	NA	NA
AWQ31573.1\|1480440_1480659_-	DUF739 domain-containing protein	A0A2I6PE94	Staphylococcus_phage	8.3e-19	62.5
AWQ31574.1\|1480826_1481219_+	helix-turn-helix domain-containing protein	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
AWQ31575.1\|1481365_1481749_+	hypothetical protein	NA	NA	NA	NA
AWQ31576.1\|1481760_1482456_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
AWQ31577.1\|1482508_1483636_+\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	6.2e-33	31.4
AWQ31578.1\|1483775_1485116_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
1483705:1483828	attR	NA	NA	NA	NA
AWQ31579.1\|1485134_1485503_-	MerR family transcriptional regulator	NA	NA	NA	NA
AWQ31580.1\|1485745_1486984_-	hypothetical protein	NA	NA	NA	NA
AWQ31581.1\|1487002_1488241_-	GTPase HflX	NA	NA	NA	NA
AWQ31582.1\|1488352_1488829_+	glutathione peroxidase	Q70H87	Fowlpox_virus	7.9e-22	37.3
AWQ31583.1\|1489050_1489284_-	RNA chaperone Hfq	NA	NA	NA	NA
AWQ31584.1\|1489298_1490234_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
AWQ31585.1\|1490251_1491166_-	alpha/beta hydrolase	NA	NA	NA	NA
AWQ31586.1\|1491315_1492989_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
AWQ31587.1\|1493146_1494643_-	glycerol kinase	NA	NA	NA	NA
AWQ31588.1\|1494771_1495590_-	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	2.4e-26	35.1
AWQ31589.1\|1496064_1496607_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
AWQ31590.1\|1496612_1498622_-	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	2.8e-60	30.7
AWQ31591.1\|1498634_1501253_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	8.5e-41	23.7
AWQ31592.1\|1501555_1502047_-	energy coupling factor transporter S component ThiW	NA	NA	NA	NA
AWQ31593.1\|1502073_1502439_-	hypothetical protein	NA	NA	NA	NA
AWQ31594.1\|1502439_1503984_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA

DBSCAN-SWA_8

1739859 : 1748332

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ31818.1\|1739859_1740426_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AWQ31819.1\|1740428_1741457_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AWQ31820.1\|1741449_1742934_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AWQ31821.1\|1742912_1745102_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-141	39.8
AWQ31822.1\|1745094_1745766_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AWQ31823.1\|1745767_1746031_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AWQ31824.1\|1746030_1746735_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AWQ31825.1\|1746738_1747863_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AWQ31826.1\|1747849_1748332_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_9

1767284 : 1783647

Staphylococcus_phage(33.33%)

holin,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ31843.1\|1767284_1768295_+\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.2e-16	32.3
AWQ31844.1\|1768376_1769558_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
AWQ31845.1\|1769595_1769925_+	staphostatin B	NA	NA	NA	NA
AWQ31846.1\|1770162_1770984_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
AWQ31847.1\|1770976_1771780_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
AWQ31848.1\|1771766_1773440_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA
AWQ31849.1\|1773426_1774638_-	isochorismate synthase	NA	NA	NA	NA
AWQ31850.1\|1774714_1774819_-	hypothetical protein	NA	NA	NA	NA
AWQ31851.1\|1774969_1775908_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AWQ31852.1\|1775959_1776511_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWQ31853.1\|1776600_1776891_+	NINE protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
AWQ31854.1\|1776954_1777086_+	hypothetical protein	NA	NA	NA	NA
AWQ31855.1\|1777131_1778091_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AWQ31856.1\|1778578_1778935_+	DoxX family protein	NA	NA	NA	NA
AWQ31857.1\|1779023_1779161_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
AWQ31858.1\|1779301_1779592_+	hypothetical protein	NA	NA	NA	NA
AWQ31859.1\|1779679_1780321_-\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-19	33.0
AWQ31860.1\|1780317_1780638_-	hypothetical protein	NA	NA	NA	NA
AWQ31861.1\|1780640_1782605_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
AWQ32903.1\|1782648_1782921_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
AWQ31862.1\|1782930_1783032_-	hypothetical protein	NA	NA	NA	NA
AWQ32904.1\|1783545_1783647_-\|holin	putative holin-like toxin	NA	NA	NA	NA

DBSCAN-SWA_10

2001080 : 2015810

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ32067.1\|2001080_2001842_-	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6
AWQ32068.1\|2001838_2002795_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWQ32909.1\|2002781_2003753_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	2.1e-138	78.3
AWQ32069.1\|2003791_2003947_-	hypothetical protein	NA	NA	NA	NA
AWQ32070.1\|2004223_2004328_-	hypothetical protein	NA	NA	NA	NA
AWQ32071.1\|2004460_2005432_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AWQ32072.1\|2005549_2007655_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWQ32073.1\|2007617_2008016_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWQ32074.1\|2008165_2008432_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AWQ32075.1\|2008816_2009683_+	EamA/RhaT family transporter	NA	NA	NA	NA
AWQ32076.1\|2009702_2010203_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWQ32077.1\|2010232_2010478_+	hypothetical protein	NA	NA	NA	NA
AWQ32078.1\|2010543_2012049_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWQ32079.1\|2012126_2012228_-	hypothetical protein	NA	NA	NA	NA
AWQ32080.1\|2012317_2013235_+	lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AWQ32910.1\|2013647_2013743_-	hypothetical protein	NA	NA	NA	NA
AWQ32081.1\|2013914_2014457_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWQ32082.1\|2014751_2015810_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.5e-20	27.3

DBSCAN-SWA_11

2027781 : 2035601

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ32092.1\|2027781_2028933_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	3.5e-23	36.1
AWQ32093.1\|2028916_2029510_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
AWQ32094.1\|2029860_2030529_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWQ32095.1\|2030530_2030950_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWQ32096.1\|2030953_2031667_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWQ32097.1\|2031765_2032350_+	hypothetical protein	NA	NA	NA	NA
AWQ32098.1\|2032629_2033070_+	hypothetical protein	NA	NA	NA	NA
AWQ32099.1\|2033411_2033885_+	DoxX family protein	NA	NA	NA	NA
AWQ32100.1\|2033859_2034546_+	DNA-binding response regulator	NA	NA	NA	NA
AWQ32101.1\|2034545_2035601_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

Anti-CRISPR protein detection

Acr_ID: CP029629.1|AWQ32079.1|2012126_2012228_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP029629.1|AWQ32079.1|2012126_2012228_-|hypothetical-protein

2012126_2012228_-

33 aa aa

2001080-2015810

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP029629_5	Unclear	5.1\|1967189\|25\|CP029629\|PILER-CR	1967189-1967213	25	2013775-2013751	1

1. spacer 5.1|1967189|25|CP029629|PILER-CR matches to CP029629 position: 2013775-2013751, mismatch: 1

attggatttccaatttctacagaca	CRISPR spacer
attggattcccaatttctacagaca	Protospacer
********.****************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029629

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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