CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	9 crisprs	csa3,RT,DEDDh,DinG,cas3	1	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP020649_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_1

994318-994402

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP020649_1

>merge|CP020649|1|994318-994402|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAGTGTGCCTGTCCCCGCGGGGACAG

>CP020649|1|1|994318-994402|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCAGGCTAGTGTTCATGGCGTATGACAG
TGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP73780.1\|985688_988208_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|236772
CP020649.1\|AWP73793.1\|998915_999713_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|273651
CP020649.1\|AWP73789.1\|995266_996157_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
CP020649.1\|AWP73797.1\|1002086_1003103_+\|thiamine-monophosphate-kinase	unknown	unknown	gnl\|CDD\|235583
CP020649.1\|AWP73782.1\|988598_989816_-\|transporter	unknown	unknown	gnl\|CDD\|281578
CP020649.1\|AWP73781.1\|988204_988591_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281474
CP020649.1\|AWP73788.1\|994448_995270_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
CP020649.1\|AWP73787.1\|992611_994210_-\|inorganic-triphosphatase	unknown	unknown	gnl\|CDD\|143624
CP020649.1\|AWP73792.1\|998082_998910_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP020649.1\|AWP73785.1\|990648_991269_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
CP020649.1\|AWP73795.1\|1001047_1001575_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
CP020649.1\|AWP73794.1\|999858_1001034_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|237587
CP020649.1\|AWP73783.1\|989812_990064_-\|ferredoxin	unknown	unknown	gnl\|CDD\|319871
CP020649.1\|AWP73779.1\|984921_985260_-\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
CP020649.1\|AWP73784.1\|990118_990628_-\|phosphopantetheine-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
CP020649.1\|AWP73786.1\|991338_992565_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
CP020649.1\|AWP73796.1\|1001582_1002047_+\|N-utilization-substance-protein-B	unknown	unknown	gnl\|CDD\|234686
CP020649.1\|AWP73778.1\|984418_984925_-\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176905
CP020649.1\|AWP73791.1\|996926_997934_-\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270291
CP020649.1\|AWP73790.1\|996153_996924_-\|phosphonates-import-ATP-binding-protein-PhnC	unknown	unknown	gnl\|CDD\|213223

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP73780.1\|985688_988208_+\|AsmA-family-protein	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	1.12008e-29
CP020649.1\|AWP73793.1\|998915_999713_-\|HAD-family-hydrolase	gnl\|CDD\|273651	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB. This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class II subfamilies are characterized by a domain that is located between the second and third conserved catalytic motifs of the superfamily domain. The IIB subfamily is distinguished from the IIA subfamily (TIGR01460) by homology and the predicted secondary structure of this domain by PSI-PRED. The IIB subfamily's Class II domain has the following predicted structure: Helix-Sheet-Sheet-(Helix or Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing OMNI\|TC0379 and OMNI\|SA2196 whose relationship to the other groups is unclear. [Unknown function, Enzymes of unknown specificity].	7.51884e-15
CP020649.1\|AWP73789.1\|995266_996157_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.14802e-90
CP020649.1\|AWP73797.1\|1002086_1003103_+\|thiamine-monophosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	1.95453e-132
CP020649.1\|AWP73782.1\|988598_989816_-\|transporter	gnl\|CDD\|281578	pfam03594, BenE, Benzoate membrane transport protein.	3.72852e-112
CP020649.1\|AWP73781.1\|988204_988591_+\|hypothetical-protein	gnl\|CDD\|281474	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain. This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.	7.15282e-08
CP020649.1\|AWP73788.1\|994448_995270_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.08607e-97
CP020649.1\|AWP73787.1\|992611_994210_-\|inorganic-triphosphatase	gnl\|CDD\|143624	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup have not been characterized.	4.79262e-56
CP020649.1\|AWP73792.1\|998082_998910_-\|transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.15813e-52
CP020649.1\|AWP73785.1\|990648_991269_-\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	2.15121e-57
CP020649.1\|AWP73795.1\|1001047_1001575_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	4.04555e-65
CP020649.1\|AWP73794.1\|999858_1001034_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
CP020649.1\|AWP73783.1\|989812_990064_-\|ferredoxin	gnl\|CDD\|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	1.53234e-06
CP020649.1\|AWP73779.1\|984921_985260_-\|transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.51065e-15
CP020649.1\|AWP73784.1\|990118_990628_-\|phosphopantetheine-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.03384e-101
CP020649.1\|AWP73786.1\|991338_992565_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	9.59509e-176
CP020649.1\|AWP73796.1\|1001582_1002047_+\|N-utilization-substance-protein-B	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	1.22823e-51
CP020649.1\|AWP73778.1\|984418_984925_-\|polyketide-cyclase	gnl\|CDD\|176905	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	7.32648e-83
CP020649.1\|AWP73791.1\|996926_997934_-\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270291	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold. This subfamily includes putative periplasmic binding component of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.92107e-151
CP020649.1\|AWP73790.1\|996153_996924_-\|phosphonates-import-ATP-binding-protein-PhnC	gnl\|CDD\|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	6.7095e-115

>CP020649.1|AWP73787.1|992611_994210_-|inorganic-triphosphatase
MSEQELKLHVPAAARAAVQQQIQQRQAARIRLHAMYFDTPGRELARARIAIRLRQEGRDWVQTLKMPGANAISRVEINHPRPGPVLDLSVYAGTEAQAALTAIKGELGLRYETDVQRLFCKVRGRHGTVELAYDTGVLRAGALELPISELEFELVSGRPAAIFAMARSWLQRHGLVLDARSKSERGDALAQLAHDLAAAPGEADDAARATRDQQAVAGFWAPRNAGAVKLDESMTPMQAMAAVAAECVDHIARNTAVLAEVDTLGVYRAGTPEHVHQLRVGVRRLRSAWRLFDGWVADPSETLAQGARTHFSAFGMARDQDVLADTIMPLLARAGMPALPAEAAPSNDNAQSLAADRAFQGWLLELLAWSLDVPPPPAPAATAEAAPASPTIIPLAPPAEAAPPALRKRLTGRLRRWHLKVIDEGLRFGALELEARHELRKRVKRLRYGLSFAESLLPAARLRTYRKQLARVQDLLGEINDLAVARDYYQAALQAHPQAWFAVGWIGARLDGLTPQAQEAFDQLARAKPFWK
>CP020649.1|AWP73786.1|991338_992565_+|signal-recognition-particle-docking-protein-FtsY
MPMFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPAPMPAPQPEPQPEPQPQQPPEPAPPAMASPPVAEPQPPVAESQPPVAEPQPPVAAAPEAPRKASWLSRLKQGLSRTGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLGRAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD
>CP020649.1|AWP73785.1|990648_991269_-|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MKPSRLGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNWLNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQVQMVERDRGAAAALRTLRDKLQAGAVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVESETAPAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH
>CP020649.1|AWP73784.1|990118_990628_-|phosphopantetheine-adenylyltransferase
MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFFTIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQNGRVIIRGLRAVSDFEYEFQMAGMNRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKERREQSAQGGA
>CP020649.1|AWP73783.1|989812_990064_-|ferredoxin
MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHHDEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLTGAA
>CP020649.1|AWP73782.1|988598_989816_-|transporter
MNGADSASSPLAARRPVTGALSLSAIVAGLVAVLVSFGGTAVLMVQAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRMPVVFAWSTPGAALLVTGLVGVPFDQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQPVLVLSMCAAYLLGRRWAPRFAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFTWQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLVGLTGLAGLLAAPFGAHSVTLGAIIAALCAGPEAHADPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAGLALLGAIMGGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAWRRARSA
>CP020649.1|AWP73781.1|988204_988591_+|hypothetical-protein
MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPS
>CP020649.1|AWP73780.1|985688_988208_+|AsmA-family-protein
MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQARYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSPDVFASIDSMRLAVAVWPLLSNSLVVDHVTINGFKARVIRGKDGHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIVNGTVSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVEGGNPRLDAGLTGQAQLTLDPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTSSLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPHKTELQIDKLAVRAKGAMPGGPFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTLKQGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLKDQANARINAVLEGGKFDLSADIVALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAGDGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPAASGTIKIGQLVMRGLKAEQVAANIKLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTLSGTGSLAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHDPTVQDDQTRQTDFTSLESDLVFNKGVATVKRLDMAAPLLRVNQGNPANIDFVRSELDFVARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAGEALKRGLEKQLKEALTGGEGASGSPAKNIDKALKGILGK
>CP020649.1|AWP73779.1|984921_985260_-|transcriptional-regulator
MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMALPSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLGMAEHWMTRQRAIWERRLDQLDLYLQDLKEQKR
>CP020649.1|AWP73778.1|984418_984925_-|polyketide-cyclase
MTRQHSTQPDPKLDLVLERTIDVPPALVWQAWTQPEHIKHWLTPAPWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCYLEIVEGSRLVWTNALLPGFRPAGGGGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAHARNMQQAS
>CP020649.1|AWP73788.1|994448_995270_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMADLLRRMWPIDWSYYPEGVHAALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSIGFVGKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALNLFQWDRVALVLAAIFIVVVAAEIVITQARKRIL
>CP020649.1|AWP73789.1|995266_996157_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWARFETGLGHAATFLARMFPPNFEKPDTLWKGIAESLEIAVLASVLGILLSLPIGLLGARNLMPAWASWPARALVALCRALHPVIVAILFVKAVGFGALAGILALTVASIGFIGKLFTEAIEEISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAGGIGGTLFSAFQRFDYDFVAAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTAARGLGSTTPLARKGEVDE
>CP020649.1|AWP73790.1|996153_996924_-|phosphonates-import-ATP-binding-protein-PhnC
MATSLRITGLVKEYRAGKPVLNGIDLDIAGQGLTAIIGPSGTGKSTLLRCINRLIEPTSGEIVLKDAEGTVDLARVRGQSLRRARRRIGMVFQEYNLVERLTVMENLLTGRLGYTSALNAWMRRFDPADIERAFQLLDTVGLAGFADQRADALSGGQRQRVGIARALMQRPQLLLADEPTSSLDPKTSVEIMELLTEQGSVNGIPVLVNIHDVELARRYANRIVGMSGGHVVYDGDGKGLDATMLKTIYGGESWLE
>CP020649.1|AWP73791.1|996926_997934_-|phosphonate-ABC-transporter-substrate-binding-protein
MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKDLVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIFKPFTKHLSECTGKRVVFYQVQSNAAEIEAMRSGRLHVGGFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSPYQKLTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYDAAAVASDVFKRMAERGQVKEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYRFPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFNRAAYDRETAKSKGKQ
>CP020649.1|AWP73792.1|998082_998910_-|transcriptional-regulator
MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLRDLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQYELGPFALQMGLVSLQRLDPVRVALPEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQVFAAWLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDALSVPVFDHTGGIVLALTSLGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN
>CP020649.1|AWP73793.1|998915_999713_-|HAD-family-hydrolase
MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQAGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAFYYAYDRSARRMNAHYWADAATRAANRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDGAVGRIVEIFHEAGAQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLNIDSALQHTLFIGDSPNDEPMFKFFPISVGVANIQSQLHRIQHRPAFVAAARGGDGFVEMAERLLANRG
>CP020649.1|AWP73794.1|999858_1001034_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MSAQISSLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDRENEGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEERCRQLDLPLMASRNGTRYGTNFTQSIEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHTEAGCDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESIIARMGERMMQTPWGDFRCIAYRDDATRSPHLALVHGNIDPERETLVRVHEPASLLDVLDTGASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQIANWAGPAERAAAQEGDRFGLRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCAPPNLRND
>CP020649.1|AWP73795.1|1001047_1001575_+|6,7-dimethyl-8-ribityllumazine-synthase
MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGVDERDVMVVSVPGALELGVALARMAESYEFDALIALGAVIRGETYHFEVVSNESAAAISRIALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDEDDEDEDFDDEEDDGR
>CP020649.1|AWP73796.1|1001582_1002047_+|N-utilization-substance-protein-B
MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPVLRERFLPYIDRPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR
>CP020649.1|AWP73797.1|1002086_1003103_+|thiamine-monophosphate-kinase
MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVATSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAAMGARPVGCLLGLALPGVDEAWLAAFARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDVWVSGELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLLQDLGHILAASGVAAELRYDALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQAIGQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPGGFDHFSDATDQPAPGRRP

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Crispr_ID: CP020649_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_2

1217802-1217894

Orphan

Consensus_repeat	Method
CAGGCACCCGCGGCATGCAGCCTGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020649_2

>merge|CP020649|2|1217802-1217894|CRISPRCasFinder
CAGGCACCCGCGGCATGCAGCCTGCTGCTTGCCGCGGCCCGCGTGGCGGGAGCCAGACACCCTCTCCAGGCACCCGCCGCATGCAGCCTGCTG

>CP020649|2|2|1217802-1217894|CRISPRCasFinder
CAGGCACCCGCGGCATGCAGCCTGCTG	CTTGCCGCGGCCCGCGTGGCGGGAGCCAGACACCCTCTC
CAGGCACCCGCCGCATGCAGCCTGCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP73987.1\|1208331_1208853_-\|acyl-dehydratase	unknown	unknown	gnl\|CDD\|239530
CP020649.1\|AWP73991.1\|1213219_1214194_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
CP020649.1\|AWP73988.1\|1208849_1210016_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
CP020649.1\|AWP73986.1\|1207553_1208330_-\|citryl-CoA-lyase	unknown	unknown	gnl\|CDD\|235748
CP020649.1\|AWP73990.1\|1211056_1213165_+\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|223972
CP020649.1\|AWP73992.1\|1215255_1215879_+\|flavin-reductase	unknown	unknown	gnl\|CDD\|224766
CP020649.1\|AWP73989.1\|1210045_1210798_-\|beta-ketoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|235546
CP020649.1\|AWP73985.1\|1206684_1207425_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP020649.1\|AWP74001.1\|1224720_1225422_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP020649.1\|AWP73994.1\|1217939_1218809_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
CP020649.1\|AWP74003.1\|1226819_1227281_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP020649.1\|AWP74002.1\|1225731_1226721_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|270296
CP020649.1\|AWP73997.1\|1220064_1221297_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340968
CP020649.1\|AWP73999.1\|1222299_1223271_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
CP020649.1\|AWP77526.1\|1214205_1215255_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
CP020649.1\|AWP73996.1\|1219564_1220068_+\|tRNA-specific-adenosine-deaminase	unknown	unknown	gnl\|CDD\|223663
CP020649.1\|AWP73998.1\|1221244_1222147_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP020649.1\|AWP73993.1\|1215893_1217645_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
CP020649.1\|AWP74000.1\|1223309_1224683_+\|amidase	unknown	unknown	gnl\|CDD\|223232
CP020649.1\|AWP73995.1\|1218879_1219575_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223738

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP73987.1\|1208331_1208853_-\|acyl-dehydratase	gnl\|CDD\|239530	cd03446, MaoC_like, MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.	5.90508e-45
CP020649.1\|AWP73991.1\|1213219_1214194_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	9.79009e-121
CP020649.1\|AWP73988.1\|1208849_1210016_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	8.02577e-111
CP020649.1\|AWP73986.1\|1207553_1208330_-\|citryl-CoA-lyase	gnl\|CDD\|235748	PRK06224, PRK06224, citryl-CoA lyase.	2.59617e-109
CP020649.1\|AWP73990.1\|1211056_1213165_+\|acyl-CoA-synthetase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	9.06276e-120
CP020649.1\|AWP73992.1\|1215255_1215879_+\|flavin-reductase	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	2.52541e-31
CP020649.1\|AWP73989.1\|1210045_1210798_-\|beta-ketoacyl-ACP-reductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.02972e-101
CP020649.1\|AWP73985.1\|1206684_1207425_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	8.31105e-43
CP020649.1\|AWP74001.1\|1224720_1225422_-\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	9.30426e-109
CP020649.1\|AWP73994.1\|1217939_1218809_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	2.65005e-43
CP020649.1\|AWP74003.1\|1226819_1227281_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.17932e-44
CP020649.1\|AWP74002.1\|1225731_1226721_+\|MFS-transporter	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.75849e-150
CP020649.1\|AWP73997.1\|1220064_1221297_+\|MFS-transporter	gnl\|CDD\|340968	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Escherichia coli cyanate transport protein CynX and similar proteins. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The gene encoding CynX is part of the cyn operon that also includes cynS, encoding cynase, which catalyzes the reaction of cyanate with bicarbonate to give ammonia and carbon dioxide, and cynT, which encodes a carbonic anhydrase. The CynX-like subfamily belongs to the 2-nitroimidazole and cyanate transporters like (NIMT/CynX-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.24092e-95
CP020649.1\|AWP73999.1\|1222299_1223271_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.99161e-136
CP020649.1\|AWP77526.1\|1214205_1215255_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.02789e-93
CP020649.1\|AWP73996.1\|1219564_1220068_+\|tRNA-specific-adenosine-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	8.46951e-36
CP020649.1\|AWP73998.1\|1221244_1222147_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.85654e-93
CP020649.1\|AWP73993.1\|1215893_1217645_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	2.20392e-141
CP020649.1\|AWP74000.1\|1223309_1224683_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	4.19749e-79
CP020649.1\|AWP73995.1\|1218879_1219575_+\|hypothetical-protein	gnl\|CDD\|223738	COG0666, Arp, FOG: Ankyrin repeat [General function prediction only].	1.40028e-19

>CP020649.1|AWP73993.1|1215893_1217645_+|acyl-CoA-dehydrogenase
MSQYRAPWGDIEFLLEHVFARDGQAALDLDLARSVAHEAGKFAQAFLEPVNRRGDQAGARLEQGAVVTPPGFARAYAAFCEAGWNGLRHPERFGGQGLSAVLSTLTEEIWHACNASFALCPMLTGGAIEALLAAADPVLQARLLPRLVSGEWTGTMNLTEPGAGSDLGAVKTRAVARGDGTYAITGQKIFITYGDHDMAANIIHLVLARIPDAPAGVKGLSLFAVPRHLLRDDGSPGEPNRVACVALEHKLGIHGSPTAVMQFGDDEGATGYLVGAPNDGLKTMFVMMNEARHAVGIQGLALSERAYQHAVWYAGERRQGRIVGEDGSRGDTILRHPDVRRLLLGIKSRIDAMRALAIYLALQRDQAHGGAQASPRAAAQARLDLLVPVMKGWFTETAQRATYDAMQVFGGMGYIEETGAAQYYRDARILTIYEGTTAIQANDLVGRKTVRDQGAEALRLLDEIAAAARPGLDGEGLGEALGAACADLRAAVDAILEQAGSAPRAAYAGGVPYLELWGVVAGGWMHALRARAAARLPEARRQAVLASAAFYARHVLPQAAALRQAIVQGGTQADAYPDDCWVG
>CP020649.1|AWP73992.1|1215255_1215879_+|flavin-reductase
MDAPRTGLDAAGLSARETYRLLTSCLVPRPIAWVSTCDARGTGNLAPFSFYTMVSTVPPLIALSISLHQGQEKDTLANIRQTGEFVVNVVTRELLAPMHACGERHAPGVDEAQLLGVRMRPSQRVRPAGVALSPVRLECRLSQALEFGVHAARLVVGEVLHFSIDSEYMRDGRLDGARLDPVCRLGGPWYGVLGERLAAPDPSTPST
>CP020649.1|AWP77526.1|1214205_1215255_+|CoA-transferase
MTRAAPLAGISVVDFSELLPGPFLTQNLLELGATVVKVERPPHGDNARRLYPGVYASVNRGKRGEMLDLKQAEGRARARELVAGADVLVEGFRPGVMARLGLDYEQARALNERLVYVSLSGYGQDGPQARQPGHDINYLAAAGALALAGSDPAEPAPGAGLPVADLCGAMYALSSTLAALLQRQHTGRGQWLDVALADCVMHWMNPRLGQFASAGLATLAQQRHDVLCKPAYGVFRTADDAHVAIAALEDHFWQALRGALPLAGLAGPLATYREREAQAGPINDALARAVRGRTCQALMEVLTAADVPVSRVELPGELGQSALARQRGLFDAGDGYARYPVRLDHMGAA
>CP020649.1|AWP73991.1|1213219_1214194_+|ABC-transporter-substrate-binding-protein
MFNKHAFIAALAALAACIAAPAQAAEAYPERPIRFVVPFTAGGITDNVARTVGARAAELLGQPIIVENRAGAGGNIGTEYAANSKPDGYVIFLGTQGTQVTNPLLYTSAPSSADRLQAVQGLTAIPNIVVVNAERPYDTLAKVVDYARANPGKLNNSSAGAGTGTHLAAELFQSVVDVKFSHIPFKGSAPSITALIGGQVDLSFDYPVSTEAYVKAGKIRAVAVTGEARLGSLPDVPTLAELGYPQATSVSWMGVFVPAGTPDAVTARLRQAFAAAIAEPQVAAKLVEFGGVPLQKSGADFTAFVQDEAVKWGKVVKAAGVKLD
>CP020649.1|AWP73990.1|1211056_1213165_+|acyl-CoA-synthetase
MFQNLAPLFAPESLVLIGASDRPASIGQRTLVNIVEHSRFDGELFLVNATKDEVMGRRAYRSVLDLPYAPQTAIVVVPAKAAVEVLAECGRKGVRFAIVLSSGFGETGEAGRQLEEQMRAIVRETGLRIYGPNCPGMTNNNRGLGFTFSPAYQYDRMAGPIGLVTQGGGLGRTFLQACGRGVGIGLWCSSGNEADLTASDYINHMVEMPEIKVIVALLEGINDPPRFARAALNAARQGKPIVALKVGKSAYGVQATQSHTAALSGSAEVNSAAFRQLGIVEVDDIDELIDTAALLARGAPARPIRAAVYSFSGGTVALAADMLGSAGLELSRFEPATRQALAGMLPSYAAIDNPVDTTAEILVQSDISYGSLLCVARDPNVDVVLYPIPMEYGDTTLAACRNMVKAQAEVAVPIVPVWMSDKLGAGFQCLVDAGLTPVRTLGKSVKALAHWNRYGQWMRRFERDWEPSVVKTAAADAAARSEPRAYAEREAKQMLADAGVAVPFGQVCRSADEAVRAAAQCQGPVVAKIVSAQILHKSDIGGVAVGLRTPQQVRDAWETIDANARAACPDARIDGILIEQMIGGPGVETLVGVHEDPLFGHVMTFGLGGVYVEVFKDVSRRLLPLTPQDARDMIRETRCHQLLQGCRGQAAADIEALERLLLAVSGFVVDGPWHIKELDLNPVLAGPAGATALDAVLIGAPR
>CP020649.1|AWP73989.1|1210045_1210798_-|beta-ketoacyl-ACP-reductase
MDLKIAGKVAVVTGSGRGIGAQTVRTLAEEGARVVVTDINEETARETAARLSADGHEAIGVKCDVCRREDVDALVAAATKAYGGVDILVNNAGFTRDQYLGKMSEDDWDAVVDTIIKGAFHCSRAVLPGMMQKRWGRIVNIASRSVFGNPGQTNYTTAKLGLVGFTRALSLEQAKFGITVNAIAPGFVETELMRSLPTYERLRDGALARNPVGFLGQPGDIADAVAFIASERARYITGVTLYVTGGRFSS
>CP020649.1|AWP73988.1|1208849_1210016_-|acyl-CoA-dehydrogenase
MDFDFDSNQQALRDSIRRYLKAEVAPRIDACEAERRIPQDLLQGLAQFGYIGGLLPEDAGGFDLDFVTWAMMVEEAGYCWGSLRTIVNITNIFLRLVQGHGTARQRERFLAPVLASEKSVCVAISEPNHGSNVAGIECRADDRGDHYLLNGSKLWITNGVNADCAIVLARTYSDTCQGKPSLFLVERAASPYAARLVDKMVLKASGTSELSFDDVRVPKENLLGAEGVALKTMLAGLNYGRLNIAMGAVGAAQAALDLSVEYAKTRRQFGRPIGEFQLIQKHIVDMMVRTEAARALGYKAAAAMQKGQPARIECSIAKLYAAEAAHEVARIALSVHGGLGYSTEYPLERIFRDTSGGIIPEGTAEVQTLIVGREVLGMSAINAAENKA
>CP020649.1|AWP73987.1|1208331_1208853_-|acyl-dehydratase
MTVIDTLPPAALEALRYDWEDLEPGLMVESAARTITESDVVSFAALSGDYNRLHTDAVYAGASKFGQRIAHGMLVASIMSGLNTRTVLNQCLEPSILGLLEMTYRFTRPTFVGDTIKVRITVTARRPSSDPGRGVVEFERLGINQHGDTVCACVAKLLVARRAPSPNSQPNEA
>CP020649.1|AWP73986.1|1207553_1208330_-|citryl-CoA-lyase
MVKTEIGYTTPERITVRGKDLANELLGQVDFVDMMLMTIFGHLPSAAEKTMVNHILVTACDHGLTPSAMSARLTYLGAPEAMQAAVAAGLLGAGSVFLGTTQNCAEILAAGGAGLAPEAPQEEVDAAARALMAASREKKQPIYGIGHPIHIDGDPRVPTLRRLARELGYYGKHWRLMEAVQRVFLQDKGKNLPMNAVGAVGAIICDMGLDPMIARGLMLVGRAGGLVAHLYEERQDPIGQQLWDLVLAQDPRNVAPAR
>CP020649.1|AWP73985.1|1206684_1207425_-|IclR-family-transcriptional-regulator
MPTFVSAAARAMAVFEVFAREKRELSNSDLARLLELPDSSCLDLLHTLHQLGYLLRTQSRRYYPTGKLLQAAQQISTFDLVVHATRDALEQLSQQTGETAYVGRIEGAAVKIVAVREGRYPLRYILNLGERIALHASAMGKALLGRLPPDEARRLLKTKQLRRLTPTTVTEPEDLLEEVLASRERGWYHTRGEGSDGADALAVSGLLSNEPIAIAISGPSDRFSANRDDYVAALRAVAARLFPDDA
>CP020649.1|AWP73994.1|1217939_1218809_-|LysR-family-transcriptional-regulator
MLDPVLLRSFVTVVDTGNFTRASEHLHLTQSTVSQHVIRLEENLGCRLLDRGQRHVLPTEEGERLLGYARSILRLADEARESVAAAQGNAVLRLGAPEDFMGAALMPVLAPLLARYPLLRLEFDSGLSHQLLRRYRDGELDLLLVKQWEVDADCQAHWPEPLRWVAARDGPTLPAGEAVPLVVFPAGALYRQEMTRTLEAGGRPWHIRYASTSLAGLVAAVGAGLGVSLLPAASAGSQLRVLRKRDGFAPVDGLQLGLYARARLGAAGRDLRDALAAHCGQRATAMAGA
>CP020649.1|AWP73995.1|1218879_1219575_+|hypothetical-protein
MFKHGGLDMPIIRFYRCWLAAFLVSLGGASVAAGDAGQALLRAAADGDAARVKTLLADGAPLEARDAQGNTPLLRATQGNHVEAAGALVEAGADVNAQNRIQDSAYLLAGARGYRDILALTLAHGADLESTNRYGGTALIPACERGHVEVVDMLLRAGVDPDHVNRLGWTGLLEAIILGDGGTRHQAIVARLIEGGADVNLADGDGVSPLRHARQRGQAAIVQLLEAAHAR
>CP020649.1|AWP73996.1|1219564_1220068_+|tRNA-specific-adenosine-deaminase
MRADSNPGVAAPDDDTLLREAIALARANARAGGRPFGALVARDGVVLARGVNRMLADHDPTAHAELLALREAGRALRSARLDGCVVYASGQPCPMCLAAMRMSGVARAVYAYSNEQAEPYGLSTAALAAELALPPQRQPGFAFEHRPGAAGPDADLYREWRDGPHAP
>CP020649.1|AWP73997.1|1220064_1221297_+|MFS-transporter
MTAARWGAAPRAWAMLAVVALIGLNLRPFLTGPGTVLAGIEADTGLGHLGASMLTVLPMLLMGVGALLAPAIQARVGTRRGVLAALLALALGSALRLAAWDGALLVGTAALCGLGVAYIQAVFPGVIKDRFPGRMAAVMGVYSAMMMGGGALGARLTSRLAGGAGDSWRVALAWLAVPALIAFAAAWRCLAETPAARRDGALAGTLMRRPRTWLLIAAFGLVNGGYSSMVAWLAPAVQAQGWSIAQSGDLMVAMTIAQAAAALALPVLAARRADRRPWLYATLSMQAAGFAGMAFWPAAAPLAWAVIGGAGLGGCFALTFIAALDHFSQAEPAGVLAALMQGGGFLIAALAPFAVAALRAASGGFAAGWAMHLACVAIACLLYRRLDPARYARVMAAEPGAAATRRAPSA
>CP020649.1|AWP73998.1|1221244_1222147_-|LysR-family-transcriptional-regulator
MDGLPPLNAVRTFEVAGRLCSITEAAAELCVTPSAVSRQIRLLEEHLGRKLFVRQHRGVVLTTIGHQYLGDISKALVEVRRATSEAARPRQRAVFTVRAPHSIAMRWLLPRLARFHAAHPHIDVKLHTSLTPPDFEREDLDAGVMLGRGQWKGLVSHMLIRNELIPVCAPHKARALRDPADLADETLLHVFGRPDDWVAWLGAAGVRHVDVQRGMKYESSALAYEAALEGYGIAIAQKALIDKDLQEGRLVTPFDLSVDQGDYTYYFVLPPEGYKRRSPALDTFRRWVRDVSLPRQAPPP
>CP020649.1|AWP73999.1|1222299_1223271_+|hypothetical-protein
MRLACARWLLACMAPLAGAAAVAETYPARPVTIVVPTTAGGTADILARLIGPKLTALWGQPVVVENRSGAGTLIGTEFAARAQPDGYTLMITYSELATLPALNKNARIDVVKDLTRVGKIGSLPVLILAHPSMPANTMDELVARLRADPGKYTYASNGIGSALQLYTEMFRQAAKVDIMHVPYRGALEASRAVLGGEVDLLVQLGNGNVIGYVTSGKAKAYAVASPQRLAALPDVPTTAEAGLPGLQLEAWYGLFAPAGLPPEQVEKLNRDLATVLAMPEIRDRLVSFGMQVQPGTPQQFDAFFHDEYQRWTRLIEDAGIQIN
>CP020649.1|AWP74000.1|1223309_1224683_+|amidase
MNYHPSTHTPLTFHDRTQAFLDGGDSPRDYLERCLDTIARREPVVQGWVVLNEAGAREAADASARRYREGRPLSAIDGMPVGIKDLIETRDMPTQMGSPAYTGNFPKRDSAVVRALREAGAIVLGKTVTTALGFLDPGPTTNAFDPERTPGGSSSGSGAVVGANMVPVAVGSQLVGSMLRPASFNANWVLKPTYGGMNRGERQGFSQSHVGIHAGSAQDMWTTSIEIVRRVGGDPGHPGLYGEAAPPAGRKPARLAVIETEGWERLDAASRAAFEAALERIAGQGVRIVRRADCSLVDGLERAIAQAGALSMRLISWEHHWSLKNMAEQHPGTLGPSLVRQLELGQDMTLERYRHDMLEREAARQRLAALATQCDALLSLASSGPAPRIADLRGTPYPTGDYSFSCVSSLLGAPAISVPALGVDGMPVGLQVIGQPHRDEQVTAIGRWLHELLAAPR
>CP020649.1|AWP74001.1|1224720_1225422_-|riboflavin-synthase
MFTGIVQGTATIAGIADRQGLRTFTIDFPAGFCVDLAIGASVSVDGVCLTVTRIVSADTATFDVMLQSLDITTLGGYAVGARVNVERAARDGAEIGGHPLSGHIDFAAAVERVRNMDNNRVLRIGIPPAFRKYVFAKGYIAVNGASLTVSEVDREEGWFEVWLIPETRRMTVFEEKQAGDALNIEIERSTQVVVDTVREAVQESLGRLQPVLEAILKEKGLSLEDFVRPPALK
>CP020649.1|AWP74002.1|1225731_1226721_+|MFS-transporter
MKSIQSRLLATWAVCAAAGMLAGPAVASGAAYPSKPVTMIVSFPPGGSSDFFTRLVANNLSKMWGQPVVVENRPGAGGNIGAQAGAHAPADGYTLYMSSINTHAINPGLYQNPGYDHIKDFAPISEIATVMNVLVVNPSVPAKSVGELLAYFKADPSKAFYASPGAGTSPHLSSELFKRMTDTPITHVPYKGSNAALTDVMAGMVPMAIDNLPAALAHIKAGKLRALAVTSPKRSPDLPDVPTMDEAGVKGYDVTTWWALFAPAGTPQPIIAKINKDVNALLALPDVKQSIARQGAEPAPSTPGELAQLVEKETARWGKVIKDAKVTID
>CP020649.1|AWP74003.1|1226819_1227281_+|AsnC-family-transcriptional-regulator
MDATDRKIIAILQENAETPIQSIADQVSLSTTPCWRRVQKLKESGVIRRQVALCDPVALNVGVTVFISVKTNQHSQAWLDRFADHVTDIPEVVEFYRMSGDIDYLIRVVVPDISTYDTVYKKLIRIADLHDVSSSFAMEQLKYTTALPVDYAS

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Crispr_ID: CP020649_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_3

1404583-1404670

Orphan

Consensus_repeat	Method
GGCACGCCGGGGAAGTGGCAGGCGTGGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020649_3

>merge|CP020649|3|1404583-1404670|CRISPRCasFinder
GGCACGCCGGGGAAGTGGCAGGCGTGGAGGTGGATCGGTGCCTGTCCCTGCGGGGACAGGCACGCCGGGGAAGTGGCTGGCGTGGAGG

>CP020649|3|3|1404583-1404670|CRISPRCasFinder
GGCACGCCGGGGAAGTGGCAGGCGTGGAGG	TGGATCGGTGCCTGTCCCTGCGGGGACA
GGCACGCCGGGGAAGTGGCTGGCGTGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP74164.1\|1413322_1414708_+\|fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|273816
CP020649.1\|AWP74165.1\|1414704_1416081_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377179
CP020649.1\|AWP74149.1\|1393648_1397083_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377502
CP020649.1\|AWP74156.1\|1403475_1403781_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379321
CP020649.1\|AWP74163.1\|1412284_1413304_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|270296
CP020649.1\|AWP74153.1\|1399176_1400643_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
CP020649.1\|AWP74167.1\|1418559_1419258_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP020649.1\|AWP74161.1\|1410415_1411135_+\|hydrolase	unknown	unknown	gnl\|CDD\|238497
CP020649.1\|AWP74150.1\|1397079_1397985_+\|carboxymethylenebutenolidase	unknown	unknown	gnl\|CDD\|223489
CP020649.1\|AWP77540.1\|1401630_1402638_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|273075
CP020649.1\|AWP74155.1\|1403106_1403412_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379321
CP020649.1\|AWP74159.1\|1406299_1408984_+\|aconitate-hydratase	unknown	unknown	gnl\|CDD\|236445
CP020649.1\|AWP74151.1\|1397993_1398425_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP74157.1\|1403904_1404495_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP020649.1\|AWP74166.1\|1416149_1417145_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP020649.1\|AWP74152.1\|1398661_1399165_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
CP020649.1\|AWP74162.1\|1411145_1412147_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
CP020649.1\|AWP74158.1\|1405206_1406100_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	unknown	unknown	gnl\|CDD\|119340
CP020649.1\|AWP74154.1\|1400758_1401634_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP74160.1\|1409008_1410382_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|238627

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP74164.1\|1413322_1414708_+\|fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	9.05494e-57
CP020649.1\|AWP74149.1\|1393648_1397083_+\|hypothetical-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	1.76692e-36
CP020649.1\|AWP74156.1\|1403475_1403781_+\|hypothetical-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.000241234
CP020649.1\|AWP74163.1\|1412284_1413304_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.63137e-114
CP020649.1\|AWP74153.1\|1399176_1400643_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.56285e-93
CP020649.1\|AWP74167.1\|1418559_1419258_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.67018e-41
CP020649.1\|AWP74161.1\|1410415_1411135_+\|hydrolase	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	9.42667e-40
CP020649.1\|AWP74150.1\|1397079_1397985_+\|carboxymethylenebutenolidase	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.68512e-65
CP020649.1\|AWP77540.1\|1401630_1402638_-\|biotin-synthase-BioB	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	1.16834e-174
CP020649.1\|AWP74155.1\|1403106_1403412_+\|hypothetical-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.000248775
CP020649.1\|AWP74159.1\|1406299_1408984_+\|aconitate-hydratase	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
CP020649.1\|AWP74165.1\|1414704_1416081_+\|hypothetical-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.59585e-95
CP020649.1\|AWP74157.1\|1403904_1404495_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.59284e-12
CP020649.1\|AWP74166.1\|1416149_1417145_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	8.03152e-150
CP020649.1\|AWP74152.1\|1398661_1399165_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	1.07728e-77
CP020649.1\|AWP74162.1\|1411145_1412147_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	4.74612e-64
CP020649.1\|AWP74158.1\|1405206_1406100_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	gnl\|CDD\|119340	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to form acetate and oxalate, an important pathway to produce oxalate in filamentous fungi. 2-methylisocitrate lyase (MICL) cleaves 2-methylisocitrate to pyruvate and succinate, part of the methylcitrate cycle for the alpha-oxidation of propionate.	7.82728e-95
CP020649.1\|AWP74160.1\|1409008_1410382_+\|dihydroorotase	gnl\|CDD\|238627	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.	1.43144e-141

>CP020649.1|AWP74157.1|1403904_1404495_+|TetR-family-transcriptional-regulator
MDTPSTNSTRDQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSVHYYFPCKDDLLYEAVENYTGSALETLRGISPTLPAKERLDAYIAMVESHSCQADQLCLGGMLAAELNTLPERVRAALQAFFTVEENWLANVLADGAREGTLRYASTPEKAARALFATVQGCLLGARLFQRPPDLREALGALYVQCGESPAH
>CP020649.1|AWP74156.1|1403475_1403781_+|hypothetical-protein
MNRIATALILSASVFGVAQAGELDYPPAIESAGTLSHAQVQAELQAARTQGLMAAGEQDYPVTAYAAASAVSREQVRNELAAARAQGLTESGELAYPPVAG
>CP020649.1|AWP74155.1|1403106_1403412_+|hypothetical-protein
MNRIATALILSASVFGAAQAGELDYPPAIESASTLSHAQVQDELLAARAAGQMNSAELAYPPVVEQAAAQVSRSQIRQELSAAKAQGLDASGELDYPPVAG
>CP020649.1|AWP77540.1|1401630_1402638_-|biotin-synthase-BioB
MHTAYIPVPTPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHRQHFDANTVQLSSLLSIKTGGCPEDCAYCPQSAHYDTGVDADKLMPLDEVVRAARAAQANGAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAGQLKAAGLDYYNHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQLANMEPYPESVPINNLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETMSDSEQALCFMAGANSIFYGDVLLTTGNPQVEADRRLLQRLGMRAEGLPCAAGQA
>CP020649.1|AWP74154.1|1400758_1401634_-|hypothetical-protein
MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAALCWLLLRPDAQALRQAMQGAPVLAALAVLLPTVFVAMARSVRHAGIVKSDAAQRLSLFIPLLAAFVLFGESLTARKLAAIALAFAALACLLRRRAPAGAAMQDAPEDRRAAWMWPLAVWAGYGVIDILFKQLARSGTAFSAGLLTTFVAAGLLTLAYLCIRRTRWQARHALAGVALGLANFGNILTYVRAHQSLPDHPALVFGAMNMGVITVGTLVGALAFRERLSALNLAGLALALAAIAAMLPW
>CP020649.1|AWP74153.1|1399176_1400643_+|MFS-transporter
MLYAAGHRGPRPVLPQADIRVPMLTTISSFSSLYFATLLMLIGTGLFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHRLIIRVGHIRAFVACAAVATSMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGLGTVLGQLALTAYATLDDGPLTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRVPLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVAAAVTAGLLSQWPMGWLSDRINRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVEPERRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVTGAHQVDEAPVHFVPMPDTLQSSPAAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPPAPGADSESTSAPQAGEQAAPDDTAARRTGT
>CP020649.1|AWP74152.1|1398661_1399165_+|peroxiredoxin
MTIKVGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIALFAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIWCVAVNDAFVMGAWGREQQAGGKVRMLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDAATMLAQA
>CP020649.1|AWP74151.1|1397993_1398425_-|hypothetical-protein
MTRHFLAALLLAAASGAASAQAGADPAGQAIFDQIVLTSGAANGAARTCGASPPDLAQHAETWRLNLRRYADEYHYAFDSFDERYARGQQEGAEMMADMRASGVDGCTGALASFQRERTMTYDEMKQAIAEATDGLPEDQPAD
>CP020649.1|AWP74150.1|1397079_1397985_+|carboxymethylenebutenolidase
MTHRRFPMTDADPHFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAAAAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPTLLVVSEIFGVHEYIQDVCRRLARLGYQAVAPELFARYGDPTGYTDIGRLRAEVVDKAGDRQVLADLDAAAAWAAANGGNPSRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLAGQASELKPRSVLESIGDLKAPVLGAYGGKDAGIPLSDVDRMRLALAKGPQAARDSRIDVYPEAPHAFHADYRPSYRKAEAEQAWQRMLDWFGQHGLAA
>CP020649.1|AWP74149.1|1393648_1397083_+|hypothetical-protein
MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALTQDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQPEGAAPLLQVAELDVSASWMSLFWFAPVVDSLVVRQPRIALVREDVTRFNFSDIQQKVADMAAQAPPEPEPRPGLPRFSLNNMVLEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVARPFDTVPSSTLDVSFAGLELEKWADAWPLPLPVKLERALLDSNLQVLFEQPRDAAPRIKVVGELGLRQLDVRESSGDVLAQWGALAVRRIAFEPMQRSLYIGEVELWSPQIQTRRYADQRLNWLDIAQKLQKLGAGDAPARPAAAPAPTPAPATPAPAPAPAAEAAAAPQASAASAPPDAWHVAVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLWLTMDSTIDGSWLRAKGPLTLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQARVRLAQREGGTQVVAEGVALRLSDLSLRDESVKPAVPVSVKQFEARFDRLAPDAQPSPFTLKADGVQGEGALAMQGALTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLSARGDAEFAAAAGAAPMKAAWRGAVDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDAFAANLGDITLEDFYGRVLLNAEGRLNVMDLVAEPGQAGGSITQDTQTRARAAAPAKPGPMPDIAIGSVTLKGGKMTFTDRFVKPNYTAELSRIEGSVSAVSSRQPKPAKVNVAGRVYTSAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIKDRALQASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQFSVGGIIVRVLVNLVVKAVTSPFTLLASAFGGGEELSYIEFDPGSAALTPDAESRIETLAKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTAGRGKKPAPDGVEVAPAEREKYLEEVYDDTKIEGKPRNFIGMAKSIPAEQMEALLRGAAPVGADDLRKLADARAQAVYEKLQAAGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK
>CP020649.1|AWP74158.1|1405206_1406100_-|carboxyvinyl-carboxyphosphonate-phosphorylmutase
MSSAAKKFRDLLNSAEFIVSPGVYDGYSLRLVQAAGFKTACTSGAALSNALLGIADIGVMGLMENVNHCRMLARSVNIPLTADADTGYGNPVNVFHTVQMFEEAGVAGVNLEDQVSPKRCGHMPGKDVIPLEEMVKKIEAACLARRDDNFVIIARTDALAVEGIEGAARRAQAYAAAGADVIFPDAVRTAEDIGRIVEAAGVPVSVNMGFGVRQRPTTPLIPLPELKRLGVKRISLPRMLPAAAIHGMRSALEEMKQVIATGTPAHRPDLLVGIEDIMELMGYEAMRALEKKLTTLD
>CP020649.1|AWP74159.1|1406299_1408984_+|aconitate-hydratase
MLSRMTNRGYMNASFLHLGTPIHYADVAAAAARSGVELASLPYVIRILLENLLRHRGRGRPVQEAEIEAVAHWQAHISEQISLHVERVILPDSSGLPVLQDLAALRDAVQAGGGDPARVDTRVPVDLIVDHSLQVDAWSTADAVRRNLDAEFARNEQRYRFLKWAQQAFDGLRVFAPGTGIIHQVNLEKLATVVSTSEHGGQQWACPDFVIGGDSHTPMVNGLGVLGWGVGGIDAESALLGRAYTFPIPEVVGVELKGAFRSPVTTTDAALLVTQRLRAEGVTGCMVEFFGEALPGLSVADRATIANMAPEYGATCGFFPVDAQTLDYLRLTGRTAEHIELVRAYCQANGLWRADPAASAVRYARVVRIDLAQAEPCMSGPRRPQDRLPIGQLAEDFRQRLPRPAAEGGFGLDAAALARAPGSAGLRHGSIVVAALTSCTNTSNPSVMLTAALVARAARQRGIAPPAWVKRSLAPGSRTVTDYLAATGLLQDLEALGFGVIGYGCTTCGGKSGPLAPEVAQDIADNQWVVCTVLSGNRNFEGRIHKLARANYIGSPPLVVAYALAGRIDIDFSREPIATDADGQPVWLHELWPGEAQLDEIMARALSPQGFRRVWGLEPEGASQWRALAEVSGQHWQWDDSNYLVEPPFFKAPAQQFGQRLAGARVLGLYGDSLTTDHISPSGEIPAEAPAGRYLLGLGVAQRDFNTYVARRSNFEVMTRATFGNIRIRNLLVPGTEGGYTRHFPSGEQLSIYDASRRYMAAGTPTIVLAGEEYGTGSSRDWAAKGTALLGVRAVLAKSYERIHRANLVGMGVIPFQFERGQGWRELGLDGSETFEFFDVLDGIRQGRPVRVAASRDDGMRVEFSVMPQALTESERELLLQGGIPASVLADYLQ
>CP020649.1|AWP74160.1|1409008_1410382_+|dihydroorotase
MARPLDTLLANTLVFLEGQGLVPGSIGIADGRIAVIGSHGQDMPAARETIDCQGLWTLPGVIDPHVHFGFGSPETDFETESRNAALGGTTSVISFHRSADIRESFDAVRARAESQSCIDFGFHFGITSRLHVDTLDEISRRFGVSSYKLYMMYKGAAGLSKGFTDIDDGLLWGALNATRAIPGAVLGVHCENVEVIPWLRDPLRAAGRDDLAAWNEQSPDFLEAENVHRVCYFAGKTGTPVNIVHLSSREALREVRRHRHEGRAAPIYVETCPHYLFLDDRSPAGAYAKVNPPVRSAADIDAMWEGVCDGAITTIGSDHVPRKRATKDKDIWAASNGFPGTGMILPILLHEGYHRRQVPLETLMRVASGASARIYGMPGKGRIAVGNDADLVIVDPDLEKTVDPGELESHADYSPYEGMRLKGWPVRTLVRGRTVARDGRIADEARQTPGGRYLRRL
>CP020649.1|AWP74161.1|1410415_1411135_+|hydrolase
MSETKRIWDAFLTERDKEVYKAAGYGKRGGFGKRPALFIIDVQYNFCGDKPEDILEGLKQYRTHCGAEAWDAVKHIVPLLELAREKNLPVFYTESGRRNDLLDSGVQVGKNHRGGEKTVLANTHATRTVEELAPLPQDIRIVKQKPSCFFGTIFMSHLNFFDVDTLILVGCTTSGCLRATTVDAYSYNFKVIIPEEASFDRFQSSHAMSLFDLNCKYADVIPTAEVADYLKALPAREAG
>CP020649.1|AWP74162.1|1411145_1412147_+|GTP-binding-protein
MSTIPITLLTGFLGSGKTSLLRRLIHQPGFARCAVIINEFGEVGLDQALVADQSDDRDIQLLDSGCLCCLASSAIQDTLASLYYRRLRGEIPWFDRVLIETSGLAEPGPIINAVYGDGALARQFRFAGIVTTFDAGFGQVDVQAYAEAKTQLLMADTVVLTKLDLHPEARHLAAWLGELNPTARVYENSLPDDTLARLLLDPAADRPAPAAQGHPSAGAPQASALRHLLAYGIHSVTVDVPDAIGWPAWAAFVHEVQRTFADRLLRLKGVLAFEGQGRMAVHAVHHVFSAPEPAGAVPPALVGKLVFIVRDMEREEVLHAVRHLSGAPPADAA
>CP020649.1|AWP74163.1|1412284_1413304_+|LacI-family-transcriptional-regulator
MNFFNFGFQPGAAHTRRRVTATVLALAAWAALPVQQAAAQPQWPQRPVTLIVPFAPGGPTDITARVLGEALGKEWKQTVVIENRAGAGGTVGAGFAAKAAPDGYTLLLGVTGSHGIAGSLYPSLTYDPKGDFEAISKVVFYPNAIIANPDVPANNLQELIALAKKDPKYQVYGTDGNGTASHLTMELLRERGGFPMQAVQYKGASPLINDIVAGFVPVGITGFPSAEPQVKAGKLKLIALTTDKDYSGNGYPTIAGQGFPGFAAAPWSGIFAPKGTPAPVVQKIAADIKTVMASPAVVEKMQKLGLTPSAVTLADFEAELDRERASWATAVKISGAKVQ
>CP020649.1|AWP74164.1|1413322_1414708_+|fumarate-reductase-flavoprotein-subunit
MEFDMEFDVVIVGAGGCGLTAAVAIHDAYPQASIAVLDKAERACGNTVLSSGSIPAAGTRFQEAAGVHDTPRMFQEDLLTIAGEHEAMDLTRALTETSARLVEWLVDSAHVRLTLVETYKHIGHRVHRLHSPPSRRGADLVDDLLRECERRDIPVAWSNAVTGLIASEGRPRGVECATPDGAVTRVGARHVVLASNGYAANKSLLARFVPEVAAAPYGGGTGSEGEAILWGESLGAGLANMKAYQGHASLADPHGSLVTWTVIEKGGIIVDRSGRRFGDESIGYSAFAALELARTGPFWVIADTQVRDVTAAGQEEYAELVAHGGVLEGCLEELCARTGIDAAGLAATLQAARQCAADGGADAHGRAQWGLGPLGERLTATRIGPAIFHTQGGLRVDIDGRVLTDQAGVIDGLWAGGGAACGISGNRGSLGYMSGNGLLSALGLGLRIGQAIASRLGEEQA
>CP020649.1|AWP74165.1|1414704_1416081_+|hypothetical-protein
MTHDFKGSLMAGATPTRALADWCAALRDSRPSEAVLRESARHVLDTLAACAAGMRQPLVRAAIELERGINAQPGPVALFGGPERWTVLESAGLMAVACHALEMDDGNREGSIHPATTVVPAVLALGWQQEADYLAFLCAVVAGFEVAVSIAETLHPHASQRGFQTTPVAGVVGAAAACATLLGLDGAGIESAMGLAASASGGLFAYLAGGGNVKKFHPGHAAREGLRAALMARQGVAQGPRGVIEGRAGLLQAFGGITQWDGSRARERAAPAIARSYLKPYPCCRHIHPAIDAVMALKARAAWQAADVAAIEVETYGAAMPHARLPWDTLEVAQLSFPWVMALACVDGEVTLAGFSEAARTRPDINALAARVSVAQTQECDSLYPASGPARVTLRLRSGERLSEWVADPLGSADRPLADEALDRKAAEAFGLAFPAARVRALIGQLRRLEPWPLAELN
>CP020649.1|AWP74166.1|1416149_1417145_+|ABC-transporter-substrate-binding-protein
MSRKFLSALRNAGMCGAMMLGGLSAAPAAAADAWPGQPIRMVVPFAPGGAVDTLGRLVAKQLTDVLGQTVVVENKPGAGGNIGSNIVAKAAPDGYTLLFGAAGNITINPSLFDNMPYDVEKDLAPAALAGQSMNVLVVPAALPVDSVAELIDYARKHPDKLNYGSSGNGGTTHLAGELFNAMAGTRITHVPYQGSGPAMIDLLAGRVQLMFDNLPSAMPHIQRGDLKALGVTGAMRSPQLPDVPTIAETGLAGFEATTWFGVFAPAGTPQAVLERLNGAVNQVMQSAPVEQKLQSMAAYFQPTTRAQFQTLIHDDTAKWARVIKAAGIKLN
>CP020649.1|AWP74167.1|1418559_1419258_-|GntR-family-transcriptional-regulator
MKEKPITAIDKNGIDAPLTDVVYQRMLDGIYAGGLPPGGVINEVELAREFGVSRGPVREAVRRLQGIQIVTREPYMKARVVAMSAESALELFQMRMGLEGVACFLATQRMSDADIAQLQRDMDAHYQSWAARREGAPNGEERHFDLHERIVRASGNKRIIAALCEDLYHLLRIYRRHSGSALERKDDAYDEHWQIVRAIASRDARLAESLMRSHIERAANHVASQLREPAIQ

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Crispr_ID: CP020649_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_5

3197737-3197960

Orphan

Consensus_repeat	Method
CAGCTGCTGCGGGGGTGACTGCGGGA	CRT

4 spacers

The CRISPR arrays of CP020649_5

>merge|CP020649|5|3197737-3197960|CRT
CAGCTGCTGCGGGGGTGACTGCGGGATTTGCGGGGGTACCACCGCAGCTGCTGCGGGGGTGACTGCGGGATTTGCGGGGGTGCAGCTACTGTGGGGGCGCAGCTGCTGCGGGGGTGACTGCGGGATTTGCGGGGGTACCACCGCAGCTGCTGCGGGGGTGACTGCGGGATTTGCGGGGGTGCAGCTACTGTGGGGGCGCAGCTGCTGCGGGGGTTGTTGAAAGG

>CP020649|5|1|3197737-3197960|CRT
CAGCTGCTGCGGGGGTGACTGCGGGA	TTTGCGGGGGTACCACCG
CAGCTGCTGCGGGGGTGACTGCGGGA	TTTGCGGGGGTGCAGCTACTGTGGGGGCG
CAGCTGCTGCGGGGGTGACTGCGGGA	TTTGCGGGGGTACCACCG
CAGCTGCTGCGGGGGTGACTGCGGGA	TTTGCGGGGGTGCAGCTACTGTGGGGGCG
CAGCTGCTGCGGGGGTTGTTGAAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP75711.1\|3194950_3195157_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75718.1\|3199865_3200186_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75721.1\|3203672_3203915_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP77646.1\|3195153_3195972_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340813
CP020649.1\|AWP75706.1\|3190878_3192297_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372539
CP020649.1\|AWP77648.1\|3200665_3201277_+\|LexA-family-transcriptional-repressor	unknown	unknown	gnl\|CDD\|119397
CP020649.1\|AWP75717.1\|3199174_3199873_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75713.1\|3196564_3197320_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288299
CP020649.1\|AWP75707.1\|3192299_3193577_-\|terminase	unknown	unknown	gnl\|CDD\|367410
CP020649.1\|AWP75719.1\|3201342_3201555_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP77647.1\|3198652_3198820_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75715.1\|3198206_3198581_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75709.1\|3194240_3194501_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75716.1\|3198905_3199160_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75720.1\|3202864_3203506_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75710.1\|3194513_3194954_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP77649.1\|3202383_3202761_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371127
CP020649.1\|AWP75708.1\|3193563_3194049_-\|terminase	unknown	unknown	unknown
CP020649.1\|AWP75712.1\|3196091_3196568_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75714.1\|3197319_3197682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235537

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP77646.1\|3195153_3195972_-\|hypothetical-protein	gnl\|CDD\|340813	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC. Crossover junction endodeoxyribonuclease RuvC is also called Holliday junction resolvase RuvC. It is part of the RuvABC pathway in Escherichia coli and other Gram-negative bacteria that is involved in processing Holliday junctions, which are formed by the reciprocal exchange of strands between two DNA duplexes. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. RuvC is thought to bind either on the open, DNA exposed face of a single RuvA tetramer, or to replace one of the two tetramers. Binding is proposed to be mediated by an unstructured loop on RuvC, which becomes structured on binding RuvA. RuvC can be bound to the complex in either orientation, therefore resolving Holliday junctions in either a horizontal or vertical manner. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the Escherichia coli HJR. RuvC and its orthologs are homodimers and display structural similarity to RNase H and Hsp70.	6.49222e-06
CP020649.1\|AWP75706.1\|3190878_3192297_-\|hypothetical-protein	gnl\|CDD\|372539	pfam13264, DUF4055, Domain of unknown function (DUF4055). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 140 amino acids in length.	7.18035e-48
CP020649.1\|AWP77648.1\|3200665_3201277_+\|LexA-family-transcriptional-repressor	gnl\|CDD\|119397	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell. This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the protein. In the presence of single-stranded DNA, the LexA, UmuD and MucA proteins interact with RecA, activating self cleavage, thus either derepressing transcription in the case of LexA or activating the lesion-bypass polymerase in the case of UmuD and MucA. The LexA proteins are serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. LexA sequence homologs are found in almost all of the bacterial genomes sequenced to date, covering a large number of phyla, suggesting both, an ancient origin and a widespread distribution of lexA and the SOS response.	3.71438e-11
CP020649.1\|AWP75713.1\|3196564_3197320_-\|hypothetical-protein	gnl\|CDD\|288299	pfam11417, Inhibitor_G39P, Loader and inhibitor of phage G40P. G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C terminal is essential for helicase interaction.	2.90904e-05
CP020649.1\|AWP77649.1\|3202383_3202761_+\|hypothetical-protein	gnl\|CDD\|371127	pfam10546, P63C, P63C domain. This domain was identified by Iyer and colleagues.	2.60578e-18
CP020649.1\|AWP75707.1\|3192299_3193577_-\|terminase	gnl\|CDD\|367410	pfam03237, Terminase_6, Terminase-like family. This family represents a group of terminase proteins.	4.66842e-42
CP020649.1\|AWP75714.1\|3197319_3197682_-\|hypothetical-protein	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0.00481007

>CP020649.1|AWP75714.1|3197319_3197682_-|hypothetical-protein
MRKPKDSGFDAMKVDLPDWLPAESWERWVRHRVQLKKPITEETARQQIEDLGTFRGQGHQPDDVIRHCIGKSWQGLFPPKQGFGPRPAPAVSEADRRKQEFLRLAGHGGNDSRTIDMEQA
>CP020649.1|AWP75713.1|3196564_3197320_-|hypothetical-protein
MHSRDVSAFAELLAGVFDAYNRLPPQPATQLLWLRMLEPYEFPAVSAAFSQYVANEVKFPPTPAQILALLGHGTGDSRPTADEAWATALVSRDEAETVVWTLETAQAFAACRTVLDLGDEVGARMAFKGAYDRLVARARHDRQPVAWQASLGWDPDRRERALTAAGTAGLLPAPHVAALLPPPDPSGGLGDDAVAAENIARLRKLLAGALSPSEKRRRAAEQAGQAERDRLDVLKAETAAKVAQHQQGVRA
>CP020649.1|AWP75712.1|3196091_3196568_-|hypothetical-protein
MSSYAEASAAVGGNESGGYGVCAAYGCCLPGTMTASTQGGKDWHCRLHFGAPRSEFDDISARVQNRKALFLAAYWLVNRPKGDTVSRKVRDRIKALGRADLLEKVPSVRGVTAYHLGVHMLRVLGDECRQPQEHMGTPKRAGQGTTWLDQTQPEETDA
>CP020649.1|AWP77646.1|3195153_3195972_-|hypothetical-protein
MQVPQDALEGRRAEVLAIACGGYALPLEGGGVLPPPGSFACEGAPTSDPAKINIEPGDPWARPGAETPRAAAETRTTVGFDPGAGAGPAPALNVNILALDLGTKTGYALRRRDGRMVHGTEEFTPRASWAPGQKWLRFRSWLSATITEHSITQIAFEDVKRHGPGQVLAAHAYGGFRAMLEMVADQHRVALVPFGVGQIKKHWTGSGVAKKDDMLMQAKVRGFAAVDDNNADALAILHLAIAKEKREWAAPPAKSKTRRTRKAGAVAHERTA
>CP020649.1|AWP75711.1|3194950_3195157_-|hypothetical-protein
MTWARRSDRGDPAKVLERRQEPPPVRSCAGCAHIRLVKSEFDGRRILTCSHGMQVGQRCRLFEERRSE
>CP020649.1|AWP75710.1|3194513_3194954_-|hypothetical-protein
MTTSKMLLDRLPADFHARLENWGEVMRSRPHYAVSPTYEVCRRLAKRAGQGAWGGEEGVRELDEGDAGLIEAAWRNSVYRMLHQHRDILRAHYVTRSYWLATCRALGLRTREYDDVLVRAVGNFEDFVARYAVVVHNPAQDRPTTV
>CP020649.1|AWP75709.1|3194240_3194501_-|hypothetical-protein
MPMAGAARPSETKPRANGRGFFVGVFLQSERTHMPNQNENELKRYAVIDLDGRPALCEVRGKVIEAASWKEARKMIKADGELPEGI
>CP020649.1|AWP75708.1|3193563_3194049_-|terminase
MPAASLPEGPRTMARPSKYQPAFAEQAAKLCRLGATDKDLADFFAVTERTLNTWKKQHAEFLQALNAGKTLADAEVADRLYQRALGYTHAEDDIRVCDGVIVTTPTTKHYPPDTVACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNASIPDADA
>CP020649.1|AWP75707.1|3192299_3193577_-|terminase
MPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKINESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPEGFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHHTDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNASESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPNDAQGYFLVHRYPITPTGMSRIKLTGT
>CP020649.1|AWP75706.1|3190878_3192297_-|hypothetical-protein
MPVDSKHPLWLANQPRWERCRTALQGQDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTVTLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTARVRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEAIDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSIKVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEFFPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGGIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
>CP020649.1|AWP75715.1|3198206_3198581_-|hypothetical-protein
MQREQGVVLDFLRIRPSEPMLFIDKAEIARCVTYRQAVRLAWDMRQPRGMTMRTLAELCGMYPQHVSSYLHEDPLLPSSFAKPSPSAFSIELMGWSLRTLSDIRDSLVGWALSFAQRCGRDVRS
>CP020649.1|AWP77647.1|3198652_3198820_+|hypothetical-protein
MQTETEKLLNHAQQIARRAFDDPSEKTVMDLFDELRAERDRRAWEGSDAAGATVH
>CP020649.1|AWP75716.1|3198905_3199160_+|hypothetical-protein
MEEQELRHRLAVAEGNIAGLVAVIGALVRQLPEEQRLHLAARAEAMFEPLEAAMLGDADPYSDSSLAGLRNVRTMLSDLLSRSA
>CP020649.1|AWP75717.1|3199174_3199873_+|hypothetical-protein
MSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIGDSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAALLPGYLDRVKTDQQVNTNAGELLLRCVQEANHVLRCRPVSDGQDEIVSGVDGPSLNSNRPRHENPAQDVKHE
>CP020649.1|AWP75718.1|3199865_3200186_+|hypothetical-protein
MSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQVHGPNYSVAIAQTQAMLQNNLNSIAI
>CP020649.1|AWP77648.1|3200665_3201277_+|LexA-family-transcriptional-repressor
MRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILLRRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTNPDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
>CP020649.1|AWP75719.1|3201342_3201555_+|hypothetical-protein
MYMNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
>CP020649.1|AWP77649.1|3202383_3202761_+|hypothetical-protein
MAEELREWEKTFPDELWQEFGRLTNWSGPLHSRPRWWGKLVIELIYDTLDPDVAKYLKNNKPAPGIHWHRQLSEDFGARQLVSRCFEVVGMAKTCHSIRELRDRVAEHYGHNTVQLTLTLPRSQR
>CP020649.1|AWP75720.1|3202864_3203506_+|hypothetical-protein
MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVYVVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQWMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
>CP020649.1|AWP75721.1|3203672_3203915_+|hypothetical-protein
MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA

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Crispr_ID: CP020649_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_6

3309481-3309604

Orphan

Consensus_repeat	Method
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020649_6

>merge|CP020649|6|3309481-3309604|CRISPRCasFinder
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAACGCCCCCACGCTGCGCCCGCTGCGCGGGCTTGCTGCCCCCCAAGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA

>CP020649|6|5|3309481-3309604|CRISPRCasFinder
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	CGCCCCCACGCTGCGCCCGCTGCGCGGGCTTGCTGCCCCCCA
AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP75819.1\|3309649_3309781_-\|entericidin	unknown	unknown	gnl\|CDD\|227797
CP020649.1\|AWP75820.1\|3309807_3310503_-\|5-carboxymethyl-2-hydroxymuconate-isomerase	unknown	unknown	gnl\|CDD\|223257
CP020649.1\|AWP75824.1\|3314072_3314897_-\|uroporphyrinogen-III-methyltransferase	unknown	unknown	gnl\|CDD\|119440
CP020649.1\|AWP75821.1\|3310686_3311223_-\|inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|179262
CP020649.1\|AWP75826.1\|3315956_3316676_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163429
CP020649.1\|AWP75827.1\|3316834_3317530_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163429
CP020649.1\|AWP75828.1\|3317804_3318686_-\|succinyl-CoA-synthetase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
CP020649.1\|AWP75816.1\|3306442_3307099_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184854
CP020649.1\|AWP75814.1\|3304191_3305604_-\|secretion-protein	unknown	unknown	gnl\|CDD\|333965
CP020649.1\|AWP75812.1\|3300829_3301726_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224975
CP020649.1\|AWP75822.1\|3311251_3312847_-\|protoheme-IX-synthesis-protein	unknown	unknown	gnl\|CDD\|273126
CP020649.1\|AWP75823.1\|3312850_3314035_-\|heme-biosynthesis-operon-protein-HemX	unknown	unknown	gnl\|CDD\|235899
CP020649.1\|AWP75818.1\|3309028_3309292_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75811.1\|3299807_3300608_+\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP77656.1\|3307095_3307719_-\|hypothetical-protein	unknown	unknown	unknown
CP020649.1\|AWP75813.1\|3302578_3304195_-\|secretion-protein	unknown	unknown	gnl\|CDD\|227297
CP020649.1\|AWP75815.1\|3305600_3306446_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|274472
CP020649.1\|AWP77655.1\|3301736_3302582_-\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227300
CP020649.1\|AWP75825.1\|3314893_3315838_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
CP020649.1\|AWP75817.1\|3307715_3309032_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP75819.1\|3309649_3309781_-\|entericidin	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	8.70055e-07
CP020649.1\|AWP75827.1\|3316834_3317530_-\|hypothetical-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	1.80134e-70
CP020649.1\|AWP75824.1\|3314072_3314897_-\|uroporphyrinogen-III-methyltransferase	gnl\|CDD\|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	2.8885e-45
CP020649.1\|AWP75821.1\|3310686_3311223_-\|inorganic-pyrophosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	2.68623e-113
CP020649.1\|AWP75826.1\|3315956_3316676_-\|hypothetical-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	3.14656e-77
CP020649.1\|AWP75828.1\|3317804_3318686_-\|succinyl-CoA-synthetase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
CP020649.1\|AWP75816.1\|3306442_3307099_-\|hypothetical-protein	gnl\|CDD\|184854	PRK14852, PRK14852, hypothetical protein; Provisional.	0.00208036
CP020649.1\|AWP75814.1\|3304191_3305604_-\|secretion-protein	gnl\|CDD\|333965	pfam00263, Secretin, Bacterial type II and III secretion system protein.	4.23385e-53
CP020649.1\|AWP75823.1\|3312850_3314035_-\|heme-biosynthesis-operon-protein-HemX	gnl\|CDD\|235899	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed.	4.52015e-54
CP020649.1\|AWP75822.1\|3311251_3312847_-\|protoheme-IX-synthesis-protein	gnl\|CDD\|273126	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein. Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General].	2.08752e-71
CP020649.1\|AWP77655.1\|3301736_3302582_-\|pilus-assembly-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	3.18806e-34
CP020649.1\|AWP75813.1\|3302578_3304195_-\|secretion-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	1.81087e-139
CP020649.1\|AWP75815.1\|3305600_3306446_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|274472	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.	3.27424e-49
CP020649.1\|AWP75820.1\|3309807_3310503_-\|5-carboxymethyl-2-hydroxymuconate-isomerase	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	9.66779e-90
CP020649.1\|AWP75825.1\|3314893_3315838_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	8.72133e-165
CP020649.1\|AWP75812.1\|3300829_3301726_-\|hypothetical-protein	gnl\|CDD\|224975	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion].	9.08185e-19

>CP020649.1|AWP75818.1|3309028_3309292_-|hypothetical-protein
MSVKQRQLGQGMIEYIIVVALVAVAAIAVYQLFGQVVRSQTAAMARELAGEDGSAQARAAQSAAGRAASQTRARSLKSFTGNAQGAK
>CP020649.1|AWP75817.1|3307715_3309032_-|hypothetical-protein
MRPTRAAVTRQAGQALALGLALMALAGMAWLALYGLGQRAGARAQLLRATDAAAYSGAVVQARALNLLAYIHRAQVGHQVALAHLASLAAWARFAQTQAARRTAQNPPVALIGLLFGPRAARGYGAAHDALAGDLMQAYAAHDELAHRVLQQAADTLARDARATRDATMRAVLRAHYPQGDDGLTLEVLRDDWPGYLRRVTGTSARGLRGWAQRAAGYFDFLQPRDFTREGNWIVSPRCPTRRHELRRRGVTWLDRDGRWGASDTLSFHAVRSNRWIGCYFREYAMGWGLAADSGATRAGPHVLRAPEDFSQQDFWRWVHRHTSWNLLGGRHNPLALSYAASRRLSPGGRGLPAVYEPASSSEAAVGFEIRTQRREEGIVLSARAAGQSHFSLPPGTSVARGRPDVLFLPYWQARRAAADAALPMAARRTVRGPESRP
>CP020649.1|AWP77656.1|3307095_3307719_-|hypothetical-protein
MRGAAFSRRQRGQALAEALPLLAMLLLAWAAVAWLGTLRHQALRLGQHSRVAAFMAAAAAPSAPRTATLARQAGLAGRTAADGMPALLARDWLQVDTRLLHAQAAEPAAMPGGLLREGAIAAALRGVTVLAIGPGHASDARAGNDRLARSVAGWQLAHRAAAPAVAATRRRVRPVEAAWGLRDAGQDWLRTWADMASADGAVLRRQP
>CP020649.1|AWP75816.1|3306442_3307099_-|hypothetical-protein
MTPAHLAASASAWLHLPPGVVAAALAGQIQMFGVPAEVRVFHAPQGIDALLAHFATRHAELRDLTVLPGLAVLAGGAGDCTHTISLAPQSGGVEGVAARLCWPRGLPSRQPLADVLLPPHARLRLDVATRDGPVSVAQQVWHWRAAGPTETARWAVRREARLRASGWRLQGAAGPACRCGAPQTWLRAGPQGRERLSLQPALHANGCGMRLLHIGGAP
>CP020649.1|AWP75815.1|3305600_3306446_-|Flp-pilus-assembly-protein-CpaB
MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAARDLEAGTPLHDELVAVRDMPQAWLPAGALLPDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQLTMPLLAGSKVLALDPADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFAAPSAREAGDLPALLGMPRDAAPRAAVPVLYGDRLDAPAGALPGDTEAVMP
>CP020649.1|AWP75814.1|3304191_3305604_-|secretion-protein
MSMRSRLPLHARGWLPWMAVLLAGGSMLWTPGGRAASPAQPAVLRMEVGETQVLAAAGVTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIATLAQRYPEVLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGPLAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRATDKEGNGTTLFKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTPTIVSPSDSFLQRRALLGQMQLDQAFPEAPRLGTGAAADQSADWSRPGGAGSQWRQPPSADAQEGAP
>CP020649.1|AWP75813.1|3302578_3304195_-|secretion-protein
MNVLELALHFEDGARRRMRLAAPVTIGRGAQCALRIANWRVGRVHARLSCLDGAVVLEDLGTLGGTSVNGLRVATHAPVLPDDEIVIGPCLIRVSACCTGSAPSPAPAALPAGGASRGEDLDAALQQSLVLLPHRRRLHAALLEALDLRRRDVSAMSDRMLRAQAEQRLVELVGQDGELPEGIDRAQLCRAVLDEAVGLGPLEPLLADGGISEIMVNRHDEIYVERAGRLQRHAAAFSSEQAVRWVVERIVAPLGRRIDDSSPMVDARLPDGSRVNAVIAPIAIRGVSLTIRKFPRQRPGMADLLAAGSLSEPMARFLLQCVHARKNLLVSGGTGSGKTTLLNILSNAIPEGERIVTIEDAAELRLDHAHLVALEARPANAEGRGRVDIRDLVRNALRMRPDRIVVGECRGAEAFDMLTAMNTGHEGSLTTLHANTPRDALARLEAMTLMAGLDLPLPVVREHIAASIDIIVQQARMADGRRIVTAIVEIAGMESGRIQTQELFRYDARHGFIAGDAPVLADGAWARGPFTGQPEPAP
>CP020649.1|AWP77655.1|3301736_3302582_-|pilus-assembly-protein
MIWLAMGMAMAAAAWLAWRVLAWSGPAARRYRAVYTQQAGAHLSEVFLFVDPAQLWAAALAMAAAGAAAAWVFSGSAWLAAVAAVALLRLPHLLLGAARRRRLRQLERQLPGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFDAALARLARRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGALPPVLMGVLGRLQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV
>CP020649.1|AWP75812.1|3300829_3301726_-|hypothetical-protein
MWLWLAASVAGVAAGWACLALLRGWCGAGWAAACGPEPAPGPPAWRLPRIWRCCRPWLGPLLPWCDRLLSWRMRAVIERAIVRAGCDGLVRPCEVAALSLWMAWLGGVVAVTAASLADGWRAWLPLAPAACAAGAWPALWLRRCAARRRQRIARELPFILDLMTLCAEAGLGMHGALQQAASHGPPGPLRELLVQALCDMRAGMPRRQAMQALAARADSPPVRAWVGALAHADAQGMSLGPMLRGLATRYRAERHQRAERLAMEAPVKMLLPLIACIFPCTFIVLAFPIGYALLQGGL
>CP020649.1|AWP75811.1|3299807_3300608_+|hypothetical-protein
MQAVSLPAISGWQWVRDGLRLFMKQPLAMFTWAMAISLLLLFATYTPLVGPLLFVALMPSITLMTLSACKHVEASRVMLPSMWLQPLKKPGVFKKLFLMGMLYVGLCLAAGLLAFLPFSSSLAEGVRMASANNLAPIMTAMRAPLLVFTALYVIIAAVFWHAPVLVGWHGLRLLQALFFSGIACWRNKWPFLVYGVVWILVFLFIDLCIGLLIGMGVPDTLAGTLQVPVTIIAGGVLYCSFYPAYTSVFGVNDAHAGLDNSDSAHA
>CP020649.1|AWP75819.1|3309649_3309781_-|entericidin
MRSKIVLTAFVVFGFVLQGCNTVAGMGKDMSDAGSAITHAAEK
>CP020649.1|AWP75820.1|3309807_3310503_-|5-carboxymethyl-2-hydroxymuconate-isomerase
MDYVFPPSPPAAVPVAGGNARFPVRRVYCVGRNYAEHAKEMGFTGREDPFFFCKPADAILSVADGATGEMPYPPKTANLHYEMELVVVLGKGGRDLTVEQADECVWGYALGLDMTRRDLQGEAKKQGRPWEVGKAFDLSAPLGPIHPRSAVGTLDKGAIWLDVNGERKQSSDISQMIWNIPESVAYLSGLFELQPGDIIFTGTPEGVGAVVKGDVIVGGVEGLGELRVRIA
>CP020649.1|AWP75821.1|3310686_3311223_-|inorganic-pyrophosphatase
MSLDRVAPGKKLPDDFNVIIEIPMNADPVKYEVDKESGAIFVDRFMLTAMHYPCNYGYIPQTLSEDGDPADVLVLTPFPIQIGAVVRCRAIGVLEMDDESGGDAKLLAVPIEKLYPPYRNIKSYEDLPAEDVSRIQHFFEHYKDLEKGKWVKVKGWKGVDAAHEEIVRSAERYAKGQA
>CP020649.1|AWP75822.1|3311251_3312847_-|protoheme-IX-synthesis-protein
MRTWFWTLLLAVVAVALAVVLRAHAGNVLLLVWPWRIELSLTLTVLLLVAAFVTLYIGLRLLAWLVAIPDRLRAWRGRRAQERDHELLERGWIGLLEGRFAQAEKDLSKLFDQTKVRSRRVLAALSGARAAHNLGEYERRDRMLESAREQAGEDAGLQEATATVSADMLLDQGRAQQALDLLEPLQDGGARHLHTMRLLLRAETALQHHERVFLLARGLLRRNAIGKAEAEQLIDSAGAARLRAGMAVDQWRPIWKDLKSDERLLPNIALAGAAAFEDAGEANEAARILEAAVAVKFNPALVAAYARCDAAQVPHRLAKAETWLQQRPADTDLLTALGLLCLNGQLWGQAERYLQRSVSRRNDPQAHALLGSLYDRLDRPADAARHWRQATAARVALPVLAADIALPAADTKADPAWLDAEREYVPNMSEYTAPVIADAPPEVEPGAVDYVLDPDARAAGEHEPASAVAPEPVSVPPRTAIDIEDYFDSAPIPAAAIEAPVSSYRAGGDDEQPAKPGGAGSSAGPASGDKA
>CP020649.1|AWP75823.1|3312850_3314035_-|heme-biosynthesis-operon-protein-HemX
MTDNTSATPPGTVPGTPGTAAADEAVASQSRKGKGVNSTLVTALIIVILLAVGLGWAAWLQRKQFVSAGQEVAARLNTLGAELTQSRNDMREALALAQAQSGKVAELEGKVREAQSQYSALQQALQNLNDGASDEMLANDIERLITIASQQLRLAGNVSNAIVALETAQARLARADRPRFASLQQSINGDLDRLRAVGVVDIAAQSARIDRLVALVGRAPLLVPDAAAPGVTAVPQANEAVPASVDPGADLPADAAWWQRWQAEIASWPGRAGSALAHELGDLIRVQRVDQPTALLLSPEQAGQLRSTLRQRLLTAQLSMLMRQPAVWKSELDAVAATLAQYFDGKAPDTVAALALARELGQVEIAVRVPDVADSLNGIAALRAAGFNADGQQD
>CP020649.1|AWP75824.1|3314072_3314897_-|uroporphyrinogen-III-methyltransferase
MTGRSGPRGGLPMSQIAILTRPQGRNGALAQRLHEAGWQTLCLPALRIEPLPPENGAVPLPRDYDLVVFVSGNAARLYLEQLGERGQLPWPAGAVAATVGPASARALLDSGQFGADTTVLHPAETAPTHDSEALWALLRARPALPRRALLVRGTQGRDWLADRLAAAGVEVSRHAVYRRRPAPWAQEGRQRLRDWARAGERPTWLLTSGEGIDALVQGLREEQLLDWWLQGRFVVTHPVLAERLRALAGGGADAPMVKNCMPADEAIFATFVAA
>CP020649.1|AWP75825.1|3314893_3315838_-|hydroxymethylbilane-synthase
MAAVERLTIATRASRLALWQAEHVRDLLRARYPACSVELLTLTTRGDQILDRTLSKVGGKGLFVKELETALLDGRADLAVHSLKDVPVDLHAPFELSCVLERADPRDAFVSNDYGSLADLPPGAAVGTSSLRRESQIRARYPHLVVKPLRGNLDTRLGKLDNGDYAAIVLAAAGLERLGLAARIRALLEPADSLPAAGQGALGIEILQGRADVRAMLAPLGDAATLACVTAERAVSRMLGGSCQVPLAAYARIDGDELALRALVAAPDGRRIVRAERRGPRDQAQAIGESAARDLLADGADAILAELLPTSPAP
>CP020649.1|AWP75826.1|3315956_3316676_-|hypothetical-protein
MLEFFQTLSWAAVFQIILIDILLGGDNAVVIALACRNLAPKQRMQGILWGTAGAIILRVVLIAFALTLLNIPFLKVVGGLLLVWIGVKLLVPEDEGHDSIKGGTSIVAAVKTIIIADFVMSLDNVIAIAGAAQNAHADHQIGLVVFGLVVSVPIIIWGSTLVLKLIDRFPMVVTFGAALLGWIAGGMLITDVFVVRQFGEQPSAVKIGVEIAGALLVVLLGRWLASRKTASKESVNESA
>CP020649.1|AWP75827.1|3316834_3317530_-|hypothetical-protein
MELSSAAFWIALLQIIWVNILLSGDNAVVIALAARSLPPDQQKKAIVVGSAAAIVMRIVLTLVAAKLLLLPWLKLIGAALLVYIGVSLLLPEGEDDGAEKGHGSLFVAIRTIMIADLVMSLDNVVAVAAAAMGDTTLLVLGLAISIPLVIFGSALLLKVIERFPIIVWVGAALLGFIAGELLVGDPALEESVSRIDTMLGVTQHDFALMVGAIGAILVLALGKIFQARQRA
>CP020649.1|AWP75828.1|3317804_3318686_-|succinyl-CoA-synthetase-subunit-alpha
MSILINKDTKVITQGITGKTGQFHTRMCREYANGKAAFVAGVNPKKAGEDFEGVPIYANVKDAKADTGATVSVIYVPPAGAAAAIWEAVEAELDLVICITEGIPVRDMLEVKNRMQAMNSKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGIVSRSGTLTYEAVAQVTELGLGQSSAVGIGGDPINGLKHVDVLKLFNDDPDTDAVIMIGEIGGPDEVNAAQWAKDNMKKPVVGFIAGVTAPAGKRMGHAGALISGGADTADAKLEVMEACGIRTTRNPSEMGKLLKSVL

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Crispr_ID: CP020649_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_7

4126057-4126166

Orphan

Consensus_repeat	Method
GCGCAGCGAGCGCAGCGTGGGGGCATTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020649_7

>merge|CP020649|7|4126057-4126166|CRISPRCasFinder
GCGCAGCGAGCGCAGCGTGGGGGCATTTTCCACCGCCGGGCCGCCCCAAGGCAAAAGCCCCCCTGGGGGGCAGCAAGCTGGCGCAGCGAGCGCAGCGTGGGGGCTTTTCT

>CP020649|7|6|4126057-4126166|CRISPRCasFinder
GCGCAGCGAGCGCAGCGTGGGGGCATTTTC	CACCGCCGGGCCGCCCCAAGGCAAAAGCCCCCCTGGGGGGCAGCAAGCTG
GCGCAGCGAGCGCAGCGTGGGGGCTTTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP76521.1\|4130272_4131796_-\|peptidase	unknown	unknown	gnl\|CDD\|227122
CP020649.1\|AWP76515.1\|4124450_4125884_-\|ATP-dependent-RNA-helicase	unknown	unknown	gnl\|CDD\|223587
CP020649.1\|AWP76522.1\|4131871_4132711_+\|UTP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|224131
CP020649.1\|AWP76512.1\|4122327_4123140_-\|competence/damage-inducible-protein-A	unknown	unknown	gnl\|CDD\|223986
CP020649.1\|AWP76524.1\|4133695_4134790_-\|porin	unknown	unknown	gnl\|CDD\|238208
CP020649.1\|AWP76506.1\|4112718_4113453_+\|arginyltransferase	unknown	unknown	gnl\|CDD\|234939
CP020649.1\|AWP77684.1\|4126502_4127171_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224215
CP020649.1\|AWP76509.1\|4115654_4116632_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270294
CP020649.1\|AWP76507.1\|4113493_4114543_+\|dihydroorotate-dehydrogenase-(quinone)	unknown	unknown	gnl\|CDD\|235388
CP020649.1\|AWP76520.1\|4129075_4130176_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223506
CP020649.1\|AWP76518.1\|4128401_4128614_+\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|226826
CP020649.1\|AWP76508.1\|4114690_4115269_-\|Phasin-(PHA-granule-associated-protein)	unknown	unknown	gnl\|CDD\|130900
CP020649.1\|AWP76517.1\|4127434_4128355_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|235841
CP020649.1\|AWP76511.1\|4121320_4122169_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP020649.1\|AWP76510.1\|4116725_4121120_-\|dermonecrotic-toxin	unknown	unknown	gnl\|CDD\|283449
CP020649.1\|AWP76519.1\|4128636_4129059_+\|DUF4440-domain-containing-protein	unknown	unknown	gnl\|CDD\|379209
CP020649.1\|AWP76516.1\|4126170_4126500_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226827
CP020649.1\|AWP76514.1\|4124055_4124439_+\|thiol-reductase-thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP020649.1\|AWP76513.1\|4123193_4123994_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377798
CP020649.1\|AWP76523.1\|4132732_4133614_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378238

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP76521.1\|4130272_4131796_-\|peptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	6.77969e-93
CP020649.1\|AWP76515.1\|4124450_4125884_-\|ATP-dependent-RNA-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	8.74039e-162
CP020649.1\|AWP76522.1\|4131871_4132711_+\|UTP--glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	2.75704e-156
CP020649.1\|AWP76512.1\|4122327_4123140_-\|competence/damage-inducible-protein-A	gnl\|CDD\|223986	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only].	2.67138e-63
CP020649.1\|AWP76524.1\|4133695_4134790_-\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	8.91426e-53
CP020649.1\|AWP76506.1\|4112718_4113453_+\|arginyltransferase	gnl\|CDD\|234939	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional.	6.93678e-140
CP020649.1\|AWP77684.1\|4126502_4127171_-\|hypothetical-protein	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	2.16802e-27
CP020649.1\|AWP76509.1\|4115654_4116632_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270294	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.54496e-161
CP020649.1\|AWP76507.1\|4113493_4114543_+\|dihydroorotate-dehydrogenase-(quinone)	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
CP020649.1\|AWP76520.1\|4129075_4130176_+\|alpha/beta-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	1.70568e-90
CP020649.1\|AWP76518.1\|4128401_4128614_+\|zinc-finger-domain-containing-protein	gnl\|CDD\|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	5.98518e-12
CP020649.1\|AWP76508.1\|4114690_4115269_-\|Phasin-(PHA-granule-associated-protein)	gnl\|CDD\|130900	TIGR01841, hypothetical_protein, phasin family protein. This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.	3.19978e-10
CP020649.1\|AWP76517.1\|4127434_4128355_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	0
CP020649.1\|AWP76511.1\|4121320_4122169_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.34506e-72
CP020649.1\|AWP76510.1\|4116725_4121120_-\|dermonecrotic-toxin	gnl\|CDD\|283449	pfam05785, CNF1, Rho-activating domain of cytotoxic necrotizing factor. This family consists of several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) causes necrosis of rabbit skin and re-organisation of the actin cytoskeleton in cultured cells. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibers and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin which is composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain.	3.28325e-144
CP020649.1\|AWP76519.1\|4128636_4129059_+\|DUF4440-domain-containing-protein	gnl\|CDD\|379209	pfam13474, SnoaL_3, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.07341e-14
CP020649.1\|AWP76516.1\|4126170_4126500_-\|hypothetical-protein	gnl\|CDD\|226827	COG4392, COG4392, Predicted membrane protein [Function unknown].	7.8037e-15
CP020649.1\|AWP76514.1\|4124055_4124439_+\|thiol-reductase-thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.97539e-15
CP020649.1\|AWP76513.1\|4123193_4123994_-\|hypothetical-protein	gnl\|CDD\|377798	pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family contains a number of eukaryotic etoposide-induced 2.4 (EI24) proteins approximately 350 residues long as well as bacterial CysZ proteins (formerly known as DUF540). In cells treated with the cytotoxic drug etoposide, EI24 is induced by p53. It has been suggested to play an important role in negative cell growth control.	1.38538e-07
CP020649.1\|AWP76523.1\|4132732_4133614_-\|hypothetical-protein	gnl\|CDD\|378238	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG). Members of this family are the CtaG protein required for assembly of active cytochrome c oxidase of the caa3 type, as found in Bacillus subtilis.	4.8617e-46

>CP020649.1|AWP76515.1|4124450_4125884_-|ATP-dependent-RNA-helicase
MTESTSSDAPVTDAPTRTFADFGLHPLLLKSIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLMPLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQKNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQIAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPADLVARSHGRDRDAPRERGADRHRGERRTSGAAAPRQPVDELFYKPYEPANGQPASPETPKQEGRSNAPKRQLAVLLGGSRKG
>CP020649.1|AWP76514.1|4124055_4124439_+|thiol-reductase-thioredoxin
MPLHVPGSDIPTLRAALARSDAWLVACFCAAWCDTCQQYRPKLLELARARPGHTFAWIDIEDHPDLLGEEDVENFPTLLVQAHGKVLFYGPMLPHIGHLERLLDSLDPQGRPVATGLPDVARLLAAA
>CP020649.1|AWP76513.1|4123193_4123994_-|hypothetical-protein
MTVPRPESIIPPAGNAATGAAGIARAFKRALVSQCHPNMLFAVLLPFLIALLGAILLLWLFWTPLNEWLRFEASQWQAINQVDDWMVAAGLFSLKIYLVPVIAAAILLPISGILGLAIAAVFVMPLVLRHVGGREYAGLARQGRNATAVSVWNALWVSLAFGAGWLLTLPFWLIPPMAVILSVFWWAFAFTRMLRLDAIVEHASPAERAILLKRHNSGFWLIGLVCSLLNLLPPAWIILPVFSGLVYVHYGLDALQRLRQERTIDV
>CP020649.1|AWP76512.1|4122327_4123140_-|competence/damage-inducible-protein-A
MAAESARRIGLIIVGDEILSGRRQDKHFSKVVELLGARGLKLSWAELLPDDRATLAAVLRRSFASGDIVFSCGGIGGTPDDHTRQAAAEALDLPLALHPEAEQAIALRAAEMAAKGQGTADMGTPENQQRLQMGMFPRGCEIVPNPYNRIPGFFVRDHTFVPGFPVMAWPMLEWTLDTRYRALHHQVRHAEHSFLVFDMPESRITPAMVEIEQRWPGVRAFSLPSVGETGGPSHIDLGVKGEPEAAAQALAFLRAEVVRLGGKLAPPAQN
>CP020649.1|AWP76511.1|4121320_4122169_-|IclR-family-transcriptional-regulator
MSRIPNATARGPGSHSDDGAGQHPIAIQVIDRAMRLLDALAAQPEPVTLKELSATTGLHASTAHRILNDLVVGRYVERVDNGLYQLGMRLLELGSLVKGRLNVREAAIGAMRSLHKQTGQTINLSVQQGDEIVYIDRAWSERSGMQVVRAIGGRAPLHLTSTGKLFLSTYDTRLVRAYALRTGLAGHTRNSLTELDRLERELALVRRHGYARDNEELELGVRCIAAGIYDDTGKLVAGLSISAPAERLQDEWIRLLVDAAASISEALGYEPGVNGIHAPAAA
>CP020649.1|AWP76510.1|4116725_4121120_-|dermonecrotic-toxin
MDKDESALRQLVDMALVGYDGVVEELLALPSEESGDLAGGRAKREKAEFALFGEAPNGDEPIGQDARTWFYYPKYRPVAVSNLKKMQVAIRARLEPESLILQWLIALDVYLGVLIAALSRTAISDLVFEYVKARYEIYYLLNRVPHPLAAAYLKRRRQRPVDRSGRLGSVFEHPLWFAYDELAGTVDLDADIYEQALAESIERRMDGEPDDGSLDTTEHDVWRLCRDGINRGEQAIFQASGPYGVVADAGYMRTVADLAYADALADCLHAQLRIRAQGSVDSPGDEMPRKLDAWEIAKFHLAATQQARVDLLEAAFALDYAALRDVRVYGDYRNALALRFIKREALRLLGARRGNASTMPAVAAGEYDEIVASGAANDAAYVSMAAALIAGVLCDLESAQRTLPVVLARFRPLGVLARFRRLEQETAGMLLGDQEPEPRGFISFTDFRDSDAFASYAEYAAQFNDYIDQYSILEAQRLARILALGSRMTVDQWCLPLQKVRHYKVLTSQPGLIARGIENHNRGIEYCLGRPPLTDLPGLFTMFQLHDSSWLLVSNINGELWSDVLANAEVMQNPTLAALAEPQGRFRTGRRTGGWFLGGPATEGPSLRDNYLLKLRRSNPGLDVKKCWYFGYRQEYRLPAGALGVPLFAVSVALRHSLDDLAAHAKSALYKPSEWQKFAFWIVPFYREIFFSTQDRSYRVDVGSIVFDSISLLASVFSIGGKLGSFTRTQYGNLRNFVVRQRIAGLSGQRLWRSVLKELPALIGASGLRLSRSLLVDLYEIFEPVPIRRLVAGFVSATTVGGRNQAFLRQAFSAASSSAGRTGGQLASEWRMAGVDATGLVESTSGGRFEGIYTRGLGPLSERTEHFIVESGNAYRVIWDAYTHGWRVVNGRLPPRLTYTVPVRLNGQGHWETHLDVPGRGGAPEIFGRIRTRNLVALAAEQAAPMRRLLNQARRVALRHIDTCRSRLASPRAESDMDAAIRIFFGEPDAGLRQRIGRRLQEVRAYIGDLSPVNDVLYRAGYDLDDVATLFNAVDRNTSLGRQARMELYLDAIVDLHARLGYENARFVDLMAFHLLSLGHAATASEVVEAVSPRLLGNVFDISNVAQLERGIGNPASTGLFVMLGAYSESSPAIFQSFVNDIFPAWRQASGGGPLVWNFGPAAISPTRLDYANTDIGLLNHGDISPLRARPPLGGRRDIDLPPGLDISFVRYDRPVRMSAPRALDASVFRPVDGPVHGYIQSWTGAEIEYAYGAPAAARKVMLTDNVRIISIENGDEGAIGVRVRLDTVPVATPLILTGGSLSGCTTMVGVKEGYLAFYHTGKSTELGDWATAREGVQALYQAHLAMGYAPISIPAPMRNDDLVSIAATYDRAVIAYLGKDVPGGGSTRITRHDAGAGSVVSFDYNAAVQASAVPRLGQVYVLISNDGQGARAVLLAEDLAWAGSGSALDVLNERLVTLFPAPV
>CP020649.1|AWP76509.1|4115654_4116632_+|ABC-transporter-substrate-binding-protein
MPPISRKLSALFAAVALTGAGTALAEYPERPVNMVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKGGAGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLGAEVLTNEANPEALQAKVKQQVPQWAELFKKAGVEKQ
>CP020649.1|AWP76508.1|4114690_4115269_-|Phasin-(PHA-granule-associated-protein)
MSAIPQQVLARQKATVNSLVAAQSAMFAGFEKLVDLNLKVVRATLDEVAQQSQQAAELKDPQDVASFTSGLVQPGAEKALAYGKHVYDIVAGVQAELAQLAEAQIAEGQQQLTEAVEQFSKNAPTGSESAVALIKSSLATANSAYDSLTKAAKQAAEVAESNLNAAANASFKAASDAAEVATKAAGRNRRAA
>CP020649.1|AWP76507.1|4113493_4114543_+|dihydroorotate-dehydrogenase-(quinone)
MSILFHAYPLARPALFAMDAETAHEVTLAQLQRAYDCGLTRKLLHAQPEAPATLMGLSLRNPVGLAAGLDKNGAHIDALGNLGFGFVEVGTVTPRAQPGNPKPRMFRLPRANALINRLGFNNQGLDAFIANVQRSQWRSQGGILGLNIGKNADTPIERAAEDYLIGLAGVYPHADYVTVNISSPNTKNLRALQGGDELSALLGQLQERRLALADQHQRHVPLAVKIAPDLSDDQIDAIAEILPRHGIDGVIATNTTLARDAVQGLPHAEEAGGVSGAPVHELSLRVIERLRSRLGDAVAIIGVGGILSGRQASEKMAAGAQAVQLYTGLIYRGPALVGECVRALAQGSR
>CP020649.1|AWP76506.1|4112718_4113453_+|arginyltransferase
MPDMSQLKELPFSTLQFYATAPYPCSYLPGRQARSQVAAPGHLINAGTYSQLVEQGFRRSGLFTYRPHCDNCHACVPVRVDAARFEPNRTQRRAWRSHQALRAFVAELAWSPEHYDLYTRYQQGRHPGGGMDEDSRTQYAQFLLTTRVNTRLVEFRTPQGQLAMISIIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQIEQCRTLDLPWLYLGYWIADSRKMAYKANFRPLQMHVDGAWRETPP
>CP020649.1|AWP76516.1|4126170_4126500_-|hypothetical-protein
MSDRDLYVYGAILLLTLCSVLTRAGFMLFGDYIPLPDGVRRALRYAPAAALTAIVVPDLLPWKAGLGPAFDYKLVAGVLAIMAFLRTRSAVLVIVVGMVALWGLRWLAG
>CP020649.1|AWP77684.1|4126502_4127171_-|hypothetical-protein
MRAITPALIATGTWGMVTGVAMVKSGLTESMALAMTLLMYAGSAQLTSLPLIATGAPLWLIFAAGFVVNLRFLIFGAALHPYFRHMSWPRRLGLGYFTTDMGFVLFMPRFGDAAERGTREQLWFFLGTVAPGWMVWQVTSIVGIYLGSLVPEAWSLDFAAVLALLAITVPLANSKPMLVSMLAAGMVAWVGQLLPLRLGLAAAVVAGIVAGIWAERFFKGRT
>CP020649.1|AWP76517.1|4127434_4128355_+|branched-chain-amino-acid-aminotransferase
MSMSDRDGFIWYDGKLVPWREATTHVLTHSLHYGLSVFEGVRAYETAAGTAIFRLQDHTNRLFNSAHIYQIPLPYDRDTLNEAQREVVRANGLASCYLRPLAFYGSEKMGVSPKGAQVHVAIAAWPWGAYLGETALAQGIRVKVSSFARQHVNVTMPRAKVATTYANSIIANAEALQDGYDEALLLDTEGFVAEGAGENIFIVKDGVLCEPEIASALTGITRSTIHALAADLGLRVVTKRLTRDDVYIADEAFFTGTAAEVTPIREVDNRQIGAGRRGPVTEKLQQAFFDLVNGRNPKYQHWLTPV
>CP020649.1|AWP76518.1|4128401_4128614_+|zinc-finger-domain-containing-protein
MTAAAQAAVPAHDAIEVGAEDLPVYCPGPKAPLWSMHPRVFLDVTHTGQASCPYCGAAYRLKPGTVVHGH
>CP020649.1|AWP76519.1|4128636_4129059_+|DUF4440-domain-containing-protein
MFATPDEAEHAFYEALEHADLDRLMQVWSDDEEIACIHPGGLRIVGHTAVHESWQQVLANGPLHLRPLRPLVMQSMMCAVHVLVEQVTVMTREGAQFANCYATNVYHKGPAGWRMVLHHASQAPAEAGVLDLHDFPDRLH
>CP020649.1|AWP76520.1|4129075_4130176_+|alpha/beta-hydrolase
MAASRIDLTPCPVPPWLPDRHSQTVYAAVLAQYHRIAFVRERVDTPDTDFVDFDWTGPGLFPHKTAEGAAPAGPAPQGNGRIAAARWITATDWASLPQTADTPALILFHGLEGGSTSRYAQSIAHYFRARGWIVVIAHFRGCSGVPNRLARAYYSGDSAEVGFMLDTVRARIPHARWHAVGVSLGGNALLKYLGEHHDEASWLAAAAGVSVPLDLVAGGKALCTGFIARRIYTAYFLKTMRRKVLEKAKRFPGAIDVIRIAHARDLRDFDDAYTARMHGYRNALDYWTRASSKPWLAHIKTPTLVLNARNDPFLPESALPIPAECSDSVLLHQPAEGGHAGFPTGPFPAHLNWLPQRLGRFFEMGS
>CP020649.1|AWP76521.1|4130272_4131796_-|peptidase
MNRWNLTFSPSLGRRALAAALSLALGLPVAPAVGQPSGLPSMGAASASELSPMLERQLGDAIMAQGRRDPTYINDPELRQYLTTMGRKLASFAPGAAPHVEMFGVRDPEINAFAMPGGYIGVNTGLIVSSASESELAAVLAHEIGHVAQRHIARGMTQQNQNSMVMLASLAGALLAALAGGGGNLAMGVAAFGQAAAINRQLGFSRDAEREADRTGLQMLAKAGYDPDGMAQMFSRLMNASRLNEGMGGGAWASTHPLSIDRMSDVQNRIRGLPGSRHVDSDDFWFIRAKMRVAQGRDALSLRTAQQQLQDESRALSGVRQAAAFYGLALYAFQRNDLAQARAFLEQAGAGGRSSPQMARLAIDVAVAAKDNDQALALALAQAAVKRWPDRKALGIAYAQALQAAGRHADAQAYLRERARQWGGDEPSLYQLLAQSEERTGHPVDARRNMARYYDLTGAYASAESQLQQARGLSNDFYEQSQIDVSIREIKQKLADERQLLERFKSG
>CP020649.1|AWP76522.1|4131871_4132711_+|UTP--glucose-1-phosphate-uridylyltransferase
MQVVRKAVFPVAGMGTRFLPATKAMPKEMLPVVDKPLIQYAVEEAVAAGITDLIFVTGRNKRAIEDHFDAAPELETDLEAKGKHELLALVRDILPAHVNCLYIRQSAPLGLGHAVLTAAPAVGNEPFAVLLADDLIDADTPVLKQLIDVAVARQGSVLGVQEVPREDTRKYGIVASQPVDARTERVTHIVEKPAPEQAPTTLAVVGRYVLEAAIFDHLRATTVGAGNEIQLTDGIAALLRERDVYAHRYDGKRYDCGSKAGMFQATVALGRKYHGLIPE
>CP020649.1|AWP76523.1|4132732_4133614_-|hypothetical-protein
MTRMDWLEWLIPWEFSPTLVAAFVVAIVLFVRGQRVHHVTAARQWLFWSGMVLLYLSMHTRLDYYAERMFFIHRAQHLVLHHLGPLLVMAAFPGSAMRAGLPMAWRVRLRDFLRTGTGRALAAVLTHKVFVPTLFVFLVLVWLLPSVQFYSMLDWRLYRLMNWSVVISGFMYWNLILDRRPSPPAAMTPGGRVLSPALTMAPQMVAGAVIAFTERDLYPLFELCGRAIAMSAQTDQTIGGLTMWIPAALVEVVGLLVALGTLMRLSGKGRLRPQDRAARARQRAAGSPTSPAA
>CP020649.1|AWP76524.1|4133695_4134790_-|porin
MRRLLVVAAMAAGSSSVFWSVAPARAANQLELYGVVDVGLATTRVSGLGTRQQVLGGGQTDNLWGLRGTEELDGGWRASFGLESGFDAANGTRNDDARLFDYGTWVGLGHAGVGELSLGRQQSIGLQYGGQLEIASWRDMGMGALFKASDNYRVNNLVNYLSPEFSGWQWGVGYAFDVESGDTGRFDRSPAFSTGLKYEDGPLLAAFTWDKLNLHDTSATGGRSPQALQAGFTYDFEALKMALAWSRQRNGFVGLNGGGQIGLGPEPFAHGGAINAWLLGLEVPVHGNGAWLVQGSMARPDWHWANGQQASKAYVVTLGYRQDLSARTSLYAYGGYMKGYDPEDPFASDVGRATRFGVGMTQRF

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Crispr_ID: CP020649_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_8

4209876-4209960

Orphan

Consensus_repeat	Method
CTGTCCCCGCGGGGACAGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020649_8

>merge|CP020649|8|4209876-4209960|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACCCTGTCATACGCCATGAACGCTTGACGGCCAAGACGGTATCTGTCCCCGCGGGGACAGGCACC

>CP020649|8|7|4209876-4209960|CRISPRCasFinder
CTGTCCCCGCGGGGACAGGCACC	CTGTCATACGCCATGAACGCTTGACGGCCAAGACGGTAT
CTGTCCCCGCGGGGACAGGCACC

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP76580.1\|4199699_4200599_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236819
CP020649.1\|AWP76586.1\|4207040_4208927_+\|DNA-mismatch-repair-protein-MutL	unknown	unknown	gnl\|CDD\|234630
CP020649.1\|AWP76594.1\|4215515_4216910_-\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
CP020649.1\|AWP76588.1\|4209970_4211020_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP020649.1\|AWP76579.1\|4197838_4199593_-\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
CP020649.1\|AWP76582.1\|4201782_4202763_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223751
CP020649.1\|AWP76587.1\|4208923_4209865_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
CP020649.1\|AWP76596.1\|4219179_4220223_+\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
CP020649.1\|AWP76583.1\|4202778_4204170_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
CP020649.1\|AWP76593.1\|4214532_4215489_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
CP020649.1\|AWP76589.1\|4211272_4211974_+\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
CP020649.1\|AWP76592.1\|4214021_4214513_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|172582
CP020649.1\|AWP76597.1\|4220266_4221010_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP020649.1\|AWP76595.1\|4216906_4219009_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129868
CP020649.1\|AWP76581.1\|4200663_4201647_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270295
CP020649.1\|AWP76590.1\|4211970_4212669_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319796
CP020649.1\|AWP76584.1\|4204321_4204858_+\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
CP020649.1\|AWP76591.1\|4212669_4214025_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|130997
CP020649.1\|AWP77687.1\|4204929_4206174_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
CP020649.1\|AWP76585.1\|4206315_4206954_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182775

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP76580.1\|4199699_4200599_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|236819	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional.	5.82773e-38
CP020649.1\|AWP76586.1\|4207040_4208927_+\|DNA-mismatch-repair-protein-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
CP020649.1\|AWP76594.1\|4215515_4216910_-\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	1.99057e-107
CP020649.1\|AWP76588.1\|4209970_4211020_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP020649.1\|AWP76579.1\|4197838_4199593_-\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
CP020649.1\|AWP76582.1\|4201782_4202763_+\|hypothetical-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.39722e-43
CP020649.1\|AWP76587.1\|4208923_4209865_+\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.65914e-155
CP020649.1\|AWP76596.1\|4219179_4220223_+\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.0782e-86
CP020649.1\|AWP76583.1\|4202778_4204170_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP020649.1\|AWP76593.1\|4214532_4215489_-\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	5.15422e-118
CP020649.1\|AWP76589.1\|4211272_4211974_+\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	5.71769e-101
CP020649.1\|AWP76592.1\|4214021_4214513_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.13553e-82
CP020649.1\|AWP76597.1\|4220266_4221010_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.68551e-44
CP020649.1\|AWP76595.1\|4216906_4219009_-\|hypothetical-protein	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.22582e-96
CP020649.1\|AWP76581.1\|4200663_4201647_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
CP020649.1\|AWP76590.1\|4211970_4212669_+\|hypothetical-protein	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.41254e-63
CP020649.1\|AWP76584.1\|4204321_4204858_+\|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.25733e-54
CP020649.1\|AWP76591.1\|4212669_4214025_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	2.24295e-147
CP020649.1\|AWP77687.1\|4204929_4206174_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	6.26496e-86
CP020649.1\|AWP76585.1\|4206315_4206954_-\|hypothetical-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	9.21907e-70

>CP020649.1|AWP76587.1|4208923_4209865_+|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQAYSAAEFRADALRLVAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPVTAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>CP020649.1|AWP76586.1|4207040_4208927_+|DNA-mismatch-repair-protein-MutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELEAVASMGFRGEALASIASVADLTIISRTRGADHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVQAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGAPDGAAPDAAYAGQPAAAPGLAEPRAPYPASYPPPGQGSYQGSPARPHTQVPFRLHAEPAGIPASDWQSLYRPLPADAAPAAMALRDAPATALPAADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>CP020649.1|AWP76585.1|4206315_4206954_-|hypothetical-protein
MLDFLNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>CP020649.1|AWP77687.1|4204929_4206174_+|N-acetylmuramoyl-L-alanine-amidase
MRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIRGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPTPPIKPLPAPSRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKALIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGTAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>CP020649.1|AWP76584.1|4204321_4204858_+|bifunctional-alanine-racemase/tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSAPPTTLRLHLPDEAATEDLARQLAPLVDGRRGGPPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDANLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>CP020649.1|AWP76583.1|4202778_4204170_-|class-II-fumarate-hydratase
MKTRTEKDTFGPIEVPDQHLWGAQTQRSLHFFAISTERMPVPLVAAMARLKRAAAKVNAELGELDPRIADAIMRAADEVVAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINFGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGEMTNARR
>CP020649.1|AWP76582.1|4201782_4202763_+|hypothetical-protein
MSENSSLRRDAEAPPPSIFPPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAVQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLGLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPG
>CP020649.1|AWP76581.1|4200663_4201647_-|ABC-transporter-substrate-binding-protein
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>CP020649.1|AWP76580.1|4199699_4200599_+|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRERPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANDHPGLTRTSLGHTELVHLSRRPGAGATRLQDLGDETLIVLDARDASGSLLQMALDAQGLAPPVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACAALQAQPAPQAE
>CP020649.1|AWP76579.1|4197838_4199593_-|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDINPEIAGARSERAQAHARRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFPVSPRLHASIAGDKALAAQPAAARYFYGPDGQAWPVGHRLKNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLSEADLAAYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD
>CP020649.1|AWP76588.1|4209970_4211020_-|phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLADVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADTEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>CP020649.1|AWP76589.1|4211272_4211974_+|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPTLNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALAAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>CP020649.1|AWP76590.1|4211970_4212669_+|hypothetical-protein
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPDEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTAQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVSQWLAGMGLALGDFAESFFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>CP020649.1|AWP76591.1|4212669_4214025_+|polynucleotide-adenylyltransferase-PcnB
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGTIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETARLPREAGDAPAQKRRRPRRRPSNRPREPQ
>CP020649.1|AWP76592.1|4214021_4214513_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MSGAPAPVLAYVGLGANLGDAAATLRGVLDELAAAPGVLACTASRLYRTAPVDAQGPDFVNAVAALSTTLAPLALLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGDDAIDHPRLSVPHPRMHERAFVLAPLCELAPGLRLAQGDCAALLAALAGQAIEPLR
>CP020649.1|AWP76593.1|4214532_4215489_-|hypothetical-protein
MKKQIWGTLLAAAMAVGSCAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSVVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNKFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRSGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQTLNEASARALNTPAMRQMLERDGIDLVADSPEHAAAFLKDEMAKWGKVVKDGNLQP
>CP020649.1|AWP76594.1|4215515_4216910_-|MmgE/PrpD-family-protein
MTMNQAVSPLAGTPAVSAELARFAATSRWEDVPQAVRHEGRRSLLNYFAVALAAARDPVLDTATRTYARFASDARASLVGRARRLDMLNAAALNAMAANVYDFDDTHHPTIIHPTAPVAPALFALAETRPLSGAQLLHAFVLGVEATCRIGNAMSPGHYARGWHITSTCGVFGAALGAARCLGLPGDAMVAALGCAAVQAGGLVEMLGTAAKSISVGNAARNGLLSALLAAEGLDGPPQPLEGPRGYLRVAADAPDIAAVSAGLGERWEVLNNTYKPYPCGVVLNPVIDACLALAADPRIAGGRWAAIERIELTGHPLLKQRTDRPGVATGRQSQVSAQHAVAVALARGRAGLPEFSDEAVADAGLRALGERLGFHDDDSMSVDAVKVRIAFQDGTLLEREVQAARGSRARPLQDGEIEEKLRELCRHGGARVDAGRLIEAVWTLDEAGDAAAVMRLAAEQPAA
>CP020649.1|AWP76595.1|4216906_4219009_-|hypothetical-protein
MSSIEMPAPVMPIEPAELAGASPYPLAADRDFSLIRWMAGISRASGALATLALLLMALSMCYEIFSRYLFNSPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGMVVFCMSILVDLYRLSPPAQAWRRWLTPALLALLAAALVALGANTVPMAGGGRFDWGMALIVAVLLVCAWAWSGARTLAHVVLVVGGCAVLYGLARGQSLGWIAVLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAISAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>CP020649.1|AWP76596.1|4219179_4220223_+|C4-dicarboxylate-ABC-transporter-substrate-binding-protein
MPQHFPLPRGFQAALAAAALCTASWSGGAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILVNPDSWQKLPPEVQKQVQGAMDALQQEAFGNYDTFVGNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>CP020649.1|AWP76597.1|4220266_4221010_+|GntR-family-transcriptional-regulator
MPFPFCNPNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLLPEQARGIYQVREELEGLACQLFAEHASDAQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAAPAE

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Crispr_ID: CP020649_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_9

4419047-4419140

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020649_9

>merge|CP020649|9|4419047-4419140|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>CP020649|9|8|4419047-4419140|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP76761.1\|4413105_4413891_-\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181723
CP020649.1\|AWP76772.1\|4424859_4425963_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212118
CP020649.1\|AWP76768.1\|4420229_4421630_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
CP020649.1\|AWP76770.1\|4423478_4424402_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
CP020649.1\|AWP76769.1\|4422729_4423389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224199
CP020649.1\|AWP76767.1\|4419785_4420130_-\|TIGR01244-family-protein	unknown	unknown	gnl\|CDD\|225984
CP020649.1\|AWP76762.1\|4413883_4415116_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
CP020649.1\|AWP77696.1\|4405819_4407454_+\|ATP-dependent-acyl-CoA-ligase	unknown	unknown	gnl\|CDD\|341257
CP020649.1\|AWP76759.1\|4411079_4412057_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
CP020649.1\|AWP76766.1\|4419226_4419697_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
CP020649.1\|AWP76763.1\|4415311_4416067_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223930
CP020649.1\|AWP76773.1\|4426150_4427770_-\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224720
CP020649.1\|AWP76758.1\|4409781_4410954_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
CP020649.1\|AWP76764.1\|4416177_4416696_+\|methyltransferase	unknown	unknown	gnl\|CDD\|224204
CP020649.1\|AWP76757.1\|4407502_4408696_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180775
CP020649.1\|AWP76760.1\|4412067_4413039_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
CP020649.1\|AWP77697.1\|4421818_4422733_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP020649.1\|AWP76765.1\|4416692_4418816_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
CP020649.1\|AWP77698.1\|4425882_4426191_+\|sugar-translocase	unknown	unknown	gnl\|CDD\|377229
CP020649.1\|AWP76771.1\|4424407_4424863_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226610

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP76761.1\|4413105_4413891_-\|enoyl-CoA-hydratase	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	2.06175e-156
CP020649.1\|AWP76772.1\|4424859_4425963_-\|hypothetical-protein	gnl\|CDD\|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	1.3947e-92
CP020649.1\|AWP76768.1\|4420229_4421630_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.52472e-110
CP020649.1\|AWP76770.1\|4423478_4424402_+\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.97616e-21
CP020649.1\|AWP76769.1\|4422729_4423389_+\|hypothetical-protein	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.25651e-32
CP020649.1\|AWP76767.1\|4419785_4420130_-\|TIGR01244-family-protein	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
CP020649.1\|AWP76762.1\|4413883_4415116_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
CP020649.1\|AWP77696.1\|4405819_4407454_+\|ATP-dependent-acyl-CoA-ligase	gnl\|CDD\|341257	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins.	1.26816e-168
CP020649.1\|AWP76759.1\|4411079_4412057_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
CP020649.1\|AWP76766.1\|4419226_4419697_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
CP020649.1\|AWP76763.1\|4415311_4416067_-\|hypothetical-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
CP020649.1\|AWP76773.1\|4426150_4427770_-\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	1.9702e-50
CP020649.1\|AWP76758.1\|4409781_4410954_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	6.96831e-84
CP020649.1\|AWP76764.1\|4416177_4416696_+\|methyltransferase	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	9.09964e-45
CP020649.1\|AWP76757.1\|4407502_4408696_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180775	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase.	6.15168e-175
CP020649.1\|AWP76760.1\|4412067_4413039_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
CP020649.1\|AWP77697.1\|4421818_4422733_+\|EamA-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	8.05606e-10
CP020649.1\|AWP76765.1\|4416692_4418816_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	0
CP020649.1\|AWP77698.1\|4425882_4426191_+\|sugar-translocase	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.61408e-10
CP020649.1\|AWP76771.1\|4424407_4424863_-\|hypothetical-protein	gnl\|CDD\|226610	COG4125, COG4125, Predicted membrane protein [Function unknown].	2.35069e-54

>CP020649.1|AWP76765.1|4416692_4418816_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKTTTTERILFYTGITHKLGEVHEGAATMDWMEQEQERGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQPQSETVWRQANKYGVPRIAFVNKMDRVGADFFRVQRQIVERLKGDAVPIQIPVGAEDHFEGVVDLVKMKAIIWDDASQGVRFEYRDIPPELQAQAEQWREKMIEKAAEANEALLEKYLSGQPLSEDEIKSGLRARTVANEIVPMLCGSAFKNKGVQAMLDAVIDYLPSPADVPAIIGHDERDREIERHPADDEPFSALAFKIMTDPFVGQLVFFRVYSGVVKSGDSVLNPLKSKKERLGRILQMHANERREISEVYAGDIAAAVGIKEITTGDTLTDPAHVIILERMTFPEPVISQAVEPRTKADQEKMGIALNRLAQEDPSFRVRTDEESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRETIRSTVTDVEGKFVKQSGGRGQYGHVVLKLEPQEQGKGYEFVDAIKGGVVPREFIPAVDRGVRETLNTGVLAGYPVVDVKVTLVFGSYHDVDSNENAFRMAASMAFKEGMRRAKPVLLEPMMHVEVETPEDFTGNVMGDLSSRRGMVQGMEDIAGGGGKLVRAEVPLAEMFGYSTSLRSLTQGRATYSMEFKHYAEAPRQVAEQIIAARGSGAAARG
>CP020649.1|AWP76764.1|4416177_4416696_+|methyltransferase
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGAIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAVLRRLEKRIAARDDKRVVAQPPP
>CP020649.1|AWP76763.1|4415311_4416067_-|hypothetical-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>CP020649.1|AWP76762.1|4413883_4415116_-|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>CP020649.1|AWP76761.1|4413105_4413891_-|enoyl-CoA-hydratase
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSRQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>CP020649.1|AWP76760.1|4412067_4413039_-|ABC-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>CP020649.1|AWP76759.1|4411079_4412057_+|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>CP020649.1|AWP76758.1|4409781_4410954_-|acyl-CoA-dehydrogenase
MGAILGTIIEELQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAAGAPVSAHWIADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRRDTAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>CP020649.1|AWP76757.1|4407502_4408696_-|acetyl-CoA-acetyltransferase
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLPTDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRLMGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVFNADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEINEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAVERA
>CP020649.1|AWP77696.1|4405819_4407454_+|ATP-dependent-acyl-CoA-ligase
MADFTLDDIKQRSMAEITAMQARRHGEKAFLHFLPRDERISYAGFDRRSSAVGRGLKAHGVQAGAHVGLILDNCPEMILAVFALAKIGAVWVPINTAAKGKLLVYYLDFADITTLIVHEKYLAPIAACLHELPRLQRIVVVDDGSGHAAQQAPRAIRYAALEQDGREDQAFDADPWQLGALLFTSGTTGPSKAVMWPQAGVNVWAAQNAMARWVAPDDVEYVCLPLFHANALLNSTWTAFVAGATVALTDRYSTTRFWSEIRQCGATRFNSLGAIVNFLWTQPPTPQDRDHKVRLCSMAPVPPYVHEFEARFGVKVFTGYGLSDYCLAASTRLDDPAEKAFSCGKPRPGIDLRIVDDNDIELPAGQTGEIALRSHETWSTASGYYKMPEATLQARRNFLFHTGDRGYLDADGYLYFVDRKKDSIRRRGENISSQEVEAVLTSHPEVVNAAVYPVRGDLPEDEVGASVLLRPGSALSYQDLTRYCVENMSYYMVPRFLEFVDALPLTESGKIEKFKLKQRAEQRPSPLWDREAAGIVVSRASARA
>CP020649.1|AWP76766.1|4419226_4419697_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>CP020649.1|AWP76767.1|4419785_4420130_-|TIGR01244-family-protein
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>CP020649.1|AWP76768.1|4420229_4421630_-|GntR-family-transcriptional-regulator
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRRGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPTGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYRRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>CP020649.1|AWP77697.1|4421818_4422733_+|EamA-family-transporter
MSPPSAQASAPSASPHAPSWEGYGYGLIGVLVFALTLPMTRLAVGELSPLLVGLGRALLAAVPAAALLWLTRSRRPDRAEWSGIVLAAVGIVVGWPVASTLAMASVPAAHGAVFNGLLPLSTAVFAAWRSGERPSPAFWSFAVLGAVLVAGYALRQGHGALQPGDLWLLLAVVLGGMGYAEGARASRTLGGWRTICWALVVSVPALLPAVLWLAHDAAWPSLPVAGAFAYLAFGSMFLGFFAWYRGLAIGGIARVGQIQLLQPFLTVVAAALLFNEQVEPITYVFAVAVVLVIAGGRRAMVRKA
>CP020649.1|AWP76769.1|4422729_4423389_+|hypothetical-protein
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLERLPWLYSTLKYGGAAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIATLVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>CP020649.1|AWP76770.1|4423478_4424402_+|alpha/beta-hydrolase
MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDAPTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLGGAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTPMLLLHGTADRVVPHTMSDELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>CP020649.1|AWP76771.1|4424407_4424863_-|hypothetical-protein
MSSSSKQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTMPVRVAHAVGFELGLVLIIVPLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>CP020649.1|AWP76772.1|4424859_4425963_-|hypothetical-protein
MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGNEPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGDDFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLDPDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIGALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHPELGTWLARNGLRIVRLSQVRGRQASQESGKVRNVPHSGSFRRLASRL
>CP020649.1|AWP77698.1|4425882_4426191_+|sugar-translocase
MEWAGLPPLGANVVGWLLAFVVSFTGHFRLTFRHLAASWTIAARRFFLVSALGFAINELSYAWLLHATSLPYDVLLALVLIGLAFLTFVASRLWAFRHRHAP
>CP020649.1|AWP76773.1|4426150_4427770_-|phospholipid-carrier-dependent-glycosyltransferase
MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRPLALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHKPPLYYWLAELSFRLFGVNEWAARLPSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMITLCVLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRGLRALLWPPAILAFAVVAVPWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYLPVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVWLAVIVAFFSMPQSKLVGYIMPVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSRELALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDAVQFEPALGERLLVSADTFQQRLCQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRSLWLVLVDEAFKGRVCDGTPTGG

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Crispr_ID: CP020649_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020649_10

4691451-4691534

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020649_10

>merge|CP020649|10|4691451-4691534|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGGGGTGCCTGTCCCCGCGGGGACAG

>CP020649|10|9|4691451-4691534|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP020649.1\|AWP77002.1\|4686547_4687498_+\|lipoprotein	unknown	unknown	gnl\|CDD\|223868
CP020649.1\|AWP77707.1\|4684754_4685507_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
CP020649.1\|AWP77012.1\|4694336_4694912_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
CP020649.1\|AWP77005.1\|4689068_4689602_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|173148
CP020649.1\|AWP77004.1\|4688063_4689002_-\|rRNA-(cytidine-2'-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
CP020649.1\|AWP77008.1\|4690940_4691432_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239264
CP020649.1\|AWP77013.1\|4695124_4696618_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|279307
CP020649.1\|AWP77003.1\|4687494_4688067_-\|cysteine-methyltransferase	unknown	unknown	gnl\|CDD\|223427
CP020649.1\|AWP77000.1\|4683457_4684744_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823
CP020649.1\|AWP77007.1\|4690200_4690944_+\|phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|182907
CP020649.1\|AWP77018.1\|4701358_4702243_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
CP020649.1\|AWP77009.1\|4691588_4692377_-\|methionine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
CP020649.1\|AWP77001.1\|4685678_4686551_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|235450
CP020649.1\|AWP77015.1\|4697709_4698846_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
CP020649.1\|AWP77006.1\|4689601_4690204_+\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|237567
CP020649.1\|AWP77011.1\|4693540_4694287_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|319791
CP020649.1\|AWP77017.1\|4700808_4701372_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
CP020649.1\|AWP77010.1\|4692638_4693541_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
CP020649.1\|AWP77016.1\|4698842_4700795_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
CP020649.1\|AWP77014.1\|4696628_4697684_+\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|376860

Protein	Function_ID	Function_description	E-value
CP020649.1\|AWP77002.1\|4686547_4687498_+\|lipoprotein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	3.79567e-55
CP020649.1\|AWP77707.1\|4684754_4685507_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.39738e-12
CP020649.1\|AWP77012.1\|4694336_4694912_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.59741e-107
CP020649.1\|AWP77005.1\|4689068_4689602_+\|YraN-family-protein	gnl\|CDD\|173148	PRK14685, PRK14685, hypothetical protein; Provisional.	1.91773e-89
CP020649.1\|AWP77004.1\|4688063_4689002_-\|rRNA-(cytidine-2'-O-)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	9.54075e-109
CP020649.1\|AWP77008.1\|4690940_4691432_+\|thioredoxin	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.58284e-41
CP020649.1\|AWP77013.1\|4695124_4696618_+\|hypothetical-protein	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.68833e-115
CP020649.1\|AWP77003.1\|4687494_4688067_-\|cysteine-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	5.36172e-54
CP020649.1\|AWP77000.1\|4683457_4684744_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	4.18466e-10
CP020649.1\|AWP77007.1\|4690200_4690944_+\|phospholipid-binding-protein	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.20064e-42
CP020649.1\|AWP77018.1\|4701358_4702243_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	9.0892e-90
CP020649.1\|AWP77009.1\|4691588_4692377_-\|methionine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.17353e-136
CP020649.1\|AWP77001.1\|4685678_4686551_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.18739e-149
CP020649.1\|AWP77015.1\|4697709_4698846_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	3.23854e-160
CP020649.1\|AWP77006.1\|4689601_4690204_+\|phosphoheptose-isomerase	gnl\|CDD\|237567	PRK13936, PRK13936, phosphoheptose isomerase; Provisional.	1.25469e-125
CP020649.1\|AWP77011.1\|4693540_4694287_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|319791	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p. This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.14842e-46
CP020649.1\|AWP77017.1\|4700808_4701372_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	7.62373e-19
CP020649.1\|AWP77010.1\|4692638_4693541_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.71108e-158
CP020649.1\|AWP77016.1\|4698842_4700795_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP020649.1\|AWP77014.1\|4696628_4697684_+\|lactate-dehydrogenase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	1.11307e-125

>CP020649.1|AWP77008.1|4690940_4691432_+|thioredoxin
MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQDLRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTRKLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKALAG
>CP020649.1|AWP77007.1|4690200_4690944_+|phospholipid-binding-protein
MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVTDRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATAIAQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVVYLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAAQKAPIESGAAPAGSGSNGVEAIPIK
>CP020649.1|AWP77006.1|4689601_4690204_+|phosphoheptose-isomerase
MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALANNGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIFERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHDVHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE
>CP020649.1|AWP77005.1|4689068_4689602_+|YraN-family-protein
MTDTATRLAFARAAQAQRRLHRRPPASPRASPGARDGGSPTQRRGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALLLPVLLRRHWPGAPPPVRFDVVAFEAGRPHWLRGAFWLAEHAPAQGRRGQDAQGWRVR
>CP020649.1|AWP77004.1|4688063_4689002_-|rRNA-(cytidine-2'-O-)-methyltransferase
MNQDVLSPAPGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLGLRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLMAAHRHNEASAAQAICERLAQGQRVALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFAFAGFPPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRFEEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESLSVRDAARVAAKVTGLARDVLYARALARKEQP
>CP020649.1|AWP77003.1|4687494_4688067_-|cysteine-methyltransferase
MNPPSEQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPTAAGWTPDAAHPALRQAAAELEQWFAGRRRAFEVDMQPEGTPFQRQVWQALLELPFGATISYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAHEGHRYLSRAARARRVSTTQMELPFGAA
>CP020649.1|AWP77002.1|4686547_4687498_+|lipoprotein
MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSNLDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNGESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLGIIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQLASNAPTPPRPATGAGSGIYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNLYRVRIGPYATREAALGAVQPVADRTGILPSLSATP
>CP020649.1|AWP77001.1|4685678_4686551_+|RNase-adaptor-protein-RapZ
MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANARDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADRPPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRHRTQLPDDPA
>CP020649.1|AWP77707.1|4684754_4685507_-|cytochrome-c
MLAFKSDLRIAMRAWRAACGVLAAAAGMLAMSQAVAQGEAALRPDTMAARVAACTACHGEQGRAGPDGYYPRLAGKPQDYLYHQLLNFRDARRQYPPMAHLLNGLPDAYLREMAAYFAGQDVPYPPPARVEASAALVERGRLLVREGDPARAIPSCASCHGASLAGVAPAIPGLLGLPRDYLVAQIGSWQNGLRRAAEPDCMAQVSLKLTPEDIGAVSAWLAGQPVGHPYTPQPAGSLTLPLECGSQAGH
>CP020649.1|AWP77000.1|4683457_4684744_-|cytochrome-c
MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSADELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSADDFWQALHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHELASPYDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAAEALGGGMIDGLGWYAPPLTGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGSTQYLSGDDALAIGTYLKSLPAAAPPPARRGAPSATVMELGGKLYGQHCAQCHQADGKGSFPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLVSYVRNSWGNQAGAVTPLDVKRTRESGAGR
>CP020649.1|AWP77009.1|4691588_4692377_-|methionine-ABC-transporter-substrate-binding-protein
MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKPALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTNLVSVGLVHVEPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATPIDIAENPKKLKFRELEAAMLPRSLDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLVAARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF
>CP020649.1|AWP77010.1|4692638_4693541_+|acetylglutamate-kinase
MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGFVGDITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLSAQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTMISSH
>CP020649.1|AWP77011.1|4693540_4694287_+|pyrimidine-5'-nucleotidase
MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIFPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNFEVAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMRMHGQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGHRQRPGYVDLRVNSVSDLLLRRRPLRG
>CP020649.1|AWP77012.1|4694336_4694912_+|nucleoid-occlusion-factor-SlmA
MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALYRHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYGMGQARKTVAMLLAFAERNRGITRVLTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTHLVLGRWLRYAQSGWRVAPTTHLEEHLRLALG
>CP020649.1|AWP77013.1|4695124_4696618_+|hypothetical-protein
MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAGHRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPNVKNPDVLYGTSAAISMALTGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLVVPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLIFVVLRLLPPESDAIAGGKEAVEASLRELGPMTSAQKRLMLVSIMLLLFWSTEGKLHKFDTTSTTYFGLVLLMLPRFGVMTWKDVQTRIPWGTVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILIHLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVALGTETFTAKQFAKVGIVLTIVGYLLMLLMSVTYWRWLGWM
>CP020649.1|AWP77014.1|4696628_4697684_+|lactate-dehydrogenase
MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHGLSILPNYRRVLAEGFVKADGRARLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQYGQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLCFAGPLPGGRPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADPPGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNADWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLAKLAQDLGAADALPRA
>CP020649.1|AWP77015.1|4697709_4698846_-|rod-shape-determining-protein-RodA
MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRFAEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNLGVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGAITMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA
>CP020649.1|AWP77016.1|4698842_4700795_-|penicillin-binding-protein-2
MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRYEGFSERADRNRIAVVPIPPRRGEILDRNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLARVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVREYPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGLEEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALELGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYNSFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIKRAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFAPVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAALELGATDGPMQERRQ
>CP020649.1|AWP77017.1|4700808_4701372_-|rod-shape-determining-protein-MreD
MERTKVSVPARRKLGTPSNVEPERLARPAHGVFVWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHRRLQRFDLWSQAMHMLPVFFLAQLVTQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV
>CP020649.1|AWP77018.1|4701358_4702243_-|rod-shape-determining-protein-MreC
MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAAENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVVGQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANTPGVIEVRYLAANADIKVGDTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQAESNRQEADVDGAD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP020649_3	3.1\|1404613\|28\|CP020649\|CRISPRCasFinder	1404613-1404640	28	CP020649.1	1419373-1419400	0	1.0

1. spacer 3.1|1404613|28|CP020649|CRISPRCasFinder matches to position: 1419373-1419400, mismatch: 0, identity: 1.0

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
tggatcggtgcctgtccctgcggggaca	Protospacer
****************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP020649_3	3.1\|1404613\|28\|CP020649\|CRISPRCasFinder	1404613-1404640	28	NC_015741	Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence	2938-2965	5	0.821
CP020649_3	3.1\|1404613\|28\|CP020649\|CRISPRCasFinder	1404613-1404640	28	NZ_CP022304	Thalassococcus sp. S3 plasmid pS3A, complete sequence	3172-3199	6	0.786
CP020649_3	3.1\|1404613\|28\|CP020649\|CRISPRCasFinder	1404613-1404640	28	NZ_CP035419	Leisingera sp. NJS204 plasmid unnamed2, complete sequence	72757-72784	7	0.75
CP020649_3	3.1\|1404613\|28\|CP020649\|CRISPRCasFinder	1404613-1404640	28	NZ_CP038239	Leisingera sp. NJS201 plasmid unnamed5, complete sequence	18489-18516	7	0.75
CP020649_3	3.1\|1404613\|28\|CP020649\|CRISPRCasFinder	1404613-1404640	28	NZ_CP048789	Roseobacter ponti strain DSM 106830 plasmid p1, complete sequence	2829-2856	7	0.75

1. spacer 3.1|1404613|28|CP020649|CRISPRCasFinder matches to NC_015741 (Roseobacter litoralis Och 149 plasmid pRLO149_94, complete sequence) position: , mismatch: 5, identity: 0.821

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
actttcggggcctgtccctgcggggaca	Protospacer
    **** *******************

2. spacer 3.1|1404613|28|CP020649|CRISPRCasFinder matches to NZ_CP022304 (Thalassococcus sp. S3 plasmid pS3A, complete sequence) position: , mismatch: 6, identity: 0.786

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
acgcgcggcgcctgtccccgcggggaca	Protospacer
  *  ***.*********.*********

3. spacer 3.1|1404613|28|CP020649|CRISPRCasFinder matches to NZ_CP035419 (Leisingera sp. NJS204 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.75

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
gcccgcggtgactgtccccgcggggaca	Protospacer
     ***** *******.*********

4. spacer 3.1|1404613|28|CP020649|CRISPRCasFinder matches to NZ_CP038239 (Leisingera sp. NJS201 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.75

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
gcccgcggtgactgtccccgcggggaca	Protospacer
     ***** *******.*********

5. spacer 3.1|1404613|28|CP020649|CRISPRCasFinder matches to NZ_CP048789 (Roseobacter ponti strain DSM 106830 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.75

tggatcggtgcctgtccctgcggggaca	CRISPR spacer
acatccggggcctgtccccgcggggaca	Protospacer
  . .*** *********.*********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1729774 : 1779786

Bordetella_phage(93.88%)

tail,terminase,integrase,head,protease

attL 1729723:1729749|attR 1772312:1772338

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1729723:1729749	attL	NA	NA	NA	NA
AWP74451.1\|1729774_1730980_-\|integrase	integrase	Q774Z5	Bordetella_phage	2.2e-233	100.0
AWP74452.1\|1730955_1731165_-	excisionase	Q774Z6	Bordetella_phage	2.4e-31	100.0
AWP74453.1\|1731157_1731385_-	hypothetical protein	Q774Z7	Bordetella_phage	5.8e-39	100.0
AWP74454.1\|1731381_1732776_-	hypothetical protein	Q774Z8	Bordetella_phage	4.2e-273	100.0
AWP74455.1\|1732772_1732997_-	hypothetical protein	Q774Z9	Bordetella_phage	2.2e-38	100.0
AWP74456.1\|1732993_1733200_-	hypothetical protein	Q775A0	Bordetella_phage	5.3e-31	100.0
AWP74457.1\|1733196_1733415_-	hypothetical protein	Q775A1	Bordetella_phage	3.4e-36	100.0
AWP74458.1\|1733411_1733675_-	VRR-NUC domain-containing protein	Q775A2	Bordetella_phage	5.3e-44	100.0
AWP74459.1\|1733763_1735830_-	DNA polymerase I	Q775A3	Bordetella_phage	0.0e+00	100.0
AWP74460.1\|1735829_1736018_-	hypothetical protein	Q775A4	Bordetella_phage	2.3e-33	100.0
AWP77556.1\|1736135_1736684_-	hypothetical protein	Q775A5	Bordetella_phage	1.2e-98	100.0
AWP74461.1\|1736856_1738113_-	hypothetical protein	Q775A7	Bordetella_phage	1.2e-237	99.8
AWP74462.1\|1738109_1738541_-	hypothetical protein	Q775A8	Bordetella_phage	1.2e-74	100.0
AWP74463.1\|1738537_1739563_-	hypothetical protein	Q775A9	Bordetella_phage	2.5e-89	90.6
AWP74464.1\|1739567_1740044_-	hypothetical protein	Q775B0	Bordetella_phage	4.5e-41	100.0
AWP74465.1\|1740049_1740481_-	hypothetical protein	Q775B1	Bordetella_phage	8.4e-71	100.0
AWP74466.1\|1740612_1740828_-	hypothetical protein	Q775B2	Bordetella_phage	3.7e-35	100.0
AWP74467.1\|1740824_1741496_-	hypothetical protein	Q94MM0	Bordetella_phage	9.5e-130	100.0
AWP74468.1\|1741580_1741829_+	transcriptional regulator	Q775B3	Bordetella_phage	6.8e-41	100.0
AWP74469.1\|1741825_1742581_+	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	2.1e-146	100.0
AWP74470.1\|1742597_1745162_+	DNA primase	Q775B5	Bordetella_phage	0.0e+00	100.0
AWP77557.1\|1745173_1745464_-	hypothetical protein	Q775B6	Bordetella_phage	2.4e-53	100.0
AWP74471.1\|1745765_1746002_+	hypothetical protein	Q775B7	Bordetella_phage	4.8e-36	100.0
AWP74472.1\|1746020_1746605_+\|terminase	terminase	Q775B8	Bordetella_phage	1.2e-91	100.0
AWP77558.1\|1746703_1748203_+\|terminase	terminase	Q775B9	Bordetella_phage	3.6e-302	99.8
AWP74473.1\|1748246_1748711_+	GNAT family N-acetyltransferase	Q775C0	Bordetella_phage	9.6e-81	100.0
AWP74474.1\|1748707_1749166_+	hypothetical protein	Q775C1	Bordetella_phage	4.9e-77	100.0
AWP74475.1\|1749169_1749577_+	hypothetical protein	Q775C2	Bordetella_phage	1.3e-17	100.0
AWP74476.1\|1749578_1751246_+\|head,tail	phage head-tail adapter protein	T1S9Z7	Salmonella_phage	4.6e-133	45.3
AWP74477.1\|1751258_1751588_+	hypothetical protein	Q775C4	Bordetella_phage	5.4e-54	100.0
AWP74478.1\|1751630_1751978_+	endopeptidase	Q775C5	Bordetella_phage	4.1e-60	100.0
AWP74479.1\|1751934_1752624_+\|protease	protease	Q775C6	Bordetella_phage	1.0e-110	100.0
AWP74480.1\|1752637_1753633_+	hypothetical protein	Q775C7	Bordetella_phage	2.3e-188	100.0
AWP74481.1\|1753688_1754111_+	hypothetical protein	Q775C8	Bordetella_phage	5.9e-69	100.0
AWP77559.1\|1754138_1754330_+	hypothetical protein	Q775C9	Bordetella_phage	1.0e-28	98.4
AWP74482.1\|1754405_1755077_+	hypothetical protein	Q775D0	Bordetella_phage	1.7e-126	100.0
AWP74483.1\|1755076_1757122_+	hypothetical protein	Q775D1	Bordetella_phage	0.0e+00	100.0
AWP74484.1\|1757181_1757829_+	hypothetical protein	Q775D2	Bordetella_phage	5.6e-79	100.0
AWP74485.1\|1757834_1759997_+	lysin	Q775D3	Bordetella_phage	0.0e+00	100.0
AWP74486.1\|1759993_1766152_+	hypothetical protein	Q775D4	Bordetella_phage	0.0e+00	100.0
AWP74487.1\|1766213_1767740_+	hypothetical protein	Q775D5	Bordetella_phage	7.5e-114	100.0
AWP74488.1\|1767755_1768901_+	hypothetical protein	F4YCR9	Synechococcus_phage	5.0e-38	36.0
AWP74489.1\|1768931_1769318_+	hypothetical protein	Q775D7	Bordetella_phage	6.6e-67	100.0
AWP74490.1\|1769596_1770583_+	Retron-type reverse transcriptase	Q775D8	Bordetella_phage	6.6e-196	100.0
AWP74491.1\|1770563_1770812_+	hypothetical protein	Q775D9	Bordetella_phage	1.6e-42	100.0
AWP74492.1\|1770821_1771073_+	hypothetical protein	Q775E0	Bordetella_phage	4.4e-40	100.0
AWP74493.1\|1771074_1771566_+	hypothetical protein	Q775E1	Bordetella_phage	1.5e-92	100.0
AWP77560.1\|1771626_1772199_+	hypothetical protein	Q775E2	Bordetella_phage	4.6e-85	100.0
AWP77561.1\|1773692_1773911_+	hypothetical protein	NA	NA	NA	NA
1772312:1772338	attR	NA	NA	NA	NA
AWP77562.1\|1774438_1774735_+	hypothetical protein	NA	NA	NA	NA
AWP74494.1\|1774724_1775009_+	hypothetical protein	NA	NA	NA	NA
AWP74495.1\|1775735_1776008_+	hypothetical protein	NA	NA	NA	NA
AWP74496.1\|1776077_1776842_-	DUF1828 domain-containing protein	NA	NA	NA	NA
AWP74497.1\|1776838_1777438_-	hypothetical protein	NA	NA	NA	NA
AWP77563.1\|1777542_1778388_-	hypothetical protein	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
AWP74498.1\|1778455_1779082_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
AWP74499.1\|1779114_1779786_+\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_2

2348247 : 2356313

Moraxella_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP74984.1\|2348247_2348835_+	thymidylate synthase	A0A1X9I5T8	Streptococcus_phage	2.1e-16	46.8
AWP74985.1\|2348853_2349237_-	thiol reductase thioredoxin	V9SJ74	Achromobacter_phage	8.1e-09	25.8
AWP74986.1\|2349372_2350398_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AWP74987.1\|2350603_2351896_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.2e-66	36.0
AWP74988.1\|2352030_2353071_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.3e-92	51.6
AWP74989.1\|2353115_2353763_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AWP74990.1\|2353888_2354647_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	51.2
AWP77593.1\|2354721_2355411_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-32	46.9
AWP74991.1\|2355428_2356313_+	peptidase	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5

DBSCAN-SWA_3

3161738 : 3197320

Pseudomonas_phage(10.71%)

terminase,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWP75665.1\|3161738_3163043_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.4e-129	53.8
AWP75666.1\|3163147_3163801_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	6.8e-56	57.5
AWP75667.1\|3163803_3165114_-	trigger factor	NA	NA	NA	NA
AWP75668.1\|3165292_3165871_+	TIGR00645 family protein	K4K6D8	Caulobacter_phage	7.9e-24	33.7
AWP75669.1\|3165968_3166175_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	8.1e-16	62.1
AWP75670.1\|3166520_3167087_-	hypothetical protein	NA	NA	NA	NA
AWP75671.1\|3167170_3167374_-	cold-shock protein CspA	A0A2H4N7Y6	Lake_Baikal_phage	1.6e-16	62.1
AWP75672.1\|3167680_3168001_-	hypothetical protein	NA	NA	NA	NA
AWP75673.1\|3168042_3168324_-	hypothetical protein	NA	NA	NA	NA
AWP75674.1\|3168398_3169646_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
AWP75675.1\|3170028_3170358_+	hypothetical protein	NA	NA	NA	NA
AWP75676.1\|3170684_3171356_+	DUF159 family protein	Q5QF62	Pseudomonas_virus	1.6e-36	40.3
AWP75677.1\|3171362_3171563_-	hypothetical protein	NA	NA	NA	NA
AWP75678.1\|3171561_3172191_+	alpha/beta hydrolase	NA	NA	NA	NA
AWP75679.1\|3172190_3172472_+	hypothetical protein	NA	NA	NA	NA
AWP75680.1\|3172468_3173002_-	hypothetical protein	NA	NA	NA	NA
AWP75681.1\|3172983_3173535_-	lysozyme	NA	NA	NA	NA
AWP75682.1\|3173513_3173756_-	hypothetical protein	NA	NA	NA	NA
AWP75683.1\|3173760_3174573_-	hypothetical protein	NA	NA	NA	NA
AWP75684.1\|3174572_3174836_-	hypothetical protein	NA	NA	NA	NA
AWP75685.1\|3175054_3175471_-	hypothetical protein	NA	NA	NA	NA
AWP75686.1\|3175475_3179432_-	hypothetical protein	A0A0B5A1N2	Achromobacter_phage	5.5e-217	41.3
AWP75687.1\|3179424_3179814_-	hypothetical protein	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
AWP75688.1\|3179810_3180344_-	hypothetical protein	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
AWP75689.1\|3180411_3180771_-	hypothetical protein	NA	NA	NA	NA
AWP75690.1\|3180780_3183216_-\|tail	phage tail tape measure protein	A0A1V0E821	Vibrio_phage	1.2e-97	34.8
AWP75691.1\|3183241_3183532_-	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	2.0e-15	43.0
AWP75692.1\|3183549_3183879_-	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
AWP75693.1\|3183888_3184407_-\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-24	38.3
AWP75694.1\|3184661_3185162_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	4.4e-31	45.1
AWP75695.1\|3185169_3185592_-	hypothetical protein	I6PDJ8	Cronobacter_phage	2.6e-08	29.2
AWP75696.1\|3185588_3185987_-	hypothetical protein	A0A088FBW9	Salmonella_phage	2.6e-18	37.8
AWP75697.1\|3185983_3186379_-	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	6.0e-07	35.0
AWP75698.1\|3186378_3186579_-	hypothetical protein	NA	NA	NA	NA
AWP75699.1\|3186580_3187060_-	hypothetical protein	A0A088C4X4	Shewanella_sp._phage	1.2e-12	39.3
AWP75700.1\|3187053_3187503_-	hypothetical protein	I6WLM5	Burkholderia_virus	2.2e-29	51.6
AWP75701.1\|3187565_3187817_-	hypothetical protein	NA	NA	NA	NA
AWP75702.1\|3187826_3188795_-	hypothetical protein	R9TJ64	Synechococcus_phage	1.3e-124	72.3
AWP75703.1\|3188821_3189424_-	hypothetical protein	R9TF81	Synechococcus_phage	2.6e-30	47.5
AWP75704.1\|3189546_3189789_-	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	1.5e-16	54.5
AWP75705.1\|3189794_3190850_-	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	5.2e-98	50.8
AWP75706.1\|3190878_3192297_-	hypothetical protein	R9TF43	Synechococcus_phage	4.8e-99	42.1
AWP75707.1\|3192299_3193577_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
AWP75708.1\|3193563_3194049_-\|terminase	terminase	C7U0W1	Enterobacteria_phage	1.2e-38	62.3
AWP75709.1\|3194240_3194501_-	hypothetical protein	NA	NA	NA	NA
AWP75710.1\|3194513_3194954_-	hypothetical protein	NA	NA	NA	NA
AWP75711.1\|3194950_3195157_-	hypothetical protein	NA	NA	NA	NA
AWP77646.1\|3195153_3195972_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	1.2e-22	43.8
AWP75712.1\|3196091_3196568_-	hypothetical protein	NA	NA	NA	NA
AWP75713.1\|3196564_3197320_-	hypothetical protein	U6C6D0	Ralstonia_phage	1.7e-26	38.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP020649

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection