CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP021165	Klebsiella pneumoniae strain 203 chromosome, complete genome	2 crisprs	cas3,csa3,DEDDh,DinG,WYL,RT	0	0	8	0
CP021166	Klebsiella pneumoniae strain 203 plasmid p203, complete sequence	0 crisprs	csa3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP021165_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP021165_1

2018774-2018869

Orphan

Consensus_repeat	Method
GCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP021165_1

>merge|CP021165|1|2018774-2018869|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

>CP021165|1|1|2018774-2018869|CRISPRCasFinder
GCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CAGCAGAACAGGTGGCTGAGAGTGCAGGAATGTGTA
GCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP021165.1\|AWQ52361.1\|2017268_2018165_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
CP021165.1\|AWQ52370.1\|2026384_2029060_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
CP021165.1\|AWQ52356.1\|2008818_2010207_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
CP021165.1\|AWQ52360.1\|2016594_2017272_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
CP021165.1\|AWQ52357.1\|2010612_2014356_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
CP021165.1\|AWQ52363.1\|2019967_2020810_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
CP021165.1\|AWQ52369.1\|2025619_2026237_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
CP021165.1\|AWQ52362.1\|2018272_2018716_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP021165.1\|AWQ52364.1\|2020852_2021323_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234966
CP021165.1\|AWQ52368.1\|2024650_2025058_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|182858
CP021165.1\|AWQ52358.1\|2014352_2015888_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
CP021165.1\|AWQ52355.1\|2006728_2008507_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
CP021165.1\|AWQ52353.1\|2004688_2006071_+\|YchO-family-inverse-autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|236661
CP021165.1\|AWQ52354.1\|2006067_2006718_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|182619
CP021165.1\|AWQ52371.1\|2029137_2029323_+\|hypothetical-protein	unknown	unknown	unknown
CP021165.1\|AWQ52366.1\|2022415_2023429_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
CP021165.1\|AWQ52372.1\|2029536_2030184_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236850
CP021165.1\|AWQ52367.1\|2023626_2024529_+\|UTP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|184021
CP021165.1\|AWQ52365.1\|2021423_2022326_+\|patatin-family-protein	unknown	unknown	gnl\|CDD\|182352
CP021165.1\|AWQ52359.1\|2015884_2016595_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014

Protein	Function_ID	Function_description	E-value
CP021165.1\|AWQ52361.1\|2017268_2018165_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	8.52737e-16
CP021165.1\|AWQ52370.1\|2026384_2029060_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
CP021165.1\|AWQ52356.1\|2008818_2010207_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
CP021165.1\|AWQ52360.1\|2016594_2017272_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
CP021165.1\|AWQ52357.1\|2010612_2014356_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
CP021165.1\|AWQ52363.1\|2019967_2020810_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.09997e-176
CP021165.1\|AWQ52369.1\|2025619_2026237_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.66434e-117
CP021165.1\|AWQ52362.1\|2018272_2018716_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05574e-32
CP021165.1\|AWQ52364.1\|2020852_2021323_-\|hypothetical-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	3.29241e-106
CP021165.1\|AWQ52368.1\|2024650_2025058_-\|transcriptional-regulator	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79
CP021165.1\|AWQ52358.1\|2014352_2015888_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
CP021165.1\|AWQ52355.1\|2006728_2008507_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
CP021165.1\|AWQ52353.1\|2004688_2006071_+\|YchO-family-inverse-autotransporter-domain-containing-protein	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
CP021165.1\|AWQ52354.1\|2006067_2006718_-\|DNA-binding-response-regulator	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.26442e-140
CP021165.1\|AWQ52366.1\|2022415_2023429_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
CP021165.1\|AWQ52372.1\|2029536_2030184_+\|hypothetical-protein	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	2.15923e-137
CP021165.1\|AWQ52367.1\|2023626_2024529_+\|UTP--glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
CP021165.1\|AWQ52365.1\|2021423_2022326_+\|patatin-family-protein	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
CP021165.1\|AWQ52359.1\|2015884_2016595_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.14838e-83

>CP021165.1|AWQ52362.1|2018272_2018716_+|AsnC-family-transcriptional-regulator
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPL
>CP021165.1|AWQ52361.1|2017268_2018165_-|EamA-family-transporter
MQLTRGVWQMSLAMIISGSIGAFVLLSGLPVADVVFWRCLIGALTLLVFIVLSRQPFSRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQPFMLVLMGMVLGERVSAVKWGWLLLAFGGVVILLSSELTPAHEEGLTTGVLLALGAAFFYALTAIIARKLHPLPAQHIAFIQVLVGVVMLLPLVHAPELTASFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLVAMVVDYLVFHHALSAVQLLGGMLILFAAAGNNLGWGEKKPRRGGVSEQSRAS
>CP021165.1|AWQ52360.1|2016594_2017272_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>CP021165.1|AWQ52359.1|2015884_2016595_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>CP021165.1|AWQ52358.1|2014352_2015888_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>CP021165.1|AWQ52357.1|2010612_2014356_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWDIYKGIAKKFSEVCMGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>CP021165.1|AWQ52356.1|2008818_2010207_+|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>CP021165.1|AWQ52355.1|2006728_2008507_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>CP021165.1|AWQ52354.1|2006067_2006718_-|DNA-binding-response-regulator
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>CP021165.1|AWQ52353.1|2004688_2006071_+|YchO-family-inverse-autotransporter-domain-containing-protein
MPVSFRLLPTLTFLLLLPGVPVWALTASDTTRPAQAQDPLPDMGIAPQVDDDARHFAEVAKKFGEASMSDNGLTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQRWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRDNQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDNLPVVEYRQRKNLTVYLATPPWDLQSGETVQLKLQIHSLHGIKALHWQGDTQALSLTPPVDASSPDGWSIIMPVWNSEPGAANRWRLSVVVEDKQGQRVSSNEIALALTEPLVKFTTPGVSWTDSP
>CP021165.1|AWQ52363.1|2019967_2020810_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDAIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>CP021165.1|AWQ52364.1|2020852_2021323_-|hypothetical-protein
MEAVLSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>CP021165.1|AWQ52365.1|2021423_2022326_+|patatin-family-protein
MRKLKIGLALGAGAARGWSHIGVINALQRAGIEIDIVAGCSIGSLVGAAYACNRLPALESWVCSFSNWDVLKLMDLSWRRGGLLRGEKVFNHYRRIMPVTEIERCERRFAAVATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLFSLETPRQEAEEKEGPWHTRLRARLTRMSSRRTAVTPTAMEIMTTSIQVLENRLKRNRMAGDPPDILLQPYCPQVSTLDFHRAGEAIAAGQLAVEKKMDELLPLVRTAV
>CP021165.1|AWQ52366.1|2022415_2023429_+|two-component-system-response-regulator-RssB
MTQPLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFDRLRETVYACLYPAMFSSRVEEEERLFEDWDALVSNPIAASRLLQELQPPVQQEMSHCRIHYRQLVSADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGSLLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHQIQISNGVPLGTLGDAYLNQISQRCTSWQCQIWGAGGRLRLMLSAE
>CP021165.1|AWQ52367.1|2023626_2024529_+|UTP--glucose-1-phosphate-uridylyltransferase
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>CP021165.1|AWQ52368.1|2024650_2025058_-|transcriptional-regulator
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>CP021165.1|AWQ52369.1|2025619_2026237_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPARLYNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTREQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSVGSLTKVQNQHRPC
>CP021165.1|AWQ52370.1|2026384_2029060_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>CP021165.1|AWQ52371.1|2029137_2029323_+|hypothetical-protein
MHVNVYVEKSGRCFTDLLKKLYLFRFQVLLPSTLLVSSRLLTSEYKLRDLDQVLSLLIPFS
>CP021165.1|AWQ52372.1|2029536_2030184_+|hypothetical-protein
MTQSLFDFSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVAIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLLS

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Crispr_ID: CP021165_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP021165_2

4352309-4352403

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP021165_2

>merge|CP021165|2|4352309-4352403|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP021165|2|2|4352309-4352403|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP021165.1\|AWQ54522.1\|4361847_4362696_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP021165.1\|AWQ54512.1\|4349402_4350062_+\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP021165.1\|AWQ54516.1\|4354159_4354858_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP021165.1\|AWQ54519.1\|4359655_4360645_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP021165.1\|AWQ54518.1\|4358363_4359650_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|236758
CP021165.1\|AWQ54520.1\|4360641_4361463_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP021165.1\|AWQ54509.1\|4343067_4343763_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP021165.1\|AWQ54524.1\|4363423_4363546_-\|dihydrofolate-reductase	unknown	unknown	unknown
CP021165.1\|AWQ55433.1\|4350638_4350827_+\|hypothetical-protein	unknown	unknown	unknown
CP021165.1\|AWQ54506.1\|4338524_4339370_-\|DNA-binding-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP021165.1\|AWQ54508.1\|4341427_4342930_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP021165.1\|AWQ54513.1\|4350136_4350676_-\|phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
CP021165.1\|AWQ54521.1\|4361465_4361843_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP021165.1\|AWQ54507.1\|4339707_4341417_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP021165.1\|AWQ54510.1\|4343938_4346296_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP021165.1\|AWQ54511.1\|4346483_4349390_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP021165.1\|AWQ54514.1\|4350855_4352220_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP021165.1\|AWQ54523.1\|4362947_4363427_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP021165.1\|AWQ54515.1\|4352544_4354170_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP021165.1\|AWQ54517.1\|4354890_4355718_-\|molecular-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512

Protein	Function_ID	Function_description	E-value
CP021165.1\|AWQ54522.1\|4361847_4362696_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP021165.1\|AWQ54512.1\|4349402_4350062_+\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
CP021165.1\|AWQ54516.1\|4354159_4354858_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
CP021165.1\|AWQ54519.1\|4359655_4360645_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP021165.1\|AWQ54518.1\|4358363_4359650_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP021165.1\|AWQ54520.1\|4360641_4361463_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP021165.1\|AWQ54509.1\|4343067_4343763_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP021165.1\|AWQ54506.1\|4338524_4339370_-\|DNA-binding-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP021165.1\|AWQ54508.1\|4341427_4342930_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP021165.1\|AWQ54513.1\|4350136_4350676_-\|phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP021165.1\|AWQ54521.1\|4361465_4361843_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP021165.1\|AWQ54507.1\|4339707_4341417_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP021165.1\|AWQ54510.1\|4343938_4346296_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP021165.1\|AWQ54511.1\|4346483_4349390_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP021165.1\|AWQ54514.1\|4350855_4352220_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP021165.1\|AWQ54523.1\|4362947_4363427_-\|dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	9.80354e-127
CP021165.1\|AWQ54515.1\|4352544_4354170_+\|histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP021165.1\|AWQ54517.1\|4354890_4355718_-\|molecular-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164

>CP021165.1|AWQ54514.1|4350855_4352220_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP021165.1|AWQ55433.1|4350638_4350827_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFRSGK
>CP021165.1|AWQ54513.1|4350136_4350676_-|phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP021165.1|AWQ54512.1|4349402_4350062_+|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP021165.1|AWQ54511.1|4346483_4349390_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP021165.1|AWQ54510.1|4343938_4346296_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP021165.1|AWQ54509.1|4343067_4343763_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP021165.1|AWQ54508.1|4341427_4342930_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP021165.1|AWQ54507.1|4339707_4341417_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP021165.1|AWQ54506.1|4338524_4339370_-|DNA-binding-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP021165.1|AWQ54515.1|4352544_4354170_+|histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP021165.1|AWQ54516.1|4354159_4354858_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP021165.1|AWQ54517.1|4354890_4355718_-|molecular-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP021165.1|AWQ54518.1|4358363_4359650_+|peptidyl-prolyl-cis-trans-isomerase
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP021165.1|AWQ54519.1|4359655_4360645_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP021165.1|AWQ54520.1|4360641_4361463_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP021165.1|AWQ54521.1|4361465_4361843_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP021165.1|AWQ54522.1|4361847_4362696_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP021165.1|AWQ54523.1|4362947_4363427_-|dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVHWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>CP021165.1|AWQ54524.1|4363423_4363546_-|dihydrofolate-reductase
MNVGLPANQKIFLFFTLRPVDEVVRFPYSGDNFLHSGMNE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1668811 : 1675716

Planktothrix_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ55309.1\|1668811_1669675_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
AWQ52062.1\|1669685_1670459_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
AWQ55310.1\|1670699_1671593_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AWQ52063.1\|1671838_1673200_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AWQ52064.1\|1673518_1674241_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.3e-31	33.2
AWQ52065.1\|1674237_1675716_-	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

1714981 : 1733370

Escherichia_phage(35.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ52089.1\|1714981_1716361_+	hypothetical protein	K4MM73	Escherichia_phage	2.0e-118	48.9
AWQ52090.1\|1716549_1717956_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	3.4e-36	27.8
AWQ52091.1\|1718178_1719243_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-105	55.0
AWQ52092.1\|1719269_1720139_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.7e-111	67.0
AWQ52093.1\|1720170_1721061_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
AWQ52094.1\|1721075_1721630_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.1e-51	57.6
AWQ52095.1\|1721810_1722977_+	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	9.1e-112	53.5
AWQ52096.1\|1723921_1724926_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	5.2e-31	29.2
AWQ52097.1\|1724881_1725163_+	hypothetical protein	NA	NA	NA	NA
AWQ52098.1\|1725765_1726830_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-105	54.7
AWQ52099.1\|1726843_1727713_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.7e-111	67.0
AWQ52100.1\|1727744_1728635_+	NAD(P)-dependent oxidoreductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
AWQ52101.1\|1728649_1729204_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.1e-51	57.6
AWQ52102.1\|1729926_1730895_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-180	96.6
AWQ52103.1\|1731215_1732049_+	sugar ABC transporter permease	NA	NA	NA	NA
AWQ52104.1\|1732038_1733370_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.9e-15	29.1

DBSCAN-SWA_3

2639177 : 2650065

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ52956.1\|2639177_2642285_+	beta-D-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
AWQ52957.1\|2642339_2643593_+	MFS transporter	NA	NA	NA	NA
AWQ52958.1\|2643635_2644724_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
AWQ52959.1\|2644810_2645071_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AWQ52960.1\|2645368_2646229_+	class A beta-lactamase	A0A077SL40	Escherichia_phage	2.2e-155	99.0
AWQ52961.1\|2646249_2647011_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AWQ52962.1\|2647001_2647235_+	hypothetical protein	NA	NA	NA	NA
AWQ52963.1\|2647272_2648175_+	oxidoreductase	A0A077SLF7	Escherichia_phage	5.9e-159	99.3
AWQ52964.1\|2648186_2649452_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	1.9e-232	99.3
AWQ52965.1\|2649444_2650065_+	class II aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

2903572 : 2916026

Klebsiella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ53192.1\|2903572_2904838_-	DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	3.9e-209	83.4
AWQ53193.1\|2904839_2905259_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
AWQ53194.1\|2905808_2906231_-	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
AWQ53195.1\|2906308_2906857_-	DNA-invertase	A0A286S1P7	Klebsiella_phage	4.3e-88	91.7
AWQ53196.1\|2906950_2908555_+	hypothetical protein	NA	NA	NA	NA
AWQ53197.1\|2908569_2908836_+	hypothetical protein	NA	NA	NA	NA
AWQ53198.1\|2908868_2909123_-	hypothetical protein	K4MPX1	Escherichia_phage	9.7e-19	56.6
AWQ55368.1\|2909129_2910554_-	hypothetical protein	K4MM73	Escherichia_phage	3.9e-173	60.8
AWQ53199.1\|2911627_2914696_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	90.7
AWQ53200.1\|2914692_2915073_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.3e-64	89.7
AWQ53201.1\|2915082_2915565_-	ArsR family transcriptional regulator	A0A286S2B1	Klebsiella_phage	7.2e-79	90.6
AWQ53202.1\|2915561_2916026_-	hypothetical protein	A0A286S298	Klebsiella_phage	1.3e-53	59.9

DBSCAN-SWA_5

2919710 : 2938884

Klebsiella_phage(23.08%)

terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ55369.1\|2919710_2920079_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	2.5e-15	42.9
AWQ53204.1\|2920189_2920546_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
AWQ53205.1\|2920622_2920799_-	hypothetical protein	NA	NA	NA	NA
AWQ53206.1\|2920966_2921449_-	hypothetical protein	NA	NA	NA	NA
AWQ53207.1\|2921502_2922675_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
AWQ53208.1\|2922698_2923091_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AWQ53209.1\|2923087_2923639_-	hypothetical protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
AWQ53210.1\|2923640_2924024_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	9.2e-21	45.2
AWQ53211.1\|2924010_2924244_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
AWQ53212.1\|2924253_2924508_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-20	52.4
AWQ53213.1\|2924509_2924905_-	protein singed	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
AWQ53214.1\|2925226_2926180_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
AWQ53215.1\|2926190_2926976_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	7.8e-67	64.4
AWQ53216.1\|2927060_2928173_-	hypothetical protein	I6PD76	Cronobacter_phage	2.8e-110	55.2
AWQ53217.1\|2928156_2929557_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	7.1e-127	52.9
AWQ53218.1\|2929556_2930864_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
AWQ53219.1\|2930841_2931846_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.3e-34	43.5
AWQ53220.1\|2932394_2932577_-	hypothetical protein	NA	NA	NA	NA
AWQ53221.1\|2932708_2932954_-	hypothetical protein	A0A286N2R1	Klebsiella_phage	1.8e-33	95.1
AWQ53222.1\|2933767_2933962_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.4e-25	89.1
AWQ53223.1\|2933912_2934188_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
AWQ53224.1\|2934184_2934529_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.6e-48	94.7
AWQ53225.1\|2934525_2935065_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	1.5e-101	99.4
AWQ53226.1\|2935061_2935373_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
AWQ53227.1\|2936013_2936703_-	antiterminator	I6PDF8	Cronobacter_phage	8.4e-57	54.5
AWQ53228.1\|2936699_2936840_-	hypothetical protein	NA	NA	NA	NA
AWQ53229.1\|2936836_2937199_-	hypothetical protein	K7PM48	Enterobacteria_phage	2.1e-51	81.5
AWQ53230.1\|2937195_2937486_-	hypothetical protein	K7PGZ6	Enterobacteria_phage	1.8e-45	89.6
AWQ53231.1\|2937488_2937695_-	hypothetical protein	S4TNP0	Salmonella_phage	1.2e-19	61.8
AWQ53232.1\|2937694_2938294_-	DUF1367 domain-containing protein	K7PKS6	Enterobacteria_phage	6.6e-90	79.4
AWQ53233.1\|2938351_2938573_-	hypothetical protein	NA	NA	NA	NA
AWQ53234.1\|2938650_2938884_-	DNA damage-inducible protein I	K7PM44	Enterobacteria_phage	2.9e-25	68.8

DBSCAN-SWA_6

2942436 : 2958530

Salmonella_phage(35.0%)

integrase

attL 2946412:2946426|attR 2957830:2957844

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ53240.1\|2942436_2942673_-	hypothetical protein	A0A2R2Z309	Escherichia_phage	2.9e-33	92.2
AWQ53241.1\|2942665_2942869_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	5.7e-30	92.5
AWQ53242.1\|2942865_2943651_-	hypothetical protein	C7BGF1	Burkholderia_phage	9.6e-65	53.3
AWQ53243.1\|2943643_2943979_-	hypothetical protein	H6WRX9	Salmonella_phage	4.4e-11	43.0
AWQ53244.1\|2943971_2944715_-	Replication protein P	A0A0M3ULE2	Salmonella_phage	5.3e-65	55.2
AWQ53245.1\|2944711_2945638_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.4e-91	60.5
AWQ53246.1\|2945985_2946522_-	hypothetical protein	M9NZI6	Enterobacteria_phage	5.4e-59	67.8
2946412:2946426	attL	NA	NA	NA	NA
AWQ53247.1\|2946524_2946755_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	4.7e-20	63.5
AWQ53248.1\|2946895_2947456_+	transcriptional regulator	A0A0M4R5D1	Salmonella_phage	2.0e-08	38.3
AWQ53249.1\|2947645_2947954_+	hypothetical protein	G8C7T6	Escherichia_phage	8.4e-25	61.2
AWQ53250.1\|2948250_2948442_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AWQ53251.1\|2948450_2948606_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.0e-14	71.2
AWQ53252.1\|2948743_2951878_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	3.7e-293	56.4
AWQ53253.1\|2951890_2953000_+	enterohemolysin	H6WRX0	Salmonella_phage	1.1e-183	86.2
AWQ55370.1\|2953043_2953700_+	hypothetical protein	M1F3E2	Salmonella_phage	3.5e-68	62.7
AWQ53254.1\|2953696_2954005_+	hypothetical protein	I6PD68	Cronobacter_phage	4.2e-24	56.9
AWQ55371.1\|2954012_2954252_+	hypothetical protein	M9P0E0	Enterobacteria_phage	8.0e-23	70.1
AWQ53255.1\|2954261_2954576_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
AWQ53256.1\|2954472_2955660_-\|integrase	integrase	K7PGY1	Enterobacteria_phage	4.2e-120	52.2
AWQ53257.1\|2955836_2956727_+	antimicrobial peptide ABC transporter permease SapC	NA	NA	NA	NA
AWQ53258.1\|2956726_2957719_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-07	27.2
AWQ53259.1\|2957720_2958530_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
2957830:2957844	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3102638 : 3146253

Escherichia_phage(20.59%)

integrase,tail,head,plate,capsid,tRNA,terminase,portal

attL 3114563:3114576|attR 3143569:3143582

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ53406.1\|3102638_3103061_-	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
AWQ53407.1\|3103138_3103687_-	DNA-invertase	A0A286S1P7	Klebsiella_phage	4.3e-88	91.7
AWQ53408.1\|3103780_3105385_+	hypothetical protein	NA	NA	NA	NA
AWQ53409.1\|3105399_3105666_+	hypothetical protein	NA	NA	NA	NA
AWQ53410.1\|3105698_3105953_-	hypothetical protein	K4MPX1	Escherichia_phage	9.7e-19	56.6
AWQ55378.1\|3105959_3107384_-	hypothetical protein	K4MM73	Escherichia_phage	5.6e-172	60.4
AWQ53411.1\|3108607_3109669_+	acyltransferase	A0A193GZ69	Enterobacter_phage	3.8e-08	22.8
AWQ53412.1\|3110204_3110888_-\|tail	phage tail protein	A0A2P9JZK7	Alteromonadaceae_phage	8.4e-33	37.2
AWQ53413.1\|3110884_3112033_-\|plate	phage baseplate protein	R9TN81	Rhizobium_phage	4.1e-16	25.6
AWQ53414.1\|3112022_3112472_-	hypothetical protein	A0A0C4UR04	Shigella_phage	3.3e-17	42.1
AWQ53415.1\|3112468_3113050_-\|plate	baseplate assembly protein	NA	NA	NA	NA
AWQ53416.1\|3113046_3114132_-\|tail	phage tail protein	Q8SBG7	Shigella_phage	1.4e-37	30.2
AWQ53417.1\|3114128_3115529_-	hypothetical protein	A0A2P9JZK2	Alteromonadaceae_phage	4.0e-05	42.0
3114563:3114576	attL	NA	NA	NA	NA
AWQ53418.1\|3115576_3117430_-	hypothetical protein	A0A172JGI1	Citrobacter_phage	2.0e-20	44.5
AWQ53419.1\|3117422_3117614_-	hypothetical protein	NA	NA	NA	NA
AWQ53420.1\|3117571_3117850_-	hypothetical protein	NA	NA	NA	NA
AWQ53421.1\|3117851_3118223_-\|tail	phage tail protein	NA	NA	NA	NA
AWQ53422.1\|3118226_3119738_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	2.0e-103	44.4
AWQ53423.1\|3119734_3119920_-	hypothetical protein	NA	NA	NA	NA
AWQ53424.1\|3119922_3120468_-	ATP-binding protein	NA	NA	NA	NA
AWQ53425.1\|3120464_3120824_-	hypothetical protein	NA	NA	NA	NA
AWQ53426.1\|3120828_3121239_-	hypothetical protein	NA	NA	NA	NA
AWQ53427.1\|3121210_3122260_-\|capsid	minor capsid protein E	V5Q8G6	Xylella_phage	1.2e-51	34.0
AWQ53428.1\|3122358_3122766_-\|head	head decoration protein	NA	NA	NA	NA
AWQ53429.1\|3122765_3123356_-	hypothetical protein	NA	NA	NA	NA
AWQ53430.1\|3123357_3124224_-	serine peptidase	A0A248XD65	Klebsiella_phage	1.1e-48	48.1
AWQ53431.1\|3124220_3125855_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	8.1e-90	35.2
AWQ53432.1\|3125854_3126118_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AWQ53433.1\|3126126_3128253_-\|terminase	terminase	A0A0C5ABH4	Bacteriophage	1.0e-97	34.5
AWQ53434.1\|3128194_3128776_-	hypothetical protein	NA	NA	NA	NA
AWQ53435.1\|3129111_3129387_+	hypothetical protein	A9YWZ2	Burkholderia_phage	3.4e-09	40.7
AWQ53436.1\|3129583_3130222_-	hypothetical protein	NA	NA	NA	NA
AWQ53437.1\|3130322_3130856_-	hypothetical protein	NA	NA	NA	NA
AWQ53438.1\|3131098_3131488_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	7.2e-21	45.2
AWQ53439.1\|3131484_3132009_-	glycoside hydrolase	Q71TF3	Escherichia_phage	8.4e-49	53.6
AWQ53440.1\|3131992_3132313_-	hypothetical protein	O64361	Escherichia_phage	3.1e-22	51.1
AWQ53441.1\|3132472_3132712_-	hypothetical protein	NA	NA	NA	NA
AWQ53442.1\|3132861_3133440_-	hypothetical protein	A0A0U2S606	Escherichia_phage	2.2e-50	56.7
AWQ53443.1\|3133453_3134434_-	hypothetical protein	A0A291AWV9	Escherichia_phage	9.9e-136	67.5
AWQ53444.1\|3134435_3134813_-	hypothetical protein	A0A1C9IIA0	Salmonella_phage	2.1e-46	74.2
AWQ53445.1\|3134822_3135632_-	DNA methylase	A0A1C9II58	Salmonella_phage	5.9e-110	68.5
AWQ53446.1\|3135628_3136543_-	transcriptional regulator	H2DE83	Erwinia_phage	2.4e-30	59.6
AWQ53447.1\|3136499_3136712_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.1e-15	70.9
AWQ53448.1\|3136949_3137402_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.5e-67	87.8
AWQ53449.1\|3137436_3137634_-	hypothetical protein	K7PHB1	Enterobacterial_phage	3.0e-23	84.6
AWQ53450.1\|3137733_3138390_+	LexA family transcriptional repressor	K7PLZ5	Enterobacterial_phage	1.5e-108	88.1
AWQ53451.1\|3138734_3139034_+	hypothetical protein	K7PJS4	Enterobacterial_phage	8.5e-14	48.6
AWQ53452.1\|3139033_3139819_+	hypothetical protein	C7BGF1	Burkholderia_phage	7.6e-62	51.8
AWQ53453.1\|3139946_3140291_+	hypothetical protein	NA	NA	NA	NA
AWQ53454.1\|3140690_3140963_+	hypothetical protein	K7PKM4	Enterobacterial_phage	2.2e-13	47.1
AWQ53455.1\|3140992_3141229_+	excisionase	NA	NA	NA	NA
AWQ53456.1\|3141218_3142361_+\|integrase	integrase	Q77Z02	Phage_21	2.9e-171	81.4
AWQ53457.1\|3142473_3143724_-	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	1.1e-19	92.6
3143569:3143582	attR	NA	NA	NA	NA
AWQ53458.1\|3143964_3144615_+	23S rRNA pseudouridine(2457) synthase	NA	NA	NA	NA
AWQ53459.1\|3144631_3145090_+	NUDIX hydrolase	NA	NA	NA	NA
AWQ55379.1\|3145146_3146253_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_8

3383835 : 3393309

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ53662.1\|3383835_3385557_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AWQ53663.1\|3385601_3386303_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AWQ53664.1\|3386656_3386875_+	translation initiation factor IF-1	NA	NA	NA	NA
AWQ53665.1\|3387005_3389285_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AWQ53666.1\|3389315_3389633_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AWQ53667.1\|3389958_3390180_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AWQ53668.1\|3390113_3390317_-	hypothetical protein	NA	NA	NA	NA
AWQ53669.1\|3390256_3392197_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AWQ53670.1\|3392193_3393309_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP021166

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1931 : 46315

Escherichia_phage(31.03%)

transposase,integrase

attL 13549:13608|attR 41164:44990

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ55472.1\|1931_2807_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AWQ55473.1\|2853_3186_-	tryptophan synthase subunit beta like protein	NA	NA	NA	NA
AWQ55474.1\|3202_5995_+\|transposase	DDE transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.9
AWQ55475.1\|6064_6769_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55476.1\|6659_6983_-	hypothetical protein	U5P0U6	Shigella_phage	2.7e-21	69.7
AWQ55477.1\|7087_8521_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
AWQ55478.1\|8554_9763_-	restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
AWQ55479.1\|9775_9988_-	resolvase	NA	NA	NA	NA
AWQ55480.1\|10029_10794_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AWQ55481.1\|10936_11203_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
AWQ55482.1\|11423_11906_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	6.6e-16	28.9
AWQ55483.1\|12052_13066_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWQ55484.1\|13024_13204_-	transcriptional regulator	NA	NA	NA	NA
13549:13608	attL	NA	NA	NA	NA
AWQ55485.1\|13611_14316_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55644.1\|14459_15014_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AWQ55645.1\|15144_15975_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
AWQ55486.1\|16606_17311_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55487.1\|17718_17898_+	transcriptional regulator	NA	NA	NA	NA
AWQ55488.1\|17856_18870_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AWQ55489.1\|19016_19499_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	6.6e-16	28.9
AWQ55490.1\|19719_19986_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
AWQ55491.1\|20128_20893_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AWQ55492.1\|20934_21147_+	resolvase	NA	NA	NA	NA
AWQ55493.1\|21159_22368_+	restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
AWQ55494.1\|22401_23835_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
AWQ55495.1\|23939_24263_+	hypothetical protein	U5P0U6	Shigella_phage	2.7e-21	69.7
AWQ55496.1\|24153_24858_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55497.1\|24927_27720_-\|transposase	DDE transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.9
AWQ55498.1\|27736_28069_+	tryptophan synthase subunit beta like protein	NA	NA	NA	NA
AWQ55499.1\|28115_28991_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
AWQ55500.1\|29246_30509_-\|transposase	IS1380 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AWQ55501.1\|30690_31068_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.5e-68	100.0
AWQ55502.1\|31072_31630_+\|transposase	transposase	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
AWQ55503.1\|31812_32673_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AWQ55504.1\|32882_33422_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AWQ55505.1\|33393_34230_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AWQ55506.1\|34229_35033_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AWQ55507.1\|36238_36415_+\|integrase	integrase	T1S9J3	Salmonella_phage	1.0e-06	68.6
AWQ55508.1\|37460_38165_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55646.1\|38796_39627_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
AWQ55647.1\|39757_40312_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AWQ55509.1\|40455_41160_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55648.1\|41540_42497_+	hypothetical protein	NA	NA	NA	NA
AWQ55510.1\|42681_43293_-	hypothetical protein	NA	NA	NA	NA
AWQ55511.1\|43346_43628_-	cytoplasmic protein	NA	NA	NA	NA
AWQ55512.1\|43800_44136_+	hypothetical protein	NA	NA	NA	NA
AWQ55513.1\|45156_45861_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
41164:44990	attR	NA	NA	NA	NA
AWQ55514.1\|45919_46315_+\|transposase	transposase	A0A219Y912	Aeromonas_phage	4.9e-25	51.6

DBSCAN-SWA_2

134734 : 175198

uncultured_Caudovirales_phage(53.85%)

transposase,integrase

attL 152134:152148|attR 173158:173172

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ55611.1\|134734_135703_-\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	1.0e-180	96.6
AWQ55612.1\|135780_136152_+	conjugal transfer protein TraT	NA	NA	NA	NA
AWQ55659.1\|136650_137034_+	hypothetical protein	NA	NA	NA	NA
AWQ55613.1\|137160_139470_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
AWQ55614.1\|139469_144728_+	conjugal transfer protein TraI	NA	NA	NA	NA
AWQ55615.1\|144817_145543_+	type-F conjugative transfer system pilin acetylase TraX	NA	NA	NA	NA
AWQ55616.1\|145697_146294_+	conjugal transfer protein	NA	NA	NA	NA
AWQ55617.1\|146313_146661_+	hypothetical protein	NA	NA	NA	NA
AWQ55618.1\|147131_147776_+	hypothetical protein	NA	NA	NA	NA
AWQ55619.1\|147831_148482_+	hypothetical protein	NA	NA	NA	NA
AWQ55620.1\|148478_148790_+	hypothetical protein	K7PKY8	Enterobacterial_phage	2.1e-15	40.0
AWQ55621.1\|149286_149619_+	transcriptional regulator	NA	NA	NA	NA
AWQ55622.1\|149615_150338_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.5e-96	73.0
AWQ55623.1\|150395_150824_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	70.7
AWQ55624.1\|150873_152157_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	74.6
152134:152148	attL	NA	NA	NA	NA
AWQ55625.1\|152252_152606_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	5.9e-22	57.1
AWQ55626.1\|153089_154568_+	sodium-independent anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.6e-198	74.0
AWQ55627.1\|154586_155414_+	universal stress protein	NA	NA	NA	NA
AWQ55628.1\|155485_156682_-	MFS transporter	NA	NA	NA	NA
AWQ55629.1\|157210_157585_+	fluoride ion transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	4.5e-28	56.0
AWQ55630.1\|157826_159008_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.8e-123	65.9
AWQ55631.1\|159361_159694_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AWQ55632.1\|159956_160661_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55633.1\|160637_160847_+	hypothetical protein	NA	NA	NA	NA
AWQ55660.1\|161623_162016_+	isochorismatase	NA	NA	NA	NA
AWQ55634.1\|162153_163038_+	EamA family transporter	NA	NA	NA	NA
AWQ55635.1\|163069_164269_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AWQ55636.1\|164347_165025_+	TetR family transcriptional regulator	NA	NA	NA	NA
AWQ55662.1\|165056_165299_-	relaxase	NA	NA	NA	NA
AWQ55637.1\|166920_167625_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55661.1\|167768_168323_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AWQ55663.1\|168453_169284_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
AWQ55638.1\|169915_170620_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWQ55639.1\|171665_171842_-\|integrase	integrase	T1S9J3	Salmonella_phage	1.0e-06	68.6
AWQ55640.1\|173047_173851_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
173158:173172	attR	NA	NA	NA	NA
AWQ55641.1\|173850_174687_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AWQ55642.1\|174658_175198_-\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP021165

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP021166

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection