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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020651 Bordetella bronchiseptica strain D755 chromosome, complete genome 10 crisprs csa3,DEDDh,DinG,cas3 2 0 2 0

Results visualization

1. CP020651
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_1 487499-487600 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_2 1003987-1004071 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_3 1529896-1529982 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_5 3124430-3124557 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_6 3248425-3248540 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_7 4108734-4108859 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_8 4397769-4397862 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_9 4533243-4533323 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_10 4676331-4676414 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020651_11 4759352-4759432 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP020651_6 6.1|3248458|50|CP020651|CRISPRCasFinder 3248458-3248507 50 CP020651.1 1486880-1486929 0 1.0
CP020651_6 6.1|3248458|50|CP020651|CRISPRCasFinder 3248458-3248507 50 CP020651.1 3091251-3091300 0 1.0
CP020651_6 6.1|3248458|50|CP020651|CRISPRCasFinder 3248458-3248507 50 CP020651.1 1442262-1442311 1 0.98
CP020651_6 6.1|3248458|50|CP020651|CRISPRCasFinder 3248458-3248507 50 CP020651.1 1442345-1442394 1 0.98
CP020651_9 9.1|4533267|33|CP020651|CRISPRCasFinder 4533267-4533299 33 CP020651.1 3963477-3963509 1 0.97
CP020651_6 6.1|3248458|50|CP020651|CRISPRCasFinder 3248458-3248507 50 CP020651.1 3269363-3269412 2 0.96

1. spacer 6.1|3248458|50|CP020651|CRISPRCasFinder matches to position: 1486880-1486929, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

2. spacer 6.1|3248458|50|CP020651|CRISPRCasFinder matches to position: 3091251-3091300, mismatch: 0, identity: 1.0

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	Protospacer
**************************************************

3. spacer 6.1|3248458|50|CP020651|CRISPRCasFinder matches to position: 1442262-1442311, mismatch: 1, identity: 0.98

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccgagggggct	Protospacer
*****************************************.********

4. spacer 6.1|3248458|50|CP020651|CRISPRCasFinder matches to position: 1442345-1442394, mismatch: 1, identity: 0.98

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgtgcgggcttgctgccccccgagggggct	Protospacer
*****************************************.********

5. spacer 9.1|4533267|33|CP020651|CRISPRCasFinder matches to position: 3963477-3963509, mismatch: 1, identity: 0.97

gcctgcaagatttcatggcatctgcccgtgcgt	CRISPR spacer
gcctgcaagatttcatggcgtctgcccgtgcgt	Protospacer
*******************.*************

6. spacer 6.1|3248458|50|CP020651|CRISPRCasFinder matches to position: 3269363-3269412, mismatch: 2, identity: 0.96

ggcccccacgctgcgcccgctgtgcgggcttgctgccccccaagggggct	CRISPR spacer
ggcccccacgctgcgcccgctgcgcgggcttgctgccccccgagggggct	Protospacer
**********************.******************.********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2308520 : 2316586 9 Moraxella_phage(28.57%) tRNA NA
DBSCAN-SWA_2 3619340 : 3641709 30 Pseudomonas_phage(18.18%) terminase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage