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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029669 Staphylococcus aureus strain AR_0223 chromosome, complete genome 9 crisprs DEDDh,cas3,DinG,WYL,csa3 9 4 12 1
CP029668 Staphylococcus aureus strain AR_0223 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP029669
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_1 214865-214943 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_2 1244133-1244441 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_3 1307145-1307226 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_4 1350413-1350498 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_5 1526350-1526442 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_6 1770601-1770702 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_7 2287329-2287502 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_8 2728266-2728346 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029669_9 2852114-2852204 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029669_3 3.1|1307169|34|CP029669|CRISPRCasFinder 1307169-1307202 34 CP029669.1 729022-729055 0 1.0
CP029669_3 3.1|1307169|34|CP029669|CRISPRCasFinder 1307169-1307202 34 CP029669.1 818214-818247 0 1.0
CP029669_7 7.1|2287382|17|CP029669|PILER-CR 2287382-2287398 17 CP029669.1 1355837-1355853 0 1.0
CP029669_7 7.1|2287382|17|CP029669|PILER-CR 2287382-2287398 17 CP029669.1 1355892-1355908 0 1.0
CP029669_7 7.1|2287382|17|CP029669|PILER-CR 2287382-2287398 17 CP029669.1 1932815-1932831 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 203983-203998 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 204041-204056 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 728994-729009 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 813863-813878 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 818260-818275 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 1026383-1026398 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 1127010-1127025 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 1306872-1306887 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 1809268-1809283 0 1.0
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 2452786-2452801 0 1.0
CP029669_1 1.1|214888|33|CP029669|CRISPRCasFinder 214888-214920 33 CP029669.1 549974-550006 1 0.97
CP029669_1 1.1|214888|33|CP029669|CRISPRCasFinder 214888-214920 33 CP029669.1 818260-818292 1 0.97
CP029669_1 1.1|214888|33|CP029669|CRISPRCasFinder 214888-214920 33 CP029669.1 1026383-1026415 1 0.97
CP029669_1 1.1|214888|33|CP029669|CRISPRCasFinder 214888-214920 33 CP029669.1 1350400-1350432 1 0.97
CP029669_1 1.1|214888|33|CP029669|CRISPRCasFinder 214888-214920 33 CP029669.1 2452769-2452801 1 0.97
CP029669_2 2.2|1244246|26|CP029669|CRT 1244246-1244271 26 CP029669.1 1350387-1350412 1 0.962
CP029669_4 4.1|1350443|26|CP029669|CRISPRCasFinder 1350443-1350468 26 CP029669.1 1387507-1387532 1 0.962
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 371409-371424 1 0.938
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 549991-550006 1 0.938
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 772207-772222 1 0.938
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 1030351-1030366 1 0.938
CP029669_7 7.2|2287452|16|CP029669|PILER-CR 2287452-2287467 16 CP029669.1 2639084-2639099 1 0.938
CP029669_1 1.1|214888|33|CP029669|CRISPRCasFinder 214888-214920 33 CP029669.1 728977-729009 2 0.939
CP029669_2 2.2|1244246|26|CP029669|CRT 1244246-1244271 26 CP029669.1 1809288-1809313 2 0.923
CP029669_2 2.4|1244360|26|CP029669|CRT 1244360-1244385 26 CP029669.1 1387507-1387532 2 0.923
CP029669_2 2.5|1244386|33|CP029669|CRISPRCasFinder 1244386-1244418 33 CP029669.1 1306865-1306897 2 0.939
CP029669_4 4.1|1350443|26|CP029669|CRISPRCasFinder 1350443-1350468 26 CP029669.1 1387451-1387476 2 0.923
CP029669_8 8.1|2728291|31|CP029669|CRISPRCasFinder 2728291-2728321 31 CP029669.1 728981-729011 2 0.935
CP029669_8 8.1|2728291|31|CP029669|CRISPRCasFinder 2728291-2728321 31 CP029669.1 818258-818288 2 0.935
CP029669_8 8.1|2728291|31|CP029669|CRISPRCasFinder 2728291-2728321 31 CP029669.1 1026381-1026411 2 0.935
CP029669_8 8.1|2728291|31|CP029669|CRISPRCasFinder 2728291-2728321 31 CP029669.1 1126997-1127027 2 0.935
CP029669_8 8.1|2728291|31|CP029669|CRISPRCasFinder 2728291-2728321 31 CP029669.1 1350404-1350434 2 0.935
CP029669_8 8.1|2728291|31|CP029669|CRISPRCasFinder 2728291-2728321 31 CP029669.1 1809266-1809296 2 0.935
CP029669_8 8.1|2728291|31|CP029669|CRISPRCasFinder 2728291-2728321 31 CP029669.1 2452773-2452803 2 0.935

1. spacer 3.1|1307169|34|CP029669|CRISPRCasFinder matches to position: 729022-729055, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 3.1|1307169|34|CP029669|CRISPRCasFinder matches to position: 818214-818247, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

3. spacer 7.1|2287382|17|CP029669|PILER-CR matches to position: 1355837-1355853, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

4. spacer 7.1|2287382|17|CP029669|PILER-CR matches to position: 1355892-1355908, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

5. spacer 7.1|2287382|17|CP029669|PILER-CR matches to position: 1932815-1932831, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

6. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 203983-203998, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

7. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 204041-204056, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

8. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 728994-729009, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

9. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 813863-813878, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

10. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 818260-818275, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

11. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 1026383-1026398, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

12. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 1127010-1127025, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

13. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 1306872-1306887, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

14. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 1809268-1809283, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

15. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 2452786-2452801, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

16. spacer 1.1|214888|33|CP029669|CRISPRCasFinder matches to position: 549974-550006, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttactataatg	Protospacer
************************** ******

17. spacer 1.1|214888|33|CP029669|CRISPRCasFinder matches to position: 818260-818292, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

18. spacer 1.1|214888|33|CP029669|CRISPRCasFinder matches to position: 1026383-1026415, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

19. spacer 1.1|214888|33|CP029669|CRISPRCasFinder matches to position: 1350400-1350432, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

20. spacer 1.1|214888|33|CP029669|CRISPRCasFinder matches to position: 2452769-2452801, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

21. spacer 2.2|1244246|26|CP029669|CRT matches to position: 1350387-1350412, mismatch: 1, identity: 0.962

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
***.**********************

22. spacer 4.1|1350443|26|CP029669|CRISPRCasFinder matches to position: 1387507-1387532, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
******************** *****

23. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 371409-371424, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagctttcaataatg	Protospacer
******* ********

24. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 549991-550006, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttactataatg	Protospacer
********* ******

25. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 772207-772222, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

26. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 1030351-1030366, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaaaaatg	Protospacer
*********** ****

27. spacer 7.2|2287452|16|CP029669|PILER-CR matches to position: 2639084-2639099, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

28. spacer 1.1|214888|33|CP029669|CRISPRCasFinder matches to position: 728977-729009, mismatch: 2, identity: 0.939

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
****** *******************.******

29. spacer 2.2|1244246|26|CP029669|CRT matches to position: 1809288-1809313, mismatch: 2, identity: 0.923

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctttgttggggccccg	Protospacer
***.******** *************

30. spacer 2.4|1244360|26|CP029669|CRT matches to position: 1387507-1387532, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** **.*****************

31. spacer 2.5|1244386|33|CP029669|CRISPRCasFinder matches to position: 1306865-1306897, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

32. spacer 4.1|1350443|26|CP029669|CRISPRCasFinder matches to position: 1387451-1387476, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
*************.****** *****

33. spacer 8.1|2728291|31|CP029669|CRISPRCasFinder matches to position: 728981-729011, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcatacaataatgtg	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtg	Protospacer
**.*************** ************

34. spacer 8.1|2728291|31|CP029669|CRISPRCasFinder matches to position: 818258-818288, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcatacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** *************** ************

35. spacer 8.1|2728291|31|CP029669|CRISPRCasFinder matches to position: 1026381-1026411, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcatacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** *************** ************

36. spacer 8.1|2728291|31|CP029669|CRISPRCasFinder matches to position: 1126997-1127027, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcatacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** *************** ************

37. spacer 8.1|2728291|31|CP029669|CRISPRCasFinder matches to position: 1350404-1350434, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcatacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** *************** ************

38. spacer 8.1|2728291|31|CP029669|CRISPRCasFinder matches to position: 1809266-1809296, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcatacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** *************** ************

39. spacer 8.1|2728291|31|CP029669|CRISPRCasFinder matches to position: 2452773-2452803, mismatch: 2, identity: 0.935

aggtgacgaaaagtcagcatacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
** *************** ************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029669_2 2.1|1244163|53|CP029669|CRT 1244163-1244215 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
CP029669_2 2.2|1244246|26|CP029669|CRT 1244246-1244271 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
CP029669_4 4.1|1350443|26|CP029669|CRISPRCasFinder 1350443-1350468 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
CP029669_4 4.1|1350443|26|CP029669|CRISPRCasFinder 1350443-1350468 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
CP029669_4 4.1|1350443|26|CP029669|CRISPRCasFinder 1350443-1350468 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
CP029669_1 1.1|214888|33|CP029669|CRISPRCasFinder 214888-214920 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 2.1|1244163|53|CP029669|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ttgggagtgggacagaaatgatattttcgcaaaatttatttcgtcgtcccacc	CRISPR spacer
aagggagtgggacagaaatgatagtttctcaaaatttatttcgtcgtcccacc	Protospacer
  ********************* **** ************************

2. spacer 2.2|1244246|26|CP029669|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 4.1|1350443|26|CP029669|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

4. spacer 4.1|1350443|26|CP029669|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
gtaggcccagacacagaagctggcgg	Protospacer
  .***** .****************

5. spacer 4.1|1350443|26|CP029669|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
tcagggccaaacacagaagctggcgg	Protospacer
. .** ** *****************

6. spacer 1.1|214888|33|CP029669|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
aggtgcttgacgaaaactcaccttacgataaaa	Protospacer
 .* . .********* *** ********** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 101780 : 160019 76 Staphylococcus_phage(97.1%) portal,head,holin,capsid,terminase,protease,integrase,tail attL 115647:115664|attR 140578:140595
DBSCAN-SWA_2 249398 : 366491 106 Staphylococcus_phage(86.96%) transposase,tRNA,protease,bacteriocin NA
DBSCAN-SWA_3 491952 : 500995 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 570131 : 578443 7 Caulobacter_phage(16.67%) NA NA
DBSCAN-SWA_5 668910 : 761180 61 Staphylococcus_phage(20.0%) tRNA,head,transposase,protease,lysis NA
DBSCAN-SWA_6 854315 : 860359 10 Staphylococcus_phage(66.67%) head NA
DBSCAN-SWA_7 1117047 : 1125520 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_8 1289834 : 1305663 21 Staphylococcus_phage(64.71%) capsid,terminase,integrase attL 1289155:1289171|attR 1303111:1303127
DBSCAN-SWA_9 1384317 : 1399048 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_10 1411020 : 1418840 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_11 1830325 : 1871534 69 Staphylococcus_phage(88.24%) holin,head,capsid,integrase,terminase,protease,portal,tail attL 1855126:1855141|attR 1875585:1875600
DBSCAN-SWA_12 2166530 : 2210045 49 Staphylococcus_phage(50.0%) transposase,integrase attL 2168974:2169033|attR 2210046:2210105
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
CP029669.1|AWR11644.1|1384317_1385079_-|ABC-transporter-family-protein 1384317_1385079_- 253 aa aa NA NA NA 1384317-1399048 yes