CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029675	Staphylococcus aureus strain AR_0219 chromosome, complete genome	9 crisprs	cas3,DEDDh,DinG,csa3,RT,WYL	6	1	12	0
CP029674	Staphylococcus aureus strain AR_0219 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029675_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_1

187870-187954

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029675_1

>merge|CP029675|1|187870-187954|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>CP029675|1|1|187870-187954|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR01741.1\|186761_187721_+\|cation-diffusion-facilitator-transporter-family-protein	unknown	unknown	gnl\|CDD\|224151
CP029675.1\|AWR02357.1\|183485_183812_-\|antibiotic-biosynthesis-monooxygenase-family-protein	unknown	unknown	gnl\|CDD\|183968
CP029675.1\|AWR02818.1\|193528_194554_+\|formate-dehydrogenase,-mitochondrial	unknown	unknown	gnl\|CDD\|181041
CP029675.1\|AWR01495.1\|188397_188910_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379428
CP029675.1\|AWR03135.1\|179438_179996_+\|bacterial-sugar-transferase-family-protein	unknown	unknown	gnl\|CDD\|225059
CP029675.1\|AWR02008.1\|191744_192779_+\|putative-butyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
CP029675.1\|AWR02894.1\|190973_191735_+\|binding-protein-dependent-transport-system-inner-membrane-component-family-protein	unknown	unknown	gnl\|CDD\|223673
CP029675.1\|AWR02240.1\|193223_193355_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227896
CP029675.1\|AWR03805.1\|188015_188219_-\|hypothetical-protein	unknown	unknown	unknown
CP029675.1\|AWR02641.1\|179995_180883_+\|polysaccharide-biosynthesis-family-protein	unknown	unknown	gnl\|CDD\|187543
CP029675.1\|AWR03602.1\|178618_179428_+\|glycosyl-transferases-group-1-family-protein	unknown	unknown	gnl\|CDD\|340825
CP029675.1\|AWR01911.1\|183818_184202_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377291
CP029675.1\|AWR02198.1\|189251_189992_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224041
CP029675.1\|AWR03210.1\|182275_183421_+\|UDP-N-acetylglucosamine-2-epimerase	unknown	unknown	gnl\|CDD\|223458
CP029675.1\|AWR03645.1\|194972_196190_+\|major-Facilitator-Superfamily-protein	unknown	unknown	gnl\|CDD\|340887
CP029675.1\|AWR03124.1\|196618_203812_+\|thioester-reductase-domain-protein	unknown	unknown	gnl\|CDD\|237108
CP029675.1\|AWR02859.1\|177016_178222_+\|polysaccharide-biosynthesis-family-protein	unknown	unknown	unknown
CP029675.1\|AWR03023.1\|184627_186115_+\|putative-aldehyde-dehydrogenase-AldA	unknown	unknown	gnl\|CDD\|143435
CP029675.1\|AWR01292.1\|180936_182199_+\|cap5O	unknown	unknown	gnl\|CDD\|223749
CP029675.1\|AWR03578.1\|190005_190977_+\|NMT1-like-family-protein	unknown	unknown	gnl\|CDD\|270271

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR01741.1\|186761_187721_+\|cation-diffusion-facilitator-transporter-family-protein	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	4.11026e-108
CP029675.1\|AWR02357.1\|183485_183812_-\|antibiotic-biosynthesis-monooxygenase-family-protein	gnl\|CDD\|183968	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI.	1.40112e-64
CP029675.1\|AWR02818.1\|193528_194554_+\|formate-dehydrogenase,-mitochondrial	gnl\|CDD\|181041	PRK07574, PRK07574, NAD-dependent formate dehydrogenase.	0
CP029675.1\|AWR01495.1\|188397_188910_+\|hypothetical-protein	gnl\|CDD\|379428	pfam14026, DUF4242, Protein of unknown function (DUF4242). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 90 and 170 amino acids in length. There is a single completely conserved residue C that may be functionally important.	2.56603e-26
CP029675.1\|AWR03135.1\|179438_179996_+\|bacterial-sugar-transferase-family-protein	gnl\|CDD\|225059	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane].	3.08096e-87
CP029675.1\|AWR02008.1\|191744_192779_+\|putative-butyryl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	2.63983e-20
CP029675.1\|AWR02894.1\|190973_191735_+\|binding-protein-dependent-transport-system-inner-membrane-component-family-protein	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.22607e-73
CP029675.1\|AWR02240.1\|193223_193355_+\|hypothetical-protein	gnl\|CDD\|227896	COG5609, COG5609, Uncharacterized conserved protein [Function unknown].	5.21477e-11
CP029675.1\|AWR02641.1\|179995_180883_+\|polysaccharide-biosynthesis-family-protein	gnl\|CDD\|187543	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.93098e-117
CP029675.1\|AWR03602.1\|178618_179428_+\|glycosyl-transferases-group-1-family-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	6.93321e-46
CP029675.1\|AWR01911.1\|183818_184202_-\|hypothetical-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	5.80598e-41
CP029675.1\|AWR02198.1\|189251_189992_+\|ABC-transporter-family-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.18703e-112
CP029675.1\|AWR03210.1\|182275_183421_+\|UDP-N-acetylglucosamine-2-epimerase	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	0
CP029675.1\|AWR03645.1\|194972_196190_+\|major-Facilitator-Superfamily-protein	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.85509e-70
CP029675.1\|AWR03124.1\|196618_203812_+\|thioester-reductase-domain-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP029675.1\|AWR03023.1\|184627_186115_+\|putative-aldehyde-dehydrogenase-AldA	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
CP029675.1\|AWR01292.1\|180936_182199_+\|cap5O	gnl\|CDD\|223749	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane].	0
CP029675.1\|AWR03578.1\|190005_190977_+\|NMT1-like-family-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.75927e-52

>CP029675.1|AWR01741.1|186761_187721_+|cation-diffusion-facilitator-transporter-family-protein
MNGKKANTINRYKYFHHVNHQKIQQSSKKTLWASLIITLLFTVIEFVGGLVSNSLALLSDSFHMLSDVLALGLSMLAIYFASKKPTARYTFGYLRFEILVAFLNGLALIVISIWILYEAIVRIIYPQPIESGIMFMIASIGLLVNIILTIILVRSLKQEDNINIQSALWHFMGDLLNSIGVIVAVVLIYFTGWRIIDPIISIVISLIILRGGYKITRNAWLILMESVPQHLDTDQIMADIKNIDGILDVHEFHLWSITTEHYSLSAHVVLDKKYEGDDYQAIDQVSSLLKEKYGIAHSTLQIENLQLNPLDEPYFDKLT
>CP029675.1|AWR03023.1|184627_186115_+|putative-aldehyde-dehydrogenase-AldA
MAVNVRDYIAENYGLFINGEFVKGSSDETIEVTNPATGETLSHITRAKDKDVDHAVKVAQEAFESWSLTSKSERAQMLRDIGDKLMAQKDKIAMIETLNNGKPIRETTAIDIPFAARHFHYFASVIETEEGTVNDIDKDTMSIVRHEPIGVVGAVVAWNFPMLLAAWKIAPAIAAGNTIVIQPSSSTPLSLLEVAKIFQEVLPKGVVNILTGKGSESGNAIFNHDGVDKLSFTGSTDVGYQVAEAAAKHLVPATLELGGKSANIILDDANLDLAVEGIQLGILFNQGEVCSAGSRLLVHEKIYDQLVPRLQEAFSNIKVGDPQDEATQMGSQTGKDQLDKIQSYIDAAKESDAQILAGGHRLTENGLDKGFFFEPTLIAVPDNHHKLAQEEIFGPVLTVIKVKDDQEAIDIANDSEYGLAGGVFSQNITRALNIAKAVRTGRIWINTYNQVPEGAPFGGYKKSGIGRETYKGALSNYQQVKNIYIDTSNALKGLY
>CP029675.1|AWR01911.1|183818_184202_-|hypothetical-protein
MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVKTLPKSNHKIEE
>CP029675.1|AWR02357.1|183485_183812_-|antibiotic-biosynthesis-monooxygenase-family-protein
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
>CP029675.1|AWR03210.1|182275_183421_+|UDP-N-acetylglucosamine-2-epimerase
MKKIMVIFGTRPEAIKMAPLVKEIDHNGNFEANIVITAQHRDMLDSVLSIFDIQADHDLNIMQDQQTLADLTANALAKLDSIINEEQPDMILVHGDTTTTFVGSLAAFYHQIPVGHVEAGLRTHQKYSPFPEELNRVMVSNIAELNFAPTVIAAKNLLFENKDKERIFITGNTVIDALSTTVQNDFVSTIINKHKGKKVILLTAHRRENIGEPMHQIFKAVRDLADEYKDVVFIYPMHRNPKVRAIAEKYLSGRNRIELIEPLDAIEFHNFTNQSYLVLTDSGGIQEEAPTFGKPVLVLRNHTERPEGVEAGTSRVIGTDYDNIVRNVKQLIEDDEAYQRMSQANNPYGDGQASRRICEAIEYYFGLRSDKPDEFVPLRHK
>CP029675.1|AWR01292.1|180936_182199_+|cap5O
MKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQSGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLEKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDICLVHCPERVLPGKILEELVHNNRIIGGVTKACIEAGKYVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPRVNIHQPGPGVGGHCLAVDPYFIIAKDPENAKLIQTGREINNSMPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELDFVEHDMSHAVKDASLVLILSDHSEFKNLSDSHFDKMKHKVIFDTKNVVKSSFEDVSYYNYGNIFNFIDK
>CP029675.1|AWR02641.1|179995_180883_+|polysaccharide-biosynthesis-family-protein
MRKNILITGVHGYIGNALKDKLIEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLTYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA
>CP029675.1|AWR03135.1|179438_179996_+|bacterial-sugar-transferase-family-protein
MKRLFDVVSSIYGLVVLSPILLITALLIKMESPGPAIFKQKRPTINNELFNIYKFRSMKIDTPNVATDLMDSTSYITKTGKVIRKTSIDELPQLLNVLKGEMSIVGPRPALYNQYELIEKRTKANVHTIRPGVTGLAQVMGRDDITDDQKVAYDHYYLTHQSMMLDMYIIYKTIKNIVTSEGVHH
>CP029675.1|AWR03602.1|178618_179428_+|glycosyl-transferases-group-1-family-protein
MYDIAPDNAIKTGATRPGSMIDKLMRYINRHVYKNAENVIVLGTEMKNYLLNHQISKNADNIHVIPNWYDMRQLQDNRIYNDTFKAYREQYDKILLYSGNMGQLQDMETLISFLKLNKDQPQTLTILCGHGKKFADVKTAIEDHRIENVKMFEFLTGTDYADVLKIADVCIASLIKEGVGLGVPSKNYGYLAAKKPLVLIMDKQSDIVQHVEQYDAGIQIDNGDAHAIYNFINTHSSKELHEMGERAHQLFKDKYTREINTMKYYNLLK
>CP029675.1|AWR02859.1|177016_178222_+|polysaccharide-biosynthesis-family-protein
MVKKVFIMDSVKTIIGTLLIALGLQFLAYPIINQRVGNEAFGSILTIYTIITITSVVLGNTLNNIRLINMNLYKSNHYYWKFVSILLISILIESIALIIVFLYFFNLNTIDIIFLILLNILMCLRIYLNVFFRMTLKYNQILYIALIQFLGLLIGLFLYYLIQNWIVCFITSELFATIYTLVKLRGLTIGEYQSEDNNVVKDYVMLLSTNSLNNLNLYLDRLILLPIIGGTAVTISFLSTFIGKMLATFLYPINNVVLSYISVNESDNIKKQYLKTNLFAIAALCLVMIICYPITLIIVSLLYNIDSSLYSKFIILGNIGVLFNAVSIMIQTLNTKHASITLQANYMTLHTITFIFITILMTIAFGLNGFFWTTLFSNIIKYVILNIIGLKSKFINKKDVD
>CP029675.1|AWR03805.1|188015_188219_-|hypothetical-protein
MDKESVVASLARNKKIAVETMAGQRYIIERILHTNDEKHIHILKPKDVVLDVDSIKEIDENHLNDAT
>CP029675.1|AWR01495.1|188397_188910_+|hypothetical-protein
MTLFLLEANNLDFASTKEELEAKAASLSTKTIPTLIEVQATENLTHGYFIVEANDEAEAKQFLTEADISIQLVKEVRLVGKDLDEVKNGDAHVDYLVTWNIPEGITMDQYLARKKKNSVHYEEVPEVEFKRTYVCEDMSKCICLYNAPDEEAVRRARKAVDTPIDGIEKL
>CP029675.1|AWR02198.1|189251_189992_+|ABC-transporter-family-protein
MIKIQQLQHHFGSHKVIHNFNLDISKGEIVTFIGKSGCGKSTLLNVIGGFIHPSSGRVIIDNEIKQQPSPDCLMLFQHHNLLPWKTINDNIRIGFQQKISDEEINAQLKLVDLEDRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
>CP029675.1|AWR03578.1|190005_190977_+|NMT1-like-family-protein
MKRLSIIVIIGIFIITGCDWQRTSKEPSKNAQNQQVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLNEFNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEMSPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSGYQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS
>CP029675.1|AWR02894.1|190973_191735_+|binding-protein-dependent-transport-system-inner-membrane-component-family-protein
MTRPTNNKFILPIITFIIFLGIWEMVIIIGHYQPVLLPGPALVGKSIWTFIVTGEIFQHLAISLWRFVAGFVVALLVAIPLGFLLGRNRWLYNAIEPLFQLIRPISPIAWAPFVVLWFGIGSLPAIAIIFIAAFFPIVFNTIKGVRDIEPQYLKIAANLNLTGWSLYRNILFPGAFKQIMAGIHMAVGTSWIFLVSGEMIGAQSGLGFLIVDARNMLNLEDVLAAIFFIGLFGFIIDRFISYIEQFILRRFGE
>CP029675.1|AWR02008.1|191744_192779_+|putative-butyryl-CoA-dehydrogenase
MMTLETLIKEQLDPHLVEVDEGTYYPRTFIQQLFVDGYFGEAALRKNAEVIEAVSQSCLTTGFCLWCQLAFSTYLENATQPHLNNDLQQQLLSGEILGATGLSNPMKSFNDLEKLNLEHTYVDGQLVVSGRMPAVSNIQEDHYFGAISKHESSDEFVMFILRANQDGITLVEKTNFLGVNGSATYQITLNQVVVPQSQIITHDAKQFAATIRPQFIAYQIPIGLGSIKSSLELIDAFSNAQNGINQYLEYDVEAFKKRYRQLREEYYAILDDGNLTSHLSELISLKKDIGYLLLDVNQASVVNGGSRAYTPYSPQVRKLKEGFFFAALTPTLRHLGKLEAELKG
>CP029675.1|AWR02240.1|193223_193355_+|hypothetical-protein
MYKEIDVNEMESLVGAKFVKLFTDIDLNDDEVISIFVFDKSIE
>CP029675.1|AWR02818.1|193528_194554_+|formate-dehydrogenase,-mitochondrial
MKIVALFPEAVEGQENQLLNTKKAIGLKTFLEERGHEFIILADNGEDLDKHLPDMDVIISAPFYPAYMTRERIEKAPNLKLAITAGVGSDHVDLAAASEHNIGVVEVTGSNTVSVAEHAVMDLLILLRNYEEGHRQSVEGEWNLSQVGNHAHELQHKTIGIFGFGRIGQLVAERLAPFNVTLQHYDPINQQDHKLSKFVSFDELVSSSDAITIHAPLTPETDNLFDKDVLSRMKKHSYLVNTARGKIVNRDALVEALASEHLQGYAGDVWYPQPAPADHPWRTMPRNAMTVHYSGMTLEAQKRIEDGVKDILERFFNHEPFQDKDIIVASGRIASKSYTAK
>CP029675.1|AWR03645.1|194972_196190_+|major-Facilitator-Superfamily-protein
MISNFLQLIITTAFIPFIALYLTDMLSQSIVGIYLVGLVVLKFPLSIISGYLIEIFPKKLLVLIYQATMVIMLVFMGVFGSHQLWQIIGFCVAYAIFTIVWGLQFPVMDTLIMDAITEDVEHYIYKISYWMTNLSVAIGALLGGLMYGYSMLLLFLIAACIFLIVLFILYIWLPQDRNQVKQSDDKRHASRYQKLQIMNIFRSYKLVLKDRNYMLLISGFSIIMMGEFSISSYIAIRLKDQFETISIGSYDITGAKMLAILLMINTVVVILLTYSISKVVLKIDFKKALITGLLIYIVGYSGLTYLNQFGLLVVFMIIATVGEIIYSPIVSEQRFKIIPKAKRGTYSAVNALGIHFSETLARLGIVLGVFLTSLQMGLYMFIVLTIGASMLVAGVFGGQKQVNTN
>CP029675.1|AWR03124.1|196618_203812_+|thioester-reductase-domain-protein
MKEGLFMIMGNLRFQQEYFRIYKNNTESTTHRNAYWVKLAKNVEATKMMYALSTIVQQHASIRHFFDVTTDDNLTMILHEFLPFIEIKQVPSSSANYDLEAFFKQELSTYHFNDSPLFKVKLFQFADAAYILLDFHVSIFDDSQIDIFLDDLCNAYRGNTVINNTRQHAHINRNDDKDNQDASHIALDSNYFRLENNSDIHIDSYFPIKHPFEQALYQTYLIDDMTSIDMASLAVSVYLANHIMSQQHDVTLGIHVPSHLPNDLHGNIVPLTLTIDAKDVCQRFTTDFNKCVLQNMSQLQCAKSSLSLETIFHCYHHMMSCCNDVIEDVHQIHDAHTSLADIEIFPHQHGFKIIYNSAAYDLLSIETLSDLVRNIYLQITEENGNKRTTVDELNLMTERDIQLYDDINLSLPEIDDAQTVVTLFEQQVEATPNHVAVQFDGVFITYQTLNARANDLAHRLRNQYGVEPNDRVAVIAEKSIEMIIAMIGVLKAGGAYVPIDPNYPSDRQEYILKDATPKVVITYQALYENGKQNINHIDLNKIAWKNIDNLSKCNTLEDHAYVIYTSGTTGNPKGTLIPHRGIVRLVHRNHYVPLNEETTILLSGTIAFDAATFEIYGALLNGGKLIVAKKEQLLNPIAVEQLINENDVNTMWLTSSLFNQIASERIEVLVPLKYLLIGGEVLNAKWVDLLNQKPKHPQIINGYGPTENTTFTTTYNIPNKVPNRIPIGKPILGTHVYIMQGERRCGVGIPGELCTSGFGLAAGYLNQPELTADKFIKDSNINQLMYRSGDIVRLLPDGNIDYLYRKDKQVKIRGFRIELSEVEHALERIQGINKAVVIVQNHDQDQYIVAYYEAMHTLSHNKIKSQLRMTLPEYMIPVNFMHIEQIPITINGKLDKKALPIMDYVDTDAYVAPSTDTEHLLCQIFADILHVNQVGIHDNFFELGGHSLKATLVVNRIEASTGKRLQIGDLLQKPTVFELAQAIAKVQEQNYEVIPEAIVKDDYVLSSAQKRMYLLWKSNHKDTVYNVPFLWRLSSGLNVAQLQQAVQHLIARHEILRTQYIVVDDEVRQRIVADVVADFEEVNTHFTDEQEIMRQFVAPFNLEKPSQIRVRYIRSPLHAYLFIDTHHIINDGMSNIQLMNDLNALYQHKLLLPLKLQYKDYSEWMSHRDMTKHRQYWLSQFKDEVPILSLPTDYVRPNIKTTNGAMMSFTMNQQMRQLLQKYVEKHQITDFMFFMSVVMTLLSRYARKDDVVVGSVMSARMHKGTEQMLGMFANTLVYRGQPSPDKMWTQFLQEVKEMSLEAYEHQEYPFECLVNDLDQSHDASRNPLFDVMLVLQNNETNHAHFGHSKLTHIQPKSVTAKFDLSFIIEEDRDDYTINIEYNTDLYHSETVRHMGNQCMIMIDYILKHQDTLQICDIPNGTEELLNWVNTHVNDRMLNVPGNKSIISYFNEVVSRQGNHVALVMNDLTMTYETLRNYVDAIAHMLLSNGVGNGQRVALFTERSFEMIAAMLATVKVGASYIPIDIDFPNKRQGAILEDAKVTAVMSYGVEIETTLPVIQLENAKGFVESKENEQYDDLHGNQLENTAMLDNEMYAIYTSGTTGMPKGVAIRQRNLLNLVHAWSTELQLGDNEVFLQHANIVFDASVMEIYCCLLNGHTLVIPDREERVNPEQLQQLINKHRVTVASIPLQMCSIMEDFYIEKLITGGATSTASFVKYIEKHCGTYFNAYGPSESTVITSYWSHHCGDLIPETIPIGKPLSNIQVYIMSDGLLCGIGMPGELCIAGDSLAIGYINRPELMADKWQNNPFGKGKLYHSGDLARYTSDGQIEFLGRIDKQVKVNGYRIELDEIENVILAIRGISDCVVTVSHFDTHDILNAYYVGEQQVEQDLKQYLNDQLPKYMIPKTITHIDCMPLTTNDKVDTTRLPNPSPIQQSNKVYSEPSNEIEQTFVDVFGEVLKQNDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNYMYQNQQSLVALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKEIELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNK

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Crispr_ID: CP029675_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_2

427653-427754

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029675_2

>merge|CP029675|2|427653-427754|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP029675|2|2|427653-427754|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR02066.1\|421990_422560_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP029675.1\|AWR01737.1\|420451_421975_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP029675.1\|AWR02637.1\|423886_425275_-\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP029675.1\|AWR01346.1\|418728_419112_-\|putative-membrane-protein	unknown	unknown	unknown
CP029675.1\|AWR01339.1\|423051_423807_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP029675.1\|AWR01773.1\|436773_436974_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371495
CP029675.1\|AWR02800.1\|427187_427439_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225995
CP029675.1\|AWR02523.1\|435553_436747_-\|phage-integrase-family-protein	unknown	unknown	gnl\|CDD\|271189
CP029675.1\|AWR01406.1\|432453_433920_+\|inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP029675.1\|AWR02449.1\|437471_437702_-\|helix-turn-helix-domain-protein	unknown	unknown	gnl\|CDD\|378900
CP029675.1\|AWR01175.1\|429649_430057_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP029675.1\|AWR02692.1\|426978_427131_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225995
CP029675.1\|AWR02275.1\|431147_432416_+\|xanthine-permease-family-protein	unknown	unknown	gnl\|CDD\|274468
CP029675.1\|AWR02661.1\|426121_426979_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225995
CP029675.1\|AWR02438.1\|420080_420272_-\|hypothetical-protein	unknown	unknown	unknown
CP029675.1\|AWR02397.1\|419381_420008_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP029675.1\|AWR03486.1\|427770_428727_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP029675.1\|AWR03304.1\|433944_435486_+\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614
CP029675.1\|AWR01133.1\|430569_431148_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP029675.1\|AWR02658.1\|428844_429507_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR02066.1\|421990_422560_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP029675.1\|AWR01737.1\|420451_421975_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP029675.1\|AWR02637.1\|423886_425275_-\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP029675.1\|AWR01339.1\|423051_423807_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP029675.1\|AWR01773.1\|436773_436974_-\|hypothetical-protein	gnl\|CDD\|371495	pfam11372, DUF3173, Domain of unknown function (DUF3173). This family of proteins with unknown function appears to be restricted to Firmicutes. These proteins appear to be distantly related to HHH domains and are therefore likely to be DNA-binding. Genomic environment-visualisation confirms the likely function as being DNA-binding, as this short protein lies very closely between an integrase and a replication protein (http://www.microbesonline.org/).	2.02242e-22
CP029675.1\|AWR02800.1\|427187_427439_+\|transposase-family-protein	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.14115e-16
CP029675.1\|AWR02523.1\|435553_436747_-\|phage-integrase-family-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.36769e-47
CP029675.1\|AWR01406.1\|432453_433920_+\|inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP029675.1\|AWR01175.1\|429649_430057_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP029675.1\|AWR02692.1\|426978_427131_+\|transposase-family-protein	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00120817
CP029675.1\|AWR03304.1\|433944_435486_+\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP029675.1\|AWR02661.1\|426121_426979_+\|transposase-family-protein	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.67656e-72
CP029675.1\|AWR02275.1\|431147_432416_+\|xanthine-permease-family-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.06593e-169
CP029675.1\|AWR02397.1\|419381_420008_-\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP029675.1\|AWR03486.1\|427770_428727_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00265416
CP029675.1\|AWR02449.1\|437471_437702_-\|helix-turn-helix-domain-protein	gnl\|CDD\|378900	pfam12645, HTH_16, Helix-turn-helix domain. This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.	2.04673e-25
CP029675.1\|AWR01133.1\|430569_431148_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119

>CP029675.1|AWR02800.1|427187_427439_+|transposase-family-protein
MSKGVWKVVKYYRKHQRMLRNTIYYPAFNNGAIEGINNKIKLIKRISFGYRNFNNFKARIMMIFSLYKGEKKKTTKPNNGLAA
>CP029675.1|AWR02692.1|426978_427131_+|transposase-family-protein
MDTSKTIFSKYRWNKSFKAYKRSSDIVEFMLSKDDILRRSYELVQGLRKI
>CP029675.1|AWR02661.1|426121_426979_+|transposase-family-protein
MCNDTLELLRIKDENIKYINQEIDVIIKGKKATVVNAVLTYKPSACYCCGVKNEGQIHKHGKRVSRITLLKTQGYNTYLNLAKQRFKCLECNGTFTAKTSIVDESCFISRCVTQKVIEEATKVKTEIDTAEDNCISPSTVSRIRTKAANSLRIKPFNCLPEHIAMDEFKSVKNVTGSMSFIFIDNDTHDVIDILENRTTRFLRAYFERFDLKNRQQVKTVTIDMYEPYVRLFRDLFPNAAIIFDRFHIVQHLNRELNKYRVQVMNEYRNKKDLIIQFLRITGKFY
>CP029675.1|AWR02637.1|423886_425275_-|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP029675.1|AWR01339.1|423051_423807_+|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP029675.1|AWR02066.1|421990_422560_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP029675.1|AWR01737.1|420451_421975_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP029675.1|AWR02438.1|420080_420272_-|hypothetical-protein
MNEIIMLLRTIPTSKLIQPIMQLFIDNAILNIVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP029675.1|AWR02397.1|419381_420008_-|hypothetical-protein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP029675.1|AWR01346.1|418728_419112_-|putative-membrane-protein
MKVRITFIILAILSTIVCLFLAAMYPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP029675.1|AWR03486.1|427770_428727_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP029675.1|AWR02658.1|428844_429507_-|hypothetical-protein
MEFKTIQSIKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP029675.1|AWR01175.1|429649_430057_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP029675.1|AWR01133.1|430569_431148_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP029675.1|AWR02275.1|431147_432416_+|xanthine-permease-family-protein
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFILAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP029675.1|AWR01406.1|432453_433920_+|inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP029675.1|AWR03304.1|433944_435486_+|GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP029675.1|AWR02523.1|435553_436747_-|phage-integrase-family-protein
MVKDPIKKAKNGTYYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLLMKPEELSENKDKMTFKHYIFEIFLPWYKTQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKCKSSYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSNYRFVEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIERYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETTLGTYGHLYPNSNFEVANKLNGAISFKEAKQNYDTSPKNQFTVDYLRNKEMKKVQ
>CP029675.1|AWR01773.1|436773_436974_-|hypothetical-protein
MITVTKKDLVELGYGTSFSADIIKKAKELMITKGHIYYQSRKLDRVPREAVEEILGIRFSNENRSE
>CP029675.1|AWR02449.1|437471_437702_-|helix-turn-helix-domain-protein
MKTAYPRVPFPLIVKATDGDVEAINQIVKHYRGYTSKRSLRRMTDEYGNSHMVIDETLRGRMETKLISKILSFEIK

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Crispr_ID: CP029675_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_3

841777-841855

Unclear

Consensus_repeat	Method
TGTAGAATTTCTTTTCGAAATTCT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029675_3

>merge|CP029675|3|841777-841855|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCT

>CP029675|3|3|841777-841855|CRISPRCasFinder
TGTAGAATTTCTTTTCGAAATTCT	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC
TGTAGAATTTCTTTTCGAAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR01765.1\|852129_853032_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029675.1\|AWR02028.1\|836610_838596_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029675.1\|AWR02156.1\|847777_848689_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029675.1\|AWR01222.1\|835458_836109_+\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029675.1\|AWR03130.1\|838603_841450_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029675.1\|AWR03274.1\|844391_845831_+\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276808
CP029675.1\|AWR01273.1\|845897_846833_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029675.1\|AWR02781.1\|834478_835285_+\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451
CP029675.1\|AWR03548.1\|849791_850736_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029675.1\|AWR03796.1\|843898_844384_+\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100053
CP029675.1\|AWR01944.1\|836105_836342_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP029675.1\|AWR03636.1\|829094_829667_+\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP029675.1\|AWR02647.1\|842113_843046_+\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029675.1\|AWR03190.1\|848685_849681_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029675.1\|AWR02190.1\|851299_851887_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029675.1\|AWR01189.1\|827413_828367_+\|DEAD/DEAH-box-helicase-family-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
CP029675.1\|AWR02837.1\|843051_843891_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029675.1\|AWR01592.1\|833044_834037_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP029675.1\|AWR01843.1\|828359_829034_+\|putative-amidophosphoribosyltransferase,-ComFC	unknown	unknown	gnl\|CDD\|223970
CP029675.1\|AWR03459.1\|830080_832612_+\|preprotein-translocase,-SecA-subunit	unknown	unknown	gnl\|CDD\|237259

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR01765.1\|852129_853032_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP029675.1\|AWR02028.1\|836610_838596_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029675.1\|AWR02156.1\|847777_848689_+\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029675.1\|AWR01222.1\|835458_836109_+\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029675.1\|AWR03130.1\|838603_841450_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029675.1\|AWR03274.1\|844391_845831_+\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP029675.1\|AWR01273.1\|845897_846833_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029675.1\|AWR02781.1\|834478_835285_+\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.87495e-42
CP029675.1\|AWR03548.1\|849791_850736_+\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029675.1\|AWR03796.1\|843898_844384_+\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP029675.1\|AWR01944.1\|836105_836342_+\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP029675.1\|AWR03636.1\|829094_829667_+\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP029675.1\|AWR02647.1\|842113_843046_+\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029675.1\|AWR03190.1\|848685_849681_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029675.1\|AWR02190.1\|851299_851887_+\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029675.1\|AWR01189.1\|827413_828367_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.05277e-176
CP029675.1\|AWR02837.1\|843051_843891_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP029675.1\|AWR01592.1\|833044_834037_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP029675.1\|AWR01843.1\|828359_829034_+\|putative-amidophosphoribosyltransferase,-ComFC	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.0058e-51
CP029675.1\|AWR03459.1\|830080_832612_+\|preprotein-translocase,-SecA-subunit	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0

>CP029675.1|AWR03130.1|838603_841450_+|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDELTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029675.1|AWR02028.1|836610_838596_+|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029675.1|AWR01944.1|836105_836342_+|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029675.1|AWR01222.1|835458_836109_+|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029675.1|AWR02781.1|834478_835285_+|staphyloxanthin-biosynthesis-protein,-putative
MLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP029675.1|AWR01592.1|833044_834037_+|peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP029675.1|AWR03459.1|830080_832612_+|preprotein-translocase,-SecA-subunit
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP029675.1|AWR03636.1|829094_829667_+|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP029675.1|AWR01843.1|828359_829034_+|putative-amidophosphoribosyltransferase,-ComFC
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP029675.1|AWR01189.1|827413_828367_+|DEAD/DEAH-box-helicase-family-protein
MRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE
>CP029675.1|AWR02647.1|842113_843046_+|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029675.1|AWR02837.1|843051_843891_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029675.1|AWR03796.1|843898_844384_+|bacterial-transferase-hexapeptide-family-protein
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029675.1|AWR03274.1|844391_845831_+|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029675.1|AWR01273.1|845897_846833_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029675.1|AWR02156.1|847777_848689_+|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029675.1|AWR03190.1|848685_849681_+|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029675.1|AWR03548.1|849791_850736_+|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029675.1|AWR02190.1|851299_851887_+|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029675.1|AWR01765.1|852129_853032_-|NAD-dependent-epimerase/dehydratase-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029675_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_4

905255-905336

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029675_4

>merge|CP029675|4|905255-905336|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGAGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP029675|4|4|905255-905336|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGAGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR02938.1\|901246_901963_+\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP029675.1\|AWR03371.1\|899783_900278_-\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|372596
CP029675.1\|AWR03558.1\|908603_909425_+\|NLPA-lipofamily-protein	unknown	unknown	gnl\|CDD\|224381
CP029675.1\|AWR01149.1\|909778_909973_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP029675.1\|AWR03080.1\|900676_901099_-\|peroxiredoxin,-Ohr-subfamily-protein	unknown	unknown	gnl\|CDD\|274649
CP029675.1\|AWR02867.1\|902045_902585_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
CP029675.1\|AWR01952.1\|907932_908586_+\|methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP029675.1\|AWR02180.1\|899011_899629_-\|lysE-type-translocator-family-protein	unknown	unknown	gnl\|CDD\|224198
CP029675.1\|AWR03646.1\|912244_913552_+\|feS-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP029675.1\|AWR02181.1\|906872_907898_+\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP029675.1\|AWR02170.1\|904157_904271_+\|hypothetical-protein	unknown	unknown	unknown
CP029675.1\|AWR03192.1\|911385_912147_+\|feS-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP029675.1\|AWR01279.1\|905947_906334_+\|toprim-domain-protein	unknown	unknown	gnl\|CDD\|224572
CP029675.1\|AWR03537.1\|903713_904094_+\|glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP029675.1\|AWR02990.1\|902735_903056_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029675.1\|AWR03415.1\|910206_911058_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP029675.1\|AWR02064.1\|903199_903556_+\|transcriptional-regulator,-Spx/MgsR-family-protein	unknown	unknown	gnl\|CDD\|239334
CP029675.1\|AWR03162.1\|906326_906623_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029675.1\|AWR02472.1\|913666_914908_+\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP029675.1\|AWR03421.1\|904272_905151_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR02938.1\|901246_901963_+\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP029675.1\|AWR03371.1\|899783_900278_-\|acetyltransferase-domain-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP029675.1\|AWR03558.1\|908603_909425_+\|NLPA-lipofamily-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP029675.1\|AWR01149.1\|909778_909973_+\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP029675.1\|AWR03080.1\|900676_901099_-\|peroxiredoxin,-Ohr-subfamily-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP029675.1\|AWR02867.1\|902045_902585_+\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP029675.1\|AWR01952.1\|907932_908586_+\|methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	8.5871e-98
CP029675.1\|AWR02180.1\|899011_899629_-\|lysE-type-translocator-family-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP029675.1\|AWR03646.1\|912244_913552_+\|feS-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP029675.1\|AWR02181.1\|906872_907898_+\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	1.76735e-170
CP029675.1\|AWR03192.1\|911385_912147_+\|feS-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP029675.1\|AWR01279.1\|905947_906334_+\|toprim-domain-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP029675.1\|AWR03537.1\|903713_904094_+\|glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP029675.1\|AWR02990.1\|902735_903056_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP029675.1\|AWR03415.1\|910206_911058_-\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	7.67366e-77
CP029675.1\|AWR02064.1\|903199_903556_+\|transcriptional-regulator,-Spx/MgsR-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP029675.1\|AWR03162.1\|906326_906623_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP029675.1\|AWR02472.1\|913666_914908_+\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP029675.1\|AWR03421.1\|904272_905151_+\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77

>CP029675.1|AWR03421.1|904272_905151_+|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP029675.1|AWR02170.1|904157_904271_+|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP029675.1|AWR03537.1|903713_904094_+|glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP029675.1|AWR02064.1|903199_903556_+|transcriptional-regulator,-Spx/MgsR-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP029675.1|AWR02990.1|902735_903056_-|thioredoxin-family-protein
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP029675.1|AWR02867.1|902045_902585_+|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP029675.1|AWR02938.1|901246_901963_+|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP029675.1|AWR03080.1|900676_901099_-|peroxiredoxin,-Ohr-subfamily-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP029675.1|AWR03371.1|899783_900278_-|acetyltransferase-domain-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP029675.1|AWR02180.1|899011_899629_-|lysE-type-translocator-family-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>CP029675.1|AWR01279.1|905947_906334_+|toprim-domain-protein
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP029675.1|AWR03162.1|906326_906623_+|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP029675.1|AWR02181.1|906872_907898_+|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVNMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP029675.1|AWR01952.1|907932_908586_+|methionine-import-system-permease-protein-MetP
MPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP029675.1|AWR03558.1|908603_909425_+|NLPA-lipofamily-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP029675.1|AWR01149.1|909778_909973_+|hypothetical-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP029675.1|AWR03415.1|910206_911058_-|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP029675.1|AWR03192.1|911385_912147_+|feS-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP029675.1|AWR03646.1|912244_913552_+|feS-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP029675.1|AWR02472.1|913666_914908_+|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029675_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_5

1694413-1694497

Orphan

Consensus_repeat	Method
CACCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029675_5

>merge|CP029675|5|1694413-1694497|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAA

>CP029675|5|5|1694413-1694497|CRISPRCasFinder
CACCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCCA
CACCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR01358.1\|1689343_1691176_-\|chaperone-protein-DnaK	unknown	unknown	gnl\|CDD\|234715
CP029675.1\|AWR03535.1\|1702369_1702723_-\|ribosomal-silencing-factor-RsfS	unknown	unknown	gnl\|CDD\|223870
CP029675.1\|AWR02460.1\|1692979_1693945_-\|radical-SAM-superfamily-protein	unknown	unknown	gnl\|CDD\|236309
CP029675.1\|AWR02065.1\|1691244_1691871_-\|protein-GrpE	unknown	unknown	gnl\|CDD\|237622
CP029675.1\|AWR01713.1\|1691902_1692880_-\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
CP029675.1\|AWR01299.1\|1686372_1687125_-\|ribosomal-RNA-small-subunit-methyltransferase-E	unknown	unknown	gnl\|CDD\|224303
CP029675.1\|AWR01603.1\|1698165_1700367_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP029675.1\|AWR01180.1\|1694669_1696493_-\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
CP029675.1\|AWR02285.1\|1683623_1684295_-\|putative-membrane-bound-serine-protease	unknown	unknown	gnl\|CDD\|223961
CP029675.1\|AWR01146.1\|1688068_1689208_-\|chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP029675.1\|AWR01715.1\|1701650_1702367_-\|methyltransferase-type-12	unknown	unknown	gnl\|CDD\|379312
CP029675.1\|AWR01850.1\|1696838_1697090_+\|ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP029675.1\|AWR02562.1\|1684550_1684727_-\|ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP029675.1\|AWR03747.1\|1700924_1701602_-\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	unknown	unknown	gnl\|CDD\|224472
CP029675.1\|AWR01365.1\|1697134_1698109_-\|DNA-polymerase-III,-delta-subunit	unknown	unknown	gnl\|CDD\|235511
CP029675.1\|AWR02850.1\|1703297_1703867_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP029675.1\|AWR02385.1\|1702723_1703308_-\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224627
CP029675.1\|AWR01764.1\|1687126_1688065_-\|ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP029675.1\|AWR03186.1\|1700371_1700833_-\|comE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP029675.1\|AWR03768.1\|1685019_1686366_-\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR01358.1\|1689343_1691176_-\|chaperone-protein-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP029675.1\|AWR03535.1\|1702369_1702723_-\|ribosomal-silencing-factor-RsfS	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP029675.1\|AWR02460.1\|1692979_1693945_-\|radical-SAM-superfamily-protein	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP029675.1\|AWR02065.1\|1691244_1691871_-\|protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP029675.1\|AWR01713.1\|1691902_1692880_-\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP029675.1\|AWR01299.1\|1686372_1687125_-\|ribosomal-RNA-small-subunit-methyltransferase-E	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP029675.1\|AWR01603.1\|1698165_1700367_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.64233e-90
CP029675.1\|AWR01180.1\|1694669_1696493_-\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP029675.1\|AWR02285.1\|1683623_1684295_-\|putative-membrane-bound-serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	1.09532e-61
CP029675.1\|AWR01146.1\|1688068_1689208_-\|chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP029675.1\|AWR01715.1\|1701650_1702367_-\|methyltransferase-type-12	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.79783e-16
CP029675.1\|AWR01850.1\|1696838_1697090_+\|ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP029675.1\|AWR02562.1\|1684550_1684727_-\|ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP029675.1\|AWR03747.1\|1700924_1701602_-\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.07958e-34
CP029675.1\|AWR01365.1\|1697134_1698109_-\|DNA-polymerase-III,-delta-subunit	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP029675.1\|AWR02850.1\|1703297_1703867_-\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP029675.1\|AWR02385.1\|1702723_1703308_-\|HD-domain-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP029675.1\|AWR01764.1\|1687126_1688065_-\|ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP029675.1\|AWR03186.1\|1700371_1700833_-\|comE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
CP029675.1\|AWR03768.1\|1685019_1686366_-\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0

>CP029675.1|AWR02460.1|1692979_1693945_-|radical-SAM-superfamily-protein
MYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP029675.1|AWR01713.1|1691902_1692880_-|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP029675.1|AWR02065.1|1691244_1691871_-|protein-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP029675.1|AWR01358.1|1689343_1691176_-|chaperone-protein-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP029675.1|AWR01146.1|1688068_1689208_-|chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP029675.1|AWR01764.1|1687126_1688065_-|ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP029675.1|AWR01299.1|1686372_1687125_-|ribosomal-RNA-small-subunit-methyltransferase-E
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP029675.1|AWR03768.1|1685019_1686366_-|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYVSKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP029675.1|AWR02562.1|1684550_1684727_-|ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP029675.1|AWR02285.1|1683623_1684295_-|putative-membrane-bound-serine-protease
MESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP029675.1|AWR01180.1|1694669_1696493_-|GTP-binding-protein-LepA
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP029675.1|AWR01850.1|1696838_1697090_+|ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP029675.1|AWR01365.1|1697134_1698109_-|DNA-polymerase-III,-delta-subunit
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP029675.1|AWR01603.1|1698165_1700367_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLYVALSMIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP029675.1|AWR03186.1|1700371_1700833_-|comE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP029675.1|AWR03747.1|1700924_1701602_-|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP029675.1|AWR01715.1|1701650_1702367_-|methyltransferase-type-12
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP029675.1|AWR03535.1|1702369_1702723_-|ribosomal-silencing-factor-RsfS
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP029675.1|AWR02385.1|1702723_1703308_-|HD-domain-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP029675.1|AWR02850.1|1703297_1703867_-|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

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Crispr_ID: CP029675_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_6

2130454-2130535

Orphan

Consensus_repeat	Method
GGCCCCCACCCCAACTTACATTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029675_6

>merge|CP029675|6|2130454-2130535|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGTTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCCACCCCAACTTGCATTGT

>CP029675|6|6|2130454-2130535|CRISPRCasFinder
GGCCCCCACCCCAACTTACATTGT	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG
GGCCCCCACCCCAACTTGCATTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR02253.1\|2121640_2121883_-\|cro/C1-type-HTH-DNA-binding-domain-protein	unknown	unknown	gnl\|CDD\|283090
CP029675.1\|AWR01425.1\|2137776_2138346_-\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|226251
CP029675.1\|AWR02587.1\|2133891_2134692_-\|enterotoxin-type-C-3	unknown	unknown	gnl\|CDD\|280949
CP029675.1\|AWR03737.1\|2133000_2133723_+\|enterotoxin-type-E	unknown	unknown	gnl\|CDD\|280949
CP029675.1\|AWR03046.1\|2129166_2130369_+\|putative-succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP029675.1\|AWR02763.1\|2138686_2139214_-\|putative-spore-coat-protein	unknown	unknown	gnl\|CDD\|227864
CP029675.1\|AWR03087.1\|2139264_2139483_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374753
CP029675.1\|AWR03677.1\|2125575_2126400_+\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
CP029675.1\|AWR02220.1\|2135478_2136039_+\|putative-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|294014
CP029675.1\|AWR02549.1\|2123676_2123859_+\|hypothetical-protein	unknown	unknown	unknown
CP029675.1\|AWR03296.1\|2124481_2125519_+\|integrase	unknown	unknown	gnl\|CDD\|271189
CP029675.1\|AWR01488.1\|2130676_2131984_+\|ktr-system-potassium-uptake-protein-B	unknown	unknown	gnl\|CDD\|273349
CP029675.1\|AWR03287.1\|2127675_2128731_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369625
CP029675.1\|AWR01779.1\|2136341_2136473_-\|hypothetical-protein	unknown	unknown	unknown
CP029675.1\|AWR01777.1\|2138342_2138684_-\|putative-pathogenicity-island-protein	unknown	unknown	unknown
CP029675.1\|AWR03298.1\|2136917_2137622_+\|toxic-shock-syndrome-toxin-1	unknown	unknown	gnl\|CDD\|171853
CP029675.1\|AWR02290.1\|2126637_2127654_-\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|369625
CP029675.1\|AWR03784.1\|2122046_2122763_+\|peptidase-S24-like-family-protein	unknown	unknown	gnl\|CDD\|225484
CP029675.1\|AWR03147.1\|2123958_2124423_+\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|236154
CP029675.1\|AWR01630.1\|2122774_2123632_+\|HIRAN-domain-protein	unknown	unknown	gnl\|CDD\|214906

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR02253.1\|2121640_2121883_-\|cro/C1-type-HTH-DNA-binding-domain-protein	gnl\|CDD\|283090	pfam05339, DUF739, Protein of unknown function (DUF739). This family contains several bacteriophage proteins. Some of the proteins in this family have been labeled putative cro repressor proteins.	5.84085e-08
CP029675.1\|AWR01425.1\|2137776_2138346_-\|terminase-small-subunit	gnl\|CDD\|226251	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair].	4.68659e-70
CP029675.1\|AWR02587.1\|2133891_2134692_-\|enterotoxin-type-C-3	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	1.74895e-25
CP029675.1\|AWR03737.1\|2133000_2133723_+\|enterotoxin-type-E	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	6.68431e-31
CP029675.1\|AWR03046.1\|2129166_2130369_+\|putative-succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP029675.1\|AWR03087.1\|2139264_2139483_-\|hypothetical-protein	gnl\|CDD\|374753	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus. SAPIS-gp6 is a family of proteins produced from the pathogenicity island SAPI1 in pathogenic Staphylococcus aureus. This is a mobile genetic element that carries genes for several superantigen toxins. SAPIS-gp6 is a dimeric protein produced from the pathogenicity island with a helix-loop-helix motif similar to that of bacteriophage scaffolding proteins. It is thought to determine the size of the capsids of distribution of the SAPI1 genome as it acts as an internal scaffolding protein during capsid size determination.	1.38272e-18
CP029675.1\|AWR03677.1\|2125575_2126400_+\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	2.08835e-127
CP029675.1\|AWR02220.1\|2135478_2136039_+\|putative-penicillin-binding-protein	gnl\|CDD\|294014	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci. Some proteins in this family have been described as putative beta-lactamases. They are structurally similar to the C-terminal beta-grasp domains of Staphylococcal and Streptococcal superantigens.	1.47157e-43
CP029675.1\|AWR03296.1\|2124481_2125519_+\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.40962e-25
CP029675.1\|AWR01488.1\|2130676_2131984_+\|ktr-system-potassium-uptake-protein-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	1.35788e-81
CP029675.1\|AWR03287.1\|2127675_2128731_-\|hypothetical-protein	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	3.33169e-77
CP029675.1\|AWR03298.1\|2136917_2137622_+\|toxic-shock-syndrome-toxin-1	gnl\|CDD\|171853	PRK13038, PRK13038, superantigen-like protein; Reviewed.	1.96896e-09
CP029675.1\|AWR02763.1\|2138686_2139214_-\|putative-spore-coat-protein	gnl\|CDD\|227864	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane].	5.42048e-39
CP029675.1\|AWR02290.1\|2126637_2127654_-\|gamma-hemolysin-component-B	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99
CP029675.1\|AWR03784.1\|2122046_2122763_+\|peptidase-S24-like-family-protein	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	2.44903e-21
CP029675.1\|AWR03147.1\|2123958_2124423_+\|putative-lipoprotein	gnl\|CDD\|236154	PRK08119, PRK08119, flagellar motor switch protein; Validated.	0.00756653
CP029675.1\|AWR01630.1\|2122774_2123632_+\|HIRAN-domain-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	8.51444e-12

>CP029675.1|AWR03046.1|2129166_2130369_+|putative-succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYCLTVNIQISTSTFSLIK
>CP029675.1|AWR03287.1|2127675_2128731_-|hypothetical-protein
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPSILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP029675.1|AWR02290.1|2126637_2127654_-|gamma-hemolysin-component-B
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP029675.1|AWR03677.1|2125575_2126400_+|sphingomyelin-phosphodiesterase
MYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGNDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>CP029675.1|AWR03296.1|2124481_2125519_+|integrase
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTNTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEGGSIINLHAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP029675.1|AWR03147.1|2123958_2124423_+|putative-lipoprotein
MKRLLGLLLVSTLVLSACGNDENQEESKKEVKSKEKKIEKEKENKSKKDKEKEVATQQQPDNQTVEQPQSQEQSVQQPQQQIPQNSVPQQNVQVQQNKKQKVDLNNMPPTDFSTEGMSEQAQKQIEELSMQKDYHGLSQREYNDRVSEIINNDN
>CP029675.1|AWR02549.1|2123676_2123859_+|hypothetical-protein
MKITNCKIKRETVIYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKLDGDKLTKEDSL
>CP029675.1|AWR01630.1|2122774_2123632_+|HIRAN-domain-protein
MKPRKQDEKILSDQYSYFEPIISDSCDIKFDGDKRRIGSIFISHEEICFIRKEEDYIFKISLSDVVDYNTVVTIWKNQASLTLNDNRKITFYFVTNSPLTGFISILKTYMQLSRNKETIIPDDNLLINDDDEQTKVEIFDVVGLNYEGRRKELKKLIKKMKTNDAFFFLYSDLKGNELKEELLYEDKVYEIPDYEVIPGVFLQKEPDNPYDENAIKVMISNEYSEFHVGYVPREYASRLVNYIEDTVSCNAYINGGKYKTLDYLEEKIVTKESDYGLRIHVEYKV
>CP029675.1|AWR03784.1|2122046_2122763_+|peptidase-S24-like-family-protein
MNSFKDRLKQIMSERKISQSELSRRTGIGRNSISDYLNGKYEAKQDKVFELAKALNVNEAWLMGFDISKNRKIENNDIASIYSKLTPPRQKNVLNYANEQLDEQNTKGDNIVDINSYKQDRIAVNVNGCVSAGVGERLHGETLFTEMVKAPIPPHDLALKVNGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYRDLHFYRNESVRLVGKVIL
>CP029675.1|AWR02253.1|2121640_2121883_-|cro/C1-type-HTH-DNA-binding-domain-protein
MIYNFDYSLLYERMAEYRYSQSSLANAIPISRTSINHKLQGKNLFTQWEIKRICELLEIPPTKVGRYFFEQNVQKTVQTS
>CP029675.1|AWR01488.1|2130676_2131984_+|ktr-system-potassium-uptake-protein-B
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKMSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP029675.1|AWR03737.1|2133000_2133723_+|enterotoxin-type-E
MKKRLLFVIVITLFIFSSNHTVLSNGDVGPGNLRNFYTKYEYVNLKNVKDKNSPESHRLEYSYKNDTLYAEFDNEYITSDLKGKNVDVFGISYKYGSNSRTIYGGVTKAENNKLDSPRIIPINLIINGKHQTVTTKSVSTDKKMVTAQEIDVKLRKYLQDEFNIYGHNDTGKGKEYGTSSKFYSGFDKGSVVFHMNDGSNFSYDLFYTGYGLPESFLKIYKDNKTVDSTQFHLDVEISKR
>CP029675.1|AWR02587.1|2133891_2134692_-|enterotoxin-type-C-3
MYKRLFISRVILIFALILVISTPNVLAESQPDPMPDDLHKSSEFTGTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNISDKKLKNYDKVKTELLNEDLAKKYKDEVVDVYGSNYYVNCYFSSKDNVGKVTGGKTCMYGGITKHEGNHFDNGNLQNVLVRVYENKRNTISFEVQTDKKSVTAQELDIKARNFLINKKNLYEFNSSPYETGYIKFIENNGNTFWYDMMPAPGDKFDQSKYLMMYNDNKTVDSKSVKIEVHLTTKNG
>CP029675.1|AWR02220.1|2135478_2136039_+|putative-penicillin-binding-protein
MNKKLLTKTLIASALVLTTVGSGFHSSSNYNGINNVAKAEQTTDNALWKNVRDALKDANIIDKTDNENVKVTYKIENGGENTIEGTANLENISTSNNPKINPQNVTKINITRKNSNYPNIDANNTWKKLTEKLKEKNIVNNGDNVSILSTDPKDETVFGKVGEDKSNVSNRYINPKDINEIQITKK
>CP029675.1|AWR01779.1|2136341_2136473_-|hypothetical-protein
MGNLGYGLKIGLSKLSDKRFMKIAENPELNVLPLEYMGACILY
>CP029675.1|AWR03298.1|2136917_2137622_+|toxic-shock-syndrome-toxin-1
MNKKLLMNFFIVSPLLLATIATDFTPVPLSSNQIIKTAKASTNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN
>CP029675.1|AWR01425.1|2137776_2138346_-|terminase-small-subunit
MSELTAKQARFVNEYIRTLNVTQSAIKAGYSANSAHVTGCRLLKKPHIKQYIQEQKDKVIDENVLTAKELLHVLTNAAVGDETETKEVVVKRGEYKENPQSGKVQLVYNEHVELVEVPIKPSDRLKARDMLGKYHKLFTDKHDINGNVPIFINIGEWDGDDEDLDKTVQEVSNANPNHTVIVDDIPLED
>CP029675.1|AWR01777.1|2138342_2138684_-|putative-pathogenicity-island-protein
MDKKQIKDFVCDYHKRTISDVLIDDEINTDEFFSIGDENSNEWMADDNIDDHIVKNHLEMIVDQVANDKEFYIFDSLIQGRSFKDISNVLECSEQSVRLWYETLLDKIVEVIE
>CP029675.1|AWR02763.1|2138686_2139214_-|putative-spore-coat-protein
MKLLKTKNCLYYRNGDNKLSEYQLLTQFNPAFINKKIKMCEFQIESMYHMSASTTTCDEIMGVVSVSYPIEKLVIKIIETKAGLQNYKNRSINNMALLKKVLNHYTEKEQKQVVKYMRSNGRYKPYNVIERLQVDLYQASIKQRSERQKQRNTAIENSKIARVNAYHQSSYVKVV
>CP029675.1|AWR03087.1|2139264_2139483_-|hypothetical-protein
METKYELNNTKKVANAFGLNEADTNLLINAVDLDIKNNMQEISSELQQSEQSKQKQYGTTLQNLAKQNRIIK

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Crispr_ID: CP029675_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_7

2146097-2146185

Orphan

Consensus_repeat	Method
GTTTTTGACTGACTTCTCAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029675_7

>merge|CP029675|7|2146097-2146185|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCAATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAGTTTTTCGACTGACTTCTCAATCA

>CP029675|7|7|2146097-2146185|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCA	ATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAG
TTTTTCGACTGACTTCTCAATCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR02230.1\|2154915_2155050_-\|delta-hemolysin-domain-protein	unknown	unknown	gnl\|CDD\|173213
CP029675.1\|AWR02257.1\|2153530_2154316_+\|hydrolase,-carbon-nitrogen-family	unknown	unknown	gnl\|CDD\|143607
CP029675.1\|AWR01987.1\|2151099_2152347_-\|putative-sdrH-protein	unknown	unknown	gnl\|CDD\|236768
CP029675.1\|AWR01529.1\|2145193_2145403_-\|putative-pathogenicity-island-protein	unknown	unknown	unknown
CP029675.1\|AWR01696.1\|2145860_2146079_-\|helix-turn-helix-family-protein	unknown	unknown	gnl\|CDD\|197775
CP029675.1\|AWR02897.1\|2145395_2145542_-\|putative-membrane-protein	unknown	unknown	unknown
CP029675.1\|AWR02093.1\|2150331_2151075_+\|CAAX-protease-self-immunity-family-protein	unknown	unknown	gnl\|CDD\|376806
CP029675.1\|AWR01352.1\|2144864_2145191_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369323
CP029675.1\|AWR02504.1\|2145538_2145856_-\|DNA-binding,-excisionase-family-domain-protein	unknown	unknown	gnl\|CDD\|200128
CP029675.1\|AWR01338.1\|2149872_2150157_-\|10-kDa-chaperonin	unknown	unknown	gnl\|CDD\|178988
CP029675.1\|AWR03086.1\|2143930_2144800_-\|primase-C-terminal-1-family-protein	unknown	unknown	gnl\|CDD\|214926
CP029675.1\|AWR03185.1\|2155231_2155849_+\|accessory-gene-regulator-protein-B	unknown	unknown	gnl\|CDD\|226899
CP029675.1\|AWR03347.1\|2140089_2140314_-\|putative-saPI1-ORF8-like-protein	unknown	unknown	unknown
CP029675.1\|AWR03562.1\|2140879_2141521_-\|putative-saPI1-ORF9-like-protein	unknown	unknown	gnl\|CDD\|374630
CP029675.1\|AWR03552.1\|2148180_2149797_-\|chaperonin-GroL	unknown	unknown	gnl\|CDD\|234573
CP029675.1\|AWR01340.1\|2146251_2146926_+\|cro/C1-type-HTH-DNA-binding-domain-protein	unknown	unknown	gnl\|CDD\|379188
CP029675.1\|AWR01284.1\|2142207_2143917_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227806
CP029675.1\|AWR03647.1\|2152543_2153170_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP029675.1\|AWR02068.1\|2146939_2148112_+\|int-protein	unknown	unknown	gnl\|CDD\|271189
CP029675.1\|AWR03303.1\|2141517_2141898_-\|putative-interference-protein-with-phage-growth	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR02230.1\|2154915_2155050_-\|delta-hemolysin-domain-protein	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP029675.1\|AWR01987.1\|2151099_2152347_-\|putative-sdrH-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	8.13501e-10
CP029675.1\|AWR01338.1\|2149872_2150157_-\|10-kDa-chaperonin	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP029675.1\|AWR01696.1\|2145860_2146079_-\|helix-turn-helix-family-protein	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	9.85461e-11
CP029675.1\|AWR02093.1\|2150331_2151075_+\|CAAX-protease-self-immunity-family-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP029675.1\|AWR01352.1\|2144864_2145191_-\|hypothetical-protein	gnl\|CDD\|369323	pfam07342, DUF1474, Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	1.179e-19
CP029675.1\|AWR02504.1\|2145538_2145856_-\|DNA-binding,-excisionase-family-domain-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	5.89089e-17
CP029675.1\|AWR03086.1\|2143930_2144800_-\|primase-C-terminal-1-family-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	1.21323e-15
CP029675.1\|AWR03185.1\|2155231_2155849_+\|accessory-gene-regulator-protein-B	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	6.24386e-74
CP029675.1\|AWR02257.1\|2153530_2154316_+\|hydrolase,-carbon-nitrogen-family	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	5.69545e-126
CP029675.1\|AWR03562.1\|2140879_2141521_-\|putative-saPI1-ORF9-like-protein	gnl\|CDD\|374630	pfam16560, SAPI, Putative mobile pathogenicity island. SAPI is a family of putative Gram-positive mobile pathogenicity island proteins. SAPIs are responsible for many superantigen-related diseases in humans as they carry two or more superantigens.	3.70035e-117
CP029675.1\|AWR03552.1\|2148180_2149797_-\|chaperonin-GroL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP029675.1\|AWR01340.1\|2146251_2146926_+\|cro/C1-type-HTH-DNA-binding-domain-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.58614e-10
CP029675.1\|AWR01284.1\|2142207_2143917_-\|hypothetical-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
CP029675.1\|AWR03647.1\|2152543_2153170_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	8.42197e-117
CP029675.1\|AWR02068.1\|2146939_2148112_+\|int-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.67501e-47

>CP029675.1|AWR01696.1|2145860_2146079_-|helix-turn-helix-family-protein
MTILANTRKFKEAMFLKGFNLSDLSRETGVGISYLSQIINGKKIPSPKLAKKMAEVLQVEVNELFEFEVKEA
>CP029675.1|AWR02504.1|2145538_2145856_-|DNA-binding,-excisionase-family-domain-protein
MFNINIDEDEARELLEQAINARVDELAKEKYFMTYKELSNYLNLSKPTIEELLINNGMKYYMVGSTYRFKKSDVDEFMEQLTAHMNIQNNDFKQVNIKKLLEARQ
>CP029675.1|AWR02897.1|2145395_2145542_-|putative-membrane-protein
MKMYLTYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
>CP029675.1|AWR01529.1|2145193_2145403_-|putative-pathogenicity-island-protein
MNNEQKEVIEHVVYQLELSVVNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
>CP029675.1|AWR01352.1|2144864_2145191_-|hypothetical-protein
MNREIKDLFSDLKLLKDSFEDLKDSNGWHFDELYPYEPNHVLNKDELIGEGFSYHERRIHNNQMFDLFHLYIEQFDNIIEKFYEIEKASSENFGEESDDAKNSIKVAE
>CP029675.1|AWR03086.1|2143930_2144800_-|primase-C-terminal-1-family-protein
MNEIKLEYDTHVSVVHYESLDSRSFKSFSKPEWSKLVNKLSVPIEANYKYARGVAVYGDIKDGANDHGETIKKHRNDVNVIYRDVIVLDYDEINDLKQLHEAISSVLSSVAWYWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMNVDMLEQWSKEFEQSNASPNVIGYTRRDSEYWRELCFGTTEGNRNNALASLIGHLLRCHVNDYIVYSFALLWGQFACKPPMKEQEINATFQSILNKHYNN
>CP029675.1|AWR01284.1|2142207_2143917_-|hypothetical-protein
METGKSDVLDKIEKINKKDSALQEIIPKGYEIEHHQCGVALYQLIPSKKEGEPDKKVFITNTIPQITERFEDIESNEVSFNMLFYDNKTPVNIAVSAEEISDSRQLLKLVNKKLDVTSSTSTKLVDYINVSKRYNPPLNVKVATRLGHVKGYFIYPYQEVMKDSNVKLFSNDKGFQKLIDSFRSKGTLQGYSKKVFAQIKDLPMVMVMLYASLGSVLLREFGLQPFIVEISGSTSTGKTFTLNLVSSVWGTSDLITTWSSTQNSIESMASFLNSFPMFKDDTRNTHPKFVTSTTYNFSSGESKSRSNINLTLNAKKEWRNILISTGESSIANMADEKAGVSARVVTLQDPPYPDNFDFTTLDKSFRENYGTLGLAFIKQYESKKDVYKNAFESYQRYFNQKGSNEIMQRLGRAFALLQVTGEVLNDIDGFEHDHFKIIEQAYDSMVKNNKTIDKPKQLLEELLQYLDANRNNIVGDGYDSVNYGDVKAVYKHDFLCIKNETVKNKLGHEMQTITGQWDKKGYLIKDKKRIQKQVKHKSQRHLGYAIKKEIIEELGFDFSISHNPYTESY
>CP029675.1|AWR03303.1|2141517_2141898_-|putative-interference-protein-with-phage-growth
MDKEQLKKYIYEYVKEYKEIPIYQLEDLFKEINHDYIGRTSITHDKDENIVFWSGWNKITMFALIELVKSEQLDLVYRGSFIMRYLLDGRVPNLPLAICYPEDGQQTDVPSWVPMVLRINKEEKIK
>CP029675.1|AWR03562.1|2140879_2141521_-|putative-saPI1-ORF9-like-protein
MNLETIVNQFETRAGTLLRYYTGLLEHSKVQPCCFKLYNDPFDMVYVMMNSKLFGHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKHLSISDMMASHLFEDEYFMYGLQTYAESNNSDVFEYLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPAPELVEGLKLVTEFVQDENATQEDYKALERKLNDLKASYYSLSK
>CP029675.1|AWR03347.1|2140089_2140314_-|putative-saPI1-ORF8-like-protein
MGYEYNSSNERWLRRVINSLVYDYGYPIGCSYKPSERGYYIITTEQEKQQAMRSIKKLADGSMKRYEALKRIKV
>CP029675.1|AWR01340.1|2146251_2146926_+|cro/C1-type-HTH-DNA-binding-domain-protein
MIRNRLSELLSERGLKISRVAKDVKIARSSLTSMAQNDSEMIRYDAIDKLCSYLHISPSEFFEHNPINFDFTFDEEPNYKINDVFEGFEVTANITHAFSIENFDFEILVDVELDNRQKLNFDLDVSYKETEKITNSQHRFIFTIKNEDENIGLKKYVDSLSAGLKNLLFKKINQKLSGYVSEIIVKNIDDIEELFPNKGEKSTTLHKEILQTDSRLSSDIFKEY
>CP029675.1|AWR02068.1|2146939_2148112_+|int-protein
MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPSTSTFKQVADDWISQYANEVKVSSVRAREKAIHHAIERFKNKPIQTIKKHDYQRFVNDISIQYSKNYVDSIVTSTNMIFKYAYDMKLIRILPSEGIKRPKKKVSVEELEDTEIHKKFLEKDELFQFLEIAKNHHSPQNSFEVFYTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQYQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTNITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDLF
>CP029675.1|AWR03552.1|2148180_2149797_-|chaperonin-GroL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP029675.1|AWR01338.1|2149872_2150157_-|10-kDa-chaperonin
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP029675.1|AWR02093.1|2150331_2151075_+|CAAX-protease-self-immunity-family-protein
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP029675.1|AWR01987.1|2151099_2152347_-|putative-sdrH-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPDKPKPNLDPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP029675.1|AWR03647.1|2152543_2153170_+|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSKEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP029675.1|AWR02257.1|2153530_2154316_+|hydrolase,-carbon-nitrogen-family
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP029675.1|AWR02230.1|2154915_2155050_-|delta-hemolysin-domain-protein
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP029675.1|AWR03185.1|2155231_2155849_+|accessory-gene-regulator-protein-B
MIKDCTKSYNNSEESGVKLNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED

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Crispr_ID: CP029675_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_8

2275251-2275331

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP029675_8

>merge|CP029675|8|2275251-2275331|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP029675|8|8|2275251-2275331|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR01661.1\|2270125_2270356_-\|putative-membrane-protein	unknown	unknown	unknown
CP029675.1\|AWR02002.1\|2281691_2283230_+\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP029675.1\|AWR03202.1\|2268080_2269454_-\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP029675.1\|AWR03780.1\|2266567_2267011_-\|DNA-protection-during-starvation-protein-1	unknown	unknown	gnl\|CDD\|223854
CP029675.1\|AWR01879.1\|2274142_2275234_+\|putative-membrane-protein	unknown	unknown	unknown
CP029675.1\|AWR03398.1\|2279205_2281011_-\|glutamine-fructose-6-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234729
CP029675.1\|AWR02492.1\|2267210_2267624_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP029675.1\|AWR01582.1\|2265736_2266447_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP029675.1\|AWR03804.1\|2278191_2278974_-\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224044
CP029675.1\|AWR03709.1\|2285842_2286949_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP029675.1\|AWR02146.1\|2283264_2285397_+\|PRD-domain-protein	unknown	unknown	gnl\|CDD\|226234
CP029675.1\|AWR03350.1\|2276450_2276609_+\|hypothetical-protein	unknown	unknown	unknown
CP029675.1\|AWR02548.1\|2287267_2294713_-\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	unknown	unknown	gnl\|CDD\|275089
CP029675.1\|AWR02576.1\|2270386_2271325_-\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP029675.1\|AWR01198.1\|2276287_2276458_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950
CP029675.1\|AWR02606.1\|2277266_2278124_-\|HAD-hydrolase,-IIB-family-protein	unknown	unknown	gnl\|CDD\|223635
CP029675.1\|AWR02696.1\|2272899_2273877_+\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP029675.1\|AWR02082.1\|2271760_2272426_-\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|187554
CP029675.1\|AWR01692.1\|2285408_2285843_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP029675.1\|AWR02339.1\|2272577_2272898_+\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR03780.1\|2266567_2267011_-\|DNA-protection-during-starvation-protein-1	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP029675.1\|AWR02002.1\|2281691_2283230_+\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP029675.1\|AWR03202.1\|2268080_2269454_-\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP029675.1\|AWR02146.1\|2283264_2285397_+\|PRD-domain-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP029675.1\|AWR03398.1\|2279205_2281011_-\|glutamine-fructose-6-phosphate-transaminase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029675.1\|AWR03804.1\|2278191_2278974_-\|ABC-transporter-family-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP029675.1\|AWR01582.1\|2265736_2266447_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP029675.1\|AWR02492.1\|2267210_2267624_-\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP029675.1\|AWR03709.1\|2285842_2286949_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP029675.1\|AWR02548.1\|2287267_2294713_-\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.54008e-108
CP029675.1\|AWR02576.1\|2270386_2271325_-\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	1.00589e-128
CP029675.1\|AWR01198.1\|2276287_2276458_+\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00028059
CP029675.1\|AWR02606.1\|2277266_2278124_-\|HAD-hydrolase,-IIB-family-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
CP029675.1\|AWR02696.1\|2272899_2273877_+\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP029675.1\|AWR02082.1\|2271760_2272426_-\|NADH(P)-binding-family-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP029675.1\|AWR01692.1\|2285408_2285843_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP029675.1\|AWR02339.1\|2272577_2272898_+\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17

>CP029675.1|AWR01879.1|2274142_2275234_+|putative-membrane-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP029675.1|AWR02696.1|2272899_2273877_+|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP029675.1|AWR02339.1|2272577_2272898_+|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP029675.1|AWR02082.1|2271760_2272426_-|NADH(P)-binding-family-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP029675.1|AWR02576.1|2270386_2271325_-|mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSKDLDSVFEGDFTLMISYV
>CP029675.1|AWR01661.1|2270125_2270356_-|putative-membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP029675.1|AWR03202.1|2268080_2269454_-|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP029675.1|AWR02492.1|2267210_2267624_-|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP029675.1|AWR03780.1|2266567_2267011_-|DNA-protection-during-starvation-protein-1
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP029675.1|AWR01582.1|2265736_2266447_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP029675.1|AWR01198.1|2276287_2276458_+|hypothetical-protein
MSPKDTTRFETKPDHQAQFDWKESINFKTKDNQRIPLYIGVLLLYYSRFIIMHNNE
>CP029675.1|AWR03350.1|2276450_2276609_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP029675.1|AWR02606.1|2277266_2278124_-|HAD-hydrolase,-IIB-family-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP029675.1|AWR03804.1|2278191_2278974_-|ABC-transporter-family-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP029675.1|AWR03398.1|2279205_2281011_-|glutamine-fructose-6-phosphate-transaminase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP029675.1|AWR02002.1|2281691_2283230_+|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP029675.1|AWR02146.1|2283264_2285397_+|PRD-domain-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP029675.1|AWR01692.1|2285408_2285843_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP029675.1|AWR03709.1|2285842_2286949_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP029675.1|AWR02548.1|2287267_2294713_-|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPAAQPANQGGQANPAGGAAQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGITKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQTANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEIFKIENITDSTQTKMDAYKEVRQAATARKAQNATVSNATDEEVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNATANTDVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDANNGSTTEEKEAAKQQVQTEKTAADAAIDAAHSNVEVEAAKNAEIAKIEAIQPATTTKDNAKQAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDDNGVDTAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIEDAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALENINNGVDNGDVDDALTQGKAAIDTIQVDATVKPKANQAIEAKAEDTKESIDHSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPVVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNTEVAELQNVTIPAIEAIVPQNDPDANDTNNGTDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTVTSATDDAKDKPQANNNSSADASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGPVANNKAKDMQTNDTQKSVGSAANNKATQNDGANASPATVSNGSHSMHQDMLNVTKPEENKANAKSDQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE

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Crispr_ID: CP029675_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029675_10

2395329-2395409

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCGCCAACTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029675_10

>merge|CP029675|10|2395329-2395409|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTG

>CP029675|10|10|2395329-2395409|CRISPRCasFinder
TCTATGTTGGGGCCCCGCCAACTTG	CACATTATTGTAAGCTGACTTTCTGTCAGCT
TCTGTGTTGGGGCCCCGCCAACTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029675.1\|AWR01742.1\|2384821_2385730_-\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029675.1\|AWR03553.1\|2399703_2400198_+\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP029675.1\|AWR01968.1\|2386772_2389940_-\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029675.1\|AWR02461.1\|2392879_2393320_+\|marR-family-protein	unknown	unknown	gnl\|CDD\|197670
CP029675.1\|AWR03523.1\|2398381_2399641_-\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029675.1\|AWR03106.1\|2401910_2402516_-\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226628
CP029675.1\|AWR03437.1\|2385862_2386027_+\|hypothetical-protein	unknown	unknown	unknown
CP029675.1\|AWR01791.1\|2393402_2394524_+\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|341042
CP029675.1\|AWR01925.1\|2400736_2401741_-\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029675.1\|AWR01380.1\|2395552_2396575_-\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
CP029675.1\|AWR02006.1\|2394625_2394976_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029675.1\|AWR03256.1\|2391953_2392718_-\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP029675.1\|AWR02037.1\|2390056_2391322_-\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029675.1\|AWR02950.1\|2397439_2397886_-\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029675.1\|AWR03323.1\|2396594_2397194_-\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029675.1\|AWR02455.1\|2384283_2384415_-\|putative-nitrogen-regulation-protein-NIFR3	unknown	unknown	unknown
CP029675.1\|AWR01532.1\|2386271_2386589_+\|putative-membrane-protein	unknown	unknown	unknown
CP029675.1\|AWR02953.1\|2397899_2398385_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029675.1\|AWR03525.1\|2400199_2400706_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029675.1\|AWR01243.1\|2397200_2397434_-\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452

Protein	Function_ID	Function_description	E-value
CP029675.1\|AWR01742.1\|2384821_2385730_-\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.28102e-43
CP029675.1\|AWR03553.1\|2399703_2400198_+\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.93711e-97
CP029675.1\|AWR01968.1\|2386772_2389940_-\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029675.1\|AWR02461.1\|2392879_2393320_+\|marR-family-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP029675.1\|AWR03523.1\|2398381_2399641_-\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP029675.1\|AWR03106.1\|2401910_2402516_-\|ABC-transporter-family-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP029675.1\|AWR01791.1\|2393402_2394524_+\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.02034e-68
CP029675.1\|AWR01925.1\|2400736_2401741_-\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP029675.1\|AWR01380.1\|2395552_2396575_-\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.12237e-165
CP029675.1\|AWR02006.1\|2394625_2394976_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029675.1\|AWR03256.1\|2391953_2392718_-\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP029675.1\|AWR02037.1\|2390056_2391322_-\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	2.85443e-143
CP029675.1\|AWR02950.1\|2397439_2397886_-\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP029675.1\|AWR03323.1\|2396594_2397194_-\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP029675.1\|AWR02953.1\|2397899_2398385_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
CP029675.1\|AWR03525.1\|2400199_2400706_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64
CP029675.1\|AWR01243.1\|2397200_2397434_-\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25

>CP029675.1|AWR02006.1|2394625_2394976_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029675.1|AWR01791.1|2393402_2394524_+|sugar-(and-other)-transporter-family-protein
MYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029675.1|AWR02461.1|2392879_2393320_+|marR-family-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP029675.1|AWR03256.1|2391953_2392718_-|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029675.1|AWR02037.1|2390056_2391322_-|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLSSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029675.1|AWR01968.1|2386772_2389940_-|swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029675.1|AWR01532.1|2386271_2386589_+|putative-membrane-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP029675.1|AWR03437.1|2385862_2386027_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029675.1|AWR01742.1|2384821_2385730_-|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNINHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>CP029675.1|AWR02455.1|2384283_2384415_-|putative-nitrogen-regulation-protein-NIFR3
MYGAYLINEYHQDFKSIANFKVLKRMINVMMCYCVLFLEPRIS
>CP029675.1|AWR01380.1|2395552_2396575_-|molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQELYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029675.1|AWR03323.1|2396594_2397194_-|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP029675.1|AWR01243.1|2397200_2397434_-|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029675.1|AWR02950.1|2397439_2397886_-|molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029675.1|AWR02953.1|2397899_2398385_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP029675.1|AWR03523.1|2398381_2399641_-|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029675.1|AWR03553.1|2399703_2400198_+|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP029675.1|AWR03525.1|2400199_2400706_-|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029675.1|AWR01925.1|2400736_2401741_-|thiF-family-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029675.1|AWR03106.1|2401910_2402516_-|ABC-transporter-family-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029675_1	1.1\|187896\|33\|CP029675\|CRISPRCasFinder	187896-187928	33	CP029675.1	1424572-1424604	0	1.0
CP029675_3	3.1\|841801\|31\|CP029675\|CRISPRCasFinder	841801-841831	31	CP029675.1	311066-311096	0	1.0
CP029675_6	6.1\|2130478\|34\|CP029675\|CRISPRCasFinder	2130478-2130511	34	CP029675.1	841776-841809	0	1.0
CP029675_6	6.1\|2130478\|34\|CP029675\|CRISPRCasFinder	2130478-2130511	34	CP029675.1	1212836-1212869	0	1.0
CP029675_3	3.1\|841801\|31\|CP029675\|CRISPRCasFinder	841801-841831	31	CP029675.1	311011-311041	1	0.968
CP029675_3	3.1\|841801\|31\|CP029675\|CRISPRCasFinder	841801-841831	31	CP029675.1	1728895-1728925	1	0.968
CP029675_4	4.1\|905279\|34\|CP029675\|CRISPRCasFinder	905279-905312	34	CP029675.1	1424571-1424604	1	0.971
CP029675_5	5.1\|1694439\|33\|CP029675\|CRISPRCasFinder	1694439-1694471	33	CP029675.1	847335-847367	1	0.97
CP029675_5	5.1\|1694439\|33\|CP029675\|CRISPRCasFinder	1694439-1694471	33	CP029675.1	847394-847426	1	0.97
CP029675_5	5.1\|1694439\|33\|CP029675\|CRISPRCasFinder	1694439-1694471	33	CP029675.1	1424572-1424604	1	0.97
CP029675_6	6.1\|2130478\|34\|CP029675\|CRISPRCasFinder	2130478-2130511	34	CP029675.1	1822650-1822683	1	0.971
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	854579-854609	1	0.968
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	854635-854665	1	0.968
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	854691-854721	1	0.968
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	854747-854777	1	0.968
CP029675_1	1.1\|187896\|33\|CP029675\|CRISPRCasFinder	187896-187928	33	CP029675.1	847335-847367	2	0.939
CP029675_1	1.1\|187896\|33\|CP029675\|CRISPRCasFinder	187896-187928	33	CP029675.1	847394-847426	2	0.939
CP029675_1	1.1\|187896\|33\|CP029675\|CRISPRCasFinder	187896-187928	33	CP029675.1	1512920-1512952	2	0.939
CP029675_6	6.1\|2130478\|34\|CP029675\|CRISPRCasFinder	2130478-2130511	34	CP029675.1	1428945-1428978	2	0.941
CP029675_6	6.1\|2130478\|34\|CP029675\|CRISPRCasFinder	2130478-2130511	34	CP029675.1	2837211-2837244	2	0.941
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	89385-89415	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	387398-387428	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	675477-675507	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	854803-854833	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	905591-905621	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	1115845-1115875	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	1218432-1218462	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	1424530-1424560	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	1512964-1512994	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	1709077-1709107	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	2027945-2027975	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	2384553-2384583	2	0.935
CP029675_10	10.1\|2395354\|31\|CP029675\|CRISPRCasFinder	2395354-2395384	31	CP029675.1	2561580-2561610	2	0.935

1. spacer 1.1|187896|33|CP029675|CRISPRCasFinder matches to position: 1424572-1424604, mismatch: 0, identity: 1.0

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
*********************************

2. spacer 3.1|841801|31|CP029675|CRISPRCasFinder matches to position: 311066-311096, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

3. spacer 6.1|2130478|34|CP029675|CRISPRCasFinder matches to position: 841776-841809, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

4. spacer 6.1|2130478|34|CP029675|CRISPRCasFinder matches to position: 1212836-1212869, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

5. spacer 3.1|841801|31|CP029675|CRISPRCasFinder matches to position: 311011-311041, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

6. spacer 3.1|841801|31|CP029675|CRISPRCasFinder matches to position: 1728895-1728925, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttccattgcc	Protospacer
*********************** *******

7. spacer 4.1|905279|34|CP029675|CRISPRCasFinder matches to position: 1424571-1424604, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

8. spacer 5.1|1694439|33|CP029675|CRISPRCasFinder matches to position: 847335-847367, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

9. spacer 5.1|1694439|33|CP029675|CRISPRCasFinder matches to position: 847394-847426, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attggaaatccaatttctctgtgttggggccca	Protospacer
*****.***************************

10. spacer 5.1|1694439|33|CP029675|CRISPRCasFinder matches to position: 1424572-1424604, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

11. spacer 6.1|2130478|34|CP029675|CRISPRCasFinder matches to position: 1822650-1822683, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

12. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 854579-854609, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

13. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 854635-854665, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

14. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 854691-854721, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

15. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 854747-854777, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

16. spacer 1.1|187896|33|CP029675|CRISPRCasFinder matches to position: 847335-847367, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

17. spacer 1.1|187896|33|CP029675|CRISPRCasFinder matches to position: 847394-847426, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
************ **************.*****

18. spacer 1.1|187896|33|CP029675|CRISPRCasFinder matches to position: 1512920-1512952, mismatch: 2, identity: 0.939

tgggccccaacaaagagaaattggattcccaat	CRISPR spacer
tggaccccaacaaagagaaattgtattcccaat	Protospacer
***.******************* *********

19. spacer 6.1|2130478|34|CP029675|CRISPRCasFinder matches to position: 1428945-1428978, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

20. spacer 6.1|2130478|34|CP029675|CRISPRCasFinder matches to position: 2837211-2837244, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

21. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 89385-89415, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

22. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 387398-387428, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

23. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 675477-675507, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

24. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 854803-854833, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

25. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 905591-905621, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

26. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 1115845-1115875, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

27. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 1218432-1218462, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

28. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 1424530-1424560, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

29. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 1512964-1512994, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

30. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 1709077-1709107, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

31. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 2027945-2027975, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

32. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 2384553-2384583, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

33. spacer 10.1|2395354|31|CP029675|CRISPRCasFinder matches to position: 2561580-2561610, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029675_9	9.1\|2287598\|34\|CP029675\|CRISPRCasFinder	2287598-2287631	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP029675_9	9.1\|2287598\|34\|CP029675\|CRISPRCasFinder	2287598-2287631	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 9.1|2287598|34|CP029675|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

2. spacer 9.1|2287598|34|CP029675|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12282 : 60595

Streptococcus_phage(30.0%)

integrase,transposase,tRNA

attL 29531:29545|attR 68617:68631

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR02579.1\|12282_13569_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.5e-88	50.9
AWR03113.1\|14219_14915_+	azlC family protein	NA	NA	NA	NA
AWR02454.1\|14911_15241_+	branched-chain amino acid transport family protein	NA	NA	NA	NA
AWR02443.1\|15604_16573_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWR02518.1\|16880_17804_+	hypothetical protein	NA	NA	NA	NA
AWR02313.1\|17818_19786_+	DHH family protein	NA	NA	NA	NA
AWR02754.1\|19782_20229_+	ribosomal protein L9	NA	NA	NA	NA
AWR03273.1\|20260_21661_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	5.4e-111	48.1
AWR03288.1\|21938_23222_+	adenylosuccinate synthase	L7Y4J5	Megavirus	1.8e-68	34.6
AWR01973.1\|24424_25126_+	transcriptional regulatory protein WalR	W8CYM9	Bacillus_phage	3.5e-42	39.2
AWR01548.1\|25213_26965_+	sensor protein kinase WalK	W8CYF6	Bacillus_phage	1.5e-30	31.3
AWR02360.1\|26957_28292_+	yycH family protein	NA	NA	NA	NA
AWR02909.1\|28292_29081_+	yycH family protein	NA	NA	NA	NA
AWR01395.1\|29487_30270_+	metallo-beta-lactamase superfamily protein	A0A0C5AJ83	Bacteriophage	1.3e-37	36.2
29531:29545	attL	NA	NA	NA	NA
AWR02326.1\|30496_32815_+	LPXTG cell wall anchor domain protein	NA	NA	NA	NA
AWR01758.1\|33046_33184_-	putative membrane protein	NA	NA	NA	NA
AWR01658.1\|33182_33662_+	rRNA large subunit m3Psi methyltransferase RlmH	NA	NA	NA	NA
AWR02751.1\|33983_35240_+	hypothetical protein	NA	NA	NA	NA
AWR03679.1\|35654_35894_+	hypothetical protein	NA	NA	NA	NA
AWR01651.1\|35925_36600_-\|integrase	integrase core domain protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
AWR03219.1\|36690_36888_-	replication family protein	A0A286QS97	Streptococcus_phage	1.2e-08	62.0
AWR01462.1\|36900_37398_-	replication family protein	NA	NA	NA	NA
AWR02655.1\|37918_39181_-	plasmid recombination enzyme family protein	NA	NA	NA	NA
AWR03133.1\|39687_40086_-	glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein	NA	NA	NA	NA
AWR01541.1\|40308_41070_-	kanamycin nucleotidyltransferase	NA	NA	NA	NA
AWR01215.1\|41496_41946_-\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	7.1e-81	98.7
AWR02244.1\|42203_42371_+	HMG-CoA synthase domain protein	NA	NA	NA	NA
AWR03596.1\|43167_43911_+	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA
AWR02981.1\|44007_44436_+	maoC like domain protein	NA	NA	NA	NA
AWR02374.1\|44481_46488_-	penicillin-binding protein 2'	NA	NA	NA	NA
AWR03598.1\|46689_48345_+	methicillin resistance mecR1 protein	NA	NA	NA	NA
AWR02193.1\|48344_48716_+	methicillin resistance regulatory protein MecI	NA	NA	NA	NA
AWR01319.1\|49463_50333_+	ROK family protein	NA	NA	NA	NA
AWR02107.1\|50446_50752_-	rhodanese-like domain protein	NA	NA	NA	NA
AWR02663.1\|50842_51781_-	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
AWR03278.1\|51813_52878_-	dsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA
AWR01130.1\|53013_53274_+	metal-sensitive transcriptional repressor family protein	NA	NA	NA	NA
AWR03335.1\|53273_53918_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWR03028.1\|54256_54919_-	methyltransferase domain protein	NA	NA	NA	NA
AWR03084.1\|55452_56184_+	rRNA adenine N-6-methyltransferase	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
AWR02045.1\|56309_57092_-	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA
AWR01724.1\|57242_57620_-\|transposase	transposase C family protein	NA	NA	NA	NA
AWR01883.1\|57626_59318_-\|integrase	phage integrase family protein	NA	NA	NA	NA
AWR02536.1\|59275_59518_-\|transposase	putative transposase B domain protein	NA	NA	NA	NA
AWR02732.1\|59788_60031_-\|integrase	phage integrase family protein	NA	NA	NA	NA
AWR02858.1\|60238_60595_-\|integrase	phage integrase, N-terminal SAM-like domain protein	NA	NA	NA	NA
68617:68631	attR	NA	NA	NA	NA

DBSCAN-SWA_2

414103 : 460907

Streptococcus_phage(71.43%)

integrase,transposase

attL 417027:417043|attR 458791:458807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR02772.1\|414103_414244_-\|integrase	putative integrase	Q4ZE80	Staphylococcus_phage	5.9e-10	66.7
AWR02621.1\|414603_415215_+	toxin beta-grasp domain protein	NA	NA	NA	NA
AWR01187.1\|415311_415431_-	hypothetical protein	NA	NA	NA	NA
AWR01212.1\|415583_415952_+	hypothetical protein	NA	NA	NA	NA
AWR02415.1\|416132_416705_+	peptidase propeptide and YPEB domain protein	NA	NA	NA	NA
AWR01637.1\|416841_417105_-	hypothetical protein	NA	NA	NA	NA
417027:417043	attL	NA	NA	NA	NA
AWR03635.1\|417404_417656_+	transglycosylase associated family protein	NA	NA	NA	NA
AWR03533.1\|418081_418663_+	histidine phosphatase super family protein	NA	NA	NA	NA
AWR01346.1\|418728_419112_-	putative membrane protein	NA	NA	NA	NA
AWR02397.1\|419381_420008_-	hypothetical protein	NA	NA	NA	NA
AWR02438.1\|420080_420272_-	hypothetical protein	NA	NA	NA	NA
AWR01737.1\|420451_421975_-	alkyl hydroperoxide reductase subunit F	A0A249XZT7	Enterococcus_phage	1.4e-40	33.6
AWR02066.1\|421990_422560_-	peroxiredoxin	NA	NA	NA	NA
AWR01339.1\|423051_423807_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA
AWR02637.1\|423886_425275_-	L-cystine uptake protein TcyP	NA	NA	NA	NA
AWR02661.1\|426121_426979_+\|transposase	transposase family protein	NA	NA	NA	NA
AWR02692.1\|426978_427131_+\|transposase	transposase family protein	NA	NA	NA	NA
AWR02800.1\|427187_427439_+\|transposase	transposase family protein	NA	NA	NA	NA
AWR03486.1\|427770_428727_-	hypothetical protein	NA	NA	NA	NA
AWR02658.1\|428844_429507_-	hypothetical protein	NA	NA	NA	NA
AWR01175.1\|429649_430057_-	hypothetical protein	NA	NA	NA	NA
AWR01133.1\|430569_431148_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
AWR02275.1\|431147_432416_+	xanthine permease family protein	NA	NA	NA	NA
AWR01406.1\|432453_433920_+	inosine-5'-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
AWR03304.1\|433944_435486_+	GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
AWR02523.1\|435553_436747_-\|integrase	phage integrase family protein	A0A0S2MV79	Bacillus_phage	8.3e-44	34.2
AWR01773.1\|436773_436974_-	hypothetical protein	NA	NA	NA	NA
AWR02449.1\|437471_437702_-	helix-turn-helix domain protein	A0A1S5SEX1	Streptococcus_phage	1.0e-27	78.9
AWR03284.1\|437698_438121_-	RNA polymerase sigma factor, sigma-70 family protein	A0A1S5SEW0	Streptococcus_phage	7.5e-48	68.6
AWR03393.1\|438651_439005_+	helix-turn-helix family protein	A0A1S5SFA6	Streptococcus_phage	2.2e-53	89.7
AWR03364.1\|439347_441267_-	tetracycline resistance protein TetM	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.2
AWR03015.1\|441643_442573_-	conjugative transposon TcpC family protein	A0A1S5SF22	Streptococcus_phage	1.1e-83	56.6
AWR01606.1\|442589_443612_-	lysozyme-like family protein	A0A1S5SEZ8	Streptococcus_phage	2.4e-132	75.5
AWR03138.1\|443608_445636_-	putative membrane protein	A0A1S5SF30	Streptococcus_phage	5.1e-195	65.3
AWR02302.1\|445632_448086_-	AAA-like domain protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	78.9
AWR02632.1\|448069_448465_-	tcpE family protein	A0A1S5SEX7	Streptococcus_phage	5.9e-47	72.6
AWR01449.1\|448536_449175_-	hypothetical protein	NA	NA	NA	NA
AWR02196.1\|449230_449713_-	antirestriction family protein	A0A1S5SF25	Streptococcus_phage	4.4e-52	63.1
AWR01519.1\|449791_450571_-	abortive infection family protein	NA	NA	NA	NA
AWR01732.1\|450612_450834_-	putative membrane protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
AWR02890.1\|451117_452302_-	replication initiation factor family protein	A0A1S5SEX3	Streptococcus_phage	6.3e-161	68.1
AWR03079.1\|452483_453581_-	ftsK/SpoIIIE family protein	A0A1S5SFB5	Streptococcus_phage	8.2e-155	73.6
AWR01227.1\|453721_453856_+	hypothetical protein	NA	NA	NA	NA
AWR01381.1\|453908_454682_-	hypothetical protein	NA	NA	NA	NA
AWR03826.1\|454691_455069_-	hypothetical protein	A0A1S5SF96	Streptococcus_phage	9.6e-47	76.4
AWR01246.1\|455089_455404_-	hypothetical protein	A0A1S5SF38	Streptococcus_phage	1.2e-42	77.7
AWR02738.1\|455603_457397_-	uvrD/REP helicase N-terminal domain protein	E3T5J8	Cafeteria_roenbergensis_virus	6.9e-26	23.8
AWR01263.1\|457393_459583_-	AAA ATPase domain protein	NA	NA	NA	NA
458791:458807	attR	NA	NA	NA	NA
AWR03070.1\|459716_460907_-\|transposase	transposase, Mutator family protein	NA	NA	NA	NA

DBSCAN-SWA_3

779005 : 786826

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR01867.1\|779005_780061_-	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
AWR03835.1\|780060_780729_-	response regulator	NA	NA	NA	NA
AWR02502.1\|780721_781195_-	doxX family protein	NA	NA	NA	NA
AWR01570.1\|781537_781978_-	electron transfer DM13 family protein	NA	NA	NA	NA
AWR01589.1\|782257_782842_-	putative membrane protein	NA	NA	NA	NA
AWR02634.1\|782940_783654_-	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWR01336.1\|783657_784077_-	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWR01295.1\|784078_784747_-	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWR03829.1\|785097_785691_+	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AWR01844.1\|785674_786826_+	chorismate binding enzyme family protein	S4VNU7	Pandoravirus	6.0e-23	35.7

DBSCAN-SWA_4

798797 : 813382

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR03468.1\|798797_799856_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
AWR01289.1\|800194_800737_+	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWR01716.1\|801559_802477_-	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AWR01204.1\|802746_804252_-	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWR03150.1\|804592_805093_-	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWR02740.1\|805112_805979_-	eamA-like transporter family protein	NA	NA	NA	NA
AWR01230.1\|806779_807178_+	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWR03652.1\|807149_809246_+	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWR02241.1\|809363_810335_+	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AWR03599.1\|810709_811681_+	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AWR03121.1\|811667_812624_+	fecCD transport family protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWR01864.1\|812620_813382_+	ABC transporter family protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_5

864517 : 879747

Staphylococcus_phage(70.59%)

integrase,coat,terminase

attL 864185:864200|attR 870607:870622

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
864185:864200	attL	NA	NA	NA	NA
AWR01148.1\|864517_866890_+	ribonuclease R	Q0GXV6	Lactococcus_phage	4.3e-92	38.8
AWR01225.1\|866911_867376_+	ssrA-binding protein	W5RAM5	Staphylococcus_phage	1.6e-80	98.7
AWR01331.1\|867938_869045_-\|integrase	phage integrase family protein	H0UST3	Bacillus_phage	5.9e-76	44.2
AWR03692.1\|869050_869635_-	helix-turn-helix family protein	NA	NA	NA	NA
AWR03020.1\|869855_870062_+	putative prophage ps3 protein 14, transcriptional regulator	NA	NA	NA	NA
AWR01202.1\|870097_870325_+	helix-turn-helix family protein	NA	NA	NA	NA
AWR01328.1\|870321_870468_+	hypothetical protein	NA	NA	NA	NA
AWR02585.1\|870460_870670_+	hypothetical protein	Q4ZE76	Staphylococcus_phage	2.2e-29	92.8
870607:870622	attR	NA	NA	NA	NA
AWR03427.1\|870672_870990_+	hypothetical protein	Q4ZE75	Staphylococcus_phage	1.2e-18	48.1
AWR01757.1\|871056_871926_+	primase C terminal 1 family protein	A0A1W6JQL5	Staphylococcus_phage	3.2e-162	96.9
AWR03402.1\|871942_873412_+	virulence-associated E family protein	A0A1W6JQD6	Staphylococcus_phage	3.4e-289	99.6
AWR02439.1\|873697_874060_+	putative interference protein with phage growth	A0A1W6JQD5	Staphylococcus_phage	5.8e-65	98.3
AWR03276.1\|874061_874346_+	putative pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.2e-49	100.0
AWR02604.1\|874342_874984_+	putative saPI1 ORF9-like protein	Q4ZE67	Staphylococcus_phage	1.2e-110	92.5
AWR03495.1\|875432_875774_+	putative saPI1 ORF8-like protein	Q4ZE66	Staphylococcus_phage	1.4e-57	99.1
AWR02467.1\|875785_876364_+	putative pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AWR03275.1\|876475_876598_+	hypothetical protein	NA	NA	NA	NA
AWR01634.1\|876927_877173_+\|coat	putative spore coat protein	A0A1W6JQH7	Staphylococcus_phage	5.0e-36	100.0
AWR01947.1\|877175_877517_+	putative pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	1.4e-57	99.1
AWR01663.1\|877513_878083_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	9.3e-102	98.9
AWR02370.1\|878359_879328_+	abi-like family protein	A0A0H4U080	Erysipelothrix_phage	5.9e-24	27.3
AWR03372.1\|879552_879747_+	hypothetical protein	A0A2H4JAH5	uncultured_Caudovirales_phage	8.2e-10	45.9

DBSCAN-SWA_6

913666 : 970977

Staphylococcus_phage(77.46%)

capsid,head,integrase,tail,holin,transposase,terminase,portal

attL 915478:915494|attR 924478:924494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR02472.1\|913666_914908_+	putative cysteine desulfurase	Q2XUY6	environmental_halophage	8.2e-111	44.8
AWR02742.1\|914897_915362_+	SUF system FeS assembly protein, NifU family	NA	NA	NA	NA
915478:915494	attL	NA	NA	NA	NA
AWR01586.1\|915512_916910_+	feS assembly protein SufB	NA	NA	NA	NA
AWR01880.1\|916977_918027_-\|integrase	phage integrase family protein	A1KWY3	Staphylococcus_virus	1.6e-203	100.0
AWR02988.1\|918138_918318_+	putative excisionase	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
AWR03612.1\|918297_919230_-	putative phage protein	A0EWN8	Staphylococcus_virus	3.9e-174	100.0
AWR03810.1\|919261_919726_-	hypothetical protein	A0A2I6PEK4	Staphylococcus_phage	3.6e-80	94.1
AWR01796.1\|919738_920068_-	helix-turn-helix family protein	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
AWR02493.1\|920228_920420_+	helix-turn-helix family protein	A0A2I6PEL6	Staphylococcus_phage	2.3e-28	100.0
AWR03540.1\|920508_920652_+	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AWR02389.1\|920641_920851_-	hypothetical protein	W5R9J5	Staphylococcus_phage	1.2e-30	100.0
AWR02446.1\|920907_921687_+	phage antirepressor KilAC domain protein	M1RZB2	Staphylococcus_phage	4.1e-132	92.6
AWR01472.1\|921687_921912_+	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
AWR01751.1\|921951_922095_+	hypothetical protein	W5R8I6	Staphylococcus_phage	2.5e-16	100.0
AWR02544.1\|922116_922764_-	hypothetical protein	S4V9K2	Staphylococcus_phage	2.0e-113	100.0
AWR02557.1\|922834_923056_+	hypothetical protein	E0Y3P2	Staphylococcus_virus	1.5e-31	100.0
AWR02041.1\|923302_923605_+	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	1.4e-48	100.0
AWR03471.1\|923609_923870_+	hypothetical protein	C8CGY6	Staphylococcus_phage	8.9e-44	100.0
AWR02501.1\|923879_924101_+	hypothetical protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AWR02797.1\|924093_924216_+	hypothetical protein	NA	NA	NA	NA
AWR01267.1\|924235_924718_+	hypothetical protein	A0A2H4PQQ6	Staphylococcus_phage	1.0e-85	99.4
924478:924494	attR	NA	NA	NA	NA
AWR03241.1\|924717_925143_+	single-stranded DNA-binding protein ssb	B7T0A5	Staphylococcus_virus	2.1e-58	88.7
AWR01770.1\|925153_925705_+	NUMOD4 motif family protein	A0A2H4PQR4	Staphylococcus_phage	5.1e-105	98.9
AWR01918.1\|925705_926380_+	hypothetical protein	R4IH15	Staphylococcus_phage	1.5e-127	97.8
AWR03359.1\|926519_926801_-	pTS system, fructose subfamily, IIA component domain protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
AWR01598.1\|926865_927597_+	helix-turn-helix domain protein	A0A1J0MGB2	Staphylococcus_phage	9.8e-80	78.8
AWR03158.1\|927609_928395_+	bacterial dnaA family protein	A0A0H4J332	Staphylococcus_phage	1.9e-145	100.0
AWR01934.1\|928436_928550_+	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	3.9e-12	91.9
AWR02402.1\|928562_928784_+	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	2.2e-35	100.0
AWR02796.1\|928793_929198_+	hypothetical protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
AWR03472.1\|929202_929388_+	hypothetical protein	W5R8N4	Staphylococcus_phage	1.4e-27	100.0
AWR03424.1\|929388_929760_+	PVL ORF-50-like family protein	A7TWN6	Staphylococcus_phage	4.0e-53	95.9
AWR03188.1\|929760_930009_+	phage family protein	S4V683	Staphylococcus_phage	8.8e-41	97.6
AWR03740.1\|930023_930272_+	hypothetical protein	A0A2H4PQK1	Staphylococcus_phage	1.7e-36	93.9
AWR01162.1\|930264_930801_+	dUTPase family protein	A0A1P8L6E0	Staphylococcus_phage	2.1e-95	100.0
AWR01676.1\|930837_931044_+	hypothetical protein	A0A1W6JPM8	Staphylococcus_phage	4.9e-21	100.0
AWR03586.1\|931040_931235_+	hypothetical protein	S4SX95	Staphylococcus_phage	7.9e-29	100.0
AWR02265.1\|931231_931435_+	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
AWR02561.1\|931427_931664_+	hypothetical protein	S4SWB7	Staphylococcus_phage	1.6e-36	100.0
AWR03246.1\|931656_932040_+	hypothetical protein	Q4ZBS3	Staphylococcus_virus	3.3e-63	99.2
AWR02444.1\|932039_932213_+	transcriptional activator RinB family protein	S4SVE4	Staphylococcus_phage	1.1e-21	98.2
AWR03063.1\|932213_932360_+	hypothetical protein	Q4ZDN7	Staphylococcus_virus	1.3e-15	100.0
AWR03482.1\|932374_932794_+	phage transcriptional regulator, RinA family protein	I1W651	Staphylococcus_phage	8.1e-71	100.0
AWR01596.1\|932980_933421_+\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	2.4e-73	99.3
AWR01168.1\|933407_934685_+\|terminase	phage terminase, large subunit, PBSX family	A0EWS5	Staphylococcus_virus	5.1e-249	99.8
AWR03410.1\|934695_936231_+\|portal	phage portal protein, SPP1 family	Q4ZDV9	Staphylococcus_virus	9.3e-290	99.4
AWR02515.1\|936237_937233_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	E0Y3K7	Staphylococcus_virus	3.4e-184	100.0
AWR03208.1\|937305_937476_+	hypothetical protein	Q4ZDF2	Staphylococcus_virus	3.3e-23	100.0
AWR01311.1\|937610_938225_+	hypothetical protein	A0EWS9	Staphylococcus_virus	4.9e-40	100.0
AWR03808.1\|938238_938547_+\|capsid	phage capsid family protein	Q8SDU5	Staphylococcus_phage	1.0e-46	100.0
AWR01178.1\|938543_939212_+\|capsid	phage major capsid protein, HK97 family	S4V686	Staphylococcus_phage	6.1e-121	100.0
AWR02956.1\|939233_939521_+	hypothetical protein	S4V6D9	Staphylococcus_phage	4.7e-46	100.0
AWR03446.1\|939529_939862_+\|head,tail	phage gp6-like head-tail connector family protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AWR03016.1\|939858_940161_+	hypothetical protein	S4V7K8	Staphylococcus_phage	1.1e-50	100.0
AWR03425.1\|940160_940508_+	hypothetical protein	S4V987	Staphylococcus_phage	3.1e-60	100.0
AWR02312.1\|940519_940903_+	putative phi 11	A0A0F6N3L1	Staphylococcus_phage	1.5e-68	100.0
AWR03633.1\|940921_941503_+\|tail	phage major tail protein, TP901-1 family	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
AWR02638.1\|941564_941930_+	phage family protein	S4V9M6	Staphylococcus_phage	2.8e-59	100.0
AWR03300.1\|941959_942304_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AWR02741.1\|942320_945785_+	putative membrane protein	S4V989	Staphylococcus_phage	5.8e-271	100.0
AWR03492.1\|945797_946745_+\|tail	phage tail family protein	S4V688	Staphylococcus_phage	3.6e-183	100.0
AWR01421.1\|946753_948655_+\|tail	prophage endopeptidase tail family protein	Q4ZDD8	Staphylococcus_virus	0.0e+00	100.0
AWR01240.1\|948669_950580_+	putative minor structural protein	A1KX41	Staphylococcus_virus	0.0e+00	99.8
AWR02404.1\|950579_952403_+	hypothetical protein	W5R8J5	Staphylococcus_phage	7.4e-294	99.2
AWR02715.1\|952402_952780_+	hypothetical protein	Q9FZY7	Staphylococcus_virus	3.4e-60	99.2
AWR01145.1\|952783_952957_+	hypothetical protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
AWR02747.1\|952997_953297_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWR03118.1\|953433_955332_+	CHAP domain protein	Q8SDT1	Staphylococcus_phage	0.0e+00	99.8
AWR02662.1\|955344_956583_+	hypothetical protein	A0A0F6N3G7	Staphylococcus_phage	2.7e-207	98.1
AWR02677.1\|956588_956984_+	hypothetical protein	A0A0E3XBL9	Staphylococcus_phage	1.4e-67	97.7
AWR02546.1\|957039_957477_+\|holin	holin, phage phi LC3 family	Q8SDS8	Staphylococcus_phage	6.9e-73	99.3
AWR01528.1\|957457_958903_+	CHAP domain protein	Q08JW9	Staphylococcus_phage	1.8e-295	99.8
AWR01514.1\|959169_959298_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
AWR02158.1\|959480_959666_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AWR01489.1\|959998_960631_+	hypothetical protein	NA	NA	NA	NA
AWR01546.1\|960800_961055_+	hypothetical protein	NA	NA	NA	NA
AWR02768.1\|961720_962035_-	putative membrane protein	NA	NA	NA	NA
AWR02309.1\|962399_963440_+	CBS domain protein	NA	NA	NA	NA
AWR03575.1\|963453_964521_+	FMN-dependent dehydrogenase family protein	NA	NA	NA	NA
AWR01812.1\|964905_965754_+	hypothetical protein	NA	NA	NA	NA
AWR03030.1\|965766_966594_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWR01584.1\|966620_967940_+	5'-nucleotidase, C-terminal domain protein	NA	NA	NA	NA
AWR03663.1\|968023_968941_+	lipoyl synthase	NA	NA	NA	NA
AWR01350.1\|969070_969454_+	hypothetical protein	NA	NA	NA	NA
AWR03179.1\|969659_970208_+\|transposase	helix-turn-helix domain of transposase ISL3 family protein	NA	NA	NA	NA
AWR02746.1\|970261_970516_+\|transposase	transposase family protein	NA	NA	NA	NA
AWR03449.1\|970515_970977_+\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_7

1117418 : 1125828

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR03183.1\|1117418_1117838_+	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	1.2e-18	45.8
AWR02554.1\|1117824_1118949_+	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWR01594.1\|1118952_1119657_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AWR02908.1\|1119656_1119920_+	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWR02924.1\|1119921_1120593_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWR02104.1\|1120585_1122775_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.5e-141	39.8
AWR02821.1\|1122753_1124238_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AWR01521.1\|1124230_1125259_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AWR03783.1\|1125261_1125828_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_8

1744083 : 1753126

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR02713.1\|1744083_1744602_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
AWR02720.1\|1744623_1746897_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AWR03567.1\|1747099_1749379_-	protein-export membrane protein SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AWR01496.1\|1749653_1749914_-	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWR02131.1\|1749932_1751072_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWR01708.1\|1751094_1752120_-\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AWR02483.1\|1752121_1753126_-	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_9

1763852 : 1814126

Bacillus_virus(16.67%)

integrase,protease,transposase,tRNA

attL 1759186:1759202|attR 1771401:1771417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1759186:1759202	attL	NA	NA	NA	NA
AWR03701.1\|1763852_1765745_-\|integrase	phage integrase family protein	NA	NA	NA	NA
AWR01169.1\|1765741_1766827_-\|integrase	phage integrase, N-terminal SAM-like domain protein	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
AWR01892.1\|1766945_1767500_-	DNA repair RadC family protein	NA	NA	NA	NA
AWR02056.1\|1767496_1768204_-	type IV leader peptidase family protein	NA	NA	NA	NA
AWR03589.1\|1768473_1769745_-	bifunctional FolC family protein	NA	NA	NA	NA
AWR01251.1\|1769757_1772388_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	2.8e-153	40.7
1771401:1771417	attR	NA	NA	NA	NA
AWR03520.1\|1772790_1773351_+	methyladenine glycosylase family protein	NA	NA	NA	NA
AWR01873.1\|1773573_1774554_-	membrane AbrB duplication domain protein	NA	NA	NA	NA
AWR02067.1\|1774525_1774675_+	hypothetical protein	NA	NA	NA	NA
AWR02185.1\|1774842_1776129_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
AWR03001.1\|1776176_1777151_-	delta-aminolevulinic acid dehydratase	NA	NA	NA	NA
AWR02299.1\|1777153_1777822_-	uroporphyrinogen-III synthase HemD family protein	NA	NA	NA	NA
AWR02069.1\|1777843_1778770_-	porphobilinogen deaminase	NA	NA	NA	NA
AWR01446.1\|1778811_1779627_-	cytochrome C assembly family protein	NA	NA	NA	NA
AWR02582.1\|1779648_1780995_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
AWR02330.1\|1781211_1781802_-	ribosome biogenesis GTP-binding protein YsxC	NA	NA	NA	NA
AWR03460.1\|1781955_1783218_-\|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.0e-140	62.0
AWR02683.1\|1783368_1784670_-	trigger factor	NA	NA	NA	NA
AWR03235.1\|1784832_1785762_-	hypothetical protein	NA	NA	NA	NA
AWR01909.1\|1785780_1786389_-	hypothetical protein	A0A060AB76	Staphylococcus_phage	6.6e-21	35.9
AWR02373.1\|1786530_1786887_-	ribosomal protein L20	NA	NA	NA	NA
AWR01232.1\|1786933_1787134_-	ribosomal protein L35	NA	NA	NA	NA
AWR02450.1\|1787162_1787690_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.1e-11	33.1
AWR02479.1\|1787918_1789412_-	amino acid permease family protein	NA	NA	NA	NA
AWR03741.1\|1789837_1791775_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	5.0e-115	35.8
AWR02776.1\|1792187_1793108_-	ATPase associated with various cellular activities family protein	S5MU12	Brevibacillus_phage	8.1e-31	29.4
AWR03072.1\|1793107_1794508_-	replication initiation and membrane attachment family protein	NA	NA	NA	NA
AWR02035.1\|1794508_1794979_-	transcriptional regulator NrdR	NA	NA	NA	NA
AWR02597.1\|1795189_1796215_-	glyceraldehyde-3-phosphate dehydrogenase, type I	NA	NA	NA	NA
AWR01855.1\|1796384_1797008_-	dephospho-CoA kinase	NA	NA	NA	NA
AWR01242.1\|1797023_1797896_-	formamidopyrimidine-DNA glycosylase	G3MA33	Bacillus_virus	2.6e-42	39.1
AWR01717.1\|1797911_1800542_-	DNA polymerase I	A8E2B3	Enterococcus_phage	6.1e-47	33.0
AWR02670.1\|1800835_1802323_-	putative membrane protein	NA	NA	NA	NA
AWR01440.1\|1802821_1804462_-	sensory box protein	W8CYF6	Bacillus_phage	5.7e-35	39.4
AWR03643.1\|1804482_1805187_-	alkaline phosphatase synthesis transcriptional regulatory protein PhoP	Q6XM27	Feldmannia_irregularis_virus	1.6e-07	28.7
AWR03014.1\|1805576_1806845_-	isocitrate dehydrogenase, NADP-dependent	NA	NA	NA	NA
AWR02286.1\|1806893_1808015_-	citrate synthase 2	NA	NA	NA	NA
AWR01820.1\|1808362_1809724_+	amino acid permease family protein	NA	NA	NA	NA
AWR01195.1\|1810071_1811829_-	pyruvate kinase	A0A2H4PQU5	Staphylococcus_phage	2.6e-41	100.0
AWR03430.1\|1811850_1812819_-	6-phosphofructokinase	NA	NA	NA	NA
AWR02366.1\|1813058_1813409_+\|transposase	helix-turn-helix domain of transposase ISL3 family protein	NA	NA	NA	NA
AWR03332.1\|1813387_1813579_+\|transposase	putative transposase	NA	NA	NA	NA
AWR03664.1\|1813910_1814126_+\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_10

1876883 : 1993330

112

Staphylococcus_phage(86.44%)

integrase,protease,transposase,tRNA

attL 1894440:1894456|attR 1943775:1943791

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR03659.1\|1876883_1877528_-\|tRNA	tRNA (guanine-N(7)-)-methyltransferase	NA	NA	NA	NA
AWR02430.1\|1877542_1878334_-	phosphotransferase enzyme family protein	NA	NA	NA	NA
AWR01182.1\|1878883_1879732_-	D-amino-acid transaminase	NA	NA	NA	NA
AWR03632.1\|1879735_1881145_-	dipeptidase family protein	NA	NA	NA	NA
AWR02745.1\|1881702_1882125_-	hypothetical protein	NA	NA	NA	NA
AWR03044.1\|1882141_1882837_-	pseudouridine synthase family protein	NA	NA	NA	NA
AWR03363.1\|1882833_1884495_-	polysaccharide biosynthesis family protein	NA	NA	NA	NA
AWR01932.1\|1884901_1885804_+	flavo, HI0933 family protein	NA	NA	NA	NA
AWR02718.1\|1885796_1886051_+	HI0933-like family protein	A0A2H4PQX1	Staphylococcus_phage	8.2e-42	98.8
AWR01499.1\|1886167_1886776_-	LPXTG cell wall anchor domain protein	NA	NA	NA	NA
AWR02809.1\|1886775_1892727_-	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	5.6e-306	98.3
AWR02716.1\|1893052_1893364_-	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AWR02848.1\|1893385_1895800_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
1894440:1894456	attL	NA	NA	NA	NA
AWR01326.1\|1896090_1897272_-	sugar (and other) transporter family protein	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AWR02513.1\|1897381_1898335_+	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWR01205.1\|1898331_1898895_+	rRNA methylase family protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AWR01921.1\|1899017_1899419_-	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWR02359.1\|1899988_1900816_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
AWR02524.1\|1901049_1902051_+	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AWR02920.1\|1902172_1902637_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AWR02541.1\|1902649_1903831_-	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AWR02861.1\|1903841_1904474_-	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AWR02530.1\|1904480_1905512_-	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
AWR01760.1\|1906004_1907507_-	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AWR01776.1\|1908337_1909636_+	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	8.6e-228	99.5
AWR01939.1\|1909722_1910577_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	1.3e-38	38.6
AWR01961.1\|1910852_1911077_-	hypothetical protein	NA	NA	NA	NA
AWR01675.1\|1911275_1911746_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AWR01839.1\|1912158_1912302_+	hypothetical protein	NA	NA	NA	NA
AWR01239.1\|1912288_1912732_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AWR02111.1\|1913027_1913663_+\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWR02327.1\|1914102_1914816_-	transaldolase	M1PR54	Cyanophage	9.4e-19	35.3
AWR02674.1\|1915075_1915378_+	putative membrane protein	NA	NA	NA	NA
AWR01375.1\|1915633_1915999_+	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AWR01438.1\|1915995_1916349_+	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AWR02351.1\|1916996_1917161_+\|transposase	putative transposase	A0A146ICT8	Staphylococcus_phage	2.9e-24	98.1
AWR02711.1\|1917599_1918283_+\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.2e-124	96.5
AWR03343.1\|1918345_1919179_-	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AWR03721.1\|1919390_1920299_-	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AWR01535.1\|1920420_1921617_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AWR03088.1\|1921988_1923581_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AWR01344.1\|1923958_1924729_-	prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	1.5e-142	98.8
AWR01503.1\|1924709_1925189_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AWR02793.1\|1925248_1925506_+	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AWR02792.1\|1925502_1926504_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AWR01992.1\|1926508_1927987_-	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.8e-283	97.6
AWR01854.1\|1928145_1928586_-	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	2.6e-80	99.3
AWR02857.1\|1928939_1929554_+	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	1.1e-42	93.1
AWR02933.1\|1929634_1930630_+	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AWR02365.1\|1930704_1931331_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AWR02773.1\|1931371_1931713_+	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AWR02961.1\|1931813_1932386_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AWR02115.1\|1932583_1933153_-\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.3e-55	56.8
AWR03739.1\|1934183_1934594_-\|transposase	putative transposase	NA	NA	NA	NA
AWR02177.1\|1934607_1934739_+	hypothetical protein	NA	NA	NA	NA
AWR02223.1\|1935135_1936365_-	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	6.8e-134	64.7
AWR03076.1\|1936357_1937914_-	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
AWR01920.1\|1938274_1938994_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AWR01492.1\|1939151_1939871_-\|protease	serine protease SplF	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AWR02755.1\|1939991_1940711_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AWR03439.1\|1940768_1941491_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AWR02248.1\|1941615_1942323_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AWR01411.1\|1943285_1943867_+	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
1943775:1943791	attR	NA	NA	NA	NA
AWR02851.1\|1944016_1944136_+	hypothetical protein	NA	NA	NA	NA
AWR03773.1\|1944339_1944612_-	putative membrane protein	A0A2H4PQH0	Staphylococcus_phage	3.1e-31	83.5
AWR01752.1\|1944813_1945287_+	hypothetical protein	NA	NA	NA	NA
AWR03211.1\|1945291_1946083_+	hypothetical protein	NA	NA	NA	NA
AWR01881.1\|1946069_1946195_-	hypothetical protein	NA	NA	NA	NA
AWR03270.1\|1946452_1947436_-	leucotoxin LukDv	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
AWR03326.1\|1947437_1948373_-	leucotoxin LukEv	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AWR02980.1\|1949736_1950525_+	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	1.0e-143	98.1
AWR02928.1\|1951358_1951853_+	hypothetical protein	NA	NA	NA	NA
AWR03694.1\|1951930_1952167_+	hypothetical protein	NA	NA	NA	NA
AWR01894.1\|1952187_1952964_+	hypothetical protein	NA	NA	NA	NA
AWR03485.1\|1953515_1954292_-	enterotoxin type G	NA	NA	NA	NA
AWR02160.1\|1954574_1955072_-	enterotoxin H	A0A075M4C7	Staphylococcus_phage	4.7e-33	45.5
AWR03139.1\|1955368_1955764_-	enterotoxin type C-1	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-26	50.4
AWR02421.1\|1955738_1956086_-	enterotoxin type B	A0A097PAT7	Streptococcus_pyogenes_phage	3.0e-10	37.9
AWR02505.1\|1956293_1957022_-	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AWR03688.1\|1957056_1957776_-	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AWR03733.1\|1958056_1958821_-	enterotoxin type D	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
AWR02409.1\|1960198_1960753_-	serine hydrolase family protein	NA	NA	NA	NA
AWR01517.1\|1961075_1962476_-	protoporphyrinogen oxidase	NA	NA	NA	NA
AWR01711.1\|1962499_1963423_-	ferrochelatase	NA	NA	NA	NA
AWR03212.1\|1963480_1964518_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AWR03369.1\|1964780_1965284_+	signal transduction protein TRAP	NA	NA	NA	NA
AWR01203.1\|1965407_1966631_-	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA
AWR03156.1\|1966623_1967364_-	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AWR02545.1\|1967497_1967920_+	protein hit	NA	NA	NA	NA
AWR03563.1\|1968061_1968427_+	hypothetical protein	NA	NA	NA	NA
AWR02428.1\|1969161_1969719_+	hypothetical protein	NA	NA	NA	NA
AWR01638.1\|1969923_1970886_+	foldase protein PrsA	NA	NA	NA	NA
AWR02218.1\|1971006_1971948_-	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AWR01916.1\|1971944_1974881_-	AAA domain protein	NA	NA	NA	NA
AWR03684.1\|1974870_1976067_-	calcineurin-like phosphoesterase superfamily domain protein	NA	NA	NA	NA
AWR03168.1\|1976994_1977339_-	hypothetical protein	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AWR03331.1\|1977407_1978532_-	hypothetical protein	NA	NA	NA	NA
AWR03142.1\|1978710_1979175_-	helix-turn-helix family protein	NA	NA	NA	NA
AWR02369.1\|1979530_1980154_-	bacterial regulatory, luxR family protein	NA	NA	NA	NA
AWR02084.1\|1980175_1981288_-	histidine kinase family protein	NA	NA	NA	NA
AWR03827.1\|1981450_1982272_+	RNA pseudouridylate synthase family protein	NA	NA	NA	NA
AWR01177.1\|1982724_1984110_-	fumarate hydratase, class II	NA	NA	NA	NA
AWR03592.1\|1984305_1984701_-	putative membrane protein	NA	NA	NA	NA
AWR03266.1\|1985248_1985401_-	hypothetical protein	NA	NA	NA	NA
AWR02229.1\|1985425_1986025_-	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA
AWR01413.1\|1986183_1986654_-\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
AWR02251.1\|1986658_1987786_-	epoxyqueuosine reductase	NA	NA	NA	NA
AWR01363.1\|1987936_1988659_-	recF/RecN/SMC N terminal domain protein	G9BWD6	Planktothrix_phage	1.3e-36	42.7
AWR02687.1\|1988651_1990109_-	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA
AWR02836.1\|1990366_1991428_-	phosphotransferase system, EIIC family protein	NA	NA	NA	NA
AWR03438.1\|1992011_1992869_+\|transposase	transposase family protein	NA	NA	NA	NA
AWR01385.1\|1992868_1993330_+\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_11

2082312 : 2150157

Staphylococcus_phage(89.53%)

capsid,head,terminase,integrase,tail,coat,holin,protease,portal

attL 2102241:2102258|attR 2126715:2126732

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR02651.1\|2082312_2082552_+	putative phospholipase C domain protein	A0A1P8L6A7	Staphylococcus_phage	2.0e-26	100.0
AWR01800.1\|2083482_2083674_+	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWR02982.1\|2083725_2084076_-	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWR02124.1\|2084586_2084883_-	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.6e-49	95.9
AWR03360.1\|2085572_2086064_-	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
AWR02965.1\|2086278_2087010_-	CHAP domain protein	D2JLG5	Staphylococcus_phage	1.8e-145	99.2
AWR01376.1\|2087021_2087276_-\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AWR03450.1\|2087487_2087622_-	putative membrane protein	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
AWR03380.1\|2087772_2088546_-	enterotoxin type E	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
AWR01986.1\|2088918_2089293_-	putative membrane protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
AWR02384.1\|2089348_2089636_-	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
AWR03617.1\|2089681_2089834_-	putative phage protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
AWR03765.1\|2089826_2093609_-	phage minor structural, N-terminal region domain protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.5
AWR02119.1\|2093624_2095109_-\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AWR02121.1\|2095105_2099635_-\|tail	phage tail tape measure protein, TP901 family, core region	A0A1X9H084	Staphylococcus_phage	0.0e+00	100.0
AWR02396.1\|2099691_2099829_-	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AWR02346.1\|2099879_2100230_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AWR03614.1\|2100279_2100420_-	bacterial Ig-like domain family protein	W5R8L9	Staphylococcus_phage	1.1e-16	100.0
AWR03097.1\|2100545_2101190_-\|tail	phage major tail, phi13 family protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
AWR02623.1\|2101190_2101598_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AWR03529.1\|2101594_2101999_-	hypothetical protein	G4KNQ5	Staphylococcus_phage	2.1e-68	99.3
AWR03788.1\|2101995_2102358_-\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2102241:2102258	attL	NA	NA	NA	NA
AWR02737.1\|2102341_2102626_-\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWR02826.1\|2102615_2102900_-	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AWR01457.1\|2102919_2104065_-\|capsid	phage major capsid protein, HK97 family	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AWR01622.1\|2104088_2104826_-\|protease	clp protease family protein	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AWR01200.1\|2104809_2105997_-\|portal	phage portal protein, HK97 family	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AWR01310.1\|2106012_2107674_-	phage Terminase family protein	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AWR02691.1\|2107670_2108015_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWR02941.1\|2108144_2108444_-	HNH endonuclease family protein	G4KNP8	Staphylococcus_phage	4.6e-52	100.0
AWR01927.1\|2108675_2109011_-	phage transcriptional regulator, RinA family protein	G4KNP7	Staphylococcus_phage	1.6e-61	100.0
AWR02571.1\|2109119_2109308_-	hypothetical protein	A0A2I6PDV9	Staphylococcus_phage	4.6e-26	100.0
AWR02895.1\|2109327_2109471_-	transcriptional activator RinB family protein	A0A2I6PEM5	Staphylococcus_phage	4.2e-11	100.0
AWR02649.1\|2109467_2109674_-	hypothetical protein	S4V684	Staphylococcus_phage	2.8e-24	82.4
AWR02998.1\|2109690_2109864_-	hypothetical protein	S4SVD5	Staphylococcus_phage	3.6e-25	100.0
AWR02774.1\|2109900_2110434_-	dUTP diphosphatase family protein	A0A0H3U2T1	Staphylococcus_phage	1.6e-95	100.0
AWR02886.1\|2110426_2110669_-	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	3.7e-36	100.0
AWR03685.1\|2110658_2110895_-	hypothetical protein	A0A0H3U313	Staphylococcus_phage	5.3e-35	100.0
AWR02333.1\|2110887_2111253_-	acetyltransferase family protein	A7YGS3	Staphylococcus_virus	3.0e-61	96.7
AWR02917.1\|2111267_2111510_-	phage family protein	A0A0H3U4B0	Staphylococcus_phage	1.6e-39	98.8
AWR01322.1\|2111513_2111882_-	PVL ORF-50-like family protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
AWR01524.1\|2111894_2112299_-	endodeoxyribonuclease RusA family protein	A0A0H3U2W2	Staphylococcus_phage	1.4e-72	100.0
AWR03746.1\|2112307_2112526_-	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
AWR01469.1\|2112532_2113426_-	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AWR01157.1\|2113455_2113926_-	single-stranded DNA-binding family protein	A0EWX3	Staphylococcus_phage	7.4e-81	99.4
AWR02237.1\|2113926_2114412_-	beta-lactamase superfamily domain protein	S4SWA4	Staphylococcus_phage	9.4e-87	100.0
AWR03710.1\|2114624_2115545_-	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AWR02666.1\|2115546_2117490_-	hypothetical protein	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	98.0
AWR02558.1\|2117770_2118031_-	hypothetical protein	A0A2I6PEM2	Staphylococcus_phage	1.2e-40	93.0
AWR02059.1\|2118035_2118338_-	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	8.0e-28	62.0
AWR03699.1\|2118585_2118906_-	hypothetical protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
AWR01722.1\|2118960_2119593_+	putative phage protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
AWR02841.1\|2119607_2119748_-	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
AWR03074.1\|2119778_2119976_-	putative phi PVL orf 35-like protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
AWR03842.1\|2119991_2120747_-	phage antirepressor KilAC domain protein	A0A1P8L6G2	Staphylococcus_phage	1.3e-138	99.6
AWR02731.1\|2120803_2121343_+	putative phi PVL orf 33-like protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
AWR03172.1\|2121366_2121627_-	putative transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
AWR02253.1\|2121640_2121883_-	cro/C1-type HTH DNA-binding domain protein	Q9G038	Staphylococcus_virus	2.8e-39	100.0
AWR03784.1\|2122046_2122763_+	peptidase S24-like family protein	R9QTP6	Staphylococcus_phage	9.2e-131	100.0
AWR01630.1\|2122774_2123632_+	HIRAN domain protein	R9QTP0	Staphylococcus_phage	3.5e-161	99.6
AWR02549.1\|2123676_2123859_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
AWR03147.1\|2123958_2124423_+	putative lipoprotein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
AWR03296.1\|2124481_2125519_+\|integrase	integrase	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
AWR03677.1\|2125575_2126400_+	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	5.7e-161	99.6
AWR02290.1\|2126637_2127654_-	gamma-hemolysin component B	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
2126715:2126732	attR	NA	NA	NA	NA
AWR03287.1\|2127675_2128731_-	hypothetical protein	A0A1X9IGW5	Staphylococcus_phage	7.4e-36	34.6
AWR03046.1\|2129166_2130369_+	putative succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AWR01488.1\|2130676_2131984_+	ktr system potassium uptake protein B	NA	NA	NA	NA
AWR03737.1\|2133000_2133723_+	enterotoxin type E	A0A1X9H080	Staphylococcus_phage	2.1e-26	34.9
AWR02587.1\|2133891_2134692_-	enterotoxin type C-3	A0A097PAT7	Streptococcus_pyogenes_phage	6.1e-51	47.5
AWR02220.1\|2135478_2136039_+	putative penicillin binding protein	Q4ZBG8	Staphylococcus_virus	5.4e-62	68.1
AWR01779.1\|2136341_2136473_-	hypothetical protein	NA	NA	NA	NA
AWR03298.1\|2136917_2137622_+	toxic shock syndrome toxin-1	NA	NA	NA	NA
AWR01425.1\|2137776_2138346_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	7.9e-101	97.4
AWR01777.1\|2138342_2138684_-	putative pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	1.4e-57	99.1
AWR02763.1\|2138686_2139214_-\|coat	putative spore coat protein	A0A1W6JQH7	Staphylococcus_phage	3.5e-87	97.1
AWR03087.1\|2139264_2139483_-	hypothetical protein	NA	NA	NA	NA
AWR02416.1\|2139500_2140079_-	putative pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AWR03347.1\|2140089_2140314_-	putative saPI1 ORF8-like protein	Q4ZE66	Staphylococcus_phage	3.8e-35	97.3
AWR03562.1\|2140879_2141521_-	putative saPI1 ORF9-like protein	Q4ZE67	Staphylococcus_phage	7.2e-111	93.0
AWR03303.1\|2141517_2141898_-	putative interference protein with phage growth	Q4ZE71	Staphylococcus_phage	1.7e-67	96.8
AWR01284.1\|2142207_2143917_-	hypothetical protein	Q4ZE73	Staphylococcus_phage	1.4e-302	92.8
AWR03086.1\|2143930_2144800_-	primase C terminal 1 family protein	Q4ZE74	Staphylococcus_phage	1.5e-164	96.2
AWR01352.1\|2144864_2145191_-	hypothetical protein	Q4ZE75	Staphylococcus_phage	1.5e-48	89.8
AWR01529.1\|2145193_2145403_-	putative pathogenicity island protein	Q4ZE76	Staphylococcus_phage	2.9e-29	94.2
AWR02897.1\|2145395_2145542_-	putative membrane protein	NA	NA	NA	NA
AWR02504.1\|2145538_2145856_-	DNA binding, excisionase family domain protein	A0A1W6JQE0	Staphylococcus_phage	9.2e-51	98.1
AWR01696.1\|2145860_2146079_-	helix-turn-helix family protein	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
AWR01340.1\|2146251_2146926_+	cro/C1-type HTH DNA-binding domain protein	A0A2H4JGT9	uncultured_Caudovirales_phage	1.6e-39	45.8
AWR02068.1\|2146939_2148112_+	int protein	A0A1W6JQD3	Staphylococcus_phage	5.8e-215	96.2
AWR03552.1\|2148180_2149797_-	chaperonin GroL	A0A240F779	uncultured_virus	3.4e-157	54.7
AWR01338.1\|2149872_2150157_-	10 kDa chaperonin	A0A221S386	uncultured_virus	4.7e-14	46.2

DBSCAN-SWA_12

2460128 : 2506060

Brazilian_cedratvirus(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR02291.1\|2460128_2461388_+\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWR03234.1\|2461453_2462140_-	ribose 5-phosphate isomerase A	NA	NA	NA	NA
AWR02005.1\|2462313_2462967_+	MOSC domain protein	NA	NA	NA	NA
AWR03749.1\|2463096_2463210_-	putative membrane protein	NA	NA	NA	NA
AWR03444.1\|2463202_2464222_-	aldose 1-epimerase family protein	NA	NA	NA	NA
AWR02780.1\|2464251_2464578_-	hypothetical protein	NA	NA	NA	NA
AWR03657.1\|2464795_2466028_-	ABC-2 transporter family protein	NA	NA	NA	NA
AWR02496.1\|2466020_2466920_-	ABC transporter family protein	A0A2R8FG22	Brazilian_cedratvirus	2.1e-15	28.7
AWR03766.1\|2467150_2467771_-	hypothetical protein	NA	NA	NA	NA
AWR02507.1\|2468169_2468778_+	DNA-3-methyladenine glycosylase family protein	NA	NA	NA	NA
AWR01231.1\|2469110_2470319_+	sodium/glutamate symporter	NA	NA	NA	NA
AWR01501.1\|2470366_2471416_-	isopentenyl-diphosphate delta-isomerase, type 2	NA	NA	NA	NA
AWR03247.1\|2471446_2472394_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
AWR02338.1\|2472490_2472982_+	thioesterase-like superfamily protein	NA	NA	NA	NA
AWR03419.1\|2472978_2473398_+	hypothetical protein	NA	NA	NA	NA
AWR01407.1\|2473505_2474363_-	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWR01275.1\|2474633_2475272_+	hypothetical protein	NA	NA	NA	NA
AWR03593.1\|2475517_2477449_-	H+ antiporter-2 family protein	NA	NA	NA	NA
AWR03059.1\|2477461_2478109_-	hlyD secretion family protein	NA	NA	NA	NA
AWR02477.1\|2478229_2478784_+	bacterial regulatory, tetR family protein	NA	NA	NA	NA
AWR03282.1\|2479010_2480219_-	drug resistance transporter, Bcr/CflA subfamily protein	S4TR35	Salmonella_phage	3.9e-33	26.3
AWR01201.1\|2480487_2481870_-	membrane-associated protein TcaA	NA	NA	NA	NA
AWR01845.1\|2482109_2482565_-	HTH-type transcriptional regulator TcaR	NA	NA	NA	NA
AWR02318.1\|2482759_2483728_+	hypothetical protein	NA	NA	NA	NA
AWR01665.1\|2483958_2484624_-	ABC transporter family protein	G9BWD6	Planktothrix_phage	1.6e-36	38.8
AWR02141.1\|2484623_2485679_-	ftsX-like permease family protein	NA	NA	NA	NA
AWR03609.1\|2485814_2486489_+	response regulator	W8CYM9	Bacillus_phage	3.6e-52	45.2
AWR03148.1\|2486481_2487855_+	heme sensor protein HssS	A0A1V0SGX0	Hokovirus	2.3e-13	29.8
AWR03073.1\|2488017_2488461_+	lytTr DNA-binding domain protein	NA	NA	NA	NA
AWR02650.1\|2488457_2488913_+	hypothetical protein	NA	NA	NA	NA
AWR01997.1\|2488978_2490457_-	malate dehydrogenase	NA	NA	NA	NA
AWR01795.1\|2490837_2492436_-	transporter, lactate permease family protein	NA	NA	NA	NA
AWR01426.1\|2492752_2494426_+	Poly(glycerophosphate) glycerophosphotransferase family protein	NA	NA	NA	NA
AWR01271.1\|2494579_2495194_-	hypothetical protein	NA	NA	NA	NA
AWR02294.1\|2495507_2496023_-	acetyltransferase family protein	NA	NA	NA	NA
AWR03381.1\|2496213_2497218_+	quinone oxidoreductase, YhdH/YhfP family protein	NA	NA	NA	NA
AWR02212.1\|2497263_2497665_-	acetyltransferase domain protein	NA	NA	NA	NA
AWR01287.1\|2497700_2498735_-	ferredoxin--NADP reductase	G3MA85	Bacillus_virus	5.8e-17	26.6
AWR02511.1\|2498745_2498862_-	hypothetical protein	NA	NA	NA	NA
AWR03579.1\|2498966_2499398_-	hypothetical protein	NA	NA	NA	NA
AWR03409.1\|2499604_2500882_-	ABC-2 transporter family protein	NA	NA	NA	NA
AWR02522.1\|2501042_2501666_+	bacterial regulatory, tetR family protein	NA	NA	NA	NA
AWR03798.1\|2501711_2502656_+	corA-like Mg2+ transporter family protein	NA	NA	NA	NA
AWR01419.1\|2502740_2504183_-	PTS system, sucrose-specific IIBC component	NA	NA	NA	NA
AWR02323.1\|2504365_2504704_+	hypothetical protein	NA	NA	NA	NA
AWR01798.1\|2504747_2504978_-\|transposase	transposase family protein	NA	NA	NA	NA
AWR02847.1\|2505053_2505206_-\|transposase	transposase family protein	NA	NA	NA	NA
AWR03671.1\|2505306_2505459_-\|transposase	transposase family protein	NA	NA	NA	NA
AWR02803.1\|2505512_2505731_-\|transposase	putative transposase for ISSha1	NA	NA	NA	NA
AWR02382.1\|2505709_2506060_-\|transposase	helix-turn-helix domain of transposase ISL3 family protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029674

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11508 : 23259

Staphylococcus_phage(36.36%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR01112.1\|11508_12066_-	resolvase, N terminal domain protein	A0A0A7NPV4	Enterobacteria_phage	4.9e-31	44.9
AWR01115.1\|12360_12777_+	yolD-like family protein	A0A2H4JEH6	uncultured_Caudovirales_phage	1.0e-33	60.9
AWR01108.1\|12818_14090_-	hypothetical protein	NA	NA	NA	NA
AWR01109.1\|14158_14773_-	hypothetical protein	NA	NA	NA	NA
AWR01110.1\|14902_15577_-\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	2.2e-126	97.3
AWR01101.1\|16107_16773_+	DDE domain protein	A0A0N9RU54	Staphylococcus_phage	5.9e-108	91.6
AWR01119.1\|16931_17216_+\|transposase	transposase, Mutator family protein	A0A1X9I6M5	Streptococcus_phage	2.2e-48	100.0
AWR01123.1\|17345_18785_-	bifunctional AAC/APH	A0A1X9I6C2	Streptococcus_phage	3.8e-285	100.0
AWR01120.1\|18785_19190_-	acetyltransferase family protein	A0A0N7GFH7	Staphylococcus_phage	3.4e-74	100.0
AWR01117.1\|19234_19519_-\|transposase	transposase, Mutator family protein	A0A1X9I6M5	Streptococcus_phage	2.2e-48	100.0
AWR01114.1\|19669_20344_-\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	3.8e-126	98.2
AWR01099.1\|20381_20720_-	resolvase, N terminal domain protein	A0A1B0VBM1	Salmonella_phage	4.9e-18	43.8
AWR01118.1\|20970_21531_-	HTH-type transcriptional regulator QacR	NA	NA	NA	NA
AWR01102.1\|21714_23259_+	antiseptic resistance protein	A0A0M3UL24	Mycobacterium_phage	4.2e-32	26.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029675

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029674

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection