CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number
CP029650	Staphylococcus aureus strain AR_0471 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	1
CP029652	Staphylococcus aureus strain AR_0471 chromosome, complete genome	3 crisprs	DinG,DEDDh,cas3,WYL,csa3	1	10
CP029651	Staphylococcus aureus strain AR_0471 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23950 : 32124

Paenibacillus_phage(28.57%)

integrase,transposase

attL 28614:28630|attR 36949:36965

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ98461.1\|23950_24544_-	resolvase, N terminal domain protein	A0A0A7NPV4	Enterobacteria_phage	1.5e-41	51.1
AWQ98468.1\|24807_25188_-	methicillin resistance regulatory protein MecI	NA	NA	NA	NA
AWQ98462.1\|25177_26935_-	regulatory protein BlaR1	NA	NA	NA	NA
AWQ98443.1\|27041_27887_+	beta-lactamase	A0A1B0VBP7	Salmonella_phage	1.2e-31	34.4
AWQ98452.1\|28255_28864_+	putative transposon DNA-invertase bin3	E5FFF9	Burkholderia_phage	6.2e-11	28.5
28614:28630	attL	NA	NA	NA	NA
AWQ98465.1\|29623_30430_-\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.1e-76	54.5
AWQ98467.1\|30471_30753_-\|transposase	transposase family protein	A0A0C5AJ30	Paenibacillus_phage	6.5e-24	64.5
AWQ98456.1\|30764_31283_-	putative enterotoxin	A0A075M4C7	Staphylococcus_phage	2.1e-15	36.1
AWQ98455.1\|31392_32124_-	toxin beta-grasp domain protein	A0EX09	Staphylococcus_phage	6.9e-25	35.9
36949:36965	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029652

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CRISPR-Cas detection and classification

Crispr_ID: CP029652_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029652_2

2159191-2159275

Orphan

Consensus_repeat	Method
CAAGTTGGGGAACGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029652_2

>merge|CP029652|2|2159191-2159275|CRISPRCasFinder
CAAGTTGGGGAACGGGGCCCCAACACAGAAGGTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGAACGGGGCCCCAACA

>CP029652|2|1|2159191-2159275|CRISPRCasFinder
CAAGTTGGGGAACGGGGCCCCAACA	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG
CAAGTTGGGGAACGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029652.1\|AWQ98576.1\|2153837_2154344_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029652.1\|AWQ99333.1\|2152030_2152636_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226628
CP029652.1\|AWQ99894.1\|2159631_2159982_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029652.1\|AWR00772.1\|2161287_2161728_-\|winged-helix-DNA-binding-domain-protein	unknown	unknown	gnl\|CDD\|197670
CP029652.1\|AWQ99418.1\|2161890_2162655_+\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP029652.1\|AWR00618.1\|2157109_2157343_+\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP029652.1\|AWQ99612.1\|2156657_2157104_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029652.1\|AWQ99070.1\|2154345_2154840_-\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP029652.1\|AWR00682.1\|2157349_2157949_+\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029652.1\|AWQ98526.1\|2164668_2167836_+\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029652.1\|AWQ99671.1\|2152803_2153808_+\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029652.1\|AWR00357.1\|2156158_2156644_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029652.1\|AWR01064.1\|2168019_2168337_-\|putative-membrane-protein	unknown	unknown	unknown
CP029652.1\|AWR00071.1\|2160083_2161295_-\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|341042
CP029652.1\|AWR00700.1\|2158061_2158991_+\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
CP029652.1\|AWQ98638.1\|2168878_2169787_+\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029652.1\|AWQ99912.1\|2170440_2171304_-\|sugar-transport-family-protein	unknown	unknown	gnl\|CDD\|227309
CP029652.1\|AWQ98532.1\|2154902_2156162_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029652.1\|AWQ98563.1\|2163286_2164552_+\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029652.1\|AWR00517.1\|2168581_2168746_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029652.1\|AWQ98576.1\|2153837_2154344_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	7.75988e-66
CP029652.1\|AWQ99333.1\|2152030_2152636_+\|ABC-transporter-family-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.03488e-114
CP029652.1\|AWQ99894.1\|2159631_2159982_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029652.1\|AWR00772.1\|2161287_2161728_-\|winged-helix-DNA-binding-domain-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.07765e-15
CP029652.1\|AWQ99418.1\|2161890_2162655_+\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	5.4045e-38
CP029652.1\|AWR00618.1\|2157109_2157343_+\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	5.94445e-24
CP029652.1\|AWQ99612.1\|2156657_2157104_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
CP029652.1\|AWQ99070.1\|2154345_2154840_-\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	4.41307e-97
CP029652.1\|AWR00682.1\|2157349_2157949_+\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.35833e-67
CP029652.1\|AWQ98526.1\|2164668_2167836_+\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029652.1\|AWQ99671.1\|2152803_2153808_+\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	2.31627e-131
CP029652.1\|AWR00357.1\|2156158_2156644_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	1.12631e-49
CP029652.1\|AWR00071.1\|2160083_2161295_-\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.02108e-73
CP029652.1\|AWR00700.1\|2158061_2158991_+\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	5.95863e-143
CP029652.1\|AWQ98638.1\|2168878_2169787_+\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	3.9513e-43
CP029652.1\|AWQ99912.1\|2170440_2171304_-\|sugar-transport-family-protein	gnl\|CDD\|227309	COG4975, GlcU, Putative glucose uptake permease [Carbohydrate transport and metabolism].	1.5205e-114
CP029652.1\|AWQ98532.1\|2154902_2156162_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	5.57792e-158
CP029652.1\|AWQ98563.1\|2163286_2164552_+\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	3.74651e-143

>CP029652.1|AWR00700.1|2158061_2158991_+|molybdenum-cofactor-biosynthesis-protein-A
MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEINPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKTFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029652.1|AWR00682.1|2157349_2157949_+|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPPYWYKNINYQHDLDTLIQNL
>CP029652.1|AWR00618.1|2157109_2157343_+|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALSVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029652.1|AWQ99612.1|2156657_2157104_+|molybdopterin-synthase-catalytic-subunit
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029652.1|AWR00357.1|2156158_2156644_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDLQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVENQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLLNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLI
>CP029652.1|AWQ98532.1|2154902_2156162_+|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETTTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQQDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKSVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029652.1|AWQ99070.1|2154345_2154840_-|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIYKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQLDQ
>CP029652.1|AWQ98576.1|2153837_2154344_+|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRNFDTDKGGQCVRQLLQADNVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAKRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029652.1|AWQ99671.1|2152803_2153808_+|thiF-family-protein
MSQERYSRQILFKQIGEIGQNKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTDQPIDTKITYGDIWEGSHYSFGFSKMQRSACTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029652.1|AWQ99333.1|2152030_2152636_+|ABC-transporter-family-protein
MLKINLKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP029652.1|AWQ99894.1|2159631_2159982_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029652.1|AWR00071.1|2160083_2161295_-|sugar-(and-other)-transporter-family-protein
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNSKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLLLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGIGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029652.1|AWR00772.1|2161287_2161728_-|winged-helix-DNA-binding-domain-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHALYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP029652.1|AWQ99418.1|2161890_2162655_+|glyoxalase-like-domain-protein
MILKFDHIIHYIDRLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029652.1|AWQ98563.1|2163286_2164552_+|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSTKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKTDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029652.1|AWQ98526.1|2164668_2167836_+|swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPILAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASASNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029652.1|AWR01064.1|2168019_2168337_-|putative-membrane-protein
MQFYLILLALLYLVVSFISIFKMEVIFTRILRIIMGVLLLFVVALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIALF
>CP029652.1|AWR00517.1|2168581_2168746_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029652.1|AWQ98638.1|2168878_2169787_+|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINYIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>CP029652.1|AWQ99912.1|2170440_2171304_-|sugar-transport-family-protein
MQFLDFLIALLPALFWGSVVLINVFVGGGPYNQIRGTTLGALIVGLGLLITGFAKFNNPTVIIVGLISGALWAFGQANQLKSISLIGVSNTMPVSTGMQLVGTTLFSVIFLGEWSSMTQIIFGLIAMILLVTGVALTSLKAKNERQSDNPEFKKAMGILIVSTVGYVGFVVLGDIFGVGGTDALFFQSVGMAIGGFILSMNHKTSLKSTALNLLPGVIWGIGNLFMFYSQPKVGVATSFSLSQLLVIVSTLGGIFILGERKDRRQMTGIWAGIIIIVIAAIILGNLK

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Click the colored protein region to show detailed information

Crispr_ID: CP029652_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029652_3

2197728-2197860

Orphan

Consensus_repeat	Method
GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029652_3

>merge|CP029652|3|2197728-2197860|CRISPRCasFinder
GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGAAAAATTTTCGAGTAACTCAAAAGAAAAATATTAAAAAATCATGAGAAACCAGTGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG

>CP029652|3|2|2197728-2197860|CRISPRCasFinder
GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	AAAAATTTTCGAGTAACTCAAAAGAAAAATATTAAAAAATCATGA
GAAACCAGTGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG

Protein	Signature genes	Signature genes Name	Protein_function
CP029652.1\|AWQ98798.1\|2206186_2207233_-\|CHAP-domain-protein	unknown	unknown	gnl\|CDD\|226451
CP029652.1\|AWR00673.1\|2202203_2202629_-\|MAP-domain-protein	unknown	unknown	gnl\|CDD\|367591
CP029652.1\|AWR00044.1\|2189203_2189593_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
CP029652.1\|AWR00470.1\|2195501_2195894_+\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
CP029652.1\|AWQ98975.1\|2192340_2193201_+\|energy-coupling-factor-transporter-ATP-binding-protein-EcfA-1	unknown	unknown	gnl\|CDD\|184205
CP029652.1\|AWR00286.1\|2190628_2190997_+\|ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
CP029652.1\|AWQ98860.1\|2207222_2209070_-\|putative-membrane-protein	unknown	unknown	gnl\|CDD\|240533
CP029652.1\|AWQ98522.1\|2205589_2206180_-\|hypothetical-protein	unknown	unknown	unknown
CP029652.1\|AWQ99417.1\|2202923_2203739_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319792
CP029652.1\|AWQ98725.1\|2199423_2201088_+\|acetolactate-synthase,-catabolic	unknown	unknown	gnl\|CDD\|236312
CP029652.1\|AWQ99481.1\|2191534_2192344_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|184207
CP029652.1\|AWR01013.1\|2194001_2194805_+\|tRNA-pseudouridine(38-40)-synthase	unknown	unknown	gnl\|CDD\|234577
CP029652.1\|AWQ98583.1\|2204565_2205069_-\|helix-turn-helix-domain-protein	unknown	unknown	gnl\|CDD\|225382
CP029652.1\|AWQ98816.1\|2193190_2193997_+\|cobalt-transport-family-protein	unknown	unknown	gnl\|CDD\|223692
CP029652.1\|AWR00397.1\|2201124_2201829_+\|alpha-acetolactate-decarboxylase	unknown	unknown	gnl\|CDD\|226058
CP029652.1\|AWQ98852.1\|2196242_2197679_+\|divergent-AAA-domain-protein	unknown	unknown	gnl\|CDD\|225420
CP029652.1\|AWQ99146.1\|2195044_2195482_+\|ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703
CP029652.1\|AWQ99340.1\|2205177_2205534_-\|putative-lipoprotein	unknown	unknown	gnl\|CDD\|338858
CP029652.1\|AWQ99650.1\|2204048_2204402_-\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|225382
CP029652.1\|AWR01024.1\|2189667_2190612_+\|DNA-directed-RNA-polymerase,-alpha-subunit	unknown	unknown	gnl\|CDD\|235359

Protein	Function_ID	Function_description	E-value
CP029652.1\|AWQ98798.1\|2206186_2207233_-\|CHAP-domain-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.72765e-22
CP029652.1\|AWR00673.1\|2202203_2202629_-\|MAP-domain-protein	gnl\|CDD\|367591	pfam03642, MAP, MAP domain. This presumed 110 amino acid residue domain is found in multiple copies in MAP (MHC class II analogue protein). The protein has been found in a wide range of extracellular matrix proteins.	2.23368e-34
CP029652.1\|AWR00044.1\|2189203_2189593_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.01588e-89
CP029652.1\|AWR00470.1\|2195501_2195894_+\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	1.87986e-83
CP029652.1\|AWQ98975.1\|2192340_2193201_+\|energy-coupling-factor-transporter-ATP-binding-protein-EcfA-1	gnl\|CDD\|184205	PRK13646, cbiO, energy-coupling factor transporter ATPase.	0
CP029652.1\|AWR00286.1\|2190628_2190997_+\|ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	2.70058e-62
CP029652.1\|AWQ98860.1\|2207222_2209070_-\|putative-membrane-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	4.79973e-06
CP029652.1\|AWQ99417.1\|2202923_2203739_+\|hypothetical-protein	gnl\|CDD\|319792	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP. Sucrose-phosphatase (SPP; EC 3.1.3.24) catalyzes the dephosphorylation of sucrose-6(F)-phosphate (Suc6P)-the final step in the pathway of sucrose biosynthesis in plants and cyanobacteria. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.68683e-98
CP029652.1\|AWQ98725.1\|2199423_2201088_+\|acetolactate-synthase,-catabolic	gnl\|CDD\|236312	PRK08617, PRK08617, acetolactate synthase AlsS.	0
CP029652.1\|AWQ99481.1\|2191534_2192344_+\|ABC-transporter-family-protein	gnl\|CDD\|184207	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional.	0
CP029652.1\|AWR01013.1\|2194001_2194805_+\|tRNA-pseudouridine(38-40)-synthase	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	3.32017e-120
CP029652.1\|AWQ98583.1\|2204565_2205069_-\|helix-turn-helix-domain-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.373e-09
CP029652.1\|AWQ98816.1\|2193190_2193997_+\|cobalt-transport-family-protein	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	5.04502e-49
CP029652.1\|AWR00397.1\|2201124_2201829_+\|alpha-acetolactate-decarboxylase	gnl\|CDD\|226058	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	1.05414e-118
CP029652.1\|AWQ98852.1\|2196242_2197679_+\|divergent-AAA-domain-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	4.72936e-64
CP029652.1\|AWQ99146.1\|2195044_2195482_+\|ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	4.91074e-100
CP029652.1\|AWQ99340.1\|2205177_2205534_-\|putative-lipoprotein	gnl\|CDD\|338858	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.	7.17536e-05
CP029652.1\|AWQ99650.1\|2204048_2204402_-\|integrase-core-domain-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.07531e-36
CP029652.1\|AWR01024.1\|2189667_2190612_+\|DNA-directed-RNA-polymerase,-alpha-subunit	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.89947e-175

>CP029652.1|AWQ98852.1|2196242_2197679_+|divergent-AAA-domain-protein
MTSSKYIEYLQTEVEGQLLDRKRASINPKDVAQHISAFANAEGGKLVIGIEDNGEISGFNHSKAKKKEVYIEAPFEHLYRIPKYTYEIIEVKKRDGTMDEILVFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIEDVNEELVDEFKQLLNTNVDNEKLLKARGFMREGKLTVAGLLLFSNNINVYLPGARIRFMRYEGTKEESGTRLNIVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPEYPEFAWFEGMINSIVHRRYDNQGDHIRIKMFDDRLEISSPGALPASVTLENIKEERYSRNPKLAAALTQYKWVRESNEGVGRIFDEMKEYFLDDPVYSEPNNSSVQLALKNNIIARKKRETGRVSNIITPELFESLNEQQELIVRHLYNQGELTASKIANIIQRSVPTARKRLKELEEMNIISTHGSSKNDPKRTYYLLGFE
>CP029652.1|AWR00470.1|2195501_2195894_+|30S-ribosomal-protein-S9
MAQVEYRGTGRRKNSVARVRLVPGEGNITVNNRDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKAARRSPQFSKR
>CP029652.1|AWQ99146.1|2195044_2195482_+|ribosomal-protein-L13
MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG
>CP029652.1|AWR01013.1|2194001_2194805_+|tRNA-pseudouridine(38-40)-synthase
MRILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYFHFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGFDYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTAPAEGLYLEKIYLDENELLKDFGNDIKIHRKKSLQND
>CP029652.1|AWQ98816.1|2193190_2193997_+|cobalt-transport-family-protein
MKNKLIIGRYLPNDSYVHHLDPRAKLMFVFLFIILIFVCHSPLTYLWVFALILFFMRLAKIQLWFLIKGLTPIFFFLIFTLMMHIFLTKGGYVLVEWHGITIETNGILEGLYISLRLIGIVMIATIMTLSTSPIDLTDAFERLLAPLKMFKLPVHQLSMIMSIALRFIPTLMDELDKIILAQKSRGSEISSGNIATRIKSFIPLLVPLFISAFQRAEELAVAMEVRGYDANVQRTSYRQLKWQLRDTLSLIMIIPIAIILFVLKYSGV
>CP029652.1|AWQ98975.1|2192340_2193201_+|energy-coupling-factor-transporter-ATP-binding-protein-EcfA-1
MSIRFNDVSYTYQQGTPYEHQAIHDINTEFEQGKYYAIVGQTGSGKSTLIQNINALIKPTSGTVTIDDVTVTHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREMIFGPKNFKMDLDEAKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSVLAMNPDIIVVDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILISHDMNEVARYADEVIVMKEGSIVSQTSPKELFKEKEKLAGWHIGLPDIVQLQYDFEQKHQTKLKDIALTEEAFVSLYKEWQHEK
>CP029652.1|AWQ99481.1|2191534_2192344_+|ABC-transporter-family-protein
MEDKNSVIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIENVKSGEIFYNNQTITDDNFEKLRKDIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPHDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIASVLALNPSVIILDEATSMLDPDARQNLLDLVRIVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTAIEIFDHAEELTTIGLDLPFPIKINQMLGHQTSFLTYEGLVNQL
>CP029652.1|AWR00286.1|2190628_2190997_+|ribosomal-protein-L17
MGYRKLGRTSDQRKAMLRDLATSLIISERIETTEARAKEVRSVVEKLITLGKKGDLASRRNAAKTLRNVEILNEDETTQTALQKLFGEIAERYTERQGGYTRILKQGPRRGDGAESVIIELV
>CP029652.1|AWR01024.1|2189667_2190612_+|DNA-directed-RNA-polymerase,-alpha-subunit
MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEGVLHEFSAVDNVVEDVSTIIMNIKQLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEILNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED
>CP029652.1|AWR00044.1|2189203_2189593_+|30S-ribosomal-protein-S11
MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTPFAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNGCRPPKRRRV
>CP029652.1|AWQ98725.1|2199423_2201088_+|acetolactate-synthase,-catabolic
MTDKKYTAADIVIDTLKNNGVEYVFGIPGAKIDYLFNALIDDGPELIVTRHEQNAAMMAQGIGRLTGKPGIVLVTSGPGVSNLTTGLLTATSEGDPVLALGGQVKRNDLLRLTHQSIDNAALLKYSSKYSEEVQDPESLSEVMTNAIRIATSGKNGASFISIPQDVISSPVESKAISLCQKPNLGVPSEQDINDVIEAIKNASFPVLLAGMRSSSADETNAIRKLVERTNLPVVETFQGAGVISRELENHFFGRVGLFRNQVGDELLRKSDLVVTIGYDPIEYEASNWNKELETQIINIDEVQAEITNYMQPKKELIGNIAKTIEMISEKVDEPFINQQHLDELEQLRTHIDEETGIKATHEEGILHPVEIIESMQKVLTDDTTVTVDVGSHYIWMARNFRSYNPRHLLFSNGMQTLGVALPWAISAALVRPNTQVVSVAGDGGFLFSSQDLETAVRKNLNIIQLIWNDGKYNMVEFQEEMKYKRSSGVDFGPVDFVKYAESFGAKGLRVTNQEELEAAIKEGYETDGPVLIDIPVNYKDNIKLSTNMLPDVFN
>CP029652.1|AWR00397.1|2201124_2201829_+|alpha-acetolactate-decarboxylase
MTNVLYQHGTLGTLMAGLLKGTASINELLQHGDLGIATLTGSNGEVIFLDGKAYHANEHKEFVELKGDELTPYATVTKFVADTSYETKDKSSEAVFAEIKEKMLSENLFSAVKISGLFKKMHIRMMPAQEPPYTRLIDSARRQPEQTETYVKGSVVGFFTPELFHGIGSAGFHVHFANDDRNFGGHVLDFEVEDVKVEIQNIETFEQHFPIHDEDFTNANIDYKDISDEIREAE
>CP029652.1|AWR00673.1|2202203_2202629_-|MAP-domain-protein
MKLKSFVTATLALGLLSTVGAALPSHEASADSNNGYKEMTMDGYHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNIKKNDDAKNLIDPSTIKQIQIVVK
>CP029652.1|AWQ99417.1|2202923_2203739_+|hypothetical-protein
MSKRLLLFDFDETYFKHNTNEEDLSHLREMEKLLEKLTNNNEVMTAVLTGSTFQSVMDKMDQVNMTFKPLHIFSDLSSKMFTWNNGEYVESETYKKKVLSEPFLFEDIEDILRHISAQYNVEFIPQRAFEGNETHYNFYFHSIGNHNKDRRILESLVRYANDQNYTARFSRSNPLAGDPENAYDIDFTPSNAGKLYATQFLMKKYNIPVKSILGFGDSGNDEAYLSYLEHAYLMSNSRDEALKQKFRLTKYPYYQGITLHVKEFVEGKYDY
>CP029652.1|AWQ99650.1|2204048_2204402_-|integrase-core-domain-protein
MKPLLPKSITMDRGKEFALFEQIEDELNCSIYFSDLGCPYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQINARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
>CP029652.1|AWQ98583.1|2204565_2205069_-|helix-turn-helix-domain-protein
MKKRKKRKELDYKTRLAIAKYLNDGLNIIQISKILGRDDAVLYREVNKRSVDGVYNPLLAEEDAIKSRSISDEQVAKRRRLNDETKAYIEEKLSLKWSPRQIASQIEKDTGYYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVIKYRLKKY
>CP029652.1|AWQ99340.1|2205177_2205534_-|putative-lipoprotein
MRRWFVLILGLVILLSACGQKYDKEIDEVTKLEKESIQDVKNTKKYKNVERSKSYYKIYNDGEVIIMTYMPFKDSNTKVSRVYKINQTSDKYEEDSNIDAEKFEKDNKPVYEENNMKK
>CP029652.1|AWQ98522.1|2205589_2206180_-|hypothetical-protein
MKQKIIMFTLVTVILFCAVLIGYQIPKQQVKMKQNQIEDLQEEQRILRDKNGELNKLVKRQSKTVISDEEKQIREVSSNFVKQMFEMKKDSSFKSKAPQIKPLVTKDYYDTLFKDSKDKYDLYDDITVNNIHVYFDTYDPKKDSYKVFVQFDERIETDGDDKIEHRQTSAQLDLVRTAEGWRIDNLKRFNLKPLGR
>CP029652.1|AWQ98798.1|2206186_2207233_-|CHAP-domain-protein
MVNKKDIAKKVIGKTPIGVKLKLVKVIIILCVVAFFTFPVIVMFLLAPDSNKDKDDAGCTVSGGNVSANGIDKFNENAKGGKLEGKGKEIQKIAEKNKVPVNIFMAIIASESQWGKGENATRQNNPLSVMGSKSIHDSTYPTIEDGLNAGAKNLYDVYISKGLDTPKKIGPKYAPVGASNDPNNMNARWIPTVEKIMKDLGGSEAKTSCSNGKGKSIKFNGKLPHWSNDDPGKGNLYTAGQCTWYAYGMRQKMGKPVSTYWHDAHKWNDRAKAEGYKVDKNPEPGALFIAEQGAGGHDGHYGHVAVVIGVSDGGKTFRITEMNWEGAFKVNERTLKMTDGYSFIHDKE
>CP029652.1|AWQ98860.1|2207222_2209070_-|putative-membrane-protein
MKHKSVYLLCFLILPILLLTSVSAYAVSNPVGEPSHAVKPKIEKYDLSHYRSIYSEKGDWNPFGQEEISRQINNVSDFFFSMTKILAGVTDYAIENLFQLDVINDFADKIGDFVGDIYQKLLSNLALTLFIIVCFNAFIIFSVQGNAREALKRAFLIMCLIGFGVGILANAGNIIRGTNNIGKDLNNIIMNSTSSIDGNIDYIHENSGMNHIRNQLFDMTIYRTYLVMNYGTVDEKEIKAKGKDRIDNILKLDYDKKSEKELDDIVKDEVEKKNNKYMTQGYVFQKLAISVIGFIITLFMSIVFLSISFAKLIFSTFALFLFLFLVFSWIVSFIPGFELSVFSAFAKTLGYIILSACMTFLFVIVGLCIKLANSFIEPDSQNAYFLNSIFIIVILFVMYKKRAQIINFVSRGNISFSPSAIGAGVMNRTQERFNKIRHEQAQNKKAKRENQRDEPAPPLQNDNDLRRRQQDKPMPLFINKDNQKNGNKRREQQESMNGNDVKSASVESNANDYSKQPQKASQQEHQVRETRQRKDIQRSPQVVNQPLNNENHSINRKEQKSVQTAYDTDVQKRQIQNATQNQQSRQSGNRNQPITRNSQSKDRLKEQKDINKHGK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029652_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029652_4

2290135-2290223

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP029652_4

>merge|CP029652|4|2290135-2290223|CRISPRCasFinder
TGCATAAGAGCCCCTAACAACTAAAGTTTAAGAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTGTAA

>CP029652|4|3|2290135-2290223|CRISPRCasFinder
TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	AGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTTGTAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029652.1\|AWQ99654.1\|2298462_2298906_+\|DNA-protection-during-starvation-protein-2	unknown	unknown	gnl\|CDD\|223854
CP029652.1\|AWR01004.1\|2299026_2299737_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP029652.1\|AWQ99486.1\|2281632_2283765_-\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	unknown	unknown	gnl\|CDD\|226234
CP029652.1\|AWQ98530.1\|2294145_2295084_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP029652.1\|AWR00784.1\|2280080_2281187_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP029652.1\|AWQ98630.1\|2292572_2292893_-\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP029652.1\|AWR00588.1\|2288068_2288851_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224044
CP029652.1\|AWQ99109.1\|2283799_2285350_-\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP029652.1\|AWQ98525.1\|2295114_2295345_+\|putative-membrane-protein	unknown	unknown	unknown
CP029652.1\|AWQ99093.1\|2281186_2281621_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP029652.1\|AWQ99559.1\|2288918_2289776_+\|HAD-hydrolase,-IIB-family-protein	unknown	unknown	gnl\|CDD\|223635
CP029652.1\|AWR00326.1\|2290236_2291328_-\|putative-membrane-protein	unknown	unknown	unknown
CP029652.1\|AWQ99520.1\|2297849_2298263_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP029652.1\|AWR00742.1\|2270760_2272116_+\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
CP029652.1\|AWQ99570.1\|2272399_2277730_+\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	unknown	unknown	gnl\|CDD\|275089
CP029652.1\|AWQ99085.1\|2293044_2293710_+\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|187554
CP029652.1\|AWR00821.1\|2296018_2297392_+\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP029652.1\|AWQ99701.1\|2291593_2292571_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP029652.1\|AWQ98945.1\|2286030_2287836_+\|glutamine-fructose-6-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234729
CP029652.1\|AWR00176.1\|2277841_2279758_+\|LPXTG-cell-wall-anchor-domain-protein	unknown	unknown	gnl\|CDD\|336743

Protein	Function_ID	Function_description	E-value
CP029652.1\|AWR01004.1\|2299026_2299737_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP029652.1\|AWQ99486.1\|2281632_2283765_-\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	8.3983e-66
CP029652.1\|AWQ98530.1\|2294145_2295084_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP029652.1\|AWR00784.1\|2280080_2281187_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP029652.1\|AWQ98630.1\|2292572_2292893_-\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP029652.1\|AWR00588.1\|2288068_2288851_+\|ABC-transporter-family-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	5.2134e-106
CP029652.1\|AWQ99109.1\|2283799_2285350_-\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP029652.1\|AWQ99654.1\|2298462_2298906_+\|DNA-protection-during-starvation-protein-2	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.87929e-68
CP029652.1\|AWQ99093.1\|2281186_2281621_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	1.48113e-62
CP029652.1\|AWQ99559.1\|2288918_2289776_+\|HAD-hydrolase,-IIB-family-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	8.6913e-60
CP029652.1\|AWQ99520.1\|2297849_2298263_+\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.9904e-45
CP029652.1\|AWR00742.1\|2270760_2272116_+\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
CP029652.1\|AWQ99570.1\|2272399_2277730_+\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	3.14212e-111
CP029652.1\|AWQ99085.1\|2293044_2293710_+\|NADH(P)-binding-family-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.27205e-48
CP029652.1\|AWR00821.1\|2296018_2297392_+\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP029652.1\|AWQ99701.1\|2291593_2292571_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.21832e-107
CP029652.1\|AWQ98945.1\|2286030_2287836_+\|glutamine-fructose-6-phosphate-transaminase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029652.1\|AWR00176.1\|2277841_2279758_+\|LPXTG-cell-wall-anchor-domain-protein	gnl\|CDD\|336743	pfam07564, DUF1542, Domain of Unknown Function (DUF1542). This domain is found in several cell surface proteins. Some are involved in antibiotic resistance and/or cellular adhesion.	2.12878e-07

>CP029652.1|AWQ99559.1|2288918_2289776_+|HAD-hydrolase,-IIB-family-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLIEKGYKVFLATGRSHSEIHQLVPQVFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRNELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGINQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP029652.1|AWR00588.1|2288068_2288851_+|ABC-transporter-family-protein
MLIQLEQVGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDKVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSYFFRKKVAVQRWNNRFSMAMLE
>CP029652.1|AWQ98945.1|2286030_2287836_+|glutamine-fructose-6-phosphate-transaminase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP029652.1|AWQ99109.1|2283799_2285350_-|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFFGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTKEPKQDLEAATAQMETTKGKKSSVASKLVSSDKDAEVEANASTEAKTNADVTSTLEDDPEALLDNYNTEDVDAHNYNNIDHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP029652.1|AWQ99486.1|2281632_2283765_-|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGEESDLNDLKQSIAKHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSVNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDSWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIECITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDQSSNMIDKNDVHVETKDIDGNTSFENEQTSYLTSIFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQSDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP029652.1|AWQ99093.1|2281186_2281621_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEQAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP029652.1|AWR00784.1|2280080_2281187_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHDLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP029652.1|AWR00176.1|2277841_2279758_+|LPXTG-cell-wall-anchor-domain-protein
MDNGDVDDALTQGKATIDAVQVDASVKPKANQAIEAKAEETKESIDQSDQLTAEEKTEALATIKQITDQAKQGITDAATTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDSDATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVDELQNVTIPAIEAIVPQKDPNANDTNSGSDNNDATANSNTNATPENTGEPNVTESTDNANADTSSTTTNNHNDSATGETTGTSTNNSSTDDANDKPTANNNSSVDASTDNSATGNGTTDKPAVELTNNGTTDKPATTESTETTSTADRKDNASVNASNQNAEVNNSAESQPINGKVAQPKSENKAKVEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTSNQTDAGQLKSETNVASNEADKSPSKADTAVSNKPSTSASSETKDKATSTEDSQKADMATADTKDNQAAIGATADVNNKATQNDGANASPVTVSNGSHSMHHDMLKVTNTDKHEAKATSAQQGKENKAKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>CP029652.1|AWQ99570.1|2272399_2277730_+|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISINPTTASAAEQNQPAQNQPAQPADASAQPNANAGAQANPTAQPAAPANQGGQADPAANQGGQATPAAGTTQPAAGTTQPAGQGNQADPNNAVQAQPGNQAAPANQAGQGNNQATPNNAAPANQTQPANAPAAAQPAAPVAANAQPQDPNANNTGEGSINTTLTFDDPAISTNDNRQDPTVTVTDHVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQARGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFNTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDDSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTAQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTAPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINKAKVSGVKAIEATTTAQELERVKNEEIFKIENITDSTQTKMDAYKEVKQAATARKAQNATVSNATDEEVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQARVKPAADREVDNAYNTRKQEIQNSNASTTEEKEAAYTQLDAKKQEARTNLDAANTNSAVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNAAANTDVDNAKATNEATIAAITPDANVKSTAKQAIADKVQAQETAIDANNGATTEEKNAAKQQVQTEKTTADAAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAIATKANERKAAIAQTQDITAEEIEAANANVDNAVTEANSHIEAANSQNEVDQAKTTGESSIDQVTPTVNKKATARNEITTALNNKLQEIQATPDATDEEKQEADLEANTENAKANHAITAATTNAEVDDAKANAEVAINAVTPKVMKKQAAKDEIDQLQAVQTAIINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDNNGVDTAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTDATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVTDIQGITADTTIKDVAKGELTAKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLNEMQNKITEILNDNTTTNEEKGKDIGPVRAAYEEGLNNINTSTTTGDVTTAKDAAVQKVQQLHANPVKKPSGKTALDQAAADKKTQIEQTPNASQQEINDAKQEVDTVLNQAKTNIDQSSTDDYVDAAVRDGKAKINAVKTFSEYKKDALAKIADAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYAD
>CP029652.1|AWR00742.1|2270760_2272116_+|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>CP029652.1|AWR00326.1|2290236_2291328_-|putative-membrane-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPGDAYLKVIAVLLIAAVVSLFVLAQIFIGITNVMKRAMSHEKVKFTNLFIAFKKGNYLKSVLIGLVSVAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLVGIAITTQSIIIIVVLLIKAIITWLLLIPVFNIMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKAADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP029652.1|AWQ99701.1|2291593_2292571_-|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNATATKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP029652.1|AWQ98630.1|2292572_2292893_-|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP029652.1|AWQ99085.1|2293044_2293710_+|NADH(P)-binding-family-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>CP029652.1|AWQ98530.1|2294145_2295084_+|mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP029652.1|AWQ98525.1|2295114_2295345_+|putative-membrane-protein
MKQFLYIALVCGVIAGLGAFVHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP029652.1|AWR00821.1|2296018_2297392_+|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP029652.1|AWQ99520.1|2297849_2298263_+|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIQLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP029652.1|AWQ99654.1|2298462_2298906_+|DNA-protection-during-starvation-protein-2
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLEKAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP029652.1|AWR01004.1|2299026_2299737_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029652_2	2.1\|2159216\|35\|CP029652\|CRISPRCasFinder	2159216-2159250	35	CP029652.1	522910-522944	1	0.971
CP029652_2	2.1\|2159216\|35\|CP029652\|CRISPRCasFinder	2159216-2159250	35	CP029652.1	623348-623382	1	0.971
CP029652_2	2.1\|2159216\|35\|CP029652\|CRISPRCasFinder	2159216-2159250	35	CP029652.1	828213-828247	1	0.971
CP029652_2	2.1\|2159216\|35\|CP029652\|CRISPRCasFinder	2159216-2159250	35	CP029652.1	2170022-2170056	1	0.971
CP029652_2	2.1\|2159216\|35\|CP029652\|CRISPRCasFinder	2159216-2159250	35	CP029652.1	2393597-2393631	1	0.971
CP029652_2	2.1\|2159216\|35\|CP029652\|CRISPRCasFinder	2159216-2159250	35	CP029652.1	736355-736389	2	0.943
CP029652_2	2.1\|2159216\|35\|CP029652\|CRISPRCasFinder	2159216-2159250	35	CP029652.1	2519118-2519152	2	0.943

1. spacer 2.1|2159216|35|CP029652|CRISPRCasFinder matches to position: 522910-522944, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

2. spacer 2.1|2159216|35|CP029652|CRISPRCasFinder matches to position: 623348-623382, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

3. spacer 2.1|2159216|35|CP029652|CRISPRCasFinder matches to position: 828213-828247, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

4. spacer 2.1|2159216|35|CP029652|CRISPRCasFinder matches to position: 2170022-2170056, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatgtg	Protospacer
****** ****************************

5. spacer 2.1|2159216|35|CP029652|CRISPRCasFinder matches to position: 2393597-2393631, mismatch: 1, identity: 0.971

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaaggtgacgaaaagtcagcatacaataatgtg	Protospacer
********************** ************

6. spacer 2.1|2159216|35|CP029652|CRISPRCasFinder matches to position: 736355-736389, mismatch: 2, identity: 0.943

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatgtg	Protospacer
****** **.*************************

7. spacer 2.1|2159216|35|CP029652|CRISPRCasFinder matches to position: 2519118-2519152, mismatch: 2, identity: 0.943

cagaaggtgacgaaaagtcagcttacaataatgtg	CRISPR spacer
cagaagctgacgaaaagtcagcttacgataatgtg	Protospacer
****** *******************.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

61850 : 70162

Caulobacter_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ99472.1\|61850_63650_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.3e-53	36.0
AWQ99059.1\|63873_64980_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AWQ99564.1\|65110_65788_+	hypothetical protein	NA	NA	NA	NA
AWQ99744.1\|65790_66891_+	NIF3 family protein	A0A1S5V250	Saudi_moumouvirus	3.0e-08	30.6
AWQ99890.1\|67004_68351_+	helicase domain protein	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AWQ99110.1\|68360_69251_+	putative endonuclease 4	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AWR00874.1\|69376_70162_+	ATPase associated with various cellular activities family protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_2

343412 : 357867

Staphylococcus_phage(55.0%)

integrase,terminase,portal,head

attL 340560:340577|attR 364028:364045

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
340560:340577	attL	NA	NA	NA	NA
AWQ99677.1\|343412_344894_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZE35	Staphylococcus_virus	3.7e-110	61.9
AWR00705.1\|344883_346332_-\|portal	phage portal protein, SPP1 family	Q4ZE36	Staphylococcus_virus	1.9e-196	69.6
AWR00641.1\|346344_347619_-\|terminase	phage terminase, large subunit, PBSX family	Q4ZE37	Staphylococcus_virus	4.2e-195	76.4
AWQ98803.1\|347605_348034_-	homeo-like domain protein	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AWQ99144.1\|348210_348675_-	sigma-70, region 4 family protein	R9TMH4	Paenibacillus_phage	2.4e-07	27.7
AWR00360.1\|348717_348951_-	putative membrane protein	NA	NA	NA	NA
AWQ98783.1\|348951_349416_-	putative small GTP-binding domain protein	C9E2P0	Enterococcus_phage	2.5e-20	43.7
AWR00292.1\|349657_350188_-	mazG nucleotide pyrophosphohydrolase domain protein	A0A1P8VVP1	Streptococcus_phage	8.0e-23	39.1
AWQ99748.1\|350180_350492_-	hypothetical protein	NA	NA	NA	NA
AWQ99622.1\|350497_350656_-	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	7.9e-19	90.4
AWQ98788.1\|350670_350961_-	phage family protein	A0A223LIA9	Staphylococcus_phage	5.5e-18	58.1
AWQ98757.1\|350961_351900_-	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	4.8e-47	48.1
AWQ98671.1\|351913_352462_-	putative single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	4.9e-92	92.4
AWR00324.1\|352488_353268_-	bacterial dnaA family protein	A0A1W6JPW0	Staphylococcus_phage	9.3e-129	88.8
AWR01077.1\|353268_353805_-	glycosyl hydrolases 17 family protein	A0A0H3U480	Staphylococcus_phage	1.1e-75	81.4
AWR01089.1\|353809_354076_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.9e-18	53.6
AWR00943.1\|354065_354383_-	hypothetical protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AWQ99053.1\|354469_354631_-	hypothetical protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AWQ99867.1\|354801_355083_-	hypothetical protein	NA	NA	NA	NA
AWR01068.1\|355130_355343_-	cro/C1-type HTH DNA-binding domain protein	A0A2I6PDH8	Staphylococcus_phage	6.8e-26	83.3
AWQ99370.1\|355504_355870_+	helix-turn-helix family protein	R9QTP6	Staphylococcus_phage	1.8e-21	47.9
AWR00967.1\|356016_356400_+	hypothetical protein	NA	NA	NA	NA
AWR00460.1\|356411_357107_+	host cell surface-exposed lipofamily protein	A0A2H4J5B8	uncultured_Caudovirales_phage	2.1e-07	51.5
AWQ99704.1\|357159_357867_+\|integrase	phage integrase family protein	V9QKF1	Oenococcus_phage	4.7e-10	26.2
364028:364045	attR	NA	NA	NA	NA

DBSCAN-SWA_3

613227 : 621700

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ99790.1\|613227_613794_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-29	39.6
AWQ98634.1\|613796_614825_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.2e-62	41.7
AWQ99413.1\|614817_616302_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AWR01074.1\|616280_618470_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.5e-141	39.8
AWQ99841.1\|618462_619134_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWQ98759.1\|619135_619399_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWQ99680.1\|619398_620103_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	4.0e-46	41.2
AWR00581.1\|620106_621231_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWQ98553.1\|621217_621700_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7

DBSCAN-SWA_4

774286 : 820116

Staphylococcus_phage(69.57%)

tail,head,integrase,terminase,portal,holin

attL 767385:767400|attR 824792:824807

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
767385:767400	attL	NA	NA	NA	NA
AWQ98733.1\|774286_774472_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AWQ98814.1\|774654_774783_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
AWQ98681.1\|775049_776495_-	CHAP domain protein	Q08JW9	Staphylococcus_phage	1.1e-292	99.0
AWQ99195.1\|776475_776913_-\|holin	holin, phage phi LC3 family	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
AWQ99009.1\|776969_777365_-	hypothetical protein	Q4ZBP5	Staphylococcus_phage	2.7e-68	100.0
AWR00884.1\|777369_778608_-	hypothetical protein	A0A0F6N3G7	Staphylococcus_phage	3.2e-208	98.3
AWR00671.1\|778620_780495_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	A0A0H4IPY7	Staphylococcus_phage	0.0e+00	99.0
AWQ99821.1\|780631_780931_-	hypothetical protein	A0A0F6N3M6	Staphylococcus_phage	9.9e-47	100.0
AWR00362.1\|780970_781144_-	hypothetical protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
AWR00798.1\|781147_781525_-	hypothetical protein	Q9FZY7	Staphylococcus_virus	1.2e-60	100.0
AWQ99911.1\|781524_783348_-	hypothetical protein	Q4ZBH7	Staphylococcus_virus	8.7e-311	97.9
AWR00809.1\|783347_785246_-	putative minor structural protein	Q4ZBX7	Staphylococcus_virus	0.0e+00	98.6
AWQ99625.1\|785258_787145_-\|tail	prophage endopeptidase tail family protein	A7YGW3	Staphylococcus_virus	0.0e+00	100.0
AWR00667.1\|787155_788091_-\|tail	phage tail family protein	Q4ZBI0	Staphylococcus_virus	8.2e-180	100.0
AWR00949.1\|788105_791075_-	TMP repeat family protein	Q4ZBI1	Staphylococcus_virus	1.0e-263	99.8
AWR00179.1\|791077_791419_-	hypothetical protein	A0A2H4PQL5	Staphylococcus_phage	9.3e-41	76.1
AWQ99292.1\|791439_791934_-	phage family protein	A0A0H4IPX9	Staphylococcus_phage	5.6e-87	99.4
AWQ99183.1\|791995_792556_-\|tail	putative tail protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
AWQ98983.1\|792542_792980_-	hypothetical protein	Q4ZBI5	Staphylococcus_virus	2.1e-77	100.0
AWR00495.1\|792992_793343_-	hypothetical protein	A0A0E3XCY8	Staphylococcus_phage	3.6e-64	100.0
AWQ98555.1\|793392_793728_-\|head,tail	putative head-tail adaptor	Q4ZAA0	Staphylococcus_virus	2.6e-59	98.2
AWR00313.1\|793720_794035_-\|head,tail	phage gp6-like head-tail connector family protein	Q4ZBR3	Staphylococcus_phage	2.6e-53	100.0
AWQ98922.1\|794034_794361_-	rho termination factor, N-terminal domain protein	Q4ZAA2	Staphylococcus_virus	8.3e-47	94.4
AWQ99950.1\|794377_795190_-	hypothetical protein	A0A2H4PQL1	Staphylococcus_phage	3.1e-143	98.9
AWQ99464.1\|795206_795797_-	phage minor structural GP20 family protein	A0A2H4PQL3	Staphylococcus_phage	2.4e-76	98.5
AWQ99868.1\|795901_796108_-	hypothetical protein	A0A0N9BB04	Staphylococcus_phage	3.2e-28	100.0
AWQ99825.1\|796109_796718_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZBZ6	Staphylococcus_virus	6.4e-109	97.5
AWR00018.1\|797031_798450_-\|portal	phage portal protein, SPP1 family	A0A0E3T8M2	Staphylococcus_phage	4.0e-271	98.7
AWQ98873.1\|798463_799672_-\|terminase	phage terminase, large subunit, PBSX family	R4IG95	Staphylococcus_phage	1.8e-235	99.8
AWQ98544.1\|799664_800159_-\|terminase	terminase small subunit	R4IH30	Staphylococcus_phage	1.1e-74	100.0
AWR00482.1\|800513_800915_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
AWQ99532.1\|800915_801089_-	transcriptional activator RinB family protein	A0A0H4ISR0	Staphylococcus_phage	9.2e-21	94.7
AWR00364.1\|801085_801292_-	hypothetical protein	A0A0H4IPW6	Staphylococcus_phage	4.5e-30	100.0
AWR00793.1\|801288_801534_-	hypothetical protein	A0A0H4ITX2	Staphylococcus_phage	2.0e-37	100.0
AWR00213.1\|801570_802104_-	dUTP diphosphatase family protein	Q4ZCN7	Staphylococcus_virus	3.5e-95	99.4
AWR00490.1\|802096_802345_-	hypothetical protein	A0A2H4PQK1	Staphylococcus_phage	4.5e-37	95.1
AWR00185.1\|802337_802613_-	hypothetical protein	Q4ZBD3	Staphylococcus_virus	2.3e-45	100.0
AWR00383.1\|802612_803017_-	hypothetical protein	A0A0H4IPW3	Staphylococcus_phage	1.6e-71	100.0
AWQ99433.1\|803030_803273_-	phage family protein	A0A1P8L6E3	Staphylococcus_phage	1.1e-40	98.8
AWR00322.1\|803276_803633_-	PVL ORF-50-like family protein	A0A0F6N3E3	Staphylococcus_phage	6.5e-61	100.0
AWR00388.1\|803760_804066_-	hypothetical protein	A0A0F6N4H9	Staphylococcus_phage	1.7e-49	100.0
AWR00290.1\|804066_804252_-	hypothetical protein	A0A0F6N3K7	Staphylococcus_phage	1.1e-27	100.0
AWR00301.1\|804256_804661_-	hypothetical protein	A1KX76	Staphylococcus_virus	9.6e-69	100.0
AWR00244.1\|804670_804892_-	hypothetical protein	Q9G021	Staphylococcus_phage	4.9e-35	98.6
AWR00981.1\|804894_805110_-	putative phage protein	A9CR72	Staphylococcus_phage	1.5e-33	95.8
AWQ98491.1\|805106_806348_-	dnaB-like helicase C terminal domain protein	A0A0E3T8L1	Staphylococcus_phage	2.0e-226	98.5
AWR00497.1\|806431_806701_-	hypothetical protein	Q4ZBE2	Staphylococcus_virus	2.6e-46	100.0
AWQ99833.1\|806700_807510_-	dnaD domain protein	Q4ZBE3	Staphylococcus_virus	6.1e-107	97.8
AWQ99722.1\|807481_808177_-	hypothetical protein	A0A2I6PDA6	Staphylococcus_phage	3.5e-127	97.7
AWQ99942.1\|808188_808623_-	single-stranded DNA-binding family protein	A0A0H3U4B5	Staphylococcus_phage	1.0e-55	72.4
AWQ99177.1\|808622_809246_-	hypothetical protein	A0A2H4PQQ6	Staphylococcus_phage	5.2e-114	99.5
AWQ98696.1\|809238_809460_-	hypothetical protein	A0A1X9H047	Staphylococcus_phage	1.2e-33	100.0
AWQ99618.1\|809469_809730_-	hypothetical protein	C8CGY6	Staphylococcus_phage	8.9e-44	100.0
AWQ98567.1\|809821_809983_-	hypothetical protein	Q4ZAZ7	Staphylococcus_virus	2.5e-20	100.0
AWR00389.1\|809975_810197_-	hypothetical protein	B2ZYU8	Staphylococcus_phage	8.7e-32	100.0
AWR00508.1\|810267_810921_+	hypothetical protein	A0A0H4IPV1	Staphylococcus_phage	4.5e-116	100.0
AWQ99385.1\|810930_811074_-	hypothetical protein	A0A0H4ITW0	Staphylococcus_phage	1.9e-16	100.0
AWR00284.1\|811089_811842_-	phage antirepressor KilAC domain protein	S4SW96	Staphylococcus_phage	3.7e-138	99.6
AWR00493.1\|811843_812029_-	helix-turn-helix family protein	A0A0H4IP57	Staphylococcus_phage	1.3e-25	100.0
AWQ99949.1\|812474_812957_+	hypothetical protein	A0A0N9BAX2	Staphylococcus_phage	4.1e-82	99.4
AWR00429.1\|813057_813237_-	hypothetical protein	A0A0N9BAV3	Staphylococcus_phage	1.7e-25	100.0
AWR01062.1\|813250_813487_-	cro/C1-type HTH DNA-binding domain protein	A0A0N9BAY2	Staphylococcus_phage	1.5e-37	100.0
AWR00502.1\|813638_813953_+	helix-turn-helix family protein	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
AWR00458.1\|813965_814427_+	hypothetical protein	A0A2K9VBR7	Staphylococcus_phage	1.2e-83	100.0
AWR00240.1\|814610_815048_+	hypothetical protein	Q4ZE05	Staphylococcus_virus	2.0e-75	100.0
AWQ99367.1\|815041_815449_+	hypothetical protein	Q4ZE06	Staphylococcus_virus	3.8e-73	100.0
AWR00993.1\|815445_815643_-	putative periplasmic protein involved in polysaccharide export	Q4ZA73	Staphylococcus_virus	1.5e-30	100.0
AWR00168.1\|815755_816805_+\|integrase	phage integrase family protein	A1KWY3	Staphylococcus_virus	1.6e-203	100.0
AWR00112.1\|816872_818270_-	feS assembly protein SufB	NA	NA	NA	NA
AWQ98763.1\|818420_818885_-	SUF system FeS assembly protein, NifU family	NA	NA	NA	NA
AWR00237.1\|818874_820116_-	putative cysteine desulfurase	Q2XUY6	environmental_halophage	1.8e-110	44.5
824792:824807	attR	NA	NA	NA	NA

DBSCAN-SWA_5

851572 : 870178

Staphylococcus_phage(63.16%)

integrase,terminase,capsid

attL 851212:851263|attR 866833:866884

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
851212:851263	attL	NA	NA	NA	NA
AWQ98767.1\|851572_852295_+	enterotoxin type E	A0A1X9H080	Staphylococcus_phage	2.1e-26	34.9
AWQ98672.1\|852461_853262_-	enterotoxin type C-3	A0A097PAT7	Streptococcus_pyogenes_phage	6.1e-51	47.5
AWQ99762.1\|854049_854610_+	putative penicillin binding protein	Q4ZBG8	Staphylococcus_virus	5.4e-62	68.1
AWR00113.1\|854912_855044_-	hypothetical protein	NA	NA	NA	NA
AWQ98800.1\|855486_856191_+	toxic shock syndrome toxin-1	NA	NA	NA	NA
AWR00315.1\|856345_856915_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	7.9e-101	97.4
AWR00452.1\|856911_857253_-	putative pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	1.7e-58	100.0
AWR01029.1\|857255_857783_-\|capsid	putative determinant of capsid size	Q4ZE87	Staphylococcus_phage	5.4e-88	96.0
AWQ99002.1\|857833_858052_-	hypothetical protein	NA	NA	NA	NA
AWR00763.1\|858069_858648_-	putative pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AWQ98668.1\|858659_859001_-	putative saPI1 ORF8-like protein	Q4ZE66	Staphylococcus_phage	2.4e-57	98.2
AWQ98626.1\|859450_860092_-	putative saPI1 ORF9-like protein	Q4ZE67	Staphylococcus_phage	4.5e-113	94.8
AWR00488.1\|860088_860373_-	putative pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.0e-45	92.6
AWQ99149.1\|860374_860737_-	putative interference protein with phage growth	A0A1W6JQD5	Staphylococcus_phage	8.9e-66	99.2
AWQ99279.1\|861022_862492_-	virulence-associated E family protein	A0A1W6JQD6	Staphylococcus_phage	2.9e-288	99.2
AWR00477.1\|862508_863378_-	primase C terminal 1 family protein	A0A1W6JQL5	Staphylococcus_phage	9.3e-162	96.5
AWQ98485.1\|863465_863759_-	hypothetical protein	A0A1W6JQH0	Staphylococcus_phage	8.9e-24	61.8
AWR00449.1\|863759_864170_-	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	2.4e-59	85.8
AWQ99068.1\|864171_864309_-	putative membrane protein	NA	NA	NA	NA
AWR00836.1\|864321_864540_-	helix-turn-helix family protein	NA	NA	NA	NA
AWR00395.1\|864727_865657_+	hypothetical protein	Q9AZH9	Lactococcus_phage	2.2e-12	35.6
AWQ99857.1\|866354_866756_+\|integrase	phage integrase family protein	A0A0A8WF08	Clostridium_phage	6.7e-14	36.3
AWQ99737.1\|867319_867784_-	ssrA-binding protein	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
866833:866884	attR	NA	NA	NA	NA
AWR00099.1\|867805_870178_-	ribonuclease R	Q0GXV6	Lactococcus_phage	4.3e-92	38.8

DBSCAN-SWA_6

924324 : 936900

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ99430.1\|924324_925296_-	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	1.0e-140	79.9
AWQ99502.1\|925441_925606_-	hypothetical protein	NA	NA	NA	NA
AWQ99252.1\|925670_926642_-	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	3.2e-171	91.3
AWR00196.1\|926759_928865_-	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWQ98554.1\|928827_929226_-	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWR00023.1\|930027_930894_+	eamA-like transporter family protein	NA	NA	NA	NA
AWQ98871.1\|930913_931414_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWQ99259.1\|931755_933261_+	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.6e-58	32.2
AWQ99828.1\|933530_934448_+	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
AWR00039.1\|935135_935684_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWR00863.1\|935841_936900_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	2.6e-20	26.9

DBSCAN-SWA_7

948876 : 956695

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR00356.1\|948876_950028_-	chorismate binding enzyme family protein	S4VNU7	Pandoravirus	2.1e-23	36.1
AWQ99457.1\|950011_950605_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	8.9e-39	44.0
AWQ99484.1\|950955_951624_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	7.4e-66	57.5
AWR00377.1\|951625_952045_+	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWQ99353.1\|952048_952762_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWQ99182.1\|952860_953445_+	putative membrane protein	NA	NA	NA	NA
AWQ98973.1\|953724_954165_+	electron transfer DM13 family protein	NA	NA	NA	NA
AWQ98856.1\|954505_954979_+	doxX family protein	NA	NA	NA	NA
AWQ99202.1\|954953_955640_+	response regulator	NA	NA	NA	NA
AWQ98596.1\|955639_956695_+	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_8

2412685 : 2465424

Staphylococcus_phage(87.14%)

tail,head,integrase,portal,holin,protease,capsid

attL 2421500:2421517|attR 2445983:2446000

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR00666.1\|2412685_2413429_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWQ99397.1\|2413603_2413888_+	10 kDa chaperonin	A0A221S386	uncultured_virus	4.7e-14	46.2
AWR01003.1\|2413963_2415580_+	chaperonin GroL	A0A240F779	uncultured_virus	3.4e-157	54.7
AWR01086.1\|2416140_2417448_-	ktr system potassium uptake protein B	NA	NA	NA	NA
AWR00881.1\|2417843_2419067_-	putative succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AWQ98658.1\|2419497_2420553_+	hypothetical protein	A0A2I6PER8	Staphylococcus_phage	6.0e-38	34.6
AWQ99582.1\|2420574_2421594_+	leucotoxin LukDv	A0A2I6PEU3	Staphylococcus_phage	2.6e-54	39.8
2421500:2421517	attL	NA	NA	NA	NA
AWR00530.1\|2421850_2422675_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
AWQ98560.1\|2422731_2423769_-\|integrase	integrase	A0EWV2	Staphylococcus_phage	3.4e-179	99.7
AWQ98805.1\|2423827_2424292_-	putative lipoprotein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
AWR00542.1\|2424391_2424574_-	hypothetical protein	R9QT81	Staphylococcus_phage	5.3e-27	100.0
AWQ99602.1\|2424729_2425428_-	ion transport family protein	A0A1B0Y2S3	Lactobacillus_phage	4.4e-13	29.8
AWQ99066.1\|2425609_2426242_-	helix-turn-helix family protein	Q4ZB06	Staphylococcus_virus	1.9e-103	90.4
AWR00358.1\|2426395_2426623_+	helix-turn-helix domain protein	Q4ZB05	Staphylococcus_virus	3.5e-36	98.7
AWQ98749.1\|2426645_2427434_+	phage antirepressor KilAC domain protein	R9QSV3	Staphylococcus_phage	1.8e-143	99.2
AWR00061.1\|2427450_2427645_+	hypothetical protein	Q4ZDS1	Staphylococcus_virus	1.0e-23	100.0
AWQ98859.1\|2427639_2427996_-	hypothetical protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
AWR00652.1\|2428045_2428237_+	hypothetical protein	Q4ZDR9	Staphylococcus_virus	2.1e-26	100.0
AWQ98981.1\|2428238_2428466_-	hypothetical protein	A7TWL9	Staphylococcus_phage	1.9e-37	98.7
AWQ99784.1\|2428524_2428845_+	hypothetical protein	Q4ZDR7	Staphylococcus_virus	1.5e-56	100.0
AWR00227.1\|2429095_2429398_+	hypothetical protein	A1KWZ5	Staphylococcus_virus	1.2e-26	63.6
AWQ98622.1\|2429401_2429662_+	hypothetical protein	A0A0H3U2T6	Staphylococcus_phage	3.2e-41	95.3
AWQ99569.1\|2429942_2431886_+	AAA domain protein	S4V9K6	Staphylococcus_phage	0.0e+00	98.9
AWR00077.1\|2431887_2432808_+	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	7.3e-165	99.0
AWR01015.1\|2433020_2433506_+	beta-lactamase superfamily domain protein	A0A2I6PDI9	Staphylococcus_phage	2.7e-86	99.4
AWQ99026.1\|2433506_2433977_+	single-stranded DNA-binding protein ssb	A0A1W6JPL9	Staphylococcus_phage	8.0e-83	100.0
AWR00934.1\|2434324_2434891_+	dnaD domain protein	W5R8H6	Staphylococcus_phage	8.7e-76	96.8
AWR00177.1\|2434897_2435116_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AWQ98851.1\|2435124_2435529_+	endodeoxyribonuclease RusA family protein	O80087	Staphylococcus_phage	1.4e-72	99.3
AWQ99022.1\|2435541_2435910_+	PVL ORF-50-like family protein	I1W656	Staphylococcus_phage	1.2e-49	98.4
AWR00560.1\|2435991_2436156_+	phage family protein	C8CH00	Staphylococcus_phage	4.5e-25	98.1
AWR00455.1\|2436170_2436515_+	acetyltransferase family protein	A0A0F6N3K4	Staphylococcus_phage	2.2e-45	90.0
AWQ98753.1\|2436507_2436756_+	hypothetical protein	A0EWY0	Staphylococcus_phage	3.5e-37	97.6
AWR01026.1\|2436748_2437285_+	dUTPase family protein	M1SNY5	Staphylococcus_phage	1.5e-93	98.3
AWQ99332.1\|2437438_2437567_+	hypothetical protein	A9CR89	Staphylococcus_phage	3.2e-10	95.2
AWQ98705.1\|2437563_2437770_+	hypothetical protein	A0A2I6PDB6	Staphylococcus_phage	1.9e-25	86.8
AWQ98950.1\|2437766_2437970_+	hypothetical protein	B2ZYX5	Staphylococcus_phage	5.7e-30	95.5
AWQ99305.1\|2437962_2438112_+	transcriptional activator RinB family protein	A0A1W6JPZ2	Staphylococcus_phage	1.1e-17	98.0
AWQ99453.1\|2438318_2438921_+	hypothetical protein	D2JLD8	Staphylococcus_phage	4.5e-107	99.5
AWR00215.1\|2438917_2439121_+	hypothetical protein	R9QT57	Staphylococcus_phage	6.3e-29	100.0
AWR00797.1\|2439148_2439565_+	phage transcriptional regulator, RinA family protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AWR00803.1\|2439796_2440096_+	HNH endonuclease family protein	G4KNP8	Staphylococcus_phage	7.9e-52	99.0
AWQ99734.1\|2440226_2440571_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWQ98693.1\|2440567_2442229_+	phage Terminase family protein	A0A075M4D3	Staphylococcus_phage	0.0e+00	100.0
AWR00387.1\|2442244_2443432_+\|portal	phage portal protein, HK97 family	A0A2I6PDI1	Staphylococcus_phage	3.0e-219	99.7
AWQ98745.1\|2443415_2444153_+\|protease	clp protease family protein	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AWQ98806.1\|2444176_2445322_+\|capsid	phage major capsid protein, HK97 family	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AWQ98883.1\|2445341_2445602_+	hypothetical protein	A0A0H3U504	Staphylococcus_phage	3.2e-41	98.8
AWQ99230.1\|2445614_2445899_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWR00750.1\|2445882_2446245_+\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2445983:2446000	attR	NA	NA	NA	NA
AWR00453.1\|2446241_2446646_+	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
AWQ98635.1\|2446642_2447050_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AWR00093.1\|2447050_2447695_+\|tail	phage major tail, phi13 family protein	A0A2I6PDI6	Staphylococcus_phage	1.1e-119	100.0
AWR00966.1\|2447820_2447961_+	bacterial Ig-like domain family protein	A0A2I6PDK6	Staphylococcus_phage	2.5e-16	100.0
AWQ99181.1\|2448010_2448361_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AWR00892.1\|2448411_2448549_+	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AWQ99361.1\|2448605_2453135_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A2I6PDK2	Staphylococcus_phage	0.0e+00	99.7
AWR00272.1\|2453131_2454616_+\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
AWR00571.1\|2454631_2458417_+	phage minor structural, N-terminal region domain protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.5
AWQ99735.1\|2458406_2458559_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AWQ98557.1\|2458605_2458893_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AWQ99065.1\|2459016_2459247_+	hypothetical protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
AWQ99591.1\|2459438_2459573_+	putative membrane protein	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
AWR00713.1\|2459784_2460039_+\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AWQ99637.1\|2460050_2460806_+	CHAP domain protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AWQ99018.1\|2460996_2461488_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AWQ99855.1\|2462176_2462473_+	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWQ99440.1\|2462567_2463017_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	2.5e-78	99.3
AWQ99906.1\|2463701_2464052_+	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWR00336.1\|2464104_2464296_-	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWQ98547.1\|2464440_2464596_+	hypothetical protein	A0A1P8L6A1	Staphylococcus_phage	1.4e-20	100.0
AWQ98556.1\|2464675_2464855_-	putative membrane protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AWR00392.1\|2465226_2465424_-	phospholipase C domain protein	A0A1P8L6A7	Staphylococcus_phage	8.3e-26	93.8

DBSCAN-SWA_9

2594520 : 2645258

Staphylococcus_phage(84.21%)

transposase,integrase,protease,tRNA

attL 2594502:2594520|attR 2600296:2600314

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2594502:2594520	attL	NA	NA	NA	NA
AWQ98623.1\|2594520_2595327_-\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.1e-76	54.5
AWR01084.1\|2595368_2595650_-\|transposase	transposase family protein	A0A0C5AJ30	Paenibacillus_phage	6.5e-24	64.5
AWR00519.1\|2596041_2596218_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	4.1e-24	91.4
AWR00987.1\|2596527_2597181_-	hypothetical protein	NA	NA	NA	NA
AWQ98727.1\|2597190_2598897_-	description family protein	NA	NA	NA	NA
AWR01046.1\|2599165_2599447_+\|transposase	transposase family protein	A0A0C5AJ30	Paenibacillus_phage	6.5e-24	64.5
AWR01080.1\|2599488_2600295_+\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.1e-76	54.5
AWQ98988.1\|2600291_2600468_-	hypothetical protein	NA	NA	NA	NA
2600296:2600314	attR	NA	NA	NA	NA
AWQ99051.1\|2600496_2600838_-	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	4.8e-53	91.2
AWR00331.1\|2600878_2601505_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-85	84.1
AWQ99898.1\|2601580_2602576_-	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	1.9e-73	97.2
AWQ98971.1\|2602656_2603271_-	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	4.6e-22	68.1
AWR00198.1\|2603582_2604065_+	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	1.9e-79	98.6
AWQ99575.1\|2604223_2605702_+	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.0e-277	95.1
AWR00833.1\|2605706_2606708_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.1e-185	97.6
AWR00984.1\|2606704_2606962_-	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	1.0e-44	97.6
AWR00665.1\|2607021_2607501_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AWQ99205.1\|2607481_2608252_+	prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	6.8e-140	97.6
AWR00985.1\|2608631_2610224_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
AWR00382.1\|2610595_2611789_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AWQ99587.1\|2611913_2612822_+	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	9.8e-138	99.7
AWQ99203.1\|2613033_2613867_+	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.3
AWQ98504.1\|2614116_2614470_-	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	2.7e-19	91.5
AWQ99989.1\|2614466_2614832_-	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	6.2e-59	99.2
AWQ99803.1\|2615087_2615237_-	putative membrane protein	NA	NA	NA	NA
AWQ99083.1\|2615648_2616362_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AWQ99212.1\|2616861_2617482_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWQ99917.1\|2617648_2618284_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWR01055.1\|2618580_2619024_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.1e-49	77.9
AWR00476.1\|2619010_2619250_-	comK family protein	NA	NA	NA	NA
AWQ99185.1\|2619443_2619602_+	hypothetical protein	NA	NA	NA	NA
AWQ99020.1\|2619566_2620037_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	3.8e-69	85.2
AWQ99060.1\|2620235_2620460_+	hypothetical protein	NA	NA	NA	NA
AWQ98714.1\|2620734_2621589_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWR00282.1\|2621675_2622968_-	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	3.0e-217	94.9
AWQ98793.1\|2623924_2625427_+	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AWR00426.1\|2625908_2626952_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-195	98.8
AWQ99753.1\|2626958_2627591_+	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	2.1e-110	97.6
AWQ98702.1\|2627601_2628783_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AWR00824.1\|2628795_2629260_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-69	98.7
AWR00394.1\|2629381_2630383_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AWR01069.1\|2630616_2631444_+	alpha/beta hydrolase family protein	NA	NA	NA	NA
AWR00381.1\|2632014_2632416_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWQ99277.1\|2632532_2633096_-	rRNA methylase family protein	A0A2H4PQV0	Staphylococcus_phage	4.1e-102	98.4
AWR00144.1\|2633092_2634046_-	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWQ99096.1\|2634155_2635337_+	major Facilitator Superfamily protein	A0A2H4PQR6	Staphylococcus_phage	9.6e-218	99.7
AWQ98769.1\|2635628_2638043_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	98.7
AWQ99330.1\|2638064_2638376_+	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	6.9e-51	97.1
AWQ99584.1\|2638700_2645258_+	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	2.3e-292	87.6

DBSCAN-SWA_10

2768542 : 2777586

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR00075.1\|2768542_2769547_+	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AWQ99442.1\|2769548_2770574_+\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AWR00255.1\|2770596_2771736_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWQ99645.1\|2771754_2772015_+	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWR00675.1\|2772289_2774569_+	protein-export membrane protein SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.1e-31	36.2
AWR00990.1\|2774772_2777046_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	7.3e-65	29.5
AWQ98880.1\|2777067_2777586_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.1e-28	45.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029652

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection