CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029666	Staphylococcus aureus strain AR_0225 plasmid unnamed1, complete sequence	0 crisprs	WYL,csa3	0	0	1	0
CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	10 crisprs	csa3,DEDDh,cas3,DinG	12	6	12	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7465 : 22558

Staphylococcus_phage(41.67%)

transposase,integrase

attL 16610:16665|attR 20619:20674

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR06483.1\|7465_8311_-	beta-lactamase	A0A1B0VBP7	Salmonella_phage	7.5e-31	34.0
AWR06499.1\|8417_10175_+	regulatory protein BlaR1	NA	NA	NA	NA
AWR06497.1\|10164_10545_+	methicillin resistance regulatory protein MecI	NA	NA	NA	NA
AWR06503.1\|10808_11387_+	resolvase, N terminal domain protein	A0A0A7NPV4	Enterobacteria_phage	4.9e-42	51.7
AWR06500.1\|12056_12302_+\|transposase	putative transposase TnpA	A0A0N9RU54	Staphylococcus_phage	1.1e-40	98.8
AWR06482.1\|12363_12729_+	DDE domain protein	A0A0N9SKD3	Staphylococcus_phage	1.4e-63	99.2
AWR06508.1\|12897_13245_-	WYL domain protein	E4ZFP5	Streptococcus_phage	7.0e-60	99.1
AWR06489.1\|13744_14539_-	aminoglycoside 3'-phosphotransferase	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
AWR06478.1\|14631_15162_-	acetyltransferase family protein	A0A1B0RXL7	Streptococcus_phage	1.3e-89	97.8
AWR06502.1\|15934_16609_-\|integrase	integrase core domain protein	A0A0N9SKD3	Staphylococcus_phage	2.6e-127	98.7
16610:16665	attL	NA	NA	NA	NA
AWR06505.1\|16638_16842_-	bacitracin resistance BacA family protein	NA	NA	NA	NA
AWR06490.1\|16855_17545_-	ABC-2 transporter family protein	NA	NA	NA	NA
AWR06491.1\|17585_18506_-	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-41	42.2
AWR06501.1\|18630_19233_-	histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein	Q6XLV6	Feldmannia_irregularis_virus	2.8e-08	29.6
AWR06486.1\|19329_19512_-	putative membrane protein	NA	NA	NA	NA
AWR06507.1\|19508_19874_-	transcriptional regulatory, C terminal family protein	NA	NA	NA	NA
AWR06496.1\|19943_20618_-\|integrase	integrase core domain protein	A0A0N9RU54	Staphylococcus_phage	1.7e-126	97.3
AWR06485.1\|21091_22558_+	ABC transporter family protein	A0A2I4R674	Erysipelothrix_phage	6.6e-67	37.7
20619:20674	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP029667

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CRISPR-Cas detection and classification

Crispr_ID: CP029667_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_1

423466-423659

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRT

3 spacers

The CRISPR arrays of CP029667_1

>merge|CP029667|1|423466-423659|CRT
TACAAGTTGGCGGGGCCCCAACACAGAAGCTGACAGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAACGGGGCCCCAACACAGAAGGTGACGAAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACA

>CP029667|1|1|423466-423659|CRT
TACAAGTTGGCGGGGCCCCAACA	CAGAAGCTGACAGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGGGCCCCAACA	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA
AGTTGGGGAACGGGGCCCCAACA	CAGAAGGTGACGAAAAGTCAGCATACAATAATG
TGCAAGTTGGCGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR08864.1\|421442_421676_+\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP029667.1\|AWR08125.1\|425670_426111_-\|marR-family-protein	unknown	unknown	gnl\|CDD\|197670
CP029667.1\|AWR06782.1\|432966_433131_-\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR07532.1\|418170_418677_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029667.1\|AWR07026.1\|418678_419173_-\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP029667.1\|AWR07878.1\|426272_427037_+\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP029667.1\|AWR08235.1\|422394_423324_+\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
CP029667.1\|AWR07715.1\|421682_422282_+\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029667.1\|AWR08406.1\|427668_428934_+\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029667.1\|AWR08317.1\|429050_432218_+\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029667.1\|AWR07084.1\|420491_420977_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029667.1\|AWR08654.1\|416360_416966_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226628
CP029667.1\|AWR08531.1\|434342_434474_+\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR08759.1\|419235_420495_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029667.1\|AWR07012.1\|424014_424365_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029667.1\|AWR07995.1\|417135_418140_+\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029667.1\|AWR06516.1\|420990_421437_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029667.1\|AWR07862.1\|433263_434172_+\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029667.1\|AWR09066.1\|424466_425678_-\|major-Facilitator-Superfamily-protein	unknown	unknown	gnl\|CDD\|341042
CP029667.1\|AWR06888.1\|432404_432722_-\|putative-membrane-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR08864.1\|421442_421676_+\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP029667.1\|AWR08125.1\|425670_426111_-\|marR-family-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.873e-15
CP029667.1\|AWR07532.1\|418170_418677_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	1.02752e-64
CP029667.1\|AWR07026.1\|418678_419173_-\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	3.63862e-98
CP029667.1\|AWR07878.1\|426272_427037_+\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP029667.1\|AWR08235.1\|422394_423324_+\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.19963e-143
CP029667.1\|AWR07715.1\|421682_422282_+\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
CP029667.1\|AWR08406.1\|427668_428934_+\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	4.8324e-143
CP029667.1\|AWR08317.1\|429050_432218_+\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029667.1\|AWR07084.1\|420491_420977_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	4.35501e-50
CP029667.1\|AWR08654.1\|416360_416966_+\|ABC-transporter-family-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.32197e-115
CP029667.1\|AWR08759.1\|419235_420495_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	9.49423e-160
CP029667.1\|AWR07012.1\|424014_424365_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029667.1\|AWR07995.1\|417135_418140_+\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	3.67241e-132
CP029667.1\|AWR06516.1\|420990_421437_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
CP029667.1\|AWR07862.1\|433263_434172_+\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.24911e-42
CP029667.1\|AWR09066.1\|424466_425678_-\|major-Facilitator-Superfamily-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27961e-72

>CP029667.1|AWR08235.1|422394_423324_+|molybdenum-cofactor-biosynthesis-protein-A
MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029667.1|AWR07715.1|421682_422282_+|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP029667.1|AWR08864.1|421442_421676_+|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029667.1|AWR06516.1|420990_421437_+|molybdopterin-synthase-catalytic-subunit
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029667.1|AWR07084.1|420491_420977_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP029667.1|AWR08759.1|419235_420495_+|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFVDGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029667.1|AWR07026.1|418678_419173_-|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTLIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSNQ
>CP029667.1|AWR07532.1|418170_418677_+|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIDGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029667.1|AWR07995.1|417135_418140_+|thiF-family-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKYRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029667.1|AWR08654.1|416360_416966_+|ABC-transporter-family-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP029667.1|AWR07012.1|424014_424365_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029667.1|AWR09066.1|424466_425678_-|major-Facilitator-Superfamily-protein
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029667.1|AWR08125.1|425670_426111_-|marR-family-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLREAHND
>CP029667.1|AWR07878.1|426272_427037_+|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029667.1|AWR08406.1|427668_428934_+|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMKTSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029667.1|AWR08317.1|429050_432218_+|swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029667.1|AWR06888.1|432404_432722_-|putative-membrane-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRISRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP029667.1|AWR06782.1|432966_433131_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDIEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029667.1|AWR07862.1|433263_434172_+|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFVMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNISHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVYVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLTFIGMTTNLTIIISIIILYVYQAVFV
>CP029667.1|AWR08531.1|434342_434474_+|hypothetical-protein
MYGAYLIYEYHQDFKSIANFKVLKRMINVMMCYCVLFLEPRIS

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Crispr_ID: CP029667_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_2

547399-547549

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTAACAACTAAAGTT	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of CP029667_2

>merge|CP029667|2|547399-547549|CRISPRCasFinder
TAGAAAGAAGCCCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCATAAGAGCCCCTAACAACTAAAGTTTAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTT

>CP029667|2|1|547399-547549|CRISPRCasFinder
TAGAAAGAAGCCCCTAACAACTAAAGTT	GAAAAATAGAGGAACACAGTTGGATGCTACGCATCAAC
TGCATAAGAGCCCCTAACAACTAAAGTT	TAAAAGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR08523.1\|532052_534053_+\|LPXTG-cell-wall-anchor-domain-protein	unknown	unknown	gnl\|CDD\|336743
CP029667.1\|AWR08602.1\|556356_557067_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP029667.1\|AWR08411.1\|553348_554722_+\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP029667.1\|AWR07515.1\|538090_539629_-\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP029667.1\|AWR09053.1\|535477_535912_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP029667.1\|AWR06923.1\|545139_546276_+\|SAP-domain-protein	unknown	unknown	gnl\|CDD\|366887
CP029667.1\|AWR08080.1\|551477_552416_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP029667.1\|AWR09129.1\|535923_538056_-\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	unknown	unknown	gnl\|CDD\|226234
CP029667.1\|AWR08305.1\|555179_555593_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP029667.1\|AWR06877.1\|548923_549904_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP029667.1\|AWR07496.1\|542346_543129_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224044
CP029667.1\|AWR06562.1\|534371_535478_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP029667.1\|AWR08385.1\|540309_542115_+\|glutamine-fructose-6-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234729
CP029667.1\|AWR08246.1\|550377_551043_+\|NADH(P)-binding-family-protein	unknown	unknown	gnl\|CDD\|187554
CP029667.1\|AWR09006.1\|552446_552677_+\|putative-membrane-protein	unknown	unknown	unknown
CP029667.1\|AWR08974.1\|546334_546538_+\|resolvase,-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|239737
CP029667.1\|AWR09051.1\|555792_556236_+\|DNA-protection-during-starvation-protein-1	unknown	unknown	gnl\|CDD\|223854
CP029667.1\|AWR07254.1\|543196_544054_+\|cof-like-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223635
CP029667.1\|AWR08072.1\|547566_548658_-\|putative-membrane-protein	unknown	unknown	unknown
CP029667.1\|AWR08133.1\|549905_550226_-\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR08523.1\|532052_534053_+\|LPXTG-cell-wall-anchor-domain-protein	gnl\|CDD\|336743	pfam07564, DUF1542, Domain of Unknown Function (DUF1542). This domain is found in several cell surface proteins. Some are involved in antibiotic resistance and/or cellular adhesion.	3.35569e-07
CP029667.1\|AWR08602.1\|556356_557067_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP029667.1\|AWR08411.1\|553348_554722_+\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.73013e-06
CP029667.1\|AWR07515.1\|538090_539629_-\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP029667.1\|AWR09053.1\|535477_535912_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP029667.1\|AWR06923.1\|545139_546276_+\|SAP-domain-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	3.91533e-06
CP029667.1\|AWR08080.1\|551477_552416_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP029667.1\|AWR09129.1\|535923_538056_-\|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.74009e-67
CP029667.1\|AWR08305.1\|555179_555593_+\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP029667.1\|AWR07496.1\|542346_543129_+\|ABC-transporter-family-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	4.88024e-103
CP029667.1\|AWR06562.1\|534371_535478_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP029667.1\|AWR08385.1\|540309_542115_+\|glutamine-fructose-6-phosphate-transaminase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029667.1\|AWR08246.1\|550377_551043_+\|NADH(P)-binding-family-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.74381e-48
CP029667.1\|AWR06877.1\|548923_549904_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
CP029667.1\|AWR09051.1\|555792_556236_+\|DNA-protection-during-starvation-protein-1	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP029667.1\|AWR08974.1\|546334_546538_+\|resolvase,-N-terminal-domain-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.78732e-14
CP029667.1\|AWR07254.1\|543196_544054_+\|cof-like-hydrolase-family-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.39747e-59
CP029667.1\|AWR08133.1\|549905_550226_-\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17

>CP029667.1|AWR08974.1|546334_546538_+|resolvase,-N-terminal-domain-protein
MIVYQRKINIDTLKEFGCGCVYSERISGVKRTELVKCLDYLRESDTLVVYQLDRLGRTTKLLIELSQ
>CP029667.1|AWR06923.1|545139_546276_+|SAP-domain-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
>CP029667.1|AWR07254.1|543196_544054_+|cof-like-hydrolase-family-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAEHFLAE
>CP029667.1|AWR07496.1|542346_543129_+|ABC-transporter-family-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMFAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP029667.1|AWR08385.1|540309_542115_+|glutamine-fructose-6-phosphate-transaminase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP029667.1|AWR07515.1|538090_539629_-|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP029667.1|AWR09129.1|535923_538056_-|PTS-system,-Lactose/Cellobiose-specific-IIB-subunit
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLDQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP029667.1|AWR09053.1|535477_535912_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP029667.1|AWR06562.1|534371_535478_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVEDSSIEAGLRRVLAETSQYITNEFDFTEAEQAAYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP029667.1|AWR08523.1|532052_534053_+|LPXTG-cell-wall-anchor-domain-protein
MDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVNADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTANGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNDKVAQPKSENKAKAEKDGSDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKEKMTSTNVSQKDDTATADTNDTQKSVGSAANNKATQNDGANASPATVSNGSNSANQDMLNVTNTDDHQAKTKSAQQGKVNKAKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>CP029667.1|AWR08072.1|547566_548658_-|putative-membrane-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP029667.1|AWR06877.1|548923_549904_-|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP029667.1|AWR08133.1|549905_550226_-|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP029667.1|AWR08246.1|550377_551043_+|NADH(P)-binding-family-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>CP029667.1|AWR08080.1|551477_552416_+|mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP029667.1|AWR09006.1|552446_552677_+|putative-membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP029667.1|AWR08411.1|553348_554722_+|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHG
>CP029667.1|AWR08305.1|555179_555593_+|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP029667.1|AWR09051.1|555792_556236_+|DNA-protection-during-starvation-protein-1
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP029667.1|AWR08602.1|556356_557067_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Click the colored protein region to show detailed information

Crispr_ID: CP029667_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_3

782359-782437

Orphan

Consensus_repeat	Method
TGCAGGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP029667_3

>merge|CP029667|3|782359-782437|CRISPRCasFinder
TGCAGGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACA

>CP029667|3|2|782359-782437|CRISPRCasFinder
TGCAGGTTGGCGGGGCCCCAACA	CAGAAGCTGACGAAAAGTCAGCTTACGATAATG
TGCAGGTTGGCGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR06818.1\|783995_784697_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227100
CP029667.1\|AWR07373.1\|774340_774871_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378690
CP029667.1\|AWR06553.1\|782619_783378_+\|methionine-aminopeptidase,-type-I	unknown	unknown	gnl\|CDD\|235576
CP029667.1\|AWR08954.1\|783594_783981_+\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR08367.1\|789071_790319_+\|thermophilic-metalloprotease-family-protein	unknown	unknown	gnl\|CDD\|376723
CP029667.1\|AWR08238.1\|775117_776188_+\|impB/mucB/samB-family-protein	unknown	unknown	gnl\|CDD\|235035
CP029667.1\|AWR07882.1\|772809_774171_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	unknown	unknown	gnl\|CDD\|225174
CP029667.1\|AWR07380.1\|777990_779304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223840
CP029667.1\|AWR08189.1\|771781_772729_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|183982
CP029667.1\|AWR07089.1\|776255_776810_-\|exonuclease-family-protein	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
CP029667.1\|AWR09035.1\|779305_780037_+\|cobB/CobQ-like-glutamine-amidotransferase-domain-protein	unknown	unknown	gnl\|CDD\|225974
CP029667.1\|AWR08016.1\|786471_787689_-\|yihY-family-inner-membrane-domain-protein	unknown	unknown	gnl\|CDD\|224214
CP029667.1\|AWR08263.1\|785726_786356_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029667.1\|AWR06563.1\|781105_782092_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226614
CP029667.1\|AWR08551.1\|784693_785737_+\|sensor-protein-VraS	unknown	unknown	gnl\|CDD\|226951
CP029667.1\|AWR07636.1\|788853_789060_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227177
CP029667.1\|AWR08533.1\|777198_777699_-\|ferritin	unknown	unknown	gnl\|CDD\|224445
CP029667.1\|AWR08480.1\|787966_788242_-\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR08949.1\|788248_788713_-\|low-molecular-weight-protein-tyrosine-phosphatase-PtpA	unknown	unknown	gnl\|CDD\|319971
CP029667.1\|AWR07350.1\|780222_780675_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR06818.1\|783995_784697_+\|hypothetical-protein	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
CP029667.1\|AWR07373.1\|774340_774871_+\|hypothetical-protein	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.4991e-11
CP029667.1\|AWR06553.1\|782619_783378_+\|methionine-aminopeptidase,-type-I	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
CP029667.1\|AWR08367.1\|789071_790319_+\|thermophilic-metalloprotease-family-protein	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
CP029667.1\|AWR07882.1\|772809_774171_+\|23S-rRNA-(uracil-5-)-methyltransferase-RumA	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	0
CP029667.1\|AWR07380.1\|777990_779304_+\|hypothetical-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	7.18737e-99
CP029667.1\|AWR08189.1\|771781_772729_+\|diacylglycerol-kinase	gnl\|CDD\|183982	PRK13337, PRK13337, putative lipid kinase; Reviewed.	0
CP029667.1\|AWR07089.1\|776255_776810_-\|exonuclease-family-protein	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	1.92778e-75
CP029667.1\|AWR09035.1\|779305_780037_+\|cobB/CobQ-like-glutamine-amidotransferase-domain-protein	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.33663e-121
CP029667.1\|AWR08016.1\|786471_787689_-\|yihY-family-inner-membrane-domain-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	4.24482e-85
CP029667.1\|AWR08263.1\|785726_786356_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.91794e-79
CP029667.1\|AWR06563.1\|781105_782092_-\|hypothetical-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
CP029667.1\|AWR08551.1\|784693_785737_+\|sensor-protein-VraS	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
CP029667.1\|AWR07636.1\|788853_789060_+\|hypothetical-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	2.64328e-25
CP029667.1\|AWR08533.1\|777198_777699_-\|ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
CP029667.1\|AWR08949.1\|788248_788713_-\|low-molecular-weight-protein-tyrosine-phosphatase-PtpA	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
CP029667.1\|AWR08238.1\|775117_776188_+\|impB/mucB/samB-family-protein	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0

>CP029667.1|AWR06563.1|781105_782092_-|hypothetical-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>CP029667.1|AWR07350.1|780222_780675_+|hypothetical-protein
MQHEKMNDERNLTMKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDCDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>CP029667.1|AWR09035.1|779305_780037_+|cobB/CobQ-like-glutamine-amidotransferase-domain-protein
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>CP029667.1|AWR07380.1|777990_779304_+|hypothetical-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLYLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>CP029667.1|AWR08533.1|777198_777699_-|ferritin
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>CP029667.1|AWR07089.1|776255_776810_-|exonuclease-family-protein
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>CP029667.1|AWR08238.1|775117_776188_+|impB/mucB/samB-family-protein
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>CP029667.1|AWR07373.1|774340_774871_+|hypothetical-protein
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLILLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ
>CP029667.1|AWR07882.1|772809_774171_+|23S-rRNA-(uracil-5-)-methyltransferase-RumA
MQAIAKNDIKTGTVVDLTHEGHGVVKIDRFPIFIPQALINEQIEYKIIKVKKNFAIGKLLNINTRSENRVAPPCIYYERCGGCQLQHLSYEAQLEMKKEQVINLFQRKAHFDNSKINDTVGMTDPWRYRNKSQIPVGKNEQNEVIMGFYRQRSHDIIDMESCLIQDSQHQEVMNEVKSILKDLNVSIYQEQLKKGLMRHLVVRTGYHTDEMMIIFVTNGKKWPQKNAVVEKILDAFPNVTSIKQNINDSHSNVIMGRQSITLYGKDTIIDQLTDSTFKISDQSFYQINSEQTEKLYNKAIEYAQLTGNEVVLDTYCGIGTIGLYMAPLAKHVYGVEVVPSAIEDAQQNATINQCNNTTFVCGKAEEVILQWKAQGIKPDVVMVDPPRKGCDETFIQTLLTLEPKRIVYISCNPATQQRDALLLAEKYQLEEVTPVDMFPQTTHVETVALFNLK
>CP029667.1|AWR08189.1|771781_772729_+|diacylglycerol-kinase
MRKRARIIYNPTSGKELFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIEGHSTKVDIGKMNNRYFINLAAGGQLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEYDGNVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAINISSFTDLQLNVDGEYGGKLPANFLNLERHIDVFAPNDIVNEELINNDHVDDNLIEE
>CP029667.1|AWR06553.1|782619_783378_+|methionine-aminopeptidase,-type-I
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>CP029667.1|AWR08954.1|783594_783981_+|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>CP029667.1|AWR06818.1|783995_784697_+|hypothetical-protein
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>CP029667.1|AWR08551.1|784693_785737_+|sensor-protein-VraS
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>CP029667.1|AWR08263.1|785726_786356_+|response-regulator
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>CP029667.1|AWR08016.1|786471_787689_-|yihY-family-inner-membrane-domain-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIIFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>CP029667.1|AWR08480.1|787966_788242_-|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>CP029667.1|AWR08949.1|788248_788713_-|low-molecular-weight-protein-tyrosine-phosphatase-PtpA
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>CP029667.1|AWR07636.1|788853_789060_+|hypothetical-protein
MAMTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHE
>CP029667.1|AWR08367.1|789071_790319_+|thermophilic-metalloprotease-family-protein
MTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAGKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029667_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_4

1891712-1892020

Orphan

Consensus_repeat	Method
CCAACTTGCANNNTNTNNNNAGCTGNCTTT	CRT
CCAGCCTCTGTGTTGGGGCCCCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP029667_4

>merge|CP029667|4|1891712-1892020|CRT,CRISPRCasFinder
CCAAATTGAAATTATCCTACTGCTGTCTTTTTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACACTATTGTAAGCTGACTTTTCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGAGGAGCTAATTTGTCTGTGTCGGGGCTCCACCCCAACTTGCACACTATTGTAAGCTGACTTTCCGCCAGCCTCTGTGTTGGGGCCCCGCCAACTTGCACACTATTGTAAGCTGACTTTCCACCAGCCTCTGTGTTGGGGCCCCG

>CP029667|4|2|1891712-1891994|CRT
CCAAATTGAAATTATCCTACTGCTGTCTTT	TTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACC
CCAACTTGCACACTATTGTAAGCTGACTTT	TCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCATTGTCTGTAGAAATTGAGGA	GCTAATTTGTCTGTGTCGGGGCTCCACC
CCAACTTGCACACTATTGTAAGCTGACTTT	CCGCCAGCCTCTGTGTTGGGGCCCCG
CCAACTTGCACACTATTGTAAGCTGACTTT

>CP029667|4|3|1891942-1892020|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCG	CCAACTTGCACACTATTGTAAGCTGACTTTCCA
CCAGCCTCTGTGTTGGGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR09192.1\|1896484_1896862_-\|S1-RNA-binding-domain-protein	unknown	unknown	gnl\|CDD\|224023
CP029667.1\|AWR09100.1\|1893497_1894688_-\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
CP029667.1\|AWR07285.1\|1900846_1901275_+\|na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
CP029667.1\|AWR06781.1\|1875836_1876739_-\|fumarylacetoacetate-(FAA)-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
CP029667.1\|AWR06754.1\|1887896_1889102_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
CP029667.1\|AWR08254.1\|1897934_1898318_+\|kinase-associated-B-family-protein	unknown	unknown	gnl\|CDD\|378054
CP029667.1\|AWR07553.1\|1889091_1890471_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
CP029667.1\|AWR08301.1\|1880558_1884035_-\|helicase-exonuclease-AddAB,-AddB-subunit	unknown	unknown	gnl\|CDD\|213736
CP029667.1\|AWR07360.1\|1876904_1880558_-\|helicase-exonuclease-AddAB,-AddA-subunit	unknown	unknown	gnl\|CDD\|274299
CP029667.1\|AWR08051.1\|1886214_1887546_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
CP029667.1\|AWR07574.1\|1885314_1885890_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223475
CP029667.1\|AWR06873.1\|1897277_1897871_-\|cyclophilin-type-peptidyl-prolyl-cis-trans-isomerase/CLD-family-protein	unknown	unknown	gnl\|CDD\|238908
CP029667.1\|AWR07476.1\|1901361_1901616_+\|na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
CP029667.1\|AWR08195.1\|1884785_1885310_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
CP029667.1\|AWR07260.1\|1894995_1896123_-\|flavin-oxidoreductase-/-NADH-oxidase-family-protein	unknown	unknown	gnl\|CDD\|240086
CP029667.1\|AWR06984.1\|1901608_1903105_+\|na(+)/H(+)-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
CP029667.1\|AWR08848.1\|1898448_1900854_+\|na(+)/H(+)-antiporter-subunit-A1	unknown	unknown	gnl\|CDD\|237155
CP029667.1\|AWR08031.1\|1890745_1891642_+\|glycerophosphoryl-diester-phosphodiesterase-family-protein	unknown	unknown	gnl\|CDD\|176543
CP029667.1\|AWR08448.1\|1892144_1893389_-\|NAD-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
CP029667.1\|AWR09013.1\|1884194_1884770_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR09192.1\|1896484_1896862_-\|S1-RNA-binding-domain-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
CP029667.1\|AWR09100.1\|1893497_1894688_-\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
CP029667.1\|AWR07285.1\|1900846_1901275_+\|na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
CP029667.1\|AWR06781.1\|1875836_1876739_-\|fumarylacetoacetate-(FAA)-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.0042e-87
CP029667.1\|AWR06754.1\|1887896_1889102_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
CP029667.1\|AWR08254.1\|1897934_1898318_+\|kinase-associated-B-family-protein	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	1.89892e-52
CP029667.1\|AWR07553.1\|1889091_1890471_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
CP029667.1\|AWR08301.1\|1880558_1884035_-\|helicase-exonuclease-AddAB,-AddB-subunit	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
CP029667.1\|AWR07360.1\|1876904_1880558_-\|helicase-exonuclease-AddAB,-AddA-subunit	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
CP029667.1\|AWR08051.1\|1886214_1887546_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
CP029667.1\|AWR07574.1\|1885314_1885890_-\|hypothetical-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.01759e-40
CP029667.1\|AWR06873.1\|1897277_1897871_-\|cyclophilin-type-peptidyl-prolyl-cis-trans-isomerase/CLD-family-protein	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
CP029667.1\|AWR07476.1\|1901361_1901616_+\|na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	7.96732e-49
CP029667.1\|AWR08195.1\|1884785_1885310_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.63848e-48
CP029667.1\|AWR07260.1\|1894995_1896123_-\|flavin-oxidoreductase-/-NADH-oxidase-family-protein	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
CP029667.1\|AWR06984.1\|1901608_1903105_+\|na(+)/H(+)-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
CP029667.1\|AWR08848.1\|1898448_1900854_+\|na(+)/H(+)-antiporter-subunit-A1	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
CP029667.1\|AWR08031.1\|1890745_1891642_+\|glycerophosphoryl-diester-phosphodiesterase-family-protein	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	1.09511e-150
CP029667.1\|AWR08448.1\|1892144_1893389_-\|NAD-specific-glutamate-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
CP029667.1\|AWR09013.1\|1884194_1884770_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	4.05406e-53

>CP029667.1|AWR08031.1|1890745_1891642_+|glycerophosphoryl-diester-phosphodiesterase-family-protein
MAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>CP029667.1|AWR07553.1|1889091_1890471_+|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPSYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>CP029667.1|AWR06754.1|1887896_1889102_+|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>CP029667.1|AWR08051.1|1886214_1887546_-|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>CP029667.1|AWR07574.1|1885314_1885890_-|hypothetical-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>CP029667.1|AWR08195.1|1884785_1885310_-|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDQDNNKHDSRQFGLIDKKDIIGNVSLRYYPFSKWTVQFKS
>CP029667.1|AWR09013.1|1884194_1884770_-|signal-peptidase-I
MKKEILEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIVGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>CP029667.1|AWR08301.1|1880558_1884035_-|helicase-exonuclease-AddAB,-AddB-subunit
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>CP029667.1|AWR07360.1|1876904_1880558_-|helicase-exonuclease-AddAB,-AddA-subunit
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPKNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFRVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>CP029667.1|AWR06781.1|1875836_1876739_-|fumarylacetoacetate-(FAA)-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK
>CP029667.1|AWR08448.1|1892144_1893389_-|NAD-specific-glutamate-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVDEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>CP029667.1|AWR09100.1|1893497_1894688_-|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>CP029667.1|AWR07260.1|1894995_1896123_-|flavin-oxidoreductase-/-NADH-oxidase-family-protein
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSNIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>CP029667.1|AWR09192.1|1896484_1896862_-|S1-RNA-binding-domain-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>CP029667.1|AWR06873.1|1897277_1897871_-|cyclophilin-type-peptidyl-prolyl-cis-trans-isomerase/CLD-family-protein
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>CP029667.1|AWR08254.1|1897934_1898318_+|kinase-associated-B-family-protein
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHDRKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>CP029667.1|AWR08848.1|1898448_1900854_+|na(+)/H(+)-antiporter-subunit-A1
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>CP029667.1|AWR07285.1|1900846_1901275_+|na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>CP029667.1|AWR07476.1|1901361_1901616_+|na(+)/H(+)-antiporter-subunit-C
MGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>CP029667.1|AWR06984.1|1901608_1903105_+|na(+)/H(+)-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVYFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK

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Crispr_ID: CP029667_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_5

1940768-1940849

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029667_5

>merge|CP029667|5|1940768-1940849|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>CP029667|5|4|1940768-1940849|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR07676.1\|1945824_1946319_+\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|372596
CP029667.1\|AWR08532.1\|1942009_1942390_-\|glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP029667.1\|AWR06713.1\|1939535_1939832_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029667.1\|AWR07547.1\|1943517_1944057_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
CP029667.1\|AWR07928.1\|1932607_1933915_-\|feS-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP029667.1\|AWR08165.1\|1943047_1943368_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029667.1\|AWR08544.1\|1946473_1947091_+\|lysE-type-translocator-family-protein	unknown	unknown	gnl\|CDD\|224198
CP029667.1\|AWR08010.1\|1941832_1941946_-\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR06841.1\|1942547_1942904_-\|transcriptional-regulator,-Spx/MgsR-family-protein	unknown	unknown	gnl\|CDD\|239334
CP029667.1\|AWR08164.1\|1938260_1939286_-\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP029667.1\|AWR07062.1\|1945003_1945426_+\|peroxiredoxin,-Ohr-subfamily-protein	unknown	unknown	gnl\|CDD\|274649
CP029667.1\|AWR07339.1\|1939824_1940211_-\|toprim-domain-protein	unknown	unknown	gnl\|CDD\|224572
CP029667.1\|AWR06785.1\|1936733_1937555_-\|NLPA-lipofamily-protein	unknown	unknown	gnl\|CDD\|224381
CP029667.1\|AWR07501.1\|1944139_1944856_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP029667.1\|AWR07366.1\|1935101_1935953_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP029667.1\|AWR08548.1\|1936185_1936380_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP029667.1\|AWR07480.1\|1937572_1938226_-\|methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP029667.1\|AWR07165.1\|1931251_1932493_-\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP029667.1\|AWR06684.1\|1940952_1941831_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
CP029667.1\|AWR07229.1\|1934012_1934774_-\|feS-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR07676.1\|1945824_1946319_+\|acetyltransferase-domain-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP029667.1\|AWR08532.1\|1942009_1942390_-\|glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.81086e-68
CP029667.1\|AWR06713.1\|1939535_1939832_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP029667.1\|AWR07547.1\|1943517_1944057_-\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.47647e-49
CP029667.1\|AWR07928.1\|1932607_1933915_-\|feS-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.11734e-136
CP029667.1\|AWR08165.1\|1943047_1943368_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
CP029667.1\|AWR08544.1\|1946473_1947091_+\|lysE-type-translocator-family-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	9.12336e-62
CP029667.1\|AWR06841.1\|1942547_1942904_-\|transcriptional-regulator,-Spx/MgsR-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP029667.1\|AWR08164.1\|1938260_1939286_-\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
CP029667.1\|AWR07062.1\|1945003_1945426_+\|peroxiredoxin,-Ohr-subfamily-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP029667.1\|AWR07339.1\|1939824_1940211_-\|toprim-domain-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP029667.1\|AWR06785.1\|1936733_1937555_-\|NLPA-lipofamily-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
CP029667.1\|AWR07501.1\|1944139_1944856_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	1.26721e-148
CP029667.1\|AWR07366.1\|1935101_1935953_+\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
CP029667.1\|AWR08548.1\|1936185_1936380_-\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP029667.1\|AWR07480.1\|1937572_1938226_-\|methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.0876e-98
CP029667.1\|AWR07165.1\|1931251_1932493_-\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP029667.1\|AWR06684.1\|1940952_1941831_-\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	9.06932e-75
CP029667.1\|AWR07229.1\|1934012_1934774_-\|feS-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150

>CP029667.1|AWR07339.1|1939824_1940211_-|toprim-domain-protein
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP029667.1|AWR06713.1|1939535_1939832_-|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP029667.1|AWR08164.1|1938260_1939286_-|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP029667.1|AWR07480.1|1937572_1938226_-|methionine-import-system-permease-protein-MetP
MPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP029667.1|AWR06785.1|1936733_1937555_-|NLPA-lipofamily-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP029667.1|AWR08548.1|1936185_1936380_-|hypothetical-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP029667.1|AWR07366.1|1935101_1935953_+|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP029667.1|AWR07229.1|1934012_1934774_-|feS-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP029667.1|AWR07928.1|1932607_1933915_-|feS-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP029667.1|AWR07165.1|1931251_1932493_-|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF
>CP029667.1|AWR06684.1|1940952_1941831_-|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKYFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP029667.1|AWR08010.1|1941832_1941946_-|hypothetical-protein
MKEKLLGTIIWSIATFYYSRMMEIMNLAILKLKIGGS
>CP029667.1|AWR08532.1|1942009_1942390_-|glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE
>CP029667.1|AWR06841.1|1942547_1942904_-|transcriptional-regulator,-Spx/MgsR-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP029667.1|AWR08165.1|1943047_1943368_+|thioredoxin-family-protein
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP029667.1|AWR07547.1|1943517_1944057_-|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEGDMPKAPRKNRNLITLY
>CP029667.1|AWR07501.1|1944139_1944856_-|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
>CP029667.1|AWR07062.1|1945003_1945426_+|peroxiredoxin,-Ohr-subfamily-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP029667.1|AWR07676.1|1945824_1946319_+|acetyltransferase-domain-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP029667.1|AWR08544.1|1946473_1947091_+|lysE-type-translocator-family-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF

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Crispr_ID: CP029667_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_6

1984036-1984121

Unclear

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029667_6

>merge|CP029667|6|1984036-1984121|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>CP029667|6|5|1984036-1984121|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR08028.1\|1985484_1986924_-\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276808
CP029667.1\|AWR06747.1\|1995973_1996813_-\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451
CP029667.1\|AWR08585.1\|1975292_1976306_-\|glycolytic-operon-regulator	unknown	unknown	gnl\|CDD\|225263
CP029667.1\|AWR06961.1\|1978339_1979242_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029667.1\|AWR08489.1\|1974229_1975240_-\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	unknown	unknown	gnl\|CDD\|273675
CP029667.1\|AWR07398.1\|1972017_1972779_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP029667.1\|AWR06823.1\|1980645_1981590_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029667.1\|AWR07833.1\|1986931_1987213_-\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100047
CP029667.1\|AWR08996.1\|1988269_1989202_-\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029667.1\|AWR09243.1\|1984482_1985418_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029667.1\|AWR08413.1\|1994916_1995153_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP029667.1\|AWR09155.1\|1987424_1988264_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029667.1\|AWR07545.1\|1972900_1974091_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP029667.1\|AWR06561.1\|1989808_1992655_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029667.1\|AWR09020.1\|1992662_1994648_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029667.1\|AWR06708.1\|1981699_1982695_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029667.1\|AWR08932.1\|1979484_1980072_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029667.1\|AWR08999.1\|1995149_1995800_-\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029667.1\|AWR06535.1\|1982691_1983603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029667.1\|AWR08271.1\|1977008_1977638_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR08028.1\|1985484_1986924_-\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.28078e-06
CP029667.1\|AWR06747.1\|1995973_1996813_-\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.23913e-42
CP029667.1\|AWR08585.1\|1975292_1976306_-\|glycolytic-operon-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP029667.1\|AWR06961.1\|1978339_1979242_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	4.94096e-153
CP029667.1\|AWR08489.1\|1974229_1975240_-\|glyceraldehyde-3-phosphate-dehydrogenase,-type-I	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP029667.1\|AWR07398.1\|1972017_1972779_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84083e-146
CP029667.1\|AWR06823.1\|1980645_1981590_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	2.25668e-152
CP029667.1\|AWR07833.1\|1986931_1987213_-\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.13458e-26
CP029667.1\|AWR08996.1\|1988269_1989202_-\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029667.1\|AWR09243.1\|1984482_1985418_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029667.1\|AWR08413.1\|1994916_1995153_-\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP029667.1\|AWR09155.1\|1987424_1988264_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.39921e-119
CP029667.1\|AWR07545.1\|1972900_1974091_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP029667.1\|AWR06561.1\|1989808_1992655_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029667.1\|AWR09020.1\|1992662_1994648_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029667.1\|AWR06708.1\|1981699_1982695_-\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029667.1\|AWR08932.1\|1979484_1980072_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029667.1\|AWR08999.1\|1995149_1995800_-\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029667.1\|AWR06535.1\|1982691_1983603_-\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029667.1\|AWR08271.1\|1977008_1977638_-\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.85535e-05

>CP029667.1|AWR06535.1|1982691_1983603_-|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029667.1|AWR06708.1|1981699_1982695_-|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029667.1|AWR06823.1|1980645_1981590_-|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVEEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029667.1|AWR08932.1|1979484_1980072_-|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029667.1|AWR06961.1|1978339_1979242_+|NAD-dependent-epimerase/dehydratase-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP029667.1|AWR08271.1|1977008_1977638_-|hypothetical-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>CP029667.1|AWR08585.1|1975292_1976306_-|glycolytic-operon-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP029667.1|AWR08489.1|1974229_1975240_-|glyceraldehyde-3-phosphate-dehydrogenase,-type-I
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP029667.1|AWR07545.1|1972900_1974091_-|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>CP029667.1|AWR07398.1|1972017_1972779_-|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>CP029667.1|AWR09243.1|1984482_1985418_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029667.1|AWR08028.1|1985484_1986924_-|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029667.1|AWR07833.1|1986931_1987213_-|bacterial-transferase-hexapeptide-family-protein
MLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029667.1|AWR09155.1|1987424_1988264_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029667.1|AWR08996.1|1988269_1989202_-|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029667.1|AWR06561.1|1989808_1992655_-|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEHDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029667.1|AWR09020.1|1992662_1994648_-|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029667.1|AWR08413.1|1994916_1995153_-|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029667.1|AWR08999.1|1995149_1995800_-|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029667.1|AWR06747.1|1995973_1996813_-|staphyloxanthin-biosynthesis-protein,-putative
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH

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Crispr_ID: CP029667_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_7

1989439-1989519

Unclear

Consensus_repeat	Method
AGTTGGCGGGGCCCCAACATAAAGAA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029667_7

>merge|CP029667|7|1989439-1989519|CRISPRCasFinder
AGTTGGCGGGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACATAAAGAA

>CP029667|7|6|1989439-1989519|CRISPRCasFinder
AGTTGGCGGGGCCCCAACATAAAGAA	TTTCGAAAAGAAATTCTACAAACAATGCA
AGTTGGCGGGGCCCCAACATAAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR06747.1\|1995973_1996813_-\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451
CP029667.1\|AWR06961.1\|1978339_1979242_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029667.1\|AWR08014.1\|2002891_2003974_-\|type-III-restriction-enzyme,-res-subunit	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
CP029667.1\|AWR08087.1\|2002224_2002641_-\|putative-amidophosphoribosyltransferase,-ComFC	unknown	unknown	gnl\|CDD\|223970
CP029667.1\|AWR08413.1\|1994916_1995153_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP029667.1\|AWR08932.1\|1979484_1980072_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029667.1\|AWR07696.1\|1997221_1998214_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP029667.1\|AWR06823.1\|1980645_1981590_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029667.1\|AWR08996.1\|1988269_1989202_-\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029667.1\|AWR09243.1\|1984482_1985418_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029667.1\|AWR06832.1\|2001591_2002164_-\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP029667.1\|AWR09155.1\|1987424_1988264_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029667.1\|AWR07833.1\|1986931_1987213_-\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100047
CP029667.1\|AWR06561.1\|1989808_1992655_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029667.1\|AWR09020.1\|1992662_1994648_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029667.1\|AWR08028.1\|1985484_1986924_-\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276808
CP029667.1\|AWR07281.1\|1998646_2001178_-\|preprotein-translocase,-SecA-subunit	unknown	unknown	gnl\|CDD\|237259
CP029667.1\|AWR08999.1\|1995149_1995800_-\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029667.1\|AWR06535.1\|1982691_1983603_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029667.1\|AWR06708.1\|1981699_1982695_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR06747.1\|1995973_1996813_-\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.23913e-42
CP029667.1\|AWR06961.1\|1978339_1979242_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	4.94096e-153
CP029667.1\|AWR08014.1\|2002891_2003974_-\|type-III-restriction-enzyme,-res-subunit	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.55868e-179
CP029667.1\|AWR08087.1\|2002224_2002641_-\|putative-amidophosphoribosyltransferase,-ComFC	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	9.42115e-41
CP029667.1\|AWR08413.1\|1994916_1995153_-\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP029667.1\|AWR08932.1\|1979484_1980072_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029667.1\|AWR07696.1\|1997221_1998214_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP029667.1\|AWR06823.1\|1980645_1981590_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	2.25668e-152
CP029667.1\|AWR08996.1\|1988269_1989202_-\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029667.1\|AWR09243.1\|1984482_1985418_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029667.1\|AWR06832.1\|2001591_2002164_-\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP029667.1\|AWR09155.1\|1987424_1988264_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.39921e-119
CP029667.1\|AWR07833.1\|1986931_1987213_-\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.13458e-26
CP029667.1\|AWR06561.1\|1989808_1992655_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029667.1\|AWR09020.1\|1992662_1994648_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029667.1\|AWR08028.1\|1985484_1986924_-\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.28078e-06
CP029667.1\|AWR07281.1\|1998646_2001178_-\|preprotein-translocase,-SecA-subunit	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP029667.1\|AWR08999.1\|1995149_1995800_-\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029667.1\|AWR06535.1\|1982691_1983603_-\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029667.1\|AWR06708.1\|1981699_1982695_-\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172

>CP029667.1|AWR08996.1|1988269_1989202_-|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029667.1|AWR09155.1|1987424_1988264_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029667.1|AWR07833.1|1986931_1987213_-|bacterial-transferase-hexapeptide-family-protein
MLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029667.1|AWR08028.1|1985484_1986924_-|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029667.1|AWR09243.1|1984482_1985418_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029667.1|AWR06535.1|1982691_1983603_-|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029667.1|AWR06708.1|1981699_1982695_-|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029667.1|AWR06823.1|1980645_1981590_-|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVEEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029667.1|AWR08932.1|1979484_1980072_-|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029667.1|AWR06961.1|1978339_1979242_+|NAD-dependent-epimerase/dehydratase-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP029667.1|AWR06561.1|1989808_1992655_-|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEHDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029667.1|AWR09020.1|1992662_1994648_-|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029667.1|AWR08413.1|1994916_1995153_-|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029667.1|AWR08999.1|1995149_1995800_-|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029667.1|AWR06747.1|1995973_1996813_-|staphyloxanthin-biosynthesis-protein,-putative
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP029667.1|AWR07696.1|1997221_1998214_-|peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP029667.1|AWR07281.1|1998646_2001178_-|preprotein-translocase,-SecA-subunit
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP029667.1|AWR06832.1|2001591_2002164_-|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP029667.1|AWR08087.1|2002224_2002641_-|putative-amidophosphoribosyltransferase,-ComFC
MKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP029667.1|AWR08014.1|2002891_2003974_-|type-III-restriction-enzyme,-res-subunit
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRKRQTILLYAVTGAGKTEMMFQGIQYARIQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSRQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKNLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNKKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPTGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

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Crispr_ID: CP029667_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_8

2159794-2159886

Orphan

Consensus_repeat	Method
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029667_8

>merge|CP029667|8|2159794-2159886|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTTATGCAGTTGTGCCTTAGCATCCAACTGCGTTCCTCTTCACCTTTAG

>CP029667|8|7|2159794-2159886|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CGATTAGAGGCTTTTATGCAGTTGTGCCT
TAGCATCCAACTGCGTTCCTCTTCACCTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR08071.1\|2165533_2166829_-\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224004
CP029667.1\|AWR08805.1\|2160103_2160739_-\|hhH-GPD-superbase-excision-DNA-repair-family-protein	unknown	unknown	gnl\|CDD\|225140
CP029667.1\|AWR08116.1\|2158837_2159665_-\|periplasmic-binding-family-protein	unknown	unknown	gnl\|CDD\|238563
CP029667.1\|AWR07212.1\|2169468_2170092_-\|tandem-five-TM-family-protein	unknown	unknown	gnl\|CDD\|335700
CP029667.1\|AWR08886.1\|2168260_2169199_-\|protein-IolS	unknown	unknown	gnl\|CDD\|381309
CP029667.1\|AWR08594.1\|2153704_2154493_-\|alpha/beta-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223669
CP029667.1\|AWR08218.1\|2155539_2156046_-\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR07943.1\|2166868_2167345_-\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|366181
CP029667.1\|AWR07860.1\|2156965_2157685_-\|HAD-hydrolase,-IA,-variant-1-family-protein	unknown	unknown	gnl\|CDD\|223943
CP029667.1\|AWR09160.1\|2161126_2162788_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP029667.1\|AWR08353.1\|2157739_2158726_-\|fecCD-transport-family-protein	unknown	unknown	gnl\|CDD\|376439
CP029667.1\|AWR08729.1\|2167513_2168050_-\|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-YwqN	unknown	unknown	gnl\|CDD\|223728
CP029667.1\|AWR08038.1\|2164984_2165491_-\|ywhD-family-protein	unknown	unknown	gnl\|CDD\|378039
CP029667.1\|AWR08629.1\|2153079_2153454_+\|transcriptional-regulator-SarA	unknown	unknown	gnl\|CDD\|130944
CP029667.1\|AWR06661.1\|2156181_2156982_-\|alpha/beta-hydrolase-fold-family-protein	unknown	unknown	gnl\|CDD\|223669
CP029667.1\|AWR08691.1\|2151634_2152132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377396
CP029667.1\|AWR08248.1\|2163475_2164486_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
CP029667.1\|AWR08940.1\|2162784_2163201_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226896
CP029667.1\|AWR06735.1\|2154661_2155378_-\|putative-membrane-protein	unknown	unknown	unknown
CP029667.1\|AWR08441.1\|2151010_2151364_+\|integrase-core-domain-protein	unknown	unknown	gnl\|CDD\|225382

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR08071.1\|2165533_2166829_-\|HD-domain-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
CP029667.1\|AWR08805.1\|2160103_2160739_-\|hhH-GPD-superbase-excision-DNA-repair-family-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90
CP029667.1\|AWR08116.1\|2158837_2159665_-\|periplasmic-binding-family-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.32108e-72
CP029667.1\|AWR07212.1\|2169468_2170092_-\|tandem-five-TM-family-protein	gnl\|CDD\|335700	pfam04276, DUF443, Protein of unknown function (DUF443). Family of uncharacterized proteins.	2.9419e-60
CP029667.1\|AWR08886.1\|2168260_2169199_-\|protein-IolS	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	7.3194e-168
CP029667.1\|AWR08594.1\|2153704_2154493_-\|alpha/beta-hydrolase-family-protein	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
CP029667.1\|AWR07943.1\|2166868_2167345_-\|acetyltransferase-domain-protein	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
CP029667.1\|AWR08940.1\|2162784_2163201_-\|hypothetical-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	2.62525e-58
CP029667.1\|AWR09160.1\|2161126_2162788_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
CP029667.1\|AWR08353.1\|2157739_2158726_-\|fecCD-transport-family-protein	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.17074e-49
CP029667.1\|AWR08729.1\|2167513_2168050_-\|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-YwqN	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
CP029667.1\|AWR08038.1\|2164984_2165491_-\|ywhD-family-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	1.08203e-97
CP029667.1\|AWR08629.1\|2153079_2153454_+\|transcriptional-regulator-SarA	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
CP029667.1\|AWR08691.1\|2151634_2152132_+\|hypothetical-protein	gnl\|CDD\|377396	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ. DMT_YdcZ is a family of putative inner membrane exporters from both Gram-positive and Gram-negative bacteria.	9.02024e-35
CP029667.1\|AWR08248.1\|2163475_2164486_-\|alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
CP029667.1\|AWR07860.1\|2156965_2157685_-\|HAD-hydrolase,-IA,-variant-1-family-protein	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
CP029667.1\|AWR06661.1\|2156181_2156982_-\|alpha/beta-hydrolase-fold-family-protein	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17592e-26
CP029667.1\|AWR08441.1\|2151010_2151364_+\|integrase-core-domain-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.7431e-37

>CP029667.1|AWR08116.1|2158837_2159665_-|periplasmic-binding-family-protein
MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>CP029667.1|AWR08353.1|2157739_2158726_-|fecCD-transport-family-protein
MNVIIDERKENAMTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>CP029667.1|AWR07860.1|2156965_2157685_-|HAD-hydrolase,-IA,-variant-1-family-protein
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>CP029667.1|AWR06661.1|2156181_2156982_-|alpha/beta-hydrolase-fold-family-protein
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>CP029667.1|AWR08218.1|2155539_2156046_-|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>CP029667.1|AWR06735.1|2154661_2155378_-|putative-membrane-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>CP029667.1|AWR08594.1|2153704_2154493_-|alpha/beta-hydrolase-family-protein
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>CP029667.1|AWR08629.1|2153079_2153454_+|transcriptional-regulator-SarA
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>CP029667.1|AWR08691.1|2151634_2152132_+|hypothetical-protein
MNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>CP029667.1|AWR08441.1|2151010_2151364_+|integrase-core-domain-protein
MKPLLPKSITMDRGKEFALFEEIEDELNCSIYFSDLGCPYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQINARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
>CP029667.1|AWR08805.1|2160103_2160739_-|hhH-GPD-superbase-excision-DNA-repair-family-protein
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>CP029667.1|AWR09160.1|2161126_2162788_-|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>CP029667.1|AWR08940.1|2162784_2163201_-|hypothetical-protein
MDKKVSIQTKQVLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>CP029667.1|AWR08248.1|2163475_2164486_-|alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>CP029667.1|AWR08038.1|2164984_2165491_-|ywhD-family-protein
MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>CP029667.1|AWR08071.1|2165533_2166829_-|HD-domain-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>CP029667.1|AWR07943.1|2166868_2167345_-|acetyltransferase-domain-protein
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>CP029667.1|AWR08729.1|2167513_2168050_-|putative-NAD(P)H-dependent-FMN-containing-oxidoreductase-YwqN
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>CP029667.1|AWR08886.1|2168260_2169199_-|protein-IolS
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED
>CP029667.1|AWR07212.1|2169468_2170092_-|tandem-five-TM-family-protein
MLCESKIINKNPKYRIIKYNDEYLMVDIISTWISLFFPFINWFIPKEYVKISREEFENLNIVKPAKKNVFWPVAGSSALLGVALRKYTHLLDIQLDKKLVIAICCITFIGILIFYVRLIKKSSLNIYNTKNKRSKIFLIPTLKNVCFTLFGYILFGGLTMLFLDALLSMSYQNIIVYFVWIAVIMGFFLVNIALIIDKNIHVILKNQ

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Crispr_ID: CP029667_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_9

2404086-2404187

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029667_9

>merge|CP029667|9|2404086-2404187|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>CP029667|9|8|2404086-2404187|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR08245.1\|2403112_2404069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
CP029667.1\|AWR07671.1\|2394607_2395312_+\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029667.1\|AWR07705.1\|2399423_2400692_-\|xanthine-permease-family-protein	unknown	unknown	gnl\|CDD\|274468
CP029667.1\|AWR08770.1\|2401782_2402190_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP029667.1\|AWR08624.1\|2413202_2413466_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
CP029667.1\|AWR08907.1\|2410314_2410941_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP029667.1\|AWR08854.1\|2409984_2410242_+\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR07936.1\|2395704_2396241_+\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR07595.1\|2407761_2408331_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP029667.1\|AWR07757.1\|2393981_2394209_+\|putative-transposase	unknown	unknown	unknown
CP029667.1\|AWR07405.1\|2406514_2407270_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP029667.1\|AWR09045.1\|2400691_2401270_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP029667.1\|AWR09222.1\|2411644_2412226_-\|histidine-phosphatase-super-family-protein	unknown	unknown	gnl\|CDD\|223483
CP029667.1\|AWR08887.1\|2402332_2402995_+\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR06759.1\|2411195_2411579_+\|putative-membrane-protein	unknown	unknown	unknown
CP029667.1\|AWR07528.1\|2412651_2412903_-\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
CP029667.1\|AWR07819.1\|2405045_2406434_+\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP029667.1\|AWR07389.1\|2408346_2409870_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP029667.1\|AWR07543.1\|2396353_2397895_-\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614
CP029667.1\|AWR07193.1\|2397919_2399386_-\|inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR08245.1\|2403112_2404069_+\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
CP029667.1\|AWR07671.1\|2394607_2395312_+\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	9.65175e-08
CP029667.1\|AWR07705.1\|2399423_2400692_-\|xanthine-permease-family-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.75897e-170
CP029667.1\|AWR08770.1\|2401782_2402190_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
CP029667.1\|AWR08624.1\|2413202_2413466_+\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0037414
CP029667.1\|AWR08907.1\|2410314_2410941_+\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.67126e-71
CP029667.1\|AWR07595.1\|2407761_2408331_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP029667.1\|AWR07389.1\|2408346_2409870_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP029667.1\|AWR09045.1\|2400691_2401270_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP029667.1\|AWR09222.1\|2411644_2412226_-\|histidine-phosphatase-super-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	7.98269e-49
CP029667.1\|AWR07528.1\|2412651_2412903_-\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09
CP029667.1\|AWR07819.1\|2405045_2406434_+\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP029667.1\|AWR07405.1\|2406514_2407270_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.03864e-88
CP029667.1\|AWR07543.1\|2396353_2397895_-\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP029667.1\|AWR07193.1\|2397919_2399386_-\|inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0

>CP029667.1|AWR08245.1|2403112_2404069_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP029667.1|AWR08887.1|2402332_2402995_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP029667.1|AWR08770.1|2401782_2402190_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>CP029667.1|AWR09045.1|2400691_2401270_-|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP029667.1|AWR07705.1|2399423_2400692_-|xanthine-permease-family-protein
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP029667.1|AWR07193.1|2397919_2399386_-|inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP029667.1|AWR07543.1|2396353_2397895_-|GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP029667.1|AWR07936.1|2395704_2396241_+|hypothetical-protein
MHNNNEFNKKLKDFIGSDKRMALVKGYVNEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNTIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP029667.1|AWR07671.1|2394607_2395312_+|pemK-like-family-protein
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP029667.1|AWR07757.1|2393981_2394209_+|putative-transposase
MVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
>CP029667.1|AWR07819.1|2405045_2406434_+|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFDSNDNAALTSH
>CP029667.1|AWR07405.1|2406514_2407270_-|NADPH-dependent-oxidoreductase
MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP029667.1|AWR07595.1|2407761_2408331_+|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP029667.1|AWR07389.1|2408346_2409870_+|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP029667.1|AWR08854.1|2409984_2410242_+|hypothetical-protein
MLKVCTSRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLVQPIMQLFIDKAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP029667.1|AWR08907.1|2410314_2410941_+|hypothetical-protein
MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP029667.1|AWR06759.1|2411195_2411579_+|putative-membrane-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
>CP029667.1|AWR09222.1|2411644_2412226_-|histidine-phosphatase-super-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYDKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE
>CP029667.1|AWR07528.1|2412651_2412903_-|transglycosylase-associated-family-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>CP029667.1|AWR08624.1|2413202_2413466_+|hypothetical-protein
MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHHHEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK

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Crispr_ID: CP029667_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029667_10

2880104-2880277

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACATAGAAGATGGCGGAAAG	PILER-CR
TTACAATAATGTGCAAGTTGGCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029667_10

>merge|CP029667|10|2880104-2880277|PILER-CR,CRISPRCasFinder
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGATGGCGGAAAGTCAGGTTACAATAATGTGCAAGTTGGGGT

>CP029667|10|1|2880104-2880248|PILER-CR
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCA	AGTTGGCGGGGCCCCAA
CAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCC	CAACATAGAAGATGGC
GGAAAG

>CP029667|10|9|2880198-2880277|CRISPRCasFinder
TTACAATAATGTGCAAGTTGGCGG	GGCCCCAACATAGAAGATGGCGGAAAGTCAGG
TTACAATAATGTGCAAGTTGGGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP029667.1\|AWR08049.1\|2875483_2876242_+\|imidazoleglycerol-phosphate-synthase,-cyclase-subunit	unknown	unknown	gnl\|CDD\|234996
CP029667.1\|AWR06965.1\|2886214_2886811_+\|capsular-exopolysaccharide-family-domain-protein	unknown	unknown	gnl\|CDD\|349772
CP029667.1\|AWR07054.1\|2877123_2877243_+\|hypothetical-protein	unknown	unknown	unknown
CP029667.1\|AWR07691.1\|2882629_2883742_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|274866
CP029667.1\|AWR06762.1\|2876238_2876871_+\|phosphoribosyl-ATP-diphosphatase	unknown	unknown	gnl\|CDD\|235067
CP029667.1\|AWR07604.1\|2885439_2886102_+\|membrane-protein-CapA1	unknown	unknown	gnl\|CDD\|226453
CP029667.1\|AWR07839.1\|2870781_2871396_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|172153
CP029667.1\|AWR07651.1\|2874211_2874790_+\|imidazole-glycerol-phosphate-synthase,-glutamine-amidotransferase-subunit	unknown	unknown	gnl\|CDD\|171871
CP029667.1\|AWR07540.1\|2888312_2888789_+\|peptide-methionine-sulfoxide-reductase-family-protein	unknown	unknown	gnl\|CDD\|235497
CP029667.1\|AWR07290.1\|2873636_2874215_+\|imidazoleglycerol-phosphate-dehydratase-family-protein	unknown	unknown	gnl\|CDD\|153419
CP029667.1\|AWR09132.1\|2877960_2880006_+\|lipase-1	unknown	unknown	gnl\|CDD\|224001
CP029667.1\|AWR06862.1\|2888867_2889479_+\|flavin-reductase-like-domain-protein	unknown	unknown	gnl\|CDD\|224766
CP029667.1\|AWR09101.1\|2871388_2872639_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|172308
CP029667.1\|AWR07462.1\|2884031_2884592_+\|biofilm-operon-icaADBC-HTH-type-negative-transcriptional-regulator-IcaR	unknown	unknown	gnl\|CDD\|376089
CP029667.1\|AWR08079.1\|2881491_2882364_-\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	unknown	unknown	gnl\|CDD\|188448
CP029667.1\|AWR06632.1\|2872654_2873668_+\|aminotransferase-class-I-and-II-family-protein	unknown	unknown	gnl\|CDD\|223157
CP029667.1\|AWR08257.1\|2886807_2887575_+\|PHP-domain-protein	unknown	unknown	gnl\|CDD\|226870
CP029667.1\|AWR08779.1\|2887809_2888310_+\|acetyltransferase-family-protein	unknown	unknown	gnl\|CDD\|379326
CP029667.1\|AWR08432.1\|2874782_2875487_+\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|172156
CP029667.1\|AWR09171.1\|2880452_2881505_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226446

Protein	Function_ID	Function_description	E-value
CP029667.1\|AWR08049.1\|2875483_2876242_+\|imidazoleglycerol-phosphate-synthase,-cyclase-subunit	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	5.46363e-153
CP029667.1\|AWR06965.1\|2886214_2886811_+\|capsular-exopolysaccharide-family-domain-protein	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	4.06213e-79
CP029667.1\|AWR06762.1\|2876238_2876871_+\|phosphoribosyl-ATP-diphosphatase	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	1.98613e-110
CP029667.1\|AWR07691.1\|2882629_2883742_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|274866	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase. Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages.	0
CP029667.1\|AWR09171.1\|2880452_2881505_-\|acyltransferase-family-protein	gnl\|CDD\|226446	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism].	5.4483e-115
CP029667.1\|AWR07651.1\|2874211_2874790_+\|imidazole-glycerol-phosphate-synthase,-glutamine-amidotransferase-subunit	gnl\|CDD\|171871	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.76981e-127
CP029667.1\|AWR07604.1\|2885439_2886102_+\|membrane-protein-CapA1	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	5.65863e-89
CP029667.1\|AWR07839.1\|2870781_2871396_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|172153	PRK13584, hisG, ATP phosphoribosyltransferase.	2.62287e-133
CP029667.1\|AWR07290.1\|2873636_2874215_+\|imidazoleglycerol-phosphate-dehydratase-family-protein	gnl\|CDD\|153419	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and some eubacteria while they are encoded as bifunctional enzymes in other eubacteria, such that the enzyme is fused to histidinol-phosphate phosphatase, the penultimate enzyme of the histidine biosynthesis pathway. The histidine biosynthesis pathway is a potential target for development of herbicides, and IGPD is a target for the triazole phosphonate herbicides.	2.40504e-103
CP029667.1\|AWR07540.1\|2888312_2888789_+\|peptide-methionine-sulfoxide-reductase-family-protein	gnl\|CDD\|235497	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase.	1.4924e-106
CP029667.1\|AWR06862.1\|2888867_2889479_+\|flavin-reductase-like-domain-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.22537e-45
CP029667.1\|AWR09132.1\|2877960_2880006_+\|lipase-1	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.54011e-82
CP029667.1\|AWR09101.1\|2871388_2872639_+\|histidinol-dehydrogenase	gnl\|CDD\|172308	PRK13770, PRK13770, histidinol dehydrogenase; Provisional.	0
CP029667.1\|AWR07462.1\|2884031_2884592_+\|biofilm-operon-icaADBC-HTH-type-negative-transcriptional-regulator-IcaR	gnl\|CDD\|376089	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain. IcaR belongs to the tetracycline repressor (TetR) family of proteins, which are involved in a wide variety of gene regulations. It binds to a 42 bp region immediately upstream of the icaA gene. This entry represents the C-terminal domain which is involved in dimerization.	2.88245e-28
CP029667.1\|AWR06632.1\|2872654_2873668_+\|aminotransferase-class-I-and-II-family-protein	gnl\|CDD\|223157	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism].	5.6943e-85
CP029667.1\|AWR08257.1\|2886807_2887575_+\|PHP-domain-protein	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.38228e-144
CP029667.1\|AWR08779.1\|2887809_2888310_+\|acetyltransferase-family-protein	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.30563e-13
CP029667.1\|AWR08432.1\|2874782_2875487_+\|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase	gnl\|CDD\|172156	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional.	2.24553e-168
CP029667.1\|AWR08079.1\|2881491_2882364_-\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	gnl\|CDD\|188448	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase. A common motif in bacterial biosynthesis of polysaccharide for export is modification that follows polymerization. This model describes a subfamily of polysaccharide N-deacetylases that acts on poly-beta-1,6-N-acetyl-D-glyscosamine as produced by Staphylococcus epidermidis and S. aureus. The end product in these species is designated polysaccharide intercellular adhesin (PIA), and this gene designated icaB (intercellular adhesion protein B). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Cellular processes, Pathogenesis].	1.47819e-150

>CP029667.1|AWR09132.1|2877960_2880006_+|lipase-1
MMKSQNKYSIRKFSVGASSILIATLLFLSGGQAQAAEKQVNMGNSQEDTVTAQSIGDQQTRENANYQRENGVDEQQHTENLTKNLHNDKTISEENHRKTDDLNKDQLKDDKKSSLNNKNIQRDTTKNNNANPSDVNQGLEQAINDGKQSKVASQQQSKEADNSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNETEIEKVQPQQNNQANDKITNYNFNNEQEVKPQKDEKTLSVSDLKNNQKSPVEPTKDNDKKNGLNLLKSSAVATLPNKGTKELTAKAKDDQTNKVAKQGQYKNQDPIVLVHGFNGFTDDINPSVLAHYWGGNKMNIRQDLEENGYKAYEASISAFGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKTYEGIYKDWKPGQKVHLVGHSMGGQTIRQLEELLRNGNREEIEYQKKHGGEISPLFKGNHDNMISSITTLGTPHNGTHASDLAGNEALVRQIVFDIGKMFGNKNSRVDFGLAQWGLKQKPNESYIDYVKRVKQSNLWKSKDNGFYDLTREGATDLNRKTSLNPNIVYKTYTGEATHKALNSDRQKADLNMFFPFVITGNLIGKATEKEWRENDGLVSVISSQHPFNQAYTKATDKIQKGIWQVTPTKHDWDHVDFVGQDSSDTVRTREELQDFWHHLADDLVKTEKLTDTKQA
>CP029667.1|AWR07054.1|2877123_2877243_+|hypothetical-protein
MNRYNEVMKGKNGEKAKELCLSLLPINIIVVFTFFVFIL
>CP029667.1|AWR06762.1|2876238_2876871_+|phosphoribosyl-ATP-diphosphatase
MTKYKIDFSKGLVPAILQDNQTKQVLMLGYMNQEAFDKTIEDGVVCFYSRSKQRLWTKGETSGHTQRVKDIHVDCDNDTILIDVIPNGPTCHTGSQSCFNTEVPFSVQTLAQTVQDSAQSNNEKSYTKYLLTEGIEKITKKYGEEAFEVVIEAIKGDKKAFVSEVADELYHLFVLMHALGVDFSEIEAELARRHHKRNNFKGERQNIEQW
>CP029667.1|AWR08049.1|2875483_2876242_+|imidazoleglycerol-phosphate-synthase,-cyclase-subunit
MIKKRIIPCLDVKDGRVVKGIQFKGLRDIGNPVDLAMYYNEAGADELVFLDISKTEEGHSLMLEVIEQTASRLFIPLTVGGGIQSLDDITQLLNHGADKVSLNSSALKNPQLIKQASDKFGRQCICIAIDSYYDPERKAHYCCTTGGKKMTNIKVYDWVQQVEQLGAGELLVTSMGHDGMKQGFDIEHLANIKSLVNIPIIASGGGGNAQHFVELFDQTDVSAGLAASILHDRETTVQSIKEVIRQGGIAVR
>CP029667.1|AWR08432.1|2874782_2875487_+|1-(5-phosphoribosyl)-5-[(5--phosphoribosylamino)methylideneamino]imidazole-4--carboxamide-isomerase
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRRLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQASFWEGLK
>CP029667.1|AWR07651.1|2874211_2874790_+|imidazole-glycerol-phosphate-synthase,-glutamine-amidotransferase-subunit
MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKRLNLNAILAKNTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVSKHPMLNQDVYFVHSYQAPMSENVIAYAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQGGFIND
>CP029667.1|AWR07290.1|2873636_2874215_+|imidazoleglycerol-phosphate-dehydratase-family-protein
MIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
>CP029667.1|AWR06632.1|2872654_2873668_+|aminotransferase-class-I-and-II-family-protein
MIYIDKNESPVTPLDEKTMTSIISATPYNLYPDAAYEQFKEAYAKFYGLSPEQIIAGNGSDELIQKLMLIMPEGPALTLNPDFFMYQAYAAQVNREIAFVDAGSDLTFDLETILTKIDEVQPSFFIMSNPHNPSGKQFDTAFLTAIADKMKALNGYFVIDEAYLDYGTAYDVELAPHILRMRTLSKAFGIAGLRLGVLISTAGTIKHIQKIEHPYPLNVFTLNIATYIFRHREETRQFLTMQRQLAEQLKQIFDTHVADKMSVFPSNANFVLTKGSAAQQLGQYVYEQGFKPRFYDEPVMKGYVRYSIATASQLKQLEEIVKEWSAKYDLSKTTKHS
>CP029667.1|AWR09101.1|2871388_2872639_+|histidinol-dehydrogenase
MLNAQQFLNQFSLEAPLDESLYPIIRDICQEVKVHGDKALKMYNLTFDHTKTDHLEISHEQIKAAFDTLDEKTKQALQQSYERIKAYQESIKQTNQQLEESVECYEIYHPLESVGIYVPGGKASYPSTVLMTATLAQVAGVENIVVVTPPQPNGVSQEVLAACYITQVDQVFQVGGAQSIAALTYGTETIPKVDKIVGPGNQFVAYAKKYLFGQVGIDQIAGPTEIALIIDETADLDAIVYDVFAQAEHDELARTYAISEDAQVLKDLESRIAKALPNVDRYDIVSKSIANQHYLIHASNFDEACHVMNTIAPEHASIQTVNPQPYIEKVKYVGALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGLSVNDFLTRNTVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILIRQS
>CP029667.1|AWR07839.1|2870781_2871396_+|ATP-phosphoribosyltransferase
MLRIAIAKGRLMDSLINYLDVIEYTTLSETLKNRERQLLLSVDNIECILVKGSDVPIYVEQGMADIGIVGSDILDERQYNVNNLLNMPFGACHFAVAAKPETTNYRKIATSYVHTAETYFKSKGIDVELIKLNGSVELAGVVDMVDGIVDIVQTGTTLKANGLVEKQHISDINARLITNKAAYFKKSQLIEQFIRSLEVSIANA
>CP029667.1|AWR09171.1|2880452_2881505_-|acyltransferase-family-protein
MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIILSQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSSFNKQFIENVLLGQWYGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYYPLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWNVTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTNIFEDNTMVFLAISLLFILGLCIGVGMILREFYIFRFIIGKQPYKLNINAY
>CP029667.1|AWR08079.1|2881491_2882364_-|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase
MKYRKFIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLNNFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINFDDMDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFETHTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPVIKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD
>CP029667.1|AWR07691.1|2882629_2883742_-|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MDELEGITFLLACYNESETIEDTLSNVLALKYEKKEIIIINDGSSDNTAELIYKIKENNDFIFVDLQENRGKANALNQGIKQASYDYVMCLDADTIVDQDAPYYMIENFKHDPKLGAVTGNPRIRNKSSILGKIQTIEYASLIGCIKRSQTLAGAVNTISGVFTLFKKSAVVDVGYWDTDMITEDIAVSWKLHLRGYRIKYEPLAMCWMLVPETLGGLWKQRVRWAQGGHEVLLRDFFSTMKTKRFPLYILMFEQIISILWVYIVLLYLGYLFITANFLDYTFMTYSFSIFLLSSFTMTFINVIQFTVALFIDSRYEKKNMAGLIFVSWYPTVYWIINAAVVLVAFPKALKRKKGGYATWSSPDRGNTQR
>CP029667.1|AWR07462.1|2884031_2884592_+|biofilm-operon-icaADBC-HTH-type-negative-transcriptional-regulator-IcaR
MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLNIFLKK
>CP029667.1|AWR07604.1|2885439_2886102_+|membrane-protein-CapA1
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
>CP029667.1|AWR06965.1|2886214_2886811_+|capsular-exopolysaccharide-family-domain-protein
MFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNRDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
>CP029667.1|AWR08257.1|2886807_2887575_+|PHP-domain-protein
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLDRPTKPGKVKSFLKWF
>CP029667.1|AWR08779.1|2887809_2888310_+|acetyltransferase-family-protein
MVLRKVIMQDLDQIIALENIGFSPEEAATREALKLRIEQIQETFIVAEKNDEVIGYINGPVIKERYISDDLFKNVSTNNSEGGYISVLGLVVAPNYQGQGIAGRLLNYFETLAKNHHRHGVTLTCRESLISFYEKYGYRNEGVSESCHGGIKWYNLVKNIKKDDEV
>CP029667.1|AWR07540.1|2888312_2888789_+|peptide-methionine-sulfoxide-reductase-family-protein
MAVVYVAGGCLWGVEAFFATIPGIIHTEAGRANGRSSKLDGPYDGYAECVKLHFDDRMLTITDIMNYLFEIIDPYSVNQQGNDIGQKYRTGLYSCVDDHLIEARQFIERRKDRDQIAVEVLPLSNYIKSAEEHQQHLEKYPEDMHMCHISKDLLNKYK
>CP029667.1|AWR06862.1|2888867_2889479_+|flavin-reductase-like-domain-protein
MYTFDAQSLTARENYKLLIGSIIPRPIAFVTTLNQDASVNAAPFSFFNIVNNHPPMIAIAVQRAGGKRKDTALNIERTGDFVVHITDEDNVQDINETAAPLAYGDSELSRTELSLLTSTTIKTPGIKDAKMRFECKLSQMILLGDVLDGADLIIGEIVTYHIDDSIYEGDFKINPHALQAVSRLAGNDYAKLGGIFTIKRPEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029667_1	1.2\|423545\|36\|CP029667\|CRT	423545-423580	36	CP029667.1	1674012-1674047	0	1.0
CP029667_5	5.1\|1940792\|34\|CP029667\|CRISPRCasFinder	1940792-1940825	34	CP029667.1	1376576-1376609	0	1.0
CP029667_5	5.1\|1940792\|34\|CP029667\|CRISPRCasFinder	1940792-1940825	34	CP029667.1	1465768-1465801	0	1.0
CP029667_10	10.1\|2880157\|17\|CP029667\|PILER-CR	2880157-2880173	17	CP029667.1	2524583-2524599	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	147720-147735	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	771536-771551	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	771594-771609	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1376548-1376563	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1461417-1461432	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1465814-1465829	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1673959-1673974	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1774587-1774602	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1940495-1940510	0	1.0
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	2442808-2442823	0	1.0
CP029667_1	1.2\|423545\|36\|CP029667\|CRT	423545-423580	36	CP029667.1	981248-981283	1	0.972
CP029667_3	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	CP029667.1	147703-147735	1	0.97
CP029667_3	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	CP029667.1	1159701-1159733	1	0.97
CP029667_3	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	CP029667.1	1465814-1465846	1	0.97
CP029667_3	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	CP029667.1	1673959-1673991	1	0.97
CP029667_3	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	CP029667.1	1984023-1984055	1	0.97
CP029667_4	4.2\|1891825\|26\|CP029667\|CRT	1891825-1891850	26	CP029667.1	1984010-1984035	1	0.962
CP029667_6	6.1\|1984066\|26\|CP029667\|CRISPRCasFinder	1984066-1984091	26	CP029667.1	2021074-2021099	1	0.962
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	981248-981276	1	0.966
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	2442636-2442664	1	0.966
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	2442691-2442719	1	0.966
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	334287-334302	1	0.938
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	981137-981152	1	0.938
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1159718-1159733	1	0.938
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1419761-1419776	1	0.938
CP029667_10	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	CP029667.1	1677927-1677942	1	0.938
CP029667_1	1.1\|423489\|33\|CP029667\|CRT	423489-423521	33	CP029667.1	147703-147735	2	0.939
CP029667_1	1.1\|423489\|33\|CP029667\|CRT	423489-423521	33	CP029667.1	1465814-1465846	2	0.939
CP029667_1	1.1\|423489\|33\|CP029667\|CRT	423489-423521	33	CP029667.1	1673959-1673991	2	0.939
CP029667_1	1.1\|423489\|33\|CP029667\|CRT	423489-423521	33	CP029667.1	1984023-1984055	2	0.939
CP029667_1	1.2\|423545\|36\|CP029667\|CRT	423545-423580	36	CP029667.1	771635-771670	2	0.944
CP029667_1	1.2\|423545\|36\|CP029667\|CRT	423545-423580	36	CP029667.1	1159759-1159794	2	0.944
CP029667_1	1.3\|423604\|33\|CP029667\|CRT	423604-423636	33	CP029667.1	147703-147735	2	0.939
CP029667_1	1.3\|423604\|33\|CP029667\|CRT	423604-423636	33	CP029667.1	1376531-1376563	2	0.939
CP029667_1	1.3\|423604\|33\|CP029667\|CRT	423604-423636	33	CP029667.1	1465814-1465846	2	0.939
CP029667_1	1.3\|423604\|33\|CP029667\|CRT	423604-423636	33	CP029667.1	1673959-1673991	2	0.939
CP029667_1	1.3\|423604\|33\|CP029667\|CRT	423604-423636	33	CP029667.1	1984023-1984055	2	0.939
CP029667_3	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	CP029667.1	1376531-1376563	2	0.939
CP029667_4	4.2\|1891825\|26\|CP029667\|CRT	1891825-1891850	26	CP029667.1	2442828-2442853	2	0.923
CP029667_4	4.4\|1891939\|26\|CP029667\|CRT	1891939-1891964	26	CP029667.1	2021074-2021099	2	0.923
CP029667_4	4.5\|1891965\|33\|CP029667\|CRISPRCasFinder	1891965-1891997	33	CP029667.1	1940488-1940520	2	0.939
CP029667_6	6.1\|1984066\|26\|CP029667\|CRISPRCasFinder	1984066-1984091	26	CP029667.1	2021018-2021043	2	0.923
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	232121-232149	2	0.931
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	771642-771670	2	0.931
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	1159766-1159794	2	0.931
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	1674012-1674040	2	0.931
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	1872297-1872325	2	0.931
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	CP029667.1	1940755-1940783	2	0.931

1. spacer 1.2|423545|36|CP029667|CRT matches to position: 1674012-1674047, mismatch: 0, identity: 1.0

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcaaaaagaaattctacagacaatgca	Protospacer
************************************

2. spacer 5.1|1940792|34|CP029667|CRISPRCasFinder matches to position: 1376576-1376609, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

3. spacer 5.1|1940792|34|CP029667|CRISPRCasFinder matches to position: 1465768-1465801, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

4. spacer 10.1|2880157|17|CP029667|PILER-CR matches to position: 2524583-2524599, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

5. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 147720-147735, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

6. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 771536-771551, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

7. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 771594-771609, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

8. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1376548-1376563, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

9. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1461417-1461432, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

10. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1465814-1465829, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

11. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1673959-1673974, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

12. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1774587-1774602, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

13. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1940495-1940510, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

14. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 2442808-2442823, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

15. spacer 1.2|423545|36|CP029667|CRT matches to position: 981248-981283, mismatch: 1, identity: 0.972

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacagacaatgca	Protospacer
***********.************************

16. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to position: 147703-147735, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

17. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to position: 1159701-1159733, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttactataatg	Protospacer
************************** ******

18. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to position: 1465814-1465846, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

19. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to position: 1673959-1673991, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

20. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to position: 1984023-1984055, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

21. spacer 4.2|1891825|26|CP029667|CRT matches to position: 1984010-1984035, mismatch: 1, identity: 0.962

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
***.**********************

22. spacer 6.1|1984066|26|CP029667|CRISPRCasFinder matches to position: 2021074-2021099, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
******************** *****

23. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 981248-981276, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacagacaatgca	Protospacer
********************.********

24. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 2442636-2442664, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

25. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 2442691-2442719, mismatch: 1, identity: 0.966

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaagcaatgca	Protospacer
*********************.*******

26. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 334287-334302, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

27. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 981137-981152, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagctttcaataatg	Protospacer
******* ********

28. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1159718-1159733, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttactataatg	Protospacer
********* ******

29. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1419761-1419776, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

30. spacer 10.2|2880227|16|CP029667|PILER-CR matches to position: 1677927-1677942, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaaaaatg	Protospacer
*********** ****

31. spacer 1.1|423489|33|CP029667|CRT matches to position: 147703-147735, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

32. spacer 1.1|423489|33|CP029667|CRT matches to position: 1465814-1465846, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

33. spacer 1.1|423489|33|CP029667|CRT matches to position: 1673959-1673991, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

34. spacer 1.1|423489|33|CP029667|CRT matches to position: 1984023-1984055, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

35. spacer 1.2|423545|36|CP029667|CRT matches to position: 771635-771670, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaggaaattctacagacaatgca	Protospacer
***********.***.********************

36. spacer 1.2|423545|36|CP029667|CRT matches to position: 1159759-1159794, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacaggcaatgca	Protospacer
***********.****************.*******

37. spacer 1.3|423604|33|CP029667|CRT matches to position: 147703-147735, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

38. spacer 1.3|423604|33|CP029667|CRT matches to position: 1376531-1376563, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
******.*************** **********

39. spacer 1.3|423604|33|CP029667|CRT matches to position: 1465814-1465846, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

40. spacer 1.3|423604|33|CP029667|CRT matches to position: 1673959-1673991, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

41. spacer 1.3|423604|33|CP029667|CRT matches to position: 1984023-1984055, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

42. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to position: 1376531-1376563, mismatch: 2, identity: 0.939

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
****** *******************.******

43. spacer 4.2|1891825|26|CP029667|CRT matches to position: 2442828-2442853, mismatch: 2, identity: 0.923

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctttgttggggccccg	Protospacer
***.******** *************

44. spacer 4.4|1891939|26|CP029667|CRT matches to position: 2021074-2021099, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** **.*****************

45. spacer 4.5|1891965|33|CP029667|CRISPRCasFinder matches to position: 1940488-1940520, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

46. spacer 6.1|1984066|26|CP029667|CRISPRCasFinder matches to position: 2021018-2021043, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
*************.****** *****

47. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 232121-232149, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

48. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 771642-771670, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaggaaattctacagacaatgca	Protospacer
********.***********.********

49. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 1159766-1159794, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

50. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 1674012-1674040, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcaaaaagaaattctacagacaatgca	Protospacer
****.***************.********

51. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 1872297-1872325, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

52. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to position: 1940755-1940783, mismatch: 2, identity: 0.931

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
tttcgaaaagaaattctacaggcaatgca	Protospacer
********************..*******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029667_4	4.1\|1891742\|53\|CP029667\|CRT	1891742-1891794	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
CP029667_4	4.2\|1891825\|26\|CP029667\|CRT	1891825-1891850	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP029667_6	6.1\|1984066\|26\|CP029667\|CRISPRCasFinder	1984066-1984091	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP029667_6	6.1\|1984066\|26\|CP029667\|CRISPRCasFinder	1984066-1984091	26	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3359-3384	5	0.808
CP029667_6	6.1\|1984066\|26\|CP029667\|CRISPRCasFinder	1984066-1984091	26	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715511-715536	5	0.808
CP029667_4	4.3\|1891881\|28\|CP029667\|CRT	1891881-1891908	28	NZ_AP022622	Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_1	28222-28249	7	0.75
CP029667_4	4.3\|1891881\|28\|CP029667\|CRT	1891881-1891908	28	NC_021279	Mycobacteroides abscessus subsp. bolletii 50594 plasmid 2, complete sequence	9720-9747	7	0.75
CP029667_7	7.1\|1989465\|29\|CP029667\|CRISPRCasFinder	1989465-1989493	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
CP029667_3	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159745-159777	10	0.697

1. spacer 4.1|1891742|53|CP029667|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ttgggagtgggacagaaatgatattttcgcaaaatttatttcgtcgtcccacc	CRISPR spacer
aagggagtgggacagaaatgatagtttctcaaaatttatttcgtcgtcccacc	Protospacer
  ********************* **** ************************

2. spacer 4.2|1891825|26|CP029667|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 6.1|1984066|26|CP029667|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.*****************

4. spacer 6.1|1984066|26|CP029667|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
gtaggcccagacacagaagctggcgg	Protospacer
  .***** .****************

5. spacer 6.1|1984066|26|CP029667|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
tcagggccaaacacagaagctggcgg	Protospacer
. .** ** *****************

6. spacer 4.3|1891881|28|CP029667|CRT matches to NZ_AP022622 (Mycobacteroides abscessus strain JCM 30620 plasmid pJCM30620_1) position: , mismatch: 7, identity: 0.75

gctaatttgtctgtgtcggggctccacc	CRISPR spacer
ctgaatttgccggtgtcggggctccaaa	Protospacer
 . ******.* **************

7. spacer 4.3|1891881|28|CP029667|CRT matches to NC_021279 (Mycobacteroides abscessus subsp. bolletii 50594 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.75

gctaatttgtctgtgtcggggctccacc	CRISPR spacer
ctgaatttgccggtgtcggggctccaaa	Protospacer
 . ******.* **************

8. spacer 7.1|1989465|29|CP029667|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tttcgaaaagaaattctacaaacaatgca	CRISPR spacer
cacttagaagaaatcctacaaacaatgca	Protospacer
. .. *.*******.**************

9. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
aggtgcttgacgaaaactcaccttacgataaaa	Protospacer
 .* . .********* *** ********** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

669332 : 727572

Staphylococcus_phage(97.1%)

protease,integrase,terminase,portal,capsid,holin,head,tail

attL 683199:683216|attR 708131:708148

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR08318.1\|669332_670076_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWR06772.1\|670250_670535_+	10 kDa chaperonin	A0A221S386	uncultured_virus	4.7e-14	46.2
AWR07570.1\|670610_672227_+	chaperonin GroL	A0A240F779	uncultured_virus	3.4e-157	54.7
AWR07834.1\|673137_673728_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.1e-97	95.8
AWR06738.1\|674081_674423_+	putative membrane protein	NA	NA	NA	NA
AWR08961.1\|674587_675031_+	acetyltransferase family protein	NA	NA	NA	NA
AWR06689.1\|675883_677191_-	ktr system potassium uptake protein B	NA	NA	NA	NA
AWR07933.1\|677351_678263_+	periplasmic binding family protein	NA	NA	NA	NA
AWR06602.1\|678324_679170_+	leucine carboxyl methyltransferase family protein	NA	NA	NA	NA
AWR07157.1\|679541_680765_-	putative succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AWR06639.1\|681199_682255_+	hypothetical protein	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
AWR08656.1\|682276_683293_+	hypothetical protein	A0A2I6PER8	Staphylococcus_phage	1.1e-25	29.0
683199:683216	attL	NA	NA	NA	NA
AWR07875.1\|683530_684355_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	6.8e-162	100.0
AWR08371.1\|684411_685449_-\|integrase	integrase	A0A1X9H022	Staphylococcus_phage	3.8e-178	99.7
AWR06763.1\|685639_686353_-	pemK-like family protein	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
AWR07092.1\|686430_686613_-	hypothetical protein	A0A0H3U4Z4	Staphylococcus_phage	4.1e-27	100.0
AWR08537.1\|687163_688096_-	exonuclease family protein	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
AWR06901.1\|688111_688825_-	helix-turn-helix family protein	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
AWR07858.1\|688958_689222_+	helix-turn-helix family protein	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
AWR08469.1\|689441_689771_-	hypothetical protein	A0A0H3U4Z1	Staphylococcus_phage	4.6e-53	100.0
AWR07727.1\|689821_690574_+	phage antirepressor KilAC domain protein	A0A0H3U319	Staphylococcus_phage	5.6e-139	100.0
AWR07614.1\|690589_690766_+	hypothetical protein	A0A2I6PEL1	Staphylococcus_phage	8.8e-27	100.0
AWR06845.1\|690762_690981_-	putative phiSLT ORF78-like protein	A0A0H3U2T9	Staphylococcus_phage	7.0e-34	98.6
AWR07538.1\|691051_691372_+	hypothetical protein	A0A0H3U4C3	Staphylococcus_phage	1.5e-56	100.0
AWR07074.1\|691368_691530_+	hypothetical protein	A0A0H3U4Y7	Staphylococcus_phage	3.8e-21	100.0
AWR08792.1\|691624_691885_+	hypothetical protein	A0A0H3U2W4	Staphylococcus_phage	9.3e-41	100.0
AWR06809.1\|691924_692185_+	hypothetical protein	A0A0H3U2T6	Staphylococcus_phage	6.8e-44	100.0
AWR08719.1\|692465_694409_+	AAA domain protein	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	94.7
AWR07433.1\|694410_695331_+	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AWR07001.1\|695543_696029_+	beta-lactamase superfamily domain protein	A0A0H3U2T4	Staphylococcus_phage	4.2e-87	100.0
AWR08638.1\|696029_696500_+	single-stranded DNA-binding family protein	A0A0H3U4B5	Staphylococcus_phage	4.4e-81	100.0
AWR07151.1\|696529_697423_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AWR07774.1\|697429_697648_+	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
AWR09189.1\|697656_698061_+	endodeoxyribonuclease RusA family protein	A0A0H3U2W2	Staphylococcus_phage	1.4e-72	100.0
AWR08298.1\|698073_698442_+	PVL ORF-50-like family protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
AWR07960.1\|698445_698688_+	phage family protein	A0A0H3U4B0	Staphylococcus_phage	1.1e-40	100.0
AWR08565.1\|698702_699068_+	acetyltransferase family protein	A0A0H3U4X7	Staphylococcus_phage	1.1e-52	96.4
AWR06629.1\|699060_699297_+	hypothetical protein	A0A0H3U313	Staphylococcus_phage	5.3e-35	100.0
AWR07469.1\|699286_699529_+	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	3.7e-36	100.0
AWR08547.1\|699521_700055_+	dUTP diphosphatase family protein	A0A0H3U2T1	Staphylococcus_phage	1.6e-95	100.0
AWR07164.1\|700208_700337_+	hypothetical protein	A0A2H4PQJ7	Staphylococcus_phage	1.2e-14	100.0
AWR08900.1\|700333_700540_+	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
AWR07293.1\|700536_700923_+	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
AWR07123.1\|700919_701069_+	transcriptional activator RinB family protein	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AWR07493.1\|701080_701269_+	hypothetical protein	A0A2I6PDV9	Staphylococcus_phage	4.6e-26	100.0
AWR09158.1\|701296_701713_+	phage transcriptional regulator, RinA family protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AWR08001.1\|701944_702244_+	HNH endonuclease family protein	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AWR07772.1\|702373_702718_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWR07813.1\|702714_704376_+	phage Terminase family protein	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	99.8
AWR08834.1\|704391_705579_+\|portal	phage portal protein, HK97 family	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AWR09065.1\|705562_706300_+\|protease	clp protease family protein	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AWR07213.1\|706323_707469_+\|capsid	phage major capsid protein, HK97 family	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AWR06936.1\|707488_707773_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AWR08387.1\|707762_708047_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWR07861.1\|708030_708393_+\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
708131:708148	attR	NA	NA	NA	NA
AWR07413.1\|708389_708794_+	hypothetical protein	A0A0H3U2V1	Staphylococcus_phage	8.7e-70	100.0
AWR08791.1\|709198_709843_+\|tail	phage major tail, phi13 family protein	A0A0H3U4E6	Staphylococcus_phage	6.5e-120	100.0
AWR08345.1\|709968_710109_+	bacterial Ig-like domain family protein	A0A2I6PDK6	Staphylococcus_phage	7.2e-16	97.8
AWR07753.1\|710158_710509_+	hypothetical protein	A0A0H3U503	Staphylococcus_phage	1.3e-58	100.0
AWR06789.1\|710559_710697_+	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AWR07295.1\|710753_715283_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A1X9H084	Staphylococcus_phage	0.0e+00	95.0
AWR09081.1\|715279_716764_+\|tail	phage tail family protein	A0A0H3U501	Staphylococcus_phage	2.0e-297	100.0
AWR07823.1\|716779_720565_+	phage minor structural, N-terminal region domain protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.4
AWR08857.1\|720554_720707_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AWR06600.1\|720753_721041_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AWR08568.1\|721098_721395_+	hypothetical protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AWR08462.1\|721586_721721_+	putative membrane protein	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
AWR06659.1\|721932_722187_+\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AWR07524.1\|722198_722954_+	CHAP domain protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AWR08596.1\|723144_723636_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AWR06719.1\|724324_724621_+	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWR07663.1\|724715_725165_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AWR08742.1\|725849_726200_+	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWR08191.1\|726252_726444_-	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWR07349.1\|726823_727003_-	putative membrane protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AWR07867.1\|727374_727572_-	phospholipase C domain protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0

DBSCAN-SWA_2

789071 : 866827

Staphylococcus_phage(74.63%)

protease,integrase,terminase,portal,transposase,capsid,holin,head,tail,tRNA

attL 784227:784244|attR 811264:811281

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
784227:784244	attL	NA	NA	NA	NA
AWR08367.1\|789071_790319_+\|protease	thermophilic metalloprotease family protein	NA	NA	NA	NA
AWR09028.1\|790408_790939_+	thioesterase superfamily protein	NA	NA	NA	NA
AWR07613.1\|791198_792344_-	yfkB-like domain protein	NA	NA	NA	NA
AWR07610.1\|792388_793435_-\|integrase	phage integrase family protein	Q38045	Staphylococcus_phage	6.1e-200	99.4
AWR07829.1\|793547_793727_+	putative excisionase	Q4ZBP0	Staphylococcus_phage	3.7e-25	100.0
AWR08666.1\|793706_794639_-	hypothetical protein	A0EX19	Staphylococcus_virus	6.7e-174	100.0
AWR07961.1\|794778_794946_-	hypothetical protein	Q4ZDJ4	Staphylococcus_virus	3.0e-24	98.2
AWR08840.1\|795015_795735_-	helix-turn-helix family protein	A0A2H4PQQ2	Staphylococcus_phage	1.3e-132	100.0
AWR06603.1\|795876_796095_+	helix-turn-helix family protein	Q8SDX1	Staphylococcus_phage	2.9e-35	100.0
AWR09088.1\|796110_796899_+	phage antirepressor KilAC domain protein	R9QSV3	Staphylococcus_phage	1.0e-143	99.2
AWR09177.1\|796915_797110_+	hypothetical protein	A0A1X9H0A2	Staphylococcus_phage	3.3e-19	98.4
AWR08669.1\|797311_797557_-	hypothetical protein	E9LT77	Staphylococcus_phage	1.0e-36	97.5
AWR08239.1\|797627_797849_+	hypothetical protein	A0A1X9H0Q4	Staphylococcus_phage	1.5e-31	100.0
AWR08431.1\|798096_798357_+	hypothetical protein	Q4ZBM7	Staphylococcus_phage	2.9e-42	97.7
AWR07043.1\|798366_798588_+	hypothetical protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AWR07744.1\|798580_799360_+	bacterial dnaA family protein	Q9G028	Staphylococcus_virus	7.4e-142	99.6
AWR08522.1\|799389_799944_+	putative single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	1.0e-100	100.0
AWR09176.1\|799956_800622_+	hypothetical protein	Q4ZDY3	Staphylococcus_virus	5.3e-125	99.5
AWR07731.1\|800621_801401_+	AP2 domain protein	A0A2H4J5K3	uncultured_Caudovirales_phage	7.3e-49	46.1
AWR06692.1\|801372_802176_+	putative phage replisome organizer domain protein	A0A2H4JCF5	uncultured_Caudovirales_phage	2.5e-121	99.6
AWR08169.1\|802185_802959_+	AFG1-like ATPase family protein	A0A2H4PQI3	Staphylococcus_phage	3.3e-142	98.4
AWR08987.1\|802952_803111_+	hypothetical protein	Q4ZBL5	Staphylococcus_phage	9.9e-22	96.2
AWR07855.1\|803123_803345_+	hypothetical protein	A7TWN4	Staphylococcus_phage	1.3e-35	100.0
AWR09124.1\|803354_803759_+	hypothetical protein	A7TWN5	Staphylococcus_phage	3.0e-70	97.8
AWR07341.1\|803763_803949_+	hypothetical protein	Q4ZA46	Staphylococcus_virus	4.1e-27	100.0
AWR07159.1\|803949_804312_+	PVL ORF-50-like family protein	B7T0B4	Staphylococcus_virus	3.5e-46	75.8
AWR07033.1\|804311_804566_+	hypothetical protein	A0A2I6PDN8	Staphylococcus_phage	6.3e-42	97.6
AWR07555.1\|804571_804814_+	phage family protein	R9QT89	Staphylococcus_phage	3.3e-40	97.5
AWR08765.1\|804828_804993_+	putative oRF29	A0A2I6PF20	Staphylococcus_phage	7.6e-25	100.0
AWR08636.1\|804985_805222_+	hypothetical protein	A0A2I6PF11	Staphylococcus_phage	4.0e-35	100.0
AWR07279.1\|805211_805454_+	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	3.7e-36	100.0
AWR07693.1\|805446_805956_+	dUTP diphosphatase family protein	Q8SDV3	Staphylococcus_phage	2.8e-89	98.8
AWR06706.1\|806109_806238_+	hypothetical protein	A9CR89	Staphylococcus_phage	3.7e-11	100.0
AWR06987.1\|806234_806471_+	hypothetical protein	C8CH06	Staphylococcus_phage	1.1e-35	100.0
AWR08922.1\|806495_806732_+	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
AWR07872.1\|806724_807108_+	hypothetical protein	A0A2I6PDC1	Staphylococcus_phage	6.7e-64	100.0
AWR06869.1\|807107_807281_+	transcriptional activator RinB family protein	S4SVE4	Staphylococcus_phage	6.4e-22	100.0
AWR06998.1\|807281_807428_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	2.2e-15	100.0
AWR07265.1\|807451_807874_+	phage transcriptional regulator, RinA family protein	Q8SDV1	Staphylococcus_phage	1.6e-74	100.0
AWR07155.1\|807991_808501_+\|terminase	terminase small subunit	E0Y3R8	Staphylococcus_virus	1.7e-75	99.3
AWR07740.1\|808487_809765_+\|terminase	phage terminase, large subunit, PBSX family	Q8SDU9	Staphylococcus_phage	3.0e-249	100.0
AWR07635.1\|809775_811311_+\|portal	phage portal protein, SPP1 family	Q4ZDV9	Staphylococcus_virus	1.5e-292	99.8
811264:811281	attR	NA	NA	NA	NA
AWR09050.1\|811317_812313_+\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZDV8	Staphylococcus_virus	5.8e-184	100.0
AWR06546.1\|812385_812556_+	hypothetical protein	Q4ZDV7	Staphylococcus_virus	3.3e-23	100.0
AWR07821.1\|812664_813285_+	hypothetical protein	Q8SDU6	Staphylococcus_phage	6.4e-64	100.0
AWR08210.1\|813298_814273_+\|capsid	phage major capsid protein, HK97 family	Q8SDU5	Staphylococcus_phage	1.3e-183	100.0
AWR09156.1\|814294_814582_+	hypothetical protein	Q8SDU4	Staphylococcus_phage	6.2e-46	100.0
AWR07934.1\|814590_814923_+\|head,tail	phage gp6-like head-tail connector family protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AWR08789.1\|815221_815569_+	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
AWR07296.1\|815580_815964_+	putative phi 11	A0A0F6N3L1	Staphylococcus_phage	1.5e-68	100.0
AWR08606.1\|815991_816564_+\|tail	phage major tail protein, TP901-1 family	A0A0F6N3L8	Staphylococcus_phage	2.0e-104	100.0
AWR08674.1\|816625_816991_+	phage family protein	Q8SDT9	Staphylococcus_phage	2.8e-59	100.0
AWR07798.1\|817020_817365_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AWR08588.1\|817381_820849_+	putative membrane protein	Q4ZDU6	Staphylococcus_virus	1.1e-282	99.6
AWR08454.1\|820861_821809_+\|tail	phage tail family protein	B2ZYZ5	Staphylococcus_phage	3.6e-183	100.0
AWR09220.1\|821817_823719_+\|tail	prophage endopeptidase tail family protein	Q8SDT5	Staphylococcus_phage	0.0e+00	99.7
AWR08799.1\|823733_825644_+	putative minor structural protein	Q4ZDD6	Staphylococcus_virus	0.0e+00	99.2
AWR07904.1\|825643_827467_+	hypothetical protein	A0A0H3U4S6	Staphylococcus_phage	0.0e+00	99.3
AWR08671.1\|827466_827844_+	hypothetical protein	Q4ZDT8	Staphylococcus_virus	8.1e-54	99.2
AWR06801.1\|827847_828021_+	hypothetical protein	A0A059T7K6	Staphylococcus_phage	1.3e-27	100.0
AWR06614.1\|828061_828361_+	hypothetical protein	A0A0F6N3M6	Staphylococcus_phage	1.3e-46	99.0
AWR08482.1\|828497_830396_+	CHAP domain protein	S4V9N2	Staphylococcus_phage	0.0e+00	98.9
AWR09064.1\|830408_831581_+	hypothetical protein	S4V7L6	Staphylococcus_phage	3.8e-198	100.0
AWR07131.1\|831586_831982_+	hypothetical protein	S4V997	Staphylococcus_phage	1.6e-68	100.0
AWR06572.1\|832037_832475_+\|holin	holin, phage phi LC3 family	S4V690	Staphylococcus_phage	1.2e-72	100.0
AWR08140.1\|832455_833901_+	CHAP domain protein	S4V6E6	Staphylococcus_phage	1.8e-295	100.0
AWR06752.1\|834167_834296_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
AWR09046.1\|834478_834664_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AWR07866.1\|835417_835579_+	hypothetical protein	NA	NA	NA	NA
AWR07859.1\|835709_836225_+\|protease	intracellular protease, PfpI family protein	NA	NA	NA	NA
AWR08365.1\|836565_837375_+	monofunctional glycosyltransferase	NA	NA	NA	NA
AWR07767.1\|837635_838454_+	regulatory protein RecX	NA	NA	NA	NA
AWR08587.1\|838431_838746_+	hypothetical protein	NA	NA	NA	NA
AWR08820.1\|838760_840278_+	putative sugar ABC transporter ATPase	NA	NA	NA	NA
AWR08228.1\|840286_841123_+	putative membrane protein	NA	NA	NA	NA
AWR07079.1\|841383_842361_-	hypothetical protein	NA	NA	NA	NA
AWR07177.1\|842512_843550_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
AWR07762.1\|843851_844394_+	hypothetical protein	NA	NA	NA	NA
AWR07045.1\|844684_846421_+	putative multidrug export ATP-binding/permease protein	W8CYL7	Bacillus_phage	1.7e-53	30.4
AWR06964.1\|846611_847706_-	hypothetical protein	NA	NA	NA	NA
AWR06634.1\|847998_849288_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
AWR08766.1\|849368_849824_+	ahpC/TSA family protein	NA	NA	NA	NA
AWR08874.1\|849829_850780_+	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein	NA	NA	NA	NA
AWR07261.1\|850876_851323_+	peroxide-responsive repressor PerR	NA	NA	NA	NA
AWR07463.1\|859728_861090_-\|transposase	transposase family protein	NA	NA	NA	NA
AWR07176.1\|861582_862644_+	phosphotransferase system, EIIC family protein	NA	NA	NA	NA
AWR07566.1\|862901_864359_+	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA
AWR08424.1\|864351_865074_+	recF/RecN/SMC N terminal domain protein	G9BWD6	Planktothrix_phage	1.3e-36	42.7
AWR08586.1\|865224_866352_+	epoxyqueuosine reductase	NA	NA	NA	NA
AWR08338.1\|866356_866827_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

895378 : 976219

Staphylococcus_phage(89.23%)

protease,transposase,bacteriocin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR09077.1\|895378_896020_-	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	1.2e-110	94.3
AWR07007.1\|896032_896488_-	hypothetical protein	Q4ZCB9	Staphylococcus_virus	1.7e-61	76.8
AWR07231.1\|897370_898306_+	leucotoxin LukEv	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AWR08553.1\|898307_899291_+	leucotoxin LukDv	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
AWR08696.1\|900412_900556_+	lantibiotic gallidermin	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
AWR06854.1\|900620_903614_+\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.3
AWR08901.1\|903606_904851_+	lanthionine synthetase C-like family protein	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
AWR07707.1\|904866_905385_+	epidermin decarboxylase	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
AWR08241.1\|905394_906768_+	subtilase family protein	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
AWR06658.1\|906790_907483_+	lantibiotic protection ABC transporter, ATP-binding subunit	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
AWR08998.1\|907479_908241_+	lantibiotic protection ABC transporter permease subunit, MutE/EpiE family protein	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
AWR08294.1\|908237_908936_+	putative membrane protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
AWR07956.1\|909409_909976_-	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
AWR07633.1\|910939_911647_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.6e-130	100.0
AWR08075.1\|911771_912494_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
AWR07526.1\|912551_913271_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
AWR07575.1\|913391_914111_+\|protease	serine protease SplF	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AWR08484.1\|914268_914985_+\|protease	serine protease SplF	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
AWR08634.1\|915135_915855_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
AWR06637.1\|916217_917774_+	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	2.3e-288	99.4
AWR07826.1\|917766_918966_+	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	5.5e-229	99.7
AWR07032.1\|919815_923928_+	NACHT domain protein	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	100.0
AWR08203.1\|924517_924826_+	hypothetical protein	NA	NA	NA	NA
AWR07909.1\|925695_925839_+\|transposase	transposase family protein	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
AWR07984.1\|926442_926826_+	hypothetical protein	NA	NA	NA	NA
AWR07214.1\|926836_927013_+	putative membrane protein	NA	NA	NA	NA
AWR07535.1\|927014_927200_+	hypothetical protein	NA	NA	NA	NA
AWR08566.1\|927385_927955_+	hypothetical protein	A0A2H4PQN8	Staphylococcus_phage	2.3e-76	93.2
AWR08201.1\|928172_928724_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
AWR06780.1\|928821_929010_-	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	3.7e-23	86.9
AWR06607.1\|929206_929677_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	7.0e-63	80.1
AWR09044.1\|929677_929833_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	4.7e-08	96.9
AWR07932.1\|929908_930904_-	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
AWR07922.1\|930984_931599_-	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	9.5e-36	87.3
AWR06601.1\|931910_932393_+	putative lipoprotein	A0A2H4PQN7	Staphylococcus_phage	2.5e-79	98.6
AWR08131.1\|932947_934030_+	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.8e-205	97.5
AWR06838.1\|934034_935036_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
AWR06740.1\|935032_935290_-	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AWR07977.1\|935355_935829_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
AWR06672.1\|935809_936580_+	prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	7.3e-142	98.4
AWR08963.1\|937077_937440_+\|transposase	transposase IS200 like family protein	A0A1P8BMC0	Lactococcus_phage	1.8e-10	37.8
AWR08062.1\|937575_939168_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AWR06579.1\|939538_940732_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AWR06646.1\|940856_941765_+	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
AWR08921.1\|941976_942810_+	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	9.6e-156	98.6
AWR07223.1\|942872_943481_-\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.3e-109	96.0
AWR07751.1\|943513_944338_-	hypothetical protein	A0ZS58	Staphylococcus_virus	1.7e-125	98.2
AWR07320.1\|944409_944763_-	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
AWR06559.1\|944759_945125_-	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	1.4e-58	99.2
AWR07119.1\|945380_945683_-	putative membrane protein	NA	NA	NA	NA
AWR06952.1\|945942_946656_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AWR09093.1\|947095_947731_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWR09135.1\|948026_948470_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
AWR08740.1\|948456_948600_-	hypothetical protein	NA	NA	NA	NA
AWR08209.1\|949012_949483_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AWR07278.1\|949681_949906_+	hypothetical protein	NA	NA	NA	NA
AWR08884.1\|950181_951036_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWR08364.1\|951330_951672_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	2.8e-61	100.0
AWR08283.1\|951743_953033_-	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	1.1e-227	99.5
AWR06807.1\|953872_955375_+	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AWR08619.1\|955855_956899_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	6.3e-197	99.4
AWR07708.1\|956905_957538_+	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AWR07085.1\|957548_958730_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
AWR07448.1\|958742_959207_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AWR07584.1\|959328_960330_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
AWR07955.1\|960563_961391_+	alpha/beta hydrolase family protein	NA	NA	NA	NA
AWR06917.1\|961737_962229_+	hypothetical protein	A0A146ICT8	Staphylococcus_phage	2.4e-74	91.6
AWR07210.1\|962225_962450_+	hypothetical protein	Q9MBP7	Staphylococcus_prophage	4.5e-20	81.8
AWR07983.1\|962969_963371_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWR07112.1\|963490_964054_-	rRNA methylase family protein	A0A2H4PQV0	Staphylococcus_phage	3.2e-102	98.9
AWR07300.1\|964050_965004_-	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWR08738.1\|965152_966295_+	sugar (and other) transporter family protein	A0A2H4PQR6	Staphylococcus_phage	2.1e-209	100.0
AWR08731.1\|966585_969000_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
AWR07197.1\|969021_969333_+	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
AWR07556.1\|969658_976219_+	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	2.0e-304	98.1

DBSCAN-SWA_4

1101678 : 1110721

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR08268.1\|1101678_1102683_+	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AWR07765.1\|1102684_1103710_+\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AWR08266.1\|1103732_1104872_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWR08175.1\|1104890_1105151_+	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWR07147.1\|1105425_1107705_+	protein-export membrane protein SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AWR07662.1\|1107907_1110181_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
AWR08868.1\|1110202_1110721_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_5

1179858 : 1188170

Caulobacter_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR07400.1\|1179858_1181658_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0
AWR06707.1\|1181881_1182988_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AWR08213.1\|1183118_1183796_+	hypothetical protein	NA	NA	NA	NA
AWR06645.1\|1183798_1184899_+	NIF3 family protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AWR07937.1\|1185012_1186359_+	DEAD/DEAH box helicase family protein	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
AWR07714.1\|1186368_1187259_+	putative endonuclease 4	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AWR08151.1\|1187402_1188170_+	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	7.8e-19	28.3

DBSCAN-SWA_6

1244004 : 1286899

Staphylococcus_phage(94.92%)

integrase,terminase,portal,capsid,holin,tail

attL 1248964:1248984|attR 1286565:1286585

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR09057.1\|1244004_1245753_+	sensor protein SrrB	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
AWR09068.1\|1245997_1246927_+	hypothetical protein	NA	NA	NA	NA
AWR08404.1\|1246919_1247765_+	hypothetical protein	NA	NA	NA	NA
AWR06674.1\|1247791_1248946_+	hypothetical protein	B5WZK7	Staphylococcus_phage	1.5e-114	97.2
1248964:1248984	attL	NA	NA	NA	NA
AWR06925.1\|1248988_1250194_-\|integrase	phage integrase family protein	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
AWR08549.1\|1250319_1250934_+	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
AWR08295.1\|1250930_1251056_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	3.3e-12	100.0
AWR06973.1\|1251166_1251562_-	hypothetical protein	A0A2I6PEJ7	Staphylococcus_phage	3.8e-70	100.0
AWR08446.1\|1251590_1252025_-	putative translation initiation factor IF-2	A0A2I6PEM0	Staphylococcus_phage	3.6e-21	96.5
AWR06836.1\|1252042_1252504_-	hypothetical protein	A0A2I6PEK4	Staphylococcus_phage	2.9e-85	98.7
AWR08992.1\|1252516_1252846_-	helix-turn-helix family protein	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
AWR06768.1\|1253006_1253198_+	helix-turn-helix family protein	A0A2I6PEL6	Staphylococcus_phage	2.3e-28	100.0
AWR09184.1\|1253281_1253458_+	hypothetical protein	A0A2I6PEL1	Staphylococcus_phage	8.8e-27	100.0
AWR08686.1\|1253454_1253673_-	hypothetical protein	A0A2I6PE22	Staphylococcus_phage	9.2e-34	98.6
AWR07282.1\|1253740_1253956_+	hypothetical protein	A0A2I6PEK7	Staphylococcus_phage	1.0e-32	100.0
AWR06986.1\|1253980_1254244_+	homeo-like domain protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
AWR07847.1\|1254509_1254827_+	hypothetical protein	A0A2I6PEL3	Staphylococcus_phage	1.1e-35	100.0
AWR07426.1\|1254819_1255122_+	hypothetical protein	A0A1X9IGX2	Staphylococcus_phage	2.4e-48	100.0
AWR08583.1\|1255126_1255387_+	hypothetical protein	A0A2I6PEM2	Staphylococcus_phage	3.4e-43	100.0
AWR07432.1\|1255400_1255763_+	hypothetical protein	A0A2I6PEM7	Staphylococcus_phage	3.7e-56	100.0
AWR07008.1\|1255759_1256926_+	hypothetical protein	A0A2I6PEL9	Staphylococcus_phage	1.4e-221	100.0
AWR08035.1\|1256951_1257509_+	hypothetical protein	A0A2I6PEP8	Staphylococcus_phage	1.8e-97	100.0
AWR08115.1\|1257567_1259529_+	DNA polymerase A family protein	A0A2I6PEL4	Staphylococcus_phage	0.0e+00	100.0
AWR07154.1\|1259541_1259727_+	hypothetical protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AWR06932.1\|1259726_1260128_+	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	1.2e-68	100.0
AWR07985.1\|1260127_1260385_+	hypothetical protein	A0A2I6PEN5	Staphylococcus_phage	2.6e-43	100.0
AWR07580.1\|1260387_1260588_+	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
AWR09000.1\|1260602_1260845_+	phage family protein	A0A2I6PEV3	Staphylococcus_phage	1.5e-40	100.0
AWR09089.1\|1260859_1261108_+	hypothetical protein	A0A2I6PEP2	Staphylococcus_phage	1.4e-38	100.0
AWR08483.1\|1261100_1261637_+	dUTPase family protein	A0A2I6PEN6	Staphylococcus_phage	1.6e-95	100.0
AWR09214.1\|1261673_1261880_+	hypothetical protein	A0A2I6PEM9	Staphylococcus_phage	1.6e-19	100.0
AWR08524.1\|1261876_1262080_+	hypothetical protein	A0A2I6PEQ8	Staphylococcus_phage	3.4e-30	100.0
AWR06696.1\|1262072_1262309_+	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	2.8e-36	100.0
AWR08425.1\|1262301_1262688_+	hypothetical protein	A0A1X9IGZ2	Staphylococcus_phage	3.0e-64	100.0
AWR08152.1\|1262684_1262837_+	transcriptional activator RinB family protein	A0A2I6PEM5	Staphylococcus_phage	2.0e-19	100.0
AWR08036.1\|1262904_1263105_+	hypothetical protein	A0A2I6PEP5	Staphylococcus_phage	4.9e-26	100.0
AWR06799.1\|1263392_1265840_+	virulence-associated E family protein	A0A2I6PEP4	Staphylococcus_phage	0.0e+00	100.0
AWR08964.1\|1265863_1265986_-	hypothetical protein	Q4ZCF9	Staphylococcus_virus	6.9e-15	95.0
AWR07796.1\|1266180_1266471_+	VRR-NUC domain protein	A0A2I6PE31	Staphylococcus_phage	6.5e-51	100.0
AWR07587.1\|1266460_1267819_+	type III restriction enzyme, res subunit	A0A1X9IH01	Staphylococcus_phage	2.8e-261	99.8
AWR07777.1\|1267831_1268269_+	phage transcriptional regulator, RinA family protein	A0A2I6PEN3	Staphylococcus_phage	7.9e-77	100.0
AWR08083.1\|1268425_1268740_+	HNH endonuclease family protein	A0A2I6PEN4	Staphylococcus_phage	5.0e-57	100.0
AWR08535.1\|1268866_1269172_+\|terminase	phage terminase, small subunit	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
AWR08219.1\|1269161_1270853_+	phage Terminase family protein	A0A1X9IGU0	Staphylococcus_phage	0.0e+00	100.0
AWR06619.1\|1270857_1272096_+\|portal	phage portal protein, HK97 family	A0A2I6PER5	Staphylococcus_phage	6.9e-235	100.0
AWR07297.1\|1272079_1272853_+	peptidase S49 family protein	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
AWR08574.1\|1272936_1274196_+\|capsid	phage major capsid protein, HK97 family	A0A2I6PEQ3	Staphylococcus_phage	4.0e-182	98.2
AWR08912.1\|1274204_1275266_+	peptidase M23 family protein	A0A1X9IGU9	Staphylococcus_phage	5.1e-202	100.0
AWR06742.1\|1275265_1276090_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AWR06924.1\|1276098_1277682_+\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AWR07441.1\|1277681_1277972_+	putative phage protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AWR09021.1\|1277987_1279898_+	putative minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
AWR08798.1\|1279897_1281364_+	hypothetical protein	A0A2I6PES7	Staphylococcus_phage	1.5e-273	100.0
AWR08875.1\|1281363_1281753_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AWR07208.1\|1281745_1281910_+	hypothetical protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AWR06865.1\|1281955_1282255_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWR09141.1\|1282390_1282693_+\|holin	holin, SPP1 family	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AWR07444.1\|1282703_1284158_+	N-acetylmuramoyl-L-alanine amidase family protein	A0A2I6PET7	Staphylococcus_phage	5.7e-289	100.0
AWR08206.1\|1284547_1285486_+	gamma-hemolysin component C	A0A2I6PER8	Staphylococcus_phage	3.7e-180	100.0
AWR08977.1\|1285487_1286465_+	lukF-PV	A0A2I6PEU3	Staphylococcus_phage	7.5e-184	100.0
AWR09010.1\|1286713_1286899_+	hypothetical protein	A0ZS61	Staphylococcus_virus	1.7e-25	100.0
1286565:1286585	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1316455 : 1408734

Staphylococcus_phage(20.0%)

protease,lysis,transposase,head,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR07215.1\|1316455_1317658_+\|head	poly A polymerase head domain protein	H7BUW3	unidentified_phage	3.2e-35	42.5
AWR08983.1\|1317644_1318616_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
AWR07870.1\|1318639_1321333_+	hypothetical protein	A0A1X9I5C8	Streptococcus_phage	8.2e-47	34.4
AWR09019.1\|1321654_1322947_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.9e-54	30.0
AWR07135.1\|1323274_1323961_+	dnaD domain protein	Q938N2	Temperate_phage	5.5e-08	32.6
AWR07245.1\|1323950_1324610_+	endonuclease III	NA	NA	NA	NA
AWR08402.1\|1324614_1324956_+	hypothetical protein	NA	NA	NA	NA
AWR08261.1\|1325521_1327705_-	penicillin binding transpeptidase domain protein	NA	NA	NA	NA
AWR06922.1\|1327701_1328328_-	recombination protein U	A0A1C8E9C3	Bacillus_phage	1.7e-24	35.5
AWR06678.1\|1328867_1329218_+	hypothetical protein	NA	NA	NA	NA
AWR07991.1\|1329210_1329774_+	hypothetical protein	NA	NA	NA	NA
AWR07319.1\|1329787_1330132_+	cell cycle protein GpsB	NA	NA	NA	NA
AWR07284.1\|1330232_1330349_+	hypothetical protein	NA	NA	NA	NA
AWR08196.1\|1330782_1331928_+	hypothetical protein	NA	NA	NA	NA
AWR08928.1\|1332011_1332344_+	putative exported protein	NA	NA	NA	NA
AWR07494.1\|1332549_1333890_-	pepSY-associated TM helix family protein	NA	NA	NA	NA
AWR08838.1\|1334193_1337634_+	small GTP-binding domain protein	NA	NA	NA	NA
AWR08445.1\|1337653_1338532_+	5'-3' exonuclease	S5M4P0	Bacillus_phage	6.2e-20	29.5
AWR09229.1\|1339006_1340125_+	alanine dehydrogenase	NA	NA	NA	NA
AWR06650.1\|1340219_1341260_+	threonine ammonia-lyase	NA	NA	NA	NA
AWR07579.1\|1341290_1342613_+	amino acid permease family protein	NA	NA	NA	NA
AWR06767.1\|1342769_1344161_+	quinolone resistance protein NorB	NA	NA	NA	NA
AWR08434.1\|1344558_1375713_+	hyperosmolarity resistance protein Ebh	NA	NA	NA	NA
AWR09244.1\|1375771_1376173_-	reverse transcriptase-like family protein	NA	NA	NA	NA
AWR09180.1\|1376517_1376649_+	hypothetical protein	NA	NA	NA	NA
AWR08463.1\|1376713_1377418_-	conserved hypothetical integral membrane family protein	A0A2H4J2N7	uncultured_Caudovirales_phage	8.4e-12	23.8
AWR07942.1\|1377635_1377857_+	hypothetical protein	NA	NA	NA	NA
AWR08447.1\|1377868_1378120_+	scaffold Nfu/NifU N terminal family protein	NA	NA	NA	NA
AWR08772.1\|1378157_1379282_+	conserved virulence factor C	NA	NA	NA	NA
AWR09211.1\|1379297_1379735_+	bacillithiol system oxidoreductase, YphP/YqiW family protein	NA	NA	NA	NA
AWR08154.1\|1380158_1381115_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.6e-167	85.2
AWR08929.1\|1381314_1381794_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	2.0e-73	79.9
AWR07513.1\|1381808_1382648_+	EDD, DegV family domain protein	A0A0N9SI50	Staphylococcus_phage	2.3e-48	77.3
AWR07508.1\|1382733_1383267_+	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
AWR08958.1\|1383259_1383688_+	methionine-R-sulfoxide reductase	NA	NA	NA	NA
AWR07031.1\|1383699_1384200_+	glucose-specific phosphotransferase enzyme IIA component	NA	NA	NA	NA
AWR08616.1\|1384199_1384421_+	hypothetical protein	NA	NA	NA	NA
AWR08419.1\|1384612_1386103_+\|protease	putative CtpA-like serine protease	A0A0R6PIZ1	Moraxella_phage	2.3e-22	30.5
AWR08972.1\|1386502_1387012_+	acetyltransferase domain protein	NA	NA	NA	NA
AWR08855.1\|1387023_1388094_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
AWR08534.1\|1388110_1388725_+	PAP2 superfamily protein	NA	NA	NA	NA
AWR07742.1\|1388855_1389341_-\|transposase	transposase IS200 like family protein	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
AWR08316.1\|1389861_1389993_+	hypothetical protein	NA	NA	NA	NA
AWR08220.1\|1390254_1390914_+	response regulator	W8CYM9	Bacillus_phage	1.1e-34	33.8
AWR07414.1\|1390910_1392266_+	signal transduction histidine-protein kinase ArlS	A0A1V0SGX0	Hokovirus	3.5e-14	27.8
AWR09144.1\|1392549_1395348_+	oxoglutarate dehydrogenase (succinyl-transferring), E1 component	NA	NA	NA	NA
AWR06894.1\|1395361_1396630_+	dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
AWR07128.1\|1397209_1398019_+	putative lactoylglutathione lyase	NA	NA	NA	NA
AWR07527.1\|1398047_1398251_+	putative hypothetical protein YozC	NA	NA	NA	NA
AWR07807.1\|1398431_1399223_+	sigma-54 interaction domain protein	R4TG24	Halovirus	2.1e-11	28.2
AWR07023.1\|1399236_1401123_+	cobalamin biosynthesis CobT VWA domain protein	NA	NA	NA	NA
AWR08794.1\|1401347_1402691_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
AWR08592.1\|1403043_1403436_+\|transposase	transposase DDE domain protein	A0A146ICT8	Staphylococcus_phage	7.7e-15	93.2
AWR07637.1\|1403480_1403648_+\|transposase	putative transposase	Q9MBP7	Staphylococcus_prophage	2.9e-19	89.1
AWR09202.1\|1403703_1404840_-	telA-like protein	A0A291I9K4	Lactobacillus_phage	7.4e-34	28.3
AWR08262.1\|1404871_1405459_-\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	NA	NA	NA	NA
AWR09085.1\|1405519_1405789_-	acylphosphatase family protein	NA	NA	NA	NA
AWR06787.1\|1405951_1406260_+	hypothetical protein	NA	NA	NA	NA
AWR08023.1\|1406430_1406631_+	cold shock protein CspA	Q9AZD3	Lactococcus_phage	8.4e-18	66.2
AWR07758.1\|1406827_1407229_+	putative membrane protein	NA	NA	NA	NA
AWR06920.1\|1407468_1408734_-	diaminopimelate decarboxylase	A0A0P0YM38	Yellowstone_lake_phycodnavirus	6.2e-13	23.2

DBSCAN-SWA_8

1501869 : 1507913

Staphylococcus_phage(66.67%)

head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR09022.1\|1501869_1502004_-	hypothetical protein	Q4ZE35	Staphylococcus_virus	2.9e-14	76.2
AWR07988.1\|1502206_1502332_-	hypothetical protein	NA	NA	NA	NA
AWR08100.1\|1502340_1502457_-	hypothetical protein	NA	NA	NA	NA
AWR07803.1\|1502883_1503132_-	hypothetical protein	NA	NA	NA	NA
AWR08048.1\|1503252_1503837_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	Q4ZE35	Staphylococcus_virus	2.0e-30	72.0
AWR08701.1\|1503882_1504134_-	hypothetical protein	NA	NA	NA	NA
AWR08712.1\|1504878_1505064_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
AWR08187.1\|1506302_1506509_-	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
AWR08293.1\|1506802_1507015_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	3.1e-18	71.0
AWR09074.1\|1507715_1507913_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4

DBSCAN-SWA_9

1764624 : 1773097

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR07473.1\|1764624_1765191_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AWR08781.1\|1765193_1766222_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
AWR08665.1\|1766214_1767699_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AWR08108.1\|1767677_1769867_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.0e-140	39.7
AWR07799.1\|1769859_1770531_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWR07268.1\|1770532_1770796_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWR08231.1\|1770795_1771500_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AWR06779.1\|1771503_1772628_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWR06839.1\|1772614_1773097_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_10

2017884 : 2032615

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR06746.1\|2017884_2018646_-	ABC transporter family protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6
AWR08937.1\|2018642_2019599_-	fecCD transport family protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWR09040.1\|2019585_2020557_-	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AWR07241.1\|2020595_2020751_-	hypothetical protein	NA	NA	NA	NA
AWR06890.1\|2021264_2022236_-	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AWR06991.1\|2022353_2024459_-	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWR07529.1\|2024421_2024820_-	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWR07897.1\|2025620_2026487_+	eamA-like transporter family protein	NA	NA	NA	NA
AWR06617.1\|2026506_2027007_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWR08494.1\|2027347_2028853_+	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWR07560.1\|2029122_2030040_+	putative lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AWR07609.1\|2030663_2031206_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWR07865.1\|2031556_2032615_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_11

2044587 : 2052407

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR08881.1\|2044587_2045739_-	chorismate binding enzyme family protein	A0A0B5J984	Pandoravirus	1.6e-23	35.7
AWR06613.1\|2045722_2046190_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	2.3e-29	43.2
AWR07889.1\|2046666_2047335_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWR06861.1\|2047336_2047756_+	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWR07953.1\|2047759_2048473_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWR07362.1\|2048571_2049156_+	putative membrane protein	NA	NA	NA	NA
AWR07093.1\|2049435_2049876_+	electron transfer DM13 family protein	NA	NA	NA	NA
AWR07788.1\|2050217_2050691_+	doxX family protein	NA	NA	NA	NA
AWR09103.1\|2050665_2051352_+	response regulator	NA	NA	NA	NA
AWR06577.1\|2051351_2052407_+	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	2.1e-14	30.0

DBSCAN-SWA_12

2758319 : 2801833

Staphylococcus_phage(50.0%)

integrase,transposase

attL 2760763:2760822|attR 2801834:2801893

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR08639.1\|2758319_2759333_-\|transposase	transposase IS116/IS110/IS902 family protein	A0A1X9I619	Streptococcus_phage	6.0e-51	38.0
AWR08200.1\|2759819_2760635_-	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
2760763:2760822	attL	NA	NA	NA	NA
AWR07902.1\|2760822_2761188_-	DDE domain protein	A0A0N9RU54	Staphylococcus_phage	1.3e-61	95.9
AWR06939.1\|2761250_2761496_-\|transposase	putative transposase	A0A0N9RU54	Staphylococcus_phage	1.9e-32	98.5
AWR08539.1\|2761539_2761692_+	putative cadmium-transporting ATPase domain protein	NA	NA	NA	NA
AWR08732.1\|2761768_2762200_-	universal stress family protein	NA	NA	NA	NA
AWR09107.1\|2762701_2763148_+	arginine repressor, C-terminal domain protein	NA	NA	NA	NA
AWR08403.1\|2763416_2764652_+	arginine deiminase	NA	NA	NA	NA
AWR08774.1\|2764737_2766159_+	arginine-ornithine antiporter	NA	NA	NA	NA
AWR09213.1\|2766200_2766890_+	HTH-type transcriptional regulator ArcR	NA	NA	NA	NA
AWR07618.1\|2766927_2767926_+	ornithine carbamoyltransferase	NA	NA	NA	NA
AWR06700.1\|2767945_2768875_+	carbamate kinase	NA	NA	NA	NA
AWR08174.1\|2768974_2769799_-\|integrase	integrase core domain protein	A0A0N9SIX5	Staphylococcus_phage	2.9e-64	89.4
AWR08046.1\|2770782_2771133_+	hypothetical protein	NA	NA	NA	NA
AWR08299.1\|2771366_2771531_+	hypothetical protein	NA	NA	NA	NA
AWR07711.1\|2771546_2772050_+	hypothetical protein	NA	NA	NA	NA
AWR06847.1\|2772153_2772288_+	hypothetical protein	NA	NA	NA	NA
AWR06826.1\|2772542_2773670_-	alcohol dehydrogenase GroES-like domain protein	A0A2K9L7I1	Tupanvirus	6.9e-16	30.9
AWR08384.1\|2773851_2773980_+	hypothetical protein	NA	NA	NA	NA
AWR08997.1\|2774167_2774665_+	acetyltransferase domain protein	NA	NA	NA	NA
AWR07975.1\|2774975_2775128_-	hypothetical protein	NA	NA	NA	NA
AWR08775.1\|2775176_2775986_+\|integrase	integrase core domain protein	A0A0N9SIX5	Staphylococcus_phage	6.4e-56	94.8
AWR08373.1\|2776556_2776916_+	tic20-like family protein	NA	NA	NA	NA
AWR07412.1\|2776992_2777322_-	hypothetical protein	NA	NA	NA	NA
AWR06567.1\|2777413_2777605_-	hypothetical protein	NA	NA	NA	NA
AWR07517.1\|2777701_2778667_-	HNH endonuclease family protein	NA	NA	NA	NA
AWR07317.1\|2779068_2779239_+	hypothetical protein	NA	NA	NA	NA
AWR08182.1\|2780155_2780776_-	hypothetical protein	NA	NA	NA	NA
AWR08336.1\|2780904_2781276_-	HNH endonuclease family protein	NA	NA	NA	NA
AWR09105.1\|2781272_2781410_-	hypothetical protein	NA	NA	NA	NA
AWR07770.1\|2781528_2782533_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
AWR08582.1\|2782610_2782784_+	putative rhodanese-like protein	NA	NA	NA	NA
AWR08281.1\|2783156_2784647_-	divergent AAA domain protein	NA	NA	NA	NA
AWR07201.1\|2785319_2786369_-	putative actin depolymerizing protein	NA	NA	NA	NA
AWR07311.1\|2786507_2786798_+	hypothetical protein	NA	NA	NA	NA
AWR06770.1\|2786797_2788585_+	hypothetical protein	NA	NA	NA	NA
AWR07938.1\|2788818_2790168_+	resolvase, N terminal domain protein	Q9T200	Bacillus_phage	1.4e-18	24.8
AWR08092.1\|2790189_2791818_+	recombinase family protein	A0A0S2SXR4	Bacillus_phage	5.4e-46	31.4
AWR08497.1\|2792552_2792690_+	hypothetical protein	NA	NA	NA	NA
AWR08243.1\|2792776_2793088_+	hypothetical protein	NA	NA	NA	NA
AWR08703.1\|2793102_2793609_+	hypothetical protein	NA	NA	NA	NA
AWR08307.1\|2793744_2795268_+\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.6e-209	75.2
AWR06849.1\|2795258_2795519_-	hypothetical protein	NA	NA	NA	NA
AWR06699.1\|2795490_2796477_-	blaR1 peptidase M56 family protein	NA	NA	NA	NA
AWR08948.1\|2796576_2798583_+	penicillin-binding protein 2'	NA	NA	NA	NA
AWR06554.1\|2798628_2799057_-	maoC like domain protein	NA	NA	NA	NA
AWR07482.1\|2799153_2799897_-	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA
AWR06919.1\|2800733_2800901_-	HMG-CoA synthase domain protein	NA	NA	NA	NA
AWR07181.1\|2801158_2801833_+\|integrase	integrase core domain protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
2801834:2801893	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: CP029667.1|AWR06787.1|1405951_1406260_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP029667.1|AWR06787.1|1405951_1406260_+|hypothetical-protein

1405951_1406260_+

102 aa aa

1316455-1408734

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP029667_1	Orphan	1.3\|423604\|33\|CP029667\|CRT	423604-423636	33	1376531-1376563	2
CP029667_3	Orphan	3.1\|782382\|33\|CP029667\|CRISPRCasFinder	782382-782414	33	1376531-1376563	2
CP029667_5	Orphan	5.1\|1940792\|34\|CP029667\|CRISPRCasFinder	1940792-1940825	34	1376576-1376609	0
CP029667_10	Orphan	10.2\|2880227\|16\|CP029667\|PILER-CR	2880227-2880242	16	1376548-1376563	0

1. spacer 1.3|423604|33|CP029667|CRT matches to CP029667 position: 1376531-1376563, mismatch: 2

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
******.*************** **********

2. spacer 3.1|782382|33|CP029667|CRISPRCasFinder matches to CP029667 position: 1376531-1376563, mismatch: 2

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
****** *******************.******

3. spacer 5.1|1940792|34|CP029667|CRISPRCasFinder matches to CP029667 position: 1376576-1376609, mismatch: 0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

4. spacer 10.2|2880227|16|CP029667|PILER-CR matches to CP029667 position: 1376548-1376563, mismatch: 0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029666

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP029667

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information