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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029654 Staphylococcus aureus strain AR_0469 plasmid unnamed1, complete sequence 0 crisprs csa3 0 0 0 0
CP029655 Staphylococcus aureus strain AR_0469 chromosome, complete genome 8 crisprs csa3,WYL,RT,DEDDh,cas3,DinG 8 2 8 0

Results visualization

1. CP029655
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_1 141627-141729 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_3 917275-917353 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_4 1082061-1082141 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_6 1202420-1202501 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_7 1331497-1331578 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_8 1765256-1765340 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_9 2554263-2554344 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029655_10 2603004-2603082 Unclear NA
1 spacers
cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029655_7 7.1|1331521|34|CP029655|CRISPRCasFinder 1331521-1331554 34 CP029655.1 2247007-2247040 0 1.0
CP029655_7 7.1|1331521|34|CP029655|CRISPRCasFinder 1331521-1331554 34 CP029655.1 2603050-2603083 0 1.0
CP029655_3 3.1|917298|33|CP029655|CRISPRCasFinder 917298-917330 33 CP029655.1 2553974-2554006 1 0.97
CP029655_3 3.1|917298|33|CP029655|CRISPRCasFinder 917298-917330 33 CP029655.1 2590193-2590225 1 0.97
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2590253-2590283 1 0.968
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2590309-2590339 1 0.968
CP029655_7 7.1|1331521|34|CP029655|CRISPRCasFinder 1331521-1331554 34 CP029655.1 1638596-1638629 1 0.971
CP029655_8 8.1|1765282|33|CP029655|CRISPRCasFinder 1765282-1765314 33 CP029655.1 2035265-2035297 1 0.97
CP029655_8 8.1|1765282|33|CP029655|CRISPRCasFinder 1765282-1765314 33 CP029655.1 2597492-2597524 1 0.97
CP029655_9 9.1|2554287|34|CP029655|CRISPRCasFinder 2554287-2554320 34 CP029655.1 2035265-2035298 1 0.971
CP029655_10 10.1|2603028|31|CP029655|CRISPRCasFinder 2603028-2603058 31 CP029655.1 1730827-1730857 1 0.968
CP029655_2 2.1|842129|46|CP029655|PILER-CR 842129-842174 46 CP029655.1 838479-838524 2 0.957
CP029655_2 2.2|842192|37|CP029655|PILER-CR 842192-842228 37 CP029655.1 838542-838578 2 0.946
CP029655_3 3.1|917298|33|CP029655|CRISPRCasFinder 917298-917330 33 CP029655.1 1307553-1307585 2 0.939
CP029655_3 3.1|917298|33|CP029655|CRISPRCasFinder 917298-917330 33 CP029655.1 2590249-2590281 2 0.939
CP029655_3 3.1|917298|33|CP029655|CRISPRCasFinder 917298-917330 33 CP029655.1 2590305-2590337 2 0.939
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 180435-180465 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 475160-475190 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 1092887-1092917 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 1391161-1391191 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 1750646-1750676 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 1946760-1946790 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 1946876-1946906 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2035309-2035339 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2241409-2241439 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2343933-2343963 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2553978-2554008 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2590197-2590227 2 0.935
CP029655_4 4.1|1082086|31|CP029655|CRISPRCasFinder 1082086-1082116 31 CP029655.1 2770712-2770742 2 0.935
CP029655_7 7.1|1331521|34|CP029655|CRISPRCasFinder 1331521-1331554 34 CP029655.1 643943-643976 2 0.941
CP029655_7 7.1|1331521|34|CP029655|CRISPRCasFinder 1331521-1331554 34 CP029655.1 2030891-2030924 2 0.941

1. spacer 7.1|1331521|34|CP029655|CRISPRCasFinder matches to position: 2247007-2247040, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

2. spacer 7.1|1331521|34|CP029655|CRISPRCasFinder matches to position: 2603050-2603083, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

3. spacer 3.1|917298|33|CP029655|CRISPRCasFinder matches to position: 2553974-2554006, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

4. spacer 3.1|917298|33|CP029655|CRISPRCasFinder matches to position: 2590193-2590225, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

5. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2590253-2590283, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

6. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2590309-2590339, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

7. spacer 7.1|1331521|34|CP029655|CRISPRCasFinder matches to position: 1638596-1638629, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacaaagaatttcgaaaagaaattctacaa	Protospacer
********.*************************

8. spacer 8.1|1765282|33|CP029655|CRISPRCasFinder matches to position: 2035265-2035297, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

9. spacer 8.1|1765282|33|CP029655|CRISPRCasFinder matches to position: 2597492-2597524, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
***************************.*****

10. spacer 9.1|2554287|34|CP029655|CRISPRCasFinder matches to position: 2035265-2035298, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

11. spacer 10.1|2603028|31|CP029655|CRISPRCasFinder matches to position: 1730827-1730857, mismatch: 1, identity: 0.968

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggcaatggaagttggcggggccccaacacag	Protospacer
******* ***********************

12. spacer 2.1|842129|46|CP029655|PILER-CR matches to position: 838479-838524, mismatch: 2, identity: 0.957

acaaagataaacctaattatcaatttggtggacacaacagtgttga	CRISPR spacer
acaaagataaacctaattatcaattcggtggacacaatagtgttga	Protospacer
*************************.***********.********

13. spacer 2.2|842192|37|CP029655|PILER-CR matches to position: 838542-838578, mismatch: 2, identity: 0.946

ttccaaaagtaagtggtcaaaatgaaggtcaacaaac	CRISPR spacer
ttccaaaagtaagcggccaaaatgaaggtcaacaaac	Protospacer
*************.**.********************

14. spacer 3.1|917298|33|CP029655|CRISPRCasFinder matches to position: 1307553-1307585, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaggctggcggaaagtcagcttacaataatg	Protospacer
*** .****************************

15. spacer 3.1|917298|33|CP029655|CRISPRCasFinder matches to position: 2590249-2590281, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

16. spacer 3.1|917298|33|CP029655|CRISPRCasFinder matches to position: 2590305-2590337, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

17. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 180435-180465, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

18. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 475160-475190, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

19. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 1092887-1092917, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

20. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 1391161-1391191, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

21. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 1750646-1750676, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

22. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 1946760-1946790, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

23. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 1946876-1946906, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

24. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2035309-2035339, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

25. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2241409-2241439, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

26. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2343933-2343963, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

27. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2553978-2554008, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

28. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2590197-2590227, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

29. spacer 4.1|1082086|31|CP029655|CRISPRCasFinder matches to position: 2770712-2770742, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

30. spacer 7.1|1331521|34|CP029655|CRISPRCasFinder matches to position: 643943-643976, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaaaagaatttcgaaaagaaattctacaa	Protospacer
****** *.*************************

31. spacer 7.1|1331521|34|CP029655|CRISPRCasFinder matches to position: 2030891-2030924, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgataagaaattccacaa	Protospacer
******************* *********.****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029655_5 5.1|1190121|34|CP029655|CRISPRCasFinder 1190121-1190154 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
CP029655_5 5.1|1190121|34|CP029655|CRISPRCasFinder 1190121-1190154 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765
CP029655_6 6.1|1202445|32|CP029655|CRISPRCasFinder 1202445-1202476 32 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 41454-41485 9 0.719
CP029655_6 6.1|1202445|32|CP029655|CRISPRCasFinder 1202445-1202476 32 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 296489-296520 10 0.688

1. spacer 5.1|1190121|34|CP029655|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

2. spacer 5.1|1190121|34|CP029655|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

3. spacer 6.1|1202445|32|CP029655|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

4. spacer 6.1|1202445|32|CP029655|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 468314 : 527557 56 Staphylococcus_phage(46.15%) integrase,transposase,tRNA attL 521481:521535|attR 526827:526881
DBSCAN-SWA_2 1397902 : 1476602 87 Staphylococcus_phage(62.5%) capsid,transposase,head,terminase,portal,tRNA,tail,integrase,protease,holin attL 1393061:1393078|attR 1420166:1420183
DBSCAN-SWA_3 1514412 : 1576622 62 Staphylococcus_phage(92.0%) tRNA,integrase,transposase,protease attL 1516450:1516466|attR 1551660:1551676
DBSCAN-SWA_4 1706626 : 1715669 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_5 2333979 : 2342452 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_6 2489008 : 2545932 80 Staphylococcus_phage(76.81%) capsid,head,terminase,portal,tail,integrase,transposase,holin attL 2513180:2513196|attR 2547829:2547845
DBSCAN-SWA_7 2633177 : 2645895 10 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_8 2657866 : 2665687 10 Pandoravirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage