CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029680	Staphylococcus aureus strain AR_0215 chromosome, complete genome	8 crisprs	RT,csa3,DEDDh,cas3,DinG	8	2	10	1
CP029679	Staphylococcus aureus strain AR_0215 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029680_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_1

114136-114216

Orphan

Consensus_repeat	Method
CAAGTTGGCGGGGCCCCAACACAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029680_1

>merge|CP029680|1|114136-114216|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGAAGCTGACAGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGA

>CP029680|1|1|114136-114216|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGA	AGCTGACAGAAAGTCAGCTTACAATAATGTG
CAAGTTGGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR12091.1\|111159_111645_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029680.1\|AWR12088.1\|108838_109345_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029680.1\|AWR12103.1\|123517_123682_-\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR12094.1\|112350_112950_+\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029680.1\|AWR12100.1\|118222_119488_+\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029680.1\|AWR12098.1\|116224_116665_-\|marR-family-protein	unknown	unknown	gnl\|CDD\|197670
CP029680.1\|AWR12099.1\|116826_117591_+\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203
CP029680.1\|AWR12102.1\|122955_123273_-\|putative-membrane-protein	unknown	unknown	unknown
CP029680.1\|AWR12086.1\|107028_107634_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226628
CP029680.1\|AWR12096.1\|114568_114919_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029680.1\|AWR12089.1\|109346_109841_-\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP029680.1\|AWR12087.1\|107803_108808_+\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029680.1\|AWR12090.1\|109903_111163_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029680.1\|AWR12101.1\|119604_122772_+\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029680.1\|AWR12092.1\|111658_112105_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029680.1\|AWR12095.1\|112969_113992_+\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
CP029680.1\|AWR12093.1\|112110_112344_+\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP029680.1\|AWR12105.1\|125129_125261_+\|putative-nitrogen-regulation-protein-NIFR3	unknown	unknown	unknown
CP029680.1\|AWR12104.1\|123814_124723_+\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029680.1\|AWR12097.1\|115020_116232_-\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|341042

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR12091.1\|111159_111645_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	9.59347e-51
CP029680.1\|AWR12088.1\|108838_109345_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64
CP029680.1\|AWR12104.1\|123814_124723_+\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.28102e-43
CP029680.1\|AWR12094.1\|112350_112950_+\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP029680.1\|AWR12100.1\|118222_119488_+\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.81413e-143
CP029680.1\|AWR12098.1\|116224_116665_-\|marR-family-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP029680.1\|AWR12099.1\|116826_117591_+\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP029680.1\|AWR12086.1\|107028_107634_+\|ABC-transporter-family-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP029680.1\|AWR12096.1\|114568_114919_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029680.1\|AWR12089.1\|109346_109841_-\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	2.93711e-97
CP029680.1\|AWR12087.1\|107803_108808_+\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP029680.1\|AWR12090.1\|109903_111163_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP029680.1\|AWR12101.1\|119604_122772_+\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029680.1\|AWR12092.1\|111658_112105_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP029680.1\|AWR12095.1\|112969_113992_+\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
CP029680.1\|AWR12093.1\|112110_112344_+\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP029680.1\|AWR12097.1\|115020_116232_-\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.92881e-73

>CP029680.1|AWR12095.1|112969_113992_+|molybdenum-cofactor-biosynthesis-protein-A
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029680.1|AWR12094.1|112350_112950_+|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP029680.1|AWR12093.1|112110_112344_+|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029680.1|AWR12092.1|111658_112105_+|molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029680.1|AWR12091.1|111159_111645_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHGYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP029680.1|AWR12090.1|109903_111163_+|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029680.1|AWR12089.1|109346_109841_-|molybdenum-cofactor-biosynthesis-protein-C
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP029680.1|AWR12088.1|108838_109345_+|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029680.1|AWR12087.1|107803_108808_+|thiF-family-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029680.1|AWR12086.1|107028_107634_+|ABC-transporter-family-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP029680.1|AWR12096.1|114568_114919_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029680.1|AWR12097.1|115020_116232_-|sugar-(and-other)-transporter-family-protein
MTNQGSLNKSPIFTKSFTINFFVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029680.1|AWR12098.1|116224_116665_-|marR-family-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP029680.1|AWR12099.1|116826_117591_+|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029680.1|AWR12100.1|118222_119488_+|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029680.1|AWR12101.1|119604_122772_+|swarming-motility-protein-SwrC
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029680.1|AWR12102.1|122955_123273_-|putative-membrane-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP029680.1|AWR12103.1|123517_123682_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029680.1|AWR12104.1|123814_124723_+|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNINHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>CP029680.1|AWR12105.1|125129_125261_+|putative-nitrogen-regulation-protein-NIFR3
MYGAYLINEYHQDFKSIANFKVLKRMINVMMCYCVLFLEPRIS

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Crispr_ID: CP029680_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_3

234489-234570

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP029680_3

>merge|CP029680|3|234489-234570|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTG

>CP029680|3|3|234489-234570|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAGTAGGAGCGCCTGCGCTAAGCGCATGCA
TAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR12210.1\|231696_232554_+\|cof-like-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223635
CP029680.1\|AWR12213.1\|234586_235678_-\|putative-membrane-protein	unknown	unknown	unknown
CP029680.1\|AWR12216.1\|237394_238060_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187554
CP029680.1\|AWR12221.1\|242809_243253_+\|DNA-protection-during-starvation-protein-1	unknown	unknown	gnl\|CDD\|223854
CP029680.1\|AWR12209.1\|230846_231629_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224044
CP029680.1\|AWR12218.1\|239464_239695_+\|putative-membrane-protein	unknown	unknown	unknown
CP029680.1\|AWR12219.1\|240366_241740_+\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP029680.1\|AWR12211.1\|233211_233370_-\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR12206.1\|224423_226556_-\|PRD-domain-protein	unknown	unknown	gnl\|CDD\|226234
CP029680.1\|AWR12217.1\|238495_239434_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP029680.1\|AWR12208.1\|228809_230615_+\|glutamine-fructose-6-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234729
CP029680.1\|AWR12203.1\|215107_222553_+\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	unknown	unknown	gnl\|CDD\|275089
CP029680.1\|AWR12207.1\|226590_228129_-\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP029680.1\|AWR12212.1\|233362_233533_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950
CP029680.1\|AWR12205.1\|223977_224412_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP029680.1\|AWR12220.1\|242196_242610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP029680.1\|AWR12214.1\|235943_236921_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP029680.1\|AWR12204.1\|222871_223978_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP029680.1\|AWR12222.1\|243373_244084_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP029680.1\|AWR12215.1\|236922_237243_-\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR12221.1\|242809_243253_+\|DNA-protection-during-starvation-protein-1	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP029680.1\|AWR12205.1\|223977_224412_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP029680.1\|AWR12209.1\|230846_231629_+\|ABC-transporter-family-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP029680.1\|AWR12219.1\|240366_241740_+\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP029680.1\|AWR12210.1\|231696_232554_+\|cof-like-hydrolase-family-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	2.39536e-58
CP029680.1\|AWR12206.1\|224423_226556_-\|PRD-domain-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP029680.1\|AWR12217.1\|238495_239434_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP029680.1\|AWR12214.1\|235943_236921_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP029680.1\|AWR12203.1\|215107_222553_+\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.2997e-108
CP029680.1\|AWR12207.1\|226590_228129_-\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP029680.1\|AWR12212.1\|233362_233533_-\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00028059
CP029680.1\|AWR12208.1\|228809_230615_+\|glutamine-fructose-6-phosphate-transaminase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029680.1\|AWR12220.1\|242196_242610_+\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP029680.1\|AWR12204.1\|222871_223978_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP029680.1\|AWR12222.1\|243373_244084_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP029680.1\|AWR12215.1\|236922_237243_-\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP029680.1\|AWR12216.1\|237394_238060_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47

>CP029680.1|AWR12212.1|233362_233533_-|hypothetical-protein
MSPKDTTRFETKPDHQAQFDWKESINFKTKDNQRIPLYIGVLLLYYSRFIIMHNNE
>CP029680.1|AWR12211.1|233211_233370_-|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP029680.1|AWR12210.1|231696_232554_+|cof-like-hydrolase-family-protein
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTLDVTAYTNEEDGAAKYLAKHFLAD
>CP029680.1|AWR12209.1|230846_231629_+|ABC-transporter-family-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP029680.1|AWR12208.1|228809_230615_+|glutamine-fructose-6-phosphate-transaminase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP029680.1|AWR12207.1|226590_228129_-|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLATLVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP029680.1|AWR12206.1|224423_226556_-|PRD-domain-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP029680.1|AWR12205.1|223977_224412_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP029680.1|AWR12204.1|222871_223978_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP029680.1|AWR12203.1|215107_222553_+|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPAAQPANQGGQANPAGGAAQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGITKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQTANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQITSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEIFKIENITDSTQTKMDAYKEVRQAATARKAQNATVSNATDEEVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNATANTDVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDANNGSTTEEKEAAKQQVQTEKTAADAAIDAAHSNVEVEAAKNAEIAKIEAIQPATTTKDNAKQAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDDNGVDTAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIEDAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALENINNGVDNGDVDDALTQGKAAIDTIQVDATVKPKANQAIEAKAEDTKESIDHSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPVVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNTEVAELQNVTIPAIEAIVPQNDPDANDTNNGTDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTVTSATDDAKDKPQANNNSSADASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGPVANNKAKDMQTNDTQKSVGSAANNKATQNDGANASPATVSNGSHSMHQDMLNVTKPEENKANAKSDQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>CP029680.1|AWR12213.1|234586_235678_-|putative-membrane-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP029680.1|AWR12214.1|235943_236921_-|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP029680.1|AWR12215.1|236922_237243_-|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP029680.1|AWR12216.1|237394_238060_+|NAD-dependent-epimerase/dehydratase-family-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP029680.1|AWR12217.1|238495_239434_+|mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP029680.1|AWR12218.1|239464_239695_+|putative-membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP029680.1|AWR12219.1|240366_241740_+|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP029680.1|AWR12220.1|242196_242610_+|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP029680.1|AWR12221.1|242809_243253_+|DNA-protection-during-starvation-protein-1
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP029680.1|AWR12222.1|243373_244084_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: CP029680_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_4

363669-363750

Orphan

Consensus_repeat	Method
ACAATGCAAGTTGGGGTGGGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029680_4

>merge|CP029680|4|363669-363750|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAAACAATGTAAGTTGGGGTGGGGGCC

>CP029680|4|4|363669-363750|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGGCC	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA
ACAATGTAAGTTGGGGTGGGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR12333.1\|363970_365194_-\|putative-succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|181490
CP029680.1\|AWR12341.1\|371296_371443_-\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR12324.1\|354077_354641_-\|accessory-gene-regulator-protein-B	unknown	unknown	gnl\|CDD\|226899
CP029680.1\|AWR12337.1\|368841_369879_-\|integrase	unknown	unknown	gnl\|CDD\|271189
CP029680.1\|AWR12332.1\|362219_363527_-\|ktr-system-potassium-uptake-protein-B	unknown	unknown	gnl\|CDD\|273349
CP029680.1\|AWR12331.1\|360063_361680_+\|chaperonin-GroL	unknown	unknown	gnl\|CDD\|234573
CP029680.1\|AWR12339.1\|370861_371044_-\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR12336.1\|367960_368785_-\|sphingomyelin-phosphodiesterase	unknown	unknown	gnl\|CDD\|132436
CP029680.1\|AWR12330.1\|359703_359988_+\|10-kDa-chaperonin	unknown	unknown	gnl\|CDD\|178988
CP029680.1\|AWR12334.1\|365629_366685_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369625
CP029680.1\|AWR12327.1\|356756_357383_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP029680.1\|AWR12340.1\|371114_371300_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376389
CP029680.1\|AWR12329.1\|358785_359529_-\|CAAX-protease-self-immunity-family-protein	unknown	unknown	gnl\|CDD\|376806
CP029680.1\|AWR12338.1\|370069_370783_-\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029680.1\|AWR12342.1\|371516_372371_-\|HIRAN-domain-protein	unknown	unknown	gnl\|CDD\|214906
CP029680.1\|AWR12326.1\|355610_356396_-\|hydrolase,-carbon-nitrogen-family	unknown	unknown	gnl\|CDD\|143607
CP029680.1\|AWR12323.1\|353931_354075_-\|cyclic-lactone-autoinducer-peptide-family-protein	unknown	unknown	gnl\|CDD\|129030
CP029680.1\|AWR12328.1\|357579_358761_+\|putative-sdrH-protein	unknown	unknown	gnl\|CDD\|236768
CP029680.1\|AWR12335.1\|366706_367723_+\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|369625
CP029680.1\|AWR12325.1\|354876_355011_+\|delta-hemolysin-domain-protein	unknown	unknown	gnl\|CDD\|173213

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR12333.1\|363970_365194_-\|putative-succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
CP029680.1\|AWR12324.1\|354077_354641_-\|accessory-gene-regulator-protein-B	gnl\|CDD\|226899	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription].	6.65966e-71
CP029680.1\|AWR12337.1\|368841_369879_-\|integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.96401e-25
CP029680.1\|AWR12332.1\|362219_363527_-\|ktr-system-potassium-uptake-protein-B	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	7.96864e-82
CP029680.1\|AWR12331.1\|360063_361680_+\|chaperonin-GroL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP029680.1\|AWR12336.1\|367960_368785_-\|sphingomyelin-phosphodiesterase	gnl\|CDD\|132436	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins. [Cellular processes, Pathogenesis].	4.43323e-127
CP029680.1\|AWR12330.1\|359703_359988_+\|10-kDa-chaperonin	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP029680.1\|AWR12334.1\|365629_366685_+\|hypothetical-protein	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.84035e-77
CP029680.1\|AWR12327.1\|356756_357383_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	8.42197e-117
CP029680.1\|AWR12340.1\|371114_371300_-\|hypothetical-protein	gnl\|CDD\|376389	pfam00815, Histidinol_dh, Histidinol dehydrogenase.	0.00485103
CP029680.1\|AWR12329.1\|358785_359529_-\|CAAX-protease-self-immunity-family-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP029680.1\|AWR12338.1\|370069_370783_-\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	0.000176738
CP029680.1\|AWR12342.1\|371516_372371_-\|HIRAN-domain-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	5.87951e-12
CP029680.1\|AWR12326.1\|355610_356396_-\|hydrolase,-carbon-nitrogen-family	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	5.69545e-126
CP029680.1\|AWR12323.1\|353931_354075_-\|cyclic-lactone-autoinducer-peptide-family-protein	gnl\|CDD\|129030	smart00794, AgrD, Staphylococcal AgrD protein. This family consists of several AgrD proteins from many Staphylococcus species. The agr locus was initially described in Staphylococcus aureus as an element controlling the production of exoproteins implicated in virulence. Its pattern of action has been shown to be complex, upregulating certain extracellular toxins and enzymes expressed post-exponentially and repressing some exponential-phase surface components. AgrD encodes the precursor of the autoinducing peptide (AIP).The AIP derived from AgrD by the action of AgrB interacts with AgrC in the membrane to activate AgrA, which upregulates transcription both from promoter P2, amplifying the response, and from P3, initiating the production of a novel effector: RNAIII. In S. aureus, delta-hemolysin is the only translation product of RNA III and is not involved in the regulatory functions of the transcript, which is therefore the primary agent for modulating the expression of other operons controlled by agr.	3.13559e-15
CP029680.1\|AWR12328.1\|357579_358761_+\|putative-sdrH-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	1.31238e-06
CP029680.1\|AWR12335.1\|366706_367723_+\|gamma-hemolysin-component-B	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.05827e-99
CP029680.1\|AWR12325.1\|354876_355011_+\|delta-hemolysin-domain-protein	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15

>CP029680.1|AWR12332.1|362219_363527_-|ktr-system-potassium-uptake-protein-B
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQHMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSAAGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>CP029680.1|AWR12331.1|360063_361680_+|chaperonin-GroL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP029680.1|AWR12330.1|359703_359988_+|10-kDa-chaperonin
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP029680.1|AWR12329.1|358785_359529_-|CAAX-protease-self-immunity-family-protein
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP029680.1|AWR12328.1|357579_358761_+|putative-sdrH-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDKPKPNPNPKPDPNKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP029680.1|AWR12327.1|356756_357383_-|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSKEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP029680.1|AWR12326.1|355610_356396_-|hydrolase,-carbon-nitrogen-family
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNYQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP029680.1|AWR12325.1|354876_355011_+|delta-hemolysin-domain-protein
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP029680.1|AWR12324.1|354077_354641_-|accessory-gene-regulator-protein-B
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQIIVGNFFKILVTYSISIFLSVFLFTLVTHLSYMLIRYNAHGAHAKSSILCYIQSILTFVFVPYFLINIDINFTYLLALSIIGLISVVIYAPAATKKQPIPIKLVKRKKYLSIIMYLLVLILSLIIHPFYAQFMLLGILVESITLLPIFFPKED
>CP029680.1|AWR12323.1|353931_354075_-|cyclic-lactone-autoinducer-peptide-family-protein
MNTLVNMFFDFIIKLAKAIGIVGGVNACSSLFDEPKVPAELTNLYDK
>CP029680.1|AWR12333.1|363970_365194_-|putative-succinyl-diaminopimelate-desuccinylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKAGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINDVDSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>CP029680.1|AWR12334.1|365629_366685_+|hypothetical-protein
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNRKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>CP029680.1|AWR12335.1|366706_367723_+|gamma-hemolysin-component-B
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTEPNYDKETVFIKAKGTIGSGLRILDPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>CP029680.1|AWR12336.1|367960_368785_-|sphingomyelin-phosphodiesterase
MYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNIHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTWDPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYNDFSDHYPIKAYSK
>CP029680.1|AWR12337.1|368841_369879_-|integrase
MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLEEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGSIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>CP029680.1|AWR12338.1|370069_370783_-|pemK-like-family-protein
MTHNIEKRINKLKTSGNPKFKKLDSDIHYLLKRFEGEKNHKGFYPKFKQGEIVFVDFGINVNKEFSNSHFAIVMNKNDSNTEDIVNVIPLSSKENKKYLKMNFDLKWEYYLRLFLNLISAQNNSAILKEVFDKKYQKNNTEFITKDYFSEFISDSLEIENKLNKIDRNINNIVSAIDKVKKLKGNSYACINSFQPISKFRIRKVLPQKIKNPVIDSSDIMLLINRINNNILQIPDIR
>CP029680.1|AWR12339.1|370861_371044_-|hypothetical-protein
MKITNCKIKRETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKIDGDKLTKEDSL
>CP029680.1|AWR12340.1|371114_371300_-|hypothetical-protein
MSTYKEIEHLHINTGGKELTQEQIEEAKAFIDSQEFKDMIREAKESHQRVMESKITDRTKL
>CP029680.1|AWR12341.1|371296_371443_-|hypothetical-protein
MDFKEVDINIEEWEMVEIPFYTEEELTYRLNNGLPITKSELEEQESKK
>CP029680.1|AWR12342.1|371516_372371_-|HIRAN-domain-protein
MKPRKQDEKILSDQYSYFEPIISDSCDIKFDENKRRMGSIFISHEEICFIRKEEDYIFKISLSEVIDYNTVVTIWKNQAFLTLNDNRKLTVYFVTNSPLTGFISILKTYMQLSKNKETIISNDCLPINDDEQTKVEIFDVVGLNYEGRRKELKKLIKKMKNNDDFFFLYSDLKGNELKEELLYEDKVYEISDYEVIPGVFLQKEPDNPYDENAIKVMISNEYSEFHVGYVPREYASRLVNHMDNIVSCNAYINGGKYKTLDYLEEKIVTKESDYGLRVHLEYKV

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Crispr_ID: CP029680_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_5

796351-796435

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029680_5

>merge|CP029680|5|796351-796435|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACACAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>CP029680|5|5|796351-796435|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR12762.1\|806517_807225_+\|putative-membrane-bound-serine-protease	unknown	unknown	gnl\|CDD\|223961
CP029680.1\|AWR12756.1\|799672_801505_+\|chaperone-protein-DnaK	unknown	unknown	gnl\|CDD\|234715
CP029680.1\|AWR12747.1\|789245_789923_+\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	unknown	unknown	gnl\|CDD\|224472
CP029680.1\|AWR12757.1\|801640_802780_+\|chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP029680.1\|AWR12758.1\|802783_803722_+\|ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP029680.1\|AWR12751.1\|793757_794009_-\|ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP029680.1\|AWR12745.1\|788124_788478_+\|ribosomal-silencing-factor-RsfS	unknown	unknown	gnl\|CDD\|223870
CP029680.1\|AWR12761.1\|806121_806298_+\|ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP029680.1\|AWR12748.1\|790014_790476_+\|comE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP029680.1\|AWR12749.1\|790501_792682_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP029680.1\|AWR12753.1\|796743_797868_+\|radical-SAM-superfamily-protein	unknown	unknown	gnl\|CDD\|236309
CP029680.1\|AWR12750.1\|792738_793713_+\|DNA-polymerase-III,-delta-subunit	unknown	unknown	gnl\|CDD\|235511
CP029680.1\|AWR12752.1\|794354_796178_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
CP029680.1\|AWR12755.1\|798977_799604_+\|protein-GrpE	unknown	unknown	gnl\|CDD\|237622
CP029680.1\|AWR12743.1\|786980_787550_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP029680.1\|AWR12746.1\|788480_789197_+\|methyltransferase-type-12	unknown	unknown	gnl\|CDD\|379312
CP029680.1\|AWR12760.1\|804482_805829_+\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP029680.1\|AWR12759.1\|803723_804476_+\|ribosomal-RNA-small-subunit-methyltransferase-E	unknown	unknown	gnl\|CDD\|224303
CP029680.1\|AWR12744.1\|787539_788124_+\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224627
CP029680.1\|AWR12754.1\|797968_798946_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR12762.1\|806517_807225_+\|putative-membrane-bound-serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	5.49862e-65
CP029680.1\|AWR12756.1\|799672_801505_+\|chaperone-protein-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP029680.1\|AWR12747.1\|789245_789923_+\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.07958e-34
CP029680.1\|AWR12757.1\|801640_802780_+\|chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP029680.1\|AWR12758.1\|802783_803722_+\|ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP029680.1\|AWR12751.1\|793757_794009_-\|ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP029680.1\|AWR12745.1\|788124_788478_+\|ribosomal-silencing-factor-RsfS	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP029680.1\|AWR12761.1\|806121_806298_+\|ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP029680.1\|AWR12748.1\|790014_790476_+\|comE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
CP029680.1\|AWR12749.1\|790501_792682_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.61928e-90
CP029680.1\|AWR12753.1\|796743_797868_+\|radical-SAM-superfamily-protein	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP029680.1\|AWR12750.1\|792738_793713_+\|DNA-polymerase-III,-delta-subunit	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP029680.1\|AWR12752.1\|794354_796178_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP029680.1\|AWR12755.1\|798977_799604_+\|protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP029680.1\|AWR12743.1\|786980_787550_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP029680.1\|AWR12746.1\|788480_789197_+\|methyltransferase-type-12	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.79783e-16
CP029680.1\|AWR12760.1\|804482_805829_+\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP029680.1\|AWR12759.1\|803723_804476_+\|ribosomal-RNA-small-subunit-methyltransferase-E	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP029680.1\|AWR12744.1\|787539_788124_+\|HD-domain-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP029680.1\|AWR12754.1\|797968_798946_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119

>CP029680.1|AWR12752.1|794354_796178_+|GTP-binding-protein-LepA
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP029680.1|AWR12751.1|793757_794009_-|ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP029680.1|AWR12750.1|792738_793713_+|DNA-polymerase-III,-delta-subunit
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP029680.1|AWR12749.1|790501_792682_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP029680.1|AWR12748.1|790014_790476_+|comE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP029680.1|AWR12747.1|789245_789923_+|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP029680.1|AWR12746.1|788480_789197_+|methyltransferase-type-12
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP029680.1|AWR12745.1|788124_788478_+|ribosomal-silencing-factor-RsfS
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP029680.1|AWR12744.1|787539_788124_+|HD-domain-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP029680.1|AWR12743.1|786980_787550_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
>CP029680.1|AWR12753.1|796743_797868_+|radical-SAM-superfamily-protein
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP029680.1|AWR12754.1|797968_798946_+|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP029680.1|AWR12755.1|798977_799604_+|protein-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP029680.1|AWR12756.1|799672_801505_+|chaperone-protein-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP029680.1|AWR12757.1|801640_802780_+|chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP029680.1|AWR12758.1|802783_803722_+|ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP029680.1|AWR12759.1|803723_804476_+|ribosomal-RNA-small-subunit-methyltransferase-E
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP029680.1|AWR12760.1|804482_805829_+|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP029680.1|AWR12761.1|806121_806298_+|ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP029680.1|AWR12762.1|806517_807225_+|putative-membrane-bound-serine-protease
MSYNNFLQMTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD

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Crispr_ID: CP029680_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_6

1674902-1674983

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029680_6

>merge|CP029680|6|1674902-1674983|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACACAGAGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGGG

>CP029680|6|6|1674902-1674983|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACACAGAGAAATTGGATTCTCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR13632.1\|1677652_1678192_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
CP029680.1\|AWR13630.1\|1676681_1677038_-\|transcriptional-regulator,-Spx/MgsR-family-protein	unknown	unknown	gnl\|CDD\|239334
CP029680.1\|AWR13636.1\|1680607_1681225_+\|lysE-type-translocator-family-protein	unknown	unknown	gnl\|CDD\|224198
CP029680.1\|AWR13624.1\|1672339_1673365_-\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP029680.1\|AWR13625.1\|1673614_1673911_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029680.1\|AWR13633.1\|1678274_1678991_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP029680.1\|AWR13627.1\|1675086_1675965_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395
CP029680.1\|AWR13621.1\|1670264_1670459_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP029680.1\|AWR13620.1\|1669179_1670031_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP029680.1\|AWR13623.1\|1671651_1672305_-\|methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP029680.1\|AWR13631.1\|1677181_1677502_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029680.1\|AWR13619.1\|1668090_1668852_-\|feS-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP029680.1\|AWR13626.1\|1673903_1674290_-\|toprim-domain-protein	unknown	unknown	gnl\|CDD\|224572
CP029680.1\|AWR13634.1\|1679137_1679560_+\|peroxiredoxin,-Ohr-subfamily-protein	unknown	unknown	gnl\|CDD\|274649
CP029680.1\|AWR13629.1\|1676143_1676524_-\|glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP029680.1\|AWR13628.1\|1675966_1676080_-\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR13635.1\|1679958_1680453_+\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|372596
CP029680.1\|AWR13622.1\|1670812_1671634_-\|NLPA-lipofamily-protein	unknown	unknown	gnl\|CDD\|224381
CP029680.1\|AWR13617.1\|1665329_1666571_-\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP029680.1\|AWR13618.1\|1666685_1667993_-\|feS-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR13632.1\|1677652_1678192_-\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP029680.1\|AWR13630.1\|1676681_1677038_-\|transcriptional-regulator,-Spx/MgsR-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP029680.1\|AWR13636.1\|1680607_1681225_+\|lysE-type-translocator-family-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP029680.1\|AWR13624.1\|1672339_1673365_-\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170
CP029680.1\|AWR13625.1\|1673614_1673911_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP029680.1\|AWR13633.1\|1678274_1678991_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP029680.1\|AWR13627.1\|1675086_1675965_-\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77
CP029680.1\|AWR13621.1\|1670264_1670459_-\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP029680.1\|AWR13620.1\|1669179_1670031_+\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	7.67366e-77
CP029680.1\|AWR13623.1\|1671651_1672305_-\|methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	8.5871e-98
CP029680.1\|AWR13631.1\|1677181_1677502_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP029680.1\|AWR13619.1\|1668090_1668852_-\|feS-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP029680.1\|AWR13626.1\|1673903_1674290_-\|toprim-domain-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP029680.1\|AWR13634.1\|1679137_1679560_+\|peroxiredoxin,-Ohr-subfamily-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP029680.1\|AWR13629.1\|1676143_1676524_-\|glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP029680.1\|AWR13635.1\|1679958_1680453_+\|acetyltransferase-domain-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	1.02873e-46
CP029680.1\|AWR13622.1\|1670812_1671634_-\|NLPA-lipofamily-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP029680.1\|AWR13617.1\|1665329_1666571_-\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP029680.1\|AWR13618.1\|1666685_1667993_-\|feS-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135

>CP029680.1|AWR13626.1|1673903_1674290_-|toprim-domain-protein
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP029680.1|AWR13625.1|1673614_1673911_-|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP029680.1|AWR13624.1|1672339_1673365_-|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP029680.1|AWR13623.1|1671651_1672305_-|methionine-import-system-permease-protein-MetP
MPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP029680.1|AWR13622.1|1670812_1671634_-|NLPA-lipofamily-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP029680.1|AWR13621.1|1670264_1670459_-|hypothetical-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP029680.1|AWR13620.1|1669179_1670031_+|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>CP029680.1|AWR13619.1|1668090_1668852_-|feS-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP029680.1|AWR13618.1|1666685_1667993_-|feS-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP029680.1|AWR13617.1|1665329_1666571_-|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF
>CP029680.1|AWR13627.1|1675086_1675965_-|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP029680.1|AWR13628.1|1675966_1676080_-|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP029680.1|AWR13629.1|1676143_1676524_-|glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP029680.1|AWR13630.1|1676681_1677038_-|transcriptional-regulator,-Spx/MgsR-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP029680.1|AWR13631.1|1677181_1677502_+|thioredoxin-family-protein
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP029680.1|AWR13632.1|1677652_1678192_-|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP029680.1|AWR13633.1|1678274_1678991_-|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP029680.1|AWR13634.1|1679137_1679560_+|peroxiredoxin,-Ohr-subfamily-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP029680.1|AWR13635.1|1679958_1680453_+|acetyltransferase-domain-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNAYFDEHWLFYDLINK
>CP029680.1|AWR13636.1|1680607_1681225_+|lysE-type-translocator-family-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF

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Crispr_ID: CP029680_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_7

1723586-1723664

Unclear

Consensus_repeat	Method
AGAATTTCGAAAAGAAATTCTACA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029680_7

>merge|CP029680|7|1723586-1723664|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACA

>CP029680|7|7|1723586-1723664|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACA	GGCAATGCAAGTTGGCGGGGCCCCAACACAG
AGAATTTCGAAAAGAAATTCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR13679.1\|1726844_1728830_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029680.1\|AWR13682.1\|1730155_1730995_-\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451
CP029680.1\|AWR13669.1\|1713612_1714200_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029680.1\|AWR13684.1\|1732828_1735360_-\|preprotein-translocase,-SecA-subunit	unknown	unknown	gnl\|CDD\|237259
CP029680.1\|AWR13685.1\|1735773_1736346_-\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP029680.1\|AWR13672.1\|1716810_1717722_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029680.1\|AWR13681.1\|1729331_1729982_-\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029680.1\|AWR13678.1\|1723990_1726837_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029680.1\|AWR13680.1\|1729098_1729335_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234
CP029680.1\|AWR13670.1\|1714763_1715708_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029680.1\|AWR13674.1\|1719609_1721049_-\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276808
CP029680.1\|AWR13673.1\|1718607_1719543_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029680.1\|AWR13675.1\|1721056_1721338_-\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100047
CP029680.1\|AWR13676.1\|1721549_1722389_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029680.1\|AWR13677.1\|1722394_1723327_-\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029680.1\|AWR13686.1\|1736406_1737081_-\|putative-amidophosphoribosyltransferase,-ComFC	unknown	unknown	gnl\|CDD\|223970
CP029680.1\|AWR13668.1\|1712467_1713370_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029680.1\|AWR13671.1\|1715818_1716814_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029680.1\|AWR13683.1\|1731403_1732396_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP029680.1\|AWR13687.1\|1737073_1738027_-\|type-III-restriction-enzyme,-res-subunit	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR13679.1\|1726844_1728830_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029680.1\|AWR13682.1\|1730155_1730995_-\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
CP029680.1\|AWR13669.1\|1713612_1714200_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029680.1\|AWR13684.1\|1732828_1735360_-\|preprotein-translocase,-SecA-subunit	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP029680.1\|AWR13685.1\|1735773_1736346_-\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP029680.1\|AWR13672.1\|1716810_1717722_-\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029680.1\|AWR13681.1\|1729331_1729982_-\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029680.1\|AWR13678.1\|1723990_1726837_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029680.1\|AWR13680.1\|1729098_1729335_-\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
CP029680.1\|AWR13670.1\|1714763_1715708_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029680.1\|AWR13674.1\|1719609_1721049_-\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP029680.1\|AWR13673.1\|1718607_1719543_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029680.1\|AWR13675.1\|1721056_1721338_-\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	5.13458e-26
CP029680.1\|AWR13676.1\|1721549_1722389_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP029680.1\|AWR13677.1\|1722394_1723327_-\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029680.1\|AWR13686.1\|1736406_1737081_-\|putative-amidophosphoribosyltransferase,-ComFC	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.0058e-51
CP029680.1\|AWR13668.1\|1712467_1713370_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP029680.1\|AWR13671.1\|1715818_1716814_-\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029680.1\|AWR13683.1\|1731403_1732396_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP029680.1\|AWR13687.1\|1737073_1738027_-\|type-III-restriction-enzyme,-res-subunit	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.05277e-176

>CP029680.1|AWR13677.1|1722394_1723327_-|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029680.1|AWR13676.1|1721549_1722389_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029680.1|AWR13675.1|1721056_1721338_-|bacterial-transferase-hexapeptide-family-protein
MLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029680.1|AWR13674.1|1719609_1721049_-|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029680.1|AWR13673.1|1718607_1719543_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029680.1|AWR13672.1|1716810_1717722_-|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029680.1|AWR13671.1|1715818_1716814_-|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029680.1|AWR13670.1|1714763_1715708_-|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029680.1|AWR13669.1|1713612_1714200_-|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029680.1|AWR13668.1|1712467_1713370_+|NAD-dependent-epimerase/dehydratase-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP029680.1|AWR13678.1|1723990_1726837_-|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029680.1|AWR13679.1|1726844_1728830_-|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029680.1|AWR13680.1|1729098_1729335_-|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029680.1|AWR13681.1|1729331_1729982_-|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029680.1|AWR13682.1|1730155_1730995_-|staphyloxanthin-biosynthesis-protein,-putative
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP029680.1|AWR13683.1|1731403_1732396_-|peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP029680.1|AWR13684.1|1732828_1735360_-|preprotein-translocase,-SecA-subunit
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP029680.1|AWR13685.1|1735773_1736346_-|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP029680.1|AWR13686.1|1736406_1737081_-|putative-amidophosphoribosyltransferase,-ComFC
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP029680.1|AWR13687.1|1737073_1738027_-|type-III-restriction-enzyme,-res-subunit
MRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

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Crispr_ID: CP029680_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_8

2119686-2119788

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029680_8

>merge|CP029680|8|2119686-2119788|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>CP029680|8|8|2119686-2119788|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR14025.1\|2117932_2118595_+\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR14021.1\|2113519_2114986_-\|inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP029680.1\|AWR14030.1\|2123946_2125470_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP029680.1\|AWR14024.1\|2117382_2117790_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP029680.1\|AWR14029.1\|2123361_2123931_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP029680.1\|AWR14031.1\|2125649_2125841_+\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR14028.1\|2122114_2122870_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP029680.1\|AWR14017.1\|2109537_2109810_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|225511
CP029680.1\|AWR14026.1\|2118712_2119669_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
CP029680.1\|AWR14036.1\|2128816_2129080_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
CP029680.1\|AWR14022.1\|2115023_2116292_-\|xanthine-permease-family-protein	unknown	unknown	gnl\|CDD\|274468
CP029680.1\|AWR14018.1\|2110208_2110913_+\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029680.1\|AWR14019.1\|2111304_2111841_+\|hypothetical-protein	unknown	unknown	unknown
CP029680.1\|AWR14034.1\|2127258_2127840_-\|histidine-phosphatase-super-family-protein	unknown	unknown	gnl\|CDD\|223483
CP029680.1\|AWR14035.1\|2128265_2128517_-\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
CP029680.1\|AWR14033.1\|2126809_2127193_+\|putative-membrane-protein	unknown	unknown	unknown
CP029680.1\|AWR14027.1\|2120646_2122035_+\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP029680.1\|AWR14023.1\|2116291_2116870_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP029680.1\|AWR14032.1\|2125913_2126540_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP029680.1\|AWR14020.1\|2111953_2113495_-\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR14021.1\|2113519_2114986_-\|inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP029680.1\|AWR14030.1\|2123946_2125470_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP029680.1\|AWR14028.1\|2122114_2122870_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP029680.1\|AWR14029.1\|2123361_2123931_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP029680.1\|AWR14023.1\|2116291_2116870_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	1.38815e-118
CP029680.1\|AWR14017.1\|2109537_2109810_+\|transposase-family-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
CP029680.1\|AWR14026.1\|2118712_2119669_+\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00265416
CP029680.1\|AWR14036.1\|2128816_2129080_+\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0037414
CP029680.1\|AWR14022.1\|2115023_2116292_-\|xanthine-permease-family-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
CP029680.1\|AWR14018.1\|2110208_2110913_+\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08
CP029680.1\|AWR14034.1\|2127258_2127840_-\|histidine-phosphatase-super-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP029680.1\|AWR14035.1\|2128265_2128517_-\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09
CP029680.1\|AWR14027.1\|2120646_2122035_+\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP029680.1\|AWR14024.1\|2117382_2117790_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP029680.1\|AWR14032.1\|2125913_2126540_+\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP029680.1\|AWR14020.1\|2111953_2113495_-\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0

>CP029680.1|AWR14026.1|2118712_2119669_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP029680.1|AWR14025.1|2117932_2118595_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP029680.1|AWR14024.1|2117382_2117790_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP029680.1|AWR14023.1|2116291_2116870_-|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVVEE
>CP029680.1|AWR14022.1|2115023_2116292_-|xanthine-permease-family-protein
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP029680.1|AWR14021.1|2113519_2114986_-|inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP029680.1|AWR14020.1|2111953_2113495_-|GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP029680.1|AWR14019.1|2111304_2111841_+|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNKIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP029680.1|AWR14018.1|2110208_2110913_+|pemK-like-family-protein
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP029680.1|AWR14017.1|2109537_2109810_+|transposase-family-protein
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
>CP029680.1|AWR14027.1|2120646_2122035_+|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP029680.1|AWR14028.1|2122114_2122870_-|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP029680.1|AWR14029.1|2123361_2123931_+|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP029680.1|AWR14030.1|2123946_2125470_+|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP029680.1|AWR14031.1|2125649_2125841_+|hypothetical-protein
MNEIIMLLRTIPTSKLIQPIMQLFIDNAILNIVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP029680.1|AWR14032.1|2125913_2126540_+|hypothetical-protein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP029680.1|AWR14033.1|2126809_2127193_+|putative-membrane-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP029680.1|AWR14034.1|2127258_2127840_-|histidine-phosphatase-super-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP029680.1|AWR14035.1|2128265_2128517_-|transglycosylase-associated-family-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>CP029680.1|AWR14036.1|2128816_2129080_+|hypothetical-protein
MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHHHEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK

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Crispr_ID: CP029680_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029680_10

2859476-2859554

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029680_10

>merge|CP029680|10|2859476-2859554|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>CP029680|10|9|2859476-2859554|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029680.1\|AWR14689.1\|2865857_2866865_+\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755
CP029680.1\|AWR14691.1\|2867968_2868661_+\|6-carboxyhexanoate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|224342
CP029680.1\|AWR14676.1\|2848862_2850941_-\|sodium/hydrogen-exchanger-family-protein	unknown	unknown	gnl\|CDD\|223104
CP029680.1\|AWR14692.1\|2868671_2869139_+\|queT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
CP029680.1\|AWR14677.1\|2851078_2852488_-\|amino-acid-permease-family-protein	unknown	unknown	gnl\|CDD\|224038
CP029680.1\|AWR14686.1\|2861647_2863381_+\|recF/RecN/SMC-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|224055
CP029680.1\|AWR14678.1\|2852773_2853580_+\|phosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|163441
CP029680.1\|AWR14681.1\|2855007_2856219_-\|drug-resistance-transporter,-Bcr/CflA-subfamily-protein	unknown	unknown	gnl\|CDD\|340878
CP029680.1\|AWR14687.1\|2863833_2864520_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
CP029680.1\|AWR14679.1\|2853642_2854299_-\|peptidase-C39-family-protein	unknown	unknown	gnl\|CDD\|227323
CP029680.1\|AWR14690.1\|2866845_2867958_+\|aminotransferase-class-I-and-II-family-protein	unknown	unknown	gnl\|CDD\|223234
CP029680.1\|AWR14685.1\|2859859_2861623_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224055
CP029680.1\|AWR14693.1\|2869190_2870168_-\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|273388
CP029680.1\|AWR14683.1\|2857119_2858262_-\|glycerate-kinase-family-protein	unknown	unknown	gnl\|CDD\|272872
CP029680.1\|AWR14688.1\|2864497_2865856_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
CP029680.1\|AWR14694.1\|2870169_2871117_-\|gamma-hemolysin-component-C	unknown	unknown	gnl\|CDD\|369625
CP029680.1\|AWR14675.1\|2846892_2848722_+\|amino-acid-permease-family-protein	unknown	unknown	gnl\|CDD\|372624
CP029680.1\|AWR14682.1\|2856400_2857060_-\|putative-membrane-protein	unknown	unknown	unknown
CP029680.1\|AWR14680.1\|2854411_2854885_+\|gyrI-like-small-molecule-binding-domain-protein	unknown	unknown	gnl\|CDD\|226231
CP029680.1\|AWR14684.1\|2858529_2858916_+\|gtrA-like-family-protein	unknown	unknown	gnl\|CDD\|225155

Protein	Function_ID	Function_description	E-value
CP029680.1\|AWR14689.1\|2865857_2866865_+\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
CP029680.1\|AWR14691.1\|2867968_2868661_+\|6-carboxyhexanoate--CoA-ligase-family-protein	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	1.03044e-132
CP029680.1\|AWR14676.1\|2848862_2850941_-\|sodium/hydrogen-exchanger-family-protein	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.68128e-102
CP029680.1\|AWR14692.1\|2868671_2869139_+\|queT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.000903859
CP029680.1\|AWR14677.1\|2851078_2852488_-\|amino-acid-permease-family-protein	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
CP029680.1\|AWR14686.1\|2861647_2863381_+\|recF/RecN/SMC-N-terminal-domain-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.92673e-143
CP029680.1\|AWR14678.1\|2852773_2853580_+\|phosphoesterase-family-protein	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	4.17484e-107
CP029680.1\|AWR14681.1\|2855007_2856219_-\|drug-resistance-transporter,-Bcr/CflA-subfamily-protein	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.81144e-73
CP029680.1\|AWR14687.1\|2863833_2864520_+\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	6.55734e-71
CP029680.1\|AWR14679.1\|2853642_2854299_-\|peptidase-C39-family-protein	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	2.51069e-72
CP029680.1\|AWR14690.1\|2866845_2867958_+\|aminotransferase-class-I-and-II-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	3.40888e-139
CP029680.1\|AWR14685.1\|2859859_2861623_+\|ABC-transporter-family-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.20525e-146
CP029680.1\|AWR14693.1\|2869190_2870168_-\|gamma-hemolysin-component-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
CP029680.1\|AWR14683.1\|2857119_2858262_-\|glycerate-kinase-family-protein	gnl\|CDD\|272872	TIGR00045, Glycerate_kinase, glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation. [Energy metabolism, Other].	0
CP029680.1\|AWR14688.1\|2864497_2865856_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
CP029680.1\|AWR14694.1\|2870169_2871117_-\|gamma-hemolysin-component-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.97441e-93
CP029680.1\|AWR14675.1\|2846892_2848722_+\|amino-acid-permease-family-protein	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.50522e-32
CP029680.1\|AWR14680.1\|2854411_2854885_+\|gyrI-like-small-molecule-binding-domain-protein	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	4.53378e-38
CP029680.1\|AWR14684.1\|2858529_2858916_+\|gtrA-like-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	1.41026e-22

>CP029680.1|AWR14684.1|2858529_2858916_+|gtrA-like-family-protein
MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHITGFLVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAEIAPFAGLVITIPITFVLSKWILKDSN
>CP029680.1|AWR14683.1|2857119_2858262_-|glycerate-kinase-family-protein
MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIPMADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDLLEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVKFTDVNGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSNPLLGENGATYIYGPQKGADAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVVFDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENYQHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ
>CP029680.1|AWR14682.1|2856400_2857060_-|putative-membrane-protein
MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPERYYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRALLNNDSDKVSNDPKVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKADSKLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDDNGGAN
>CP029680.1|AWR14681.1|2855007_2856219_-|drug-resistance-transporter,-Bcr/CflA-subfamily-protein
MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVIVIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
>CP029680.1|AWR14680.1|2854411_2854885_+|gyrI-like-small-molecule-binding-domain-protein
MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIAKYDVITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQANTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
>CP029680.1|AWR14679.1|2853642_2854299_-|peptidase-C39-family-protein
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
>CP029680.1|AWR14678.1|2852773_2853580_+|phosphoesterase-family-protein
MKIGTIADLHIDRHNKKTSEDYLEALVEIVKYKKLDILLIAGDISNHYQLTHQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPFIVNEEWAIIGHTGWYDYSFAAQRFSLEHLQKGKHYGATWQDKERISWGISDQNLSKIAAEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDIPYSIMGHVHFRKSVMDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI
>CP029680.1|AWR14677.1|2851078_2852488_-|amino-acid-permease-family-protein
MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSMSDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIAMVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGVTAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIGVPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSILVSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKNSKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIFLFFFYKKYKTNAEKLAYEQRQNDSGHFRYDNQ
>CP029680.1|AWR14676.1|2848862_2850941_-|sodium/hydrogen-exchanger-family-protein
MALLEAFLIFIFAVIISSVINNRFPQIPTAFIQIALGVVIFIIPIQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYFIHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGIISFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNNTLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWNTFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVITILIAIAIYACRFVWVYFWYKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKGQAFEYRNDLLFIASFMALISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQHFKNESKKDKNDTNYRPVLNQYYGELLFLLNSEPNNQNTKELKRLEDIAKVIETSTLERLIDKGKATYQDINNYRNIVELTETHRTASFVEKFANFFKMLWLRLKAMKHYKALNKESKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRAQRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYNEIVLSLQSKH
>CP029680.1|AWR14675.1|2846892_2848722_+|amino-acid-permease-family-protein
MFNQFKRLIIGQPKKNRELKDEKISKFKGLAILSSDALSSVAYGPEQILITLSVVGAVATWYTLPIAGAVLILLAALIMSYRQIIYAYPKGGGAYMVSKTNLGEKWGLLAGGSLLVDYILTVAVSISSGADAFVAAFPSLYGHKVLIACLLVLFILILNLRGLTESATVLSYPVYLFIIGLVILIFIGTFRVATGDIQPHMHASVGTAVPGVTLFLLLKAFSSGASSLTGVEAISNAVTNFREPSANNAVKTLIAMGSILAFLLVGIVGLAYVYGIMPQTETTVLSQLAMQIFGDNAAFYFVQATTVMILVLAANTGFTAFPMLAASMSKDKYMPRMFTVRGDRLGYSNSIIILGVLAIILIIVFDGMTEDLIPLYAVGVFIPFTLAQFGMVIKWIHERPKNWLSKLSVNLLGGIVTFIVFMILLITKFSQVWPILIFLPFVVIFFLKINKHYRDIAEQLRSDIDVLNVDVVDRNLAIVPITSITTAVDKSIYYAQMLANNDVIAVHVSFGDEDEKAFQEKWKRHFPDVRLVILHSEYRSIIRPISRFIDKINRKANDQNYMITVVIPEFITKKRWHNLLHNQTSLRMKLYLIYQKNVNVCTIPFKLKK
>CP029680.1|AWR14685.1|2859859_2861623_+|ABC-transporter-family-protein
MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVFKIILMMINNAYTINSIMVYIFIALITYISQVCCFGASTMLSHITAYEILSEIRKKLAQKLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLIDWRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQSQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLNYAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEVNQILSLEELVLSTKFKKPQHYEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFTAIVGASGSGKSTIAKLISRYWDVTSGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAKLAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATAYVDPDNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGNYKKMWDTHMHTKDWGINTGHN
>CP029680.1|AWR14686.1|2861647_2863381_+|recF/RecN/SMC-N-terminal-domain-protein
MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDIVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL
>CP029680.1|AWR14687.1|2863833_2864520_+|dethiobiotin-synthase
MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAVVHQDYVNKNVSASNFLIMNRYTDSYIEKDNQITIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
>CP029680.1|AWR14688.1|2864497_2865856_+|adenosylmethionine-8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEIMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNTFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRKCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>CP029680.1|AWR14689.1|2865857_2866865_+|biotin-synthase
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>CP029680.1|AWR14690.1|2866845_2867958_+|aminotransferase-class-I-and-II-family-protein
MFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLEKYPNQNIPKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>CP029680.1|AWR14691.1|2867968_2868661_+|6-carboxyhexanoate--CoA-ligase-family-protein
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFAAAKIGYHRLFDIKPVNTRYGGRIIFVDDCIDLNHYISFLESTPKQVVYETV
>CP029680.1|AWR14692.1|2868671_2869139_+|queT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLSSVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>CP029680.1|AWR14693.1|2869190_2870168_-|gamma-hemolysin-component-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>CP029680.1|AWR14694.1|2870169_2871117_-|gamma-hemolysin-component-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029680_4	4.1\|363693\|34\|CP029680\|CRISPRCasFinder	363693-363726	34	CP029680.1	1323660-1323693	0	1.0
CP029680_4	4.1\|363693\|34\|CP029680\|CRISPRCasFinder	363693-363726	34	CP029680.1	1723632-1723665	0	1.0
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1710891-1710921	1	0.968
CP029680_4	4.1\|363693\|34\|CP029680\|CRISPRCasFinder	363693-363726	34	CP029680.1	669666-669699	1	0.971
CP029680_5	5.1\|796377\|33\|CP029680\|CRISPRCasFinder	796377-796409	33	CP029680.1	1111919-1111951	1	0.97
CP029680_5	5.1\|796377\|33\|CP029680\|CRISPRCasFinder	796377-796409	33	CP029680.1	1718074-1718106	1	0.97
CP029680_7	7.1\|1723610\|31\|CP029680\|CRISPRCasFinder	1723610-1723640	31	CP029680.1	761922-761952	1	0.968
CP029680_10	10.1\|2859499\|33\|CP029680\|CRISPRCasFinder	2859499-2859531	33	CP029680.1	1674613-1674645	1	0.97
CP029680_10	10.1\|2859499\|33\|CP029680\|CRISPRCasFinder	2859499-2859531	33	CP029680.1	1710831-1710863	1	0.97
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	124962-124992	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	465950-465980	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	781741-781771	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1023530-1023560	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1111963-1111993	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1318062-1318092	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1464556-1464586	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1674617-1674647	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1710835-1710865	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	1891519-1891549	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	2158495-2158525	2	0.935
CP029680_1	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	CP029680.1	2456516-2456546	2	0.935
CP029680_4	4.1\|363693\|34\|CP029680\|CRISPRCasFinder	363693-363726	34	CP029680.1	1107545-1107578	2	0.941
CP029680_4	4.1\|363693\|34\|CP029680\|CRISPRCasFinder	363693-363726	34	CP029680.1	2586167-2586200	2	0.941
CP029680_6	6.1\|1674926\|34\|CP029680\|CRISPRCasFinder	1674926-1674959	34	CP029680.1	1111919-1111952	2	0.941
CP029680_9	9.1\|2784331\|46\|CP029680\|PILER-CR	2784331-2784376	46	CP029680.1	2780681-2780726	2	0.957
CP029680_9	9.2\|2784394\|37\|CP029680\|PILER-CR	2784394-2784430	37	CP029680.1	2780744-2780780	2	0.946
CP029680_10	10.1\|2859499\|33\|CP029680\|CRISPRCasFinder	2859499-2859531	33	CP029680.1	339729-339761	2	0.939
CP029680_10	10.1\|2859499\|33\|CP029680\|CRISPRCasFinder	2859499-2859531	33	CP029680.1	1710887-1710919	2	0.939

1. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 1323660-1323693, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

2. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 1723632-1723665, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

3. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1710891-1710921, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

4. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 669666-669699, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacaaagaatttcgaaaagaaattctacaa	Protospacer
********.*************************

5. spacer 5.1|796377|33|CP029680|CRISPRCasFinder matches to position: 1111919-1111951, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

6. spacer 5.1|796377|33|CP029680|CRISPRCasFinder matches to position: 1718074-1718106, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
***************************.*****

7. spacer 7.1|1723610|31|CP029680|CRISPRCasFinder matches to position: 761922-761952, mismatch: 1, identity: 0.968

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggcaatggaagttggcggggccccaacacag	Protospacer
******* ***********************

8. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 1674613-1674645, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

9. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 1710831-1710863, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

10. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 124962-124992, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

11. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 465950-465980, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

12. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 781741-781771, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

13. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1023530-1023560, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

14. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1111963-1111993, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

15. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1318062-1318092, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

16. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1464556-1464586, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

17. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1674617-1674647, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

18. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1710835-1710865, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

19. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1891519-1891549, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

20. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 2158495-2158525, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

21. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 2456516-2456546, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

22. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 1107545-1107578, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgataagaaattccacaa	Protospacer
******************* *********.****

23. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 2586167-2586200, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaaaagaatttcgaaaagaaattctacaa	Protospacer
****** *.*************************

24. spacer 6.1|1674926|34|CP029680|CRISPRCasFinder matches to position: 1111919-1111952, mismatch: 2, identity: 0.941

atgggccccaacacagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
************* ***************.****

25. spacer 9.1|2784331|46|CP029680|PILER-CR matches to position: 2780681-2780726, mismatch: 2, identity: 0.957

acaaagataaacctaattatcaatttggtggacacaacagtgttga	CRISPR spacer
acaaagataaacctaattatcaattcggtggacacaatagtgttga	Protospacer
*************************.***********.********

26. spacer 9.2|2784394|37|CP029680|PILER-CR matches to position: 2780744-2780780, mismatch: 2, identity: 0.946

ttccaaaagtaagtggtcaaaatgaaggtcaacaaac	CRISPR spacer
ttccaaaagtaagcggccaaaatgaaggtcaacaaac	Protospacer
*************.**.********************

27. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 339729-339761, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaggctggcggaaagtcagcttacaataatg	Protospacer
*** .****************************

28. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 1710887-1710919, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029680_2	2.1\|222190\|34\|CP029680\|CRISPRCasFinder	222190-222223	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP029680_2	2.1\|222190\|34\|CP029680\|CRISPRCasFinder	222190-222223	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
CP029680_3	3.1\|234514\|32\|CP029680\|CRISPRCasFinder	234514-234545	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	41454-41485	9	0.719
CP029680_3	3.1\|234514\|32\|CP029680\|CRISPRCasFinder	234514-234545	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	296489-296520	10	0.688

1. spacer 2.1|222190|34|CP029680|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

2. spacer 2.1|222190|34|CP029680|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

3. spacer 3.1|234514|32|CP029680|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

4. spacer 3.1|234514|32|CP029680|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

358785 : 411569

Staphylococcus_phage(92.86%)

integrase,portal,protease,head,tail,capsid,holin

attL 367629:367646|attR 392126:392143

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR12329.1\|358785_359529_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWR12330.1\|359703_359988_+	10 kDa chaperonin	A0A221S386	uncultured_virus	4.7e-14	46.2
AWR12331.1\|360063_361680_+	chaperonin GroL	A0A240F779	uncultured_virus	3.4e-157	54.7
AWR12332.1\|362219_363527_-	ktr system potassium uptake protein B	NA	NA	NA	NA
AWR12333.1\|363970_365194_-	putative succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AWR12334.1\|365629_366685_+	hypothetical protein	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
AWR12335.1\|366706_367723_+	gamma-hemolysin component B	A0A1X9IGW5	Staphylococcus_phage	6.7e-26	30.2
367629:367646	attL	NA	NA	NA	NA
AWR12336.1\|367960_368785_-	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	8.9e-162	99.6
AWR12337.1\|368841_369879_-\|integrase	integrase	Q38086	Staphylococcus_phage	2.2e-178	99.7
AWR12338.1\|370069_370783_-	pemK-like family protein	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
AWR12339.1\|370861_371044_-	hypothetical protein	A0A0H3U4Z4	Staphylococcus_phage	6.9e-27	96.7
AWR12340.1\|371114_371300_-	hypothetical protein	U5U7D6	Staphylococcus_phage	2.3e-25	100.0
AWR12341.1\|371296_371443_-	hypothetical protein	A0A1X9H032	Staphylococcus_phage	3.3e-19	100.0
AWR12342.1\|371516_372371_-	HIRAN domain protein	A0A1X9H037	Staphylococcus_phage	7.3e-151	100.0
AWR12343.1\|372382_373099_-	helix-turn-helix family protein	A0A1X9H038	Staphylococcus_phage	5.4e-131	100.0
AWR12344.1\|373262_373505_+	cro/C1-type HTH DNA-binding domain protein	A0A1X9H035	Staphylococcus_phage	1.6e-39	100.0
AWR12345.1\|373517_373961_+	hypothetical protein	W5R971	Staphylococcus_phage	1.5e-75	100.0
AWR12346.1\|373975_374116_+	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
AWR12347.1\|374108_374318_-	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
AWR12348.1\|374374_375124_+	phage antirepressor KilAC domain protein	B7T097	Staphylococcus_virus	3.4e-136	99.6
AWR12349.1\|375139_375337_+	putative phi PVL orf 35-like protein	O80075	Staphylococcus_phage	3.5e-24	87.7
AWR12350.1\|375323_375704_-	hypothetical protein	Q9T1Z5	Staphylococcus_phage	1.2e-68	100.0
AWR12351.1\|375758_376082_+	hypothetical protein	A0A075LYF5	Staphylococcus_phage	3.0e-57	100.0
AWR12352.1\|376078_376240_+	hypothetical protein	A0A1P8L6G0	Staphylococcus_phage	1.9e-20	100.0
AWR12353.1\|376334_376637_+	hypothetical protein	A0A1P8L6F8	Staphylococcus_phage	7.0e-48	100.0
AWR12354.1\|376641_376902_+	hypothetical protein	A0A1P8L6F5	Staphylococcus_phage	5.2e-44	100.0
AWR12355.1\|377182_379126_+	hypothetical protein	A0A1P8L6F1	Staphylococcus_phage	0.0e+00	100.0
AWR12356.1\|379127_380048_+	recT family protein	A0A1P8L6F6	Staphylococcus_phage	5.1e-166	100.0
AWR12357.1\|380260_380746_+	beta-lactamase superfamily domain protein	A0A1P8L6F7	Staphylococcus_phage	9.4e-87	100.0
AWR12358.1\|380746_381217_+	single-stranded DNA-binding family protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
AWR12359.1\|381246_382140_+	dnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AWR12360.1\|382146_382365_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AWR12361.1\|382373_382778_+	endodeoxyribonuclease RusA family protein	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
AWR12362.1\|382790_383162_+	PVL ORF-50-like family protein	A0A2I6PDG3	Staphylococcus_phage	1.4e-50	91.1
AWR12363.1\|383161_383419_+	hypothetical protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
AWR12364.1\|383421_383664_+	phage family protein	A0A2H4PQJ3	Staphylococcus_phage	1.2e-39	98.8
AWR12365.1\|383678_383924_+	hypothetical protein	Q8SDV5	Staphylococcus_phage	1.7e-36	95.1
AWR12366.1\|383920_384457_+	dUTPase family protein	Q9MBR0	Staphylococcus_prophage	1.6e-95	100.0
AWR12367.1\|384493_384739_+	putative membrane protein	A0A2I6PDW7	Staphylococcus_phage	2.5e-35	98.8
AWR12368.1\|384735_384942_+	hypothetical protein	A0A2I6PEA2	Staphylococcus_phage	1.1e-17	94.1
AWR12369.1\|384938_385088_+	transcriptional activator RinB family protein	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AWR12370.1\|385087_385288_+	hypothetical protein	D2JLD9	Staphylococcus_phage	5.3e-28	98.5
AWR12371.1\|385315_385732_+	phage transcriptional regulator, RinA family protein	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AWR12372.1\|385963_386263_+	HNH endonuclease family protein	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
AWR12373.1\|386393_386738_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AWR12374.1\|386734_388396_+	phage Terminase family protein	A0A075M4D3	Staphylococcus_phage	0.0e+00	100.0
AWR12375.1\|388411_389575_+\|portal	phage portal protein, HK97 family	A0A1W6JPQ9	Staphylococcus_phage	1.8e-216	100.0
AWR12376.1\|389558_390296_+\|protease	clp protease family protein	A0A1W6JPK0	Staphylococcus_phage	1.8e-129	100.0
AWR12377.1\|390318_391464_+\|capsid	phage major capsid protein, HK97 family	A0A1W6JPL4	Staphylococcus_phage	7.3e-215	99.7
AWR12378.1\|391483_391768_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	5.2e-45	97.9
AWR12379.1\|391757_392042_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AWR12380.1\|392025_392388_+\|head,tail	phage head-tail joining family protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
392126:392143	attR	NA	NA	NA	NA
AWR12381.1\|392384_392789_+	hypothetical protein	A0A1W6JPJ1	Staphylococcus_phage	2.5e-69	100.0
AWR12382.1\|392785_393193_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
AWR12383.1\|393193_393838_+\|tail	phage major tail, phi13 family protein	G4KNQ7	Staphylococcus_phage	1.9e-119	99.1
AWR12384.1\|393963_394104_+	bacterial Ig-like domain family protein	A0A2I6PDK6	Staphylococcus_phage	2.5e-16	100.0
AWR12385.1\|394153_394504_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
AWR12386.1\|394554_394692_+	hypothetical protein	A0A2I6PDX7	Staphylococcus_phage	3.4e-18	100.0
AWR12387.1\|394748_399281_+\|tail	phage tail tape measure protein, TP901 family, core region	A0EX03	Staphylococcus_phage	0.0e+00	98.9
AWR12388.1\|399277_400762_+\|tail	phage tail family protein	A0A2I6PDJ0	Staphylococcus_phage	4.5e-297	99.8
AWR12389.1\|400777_404563_+	phage minor structural, N-terminal region domain protein	Q6R866	Staphylococcus_virus	0.0e+00	98.3
AWR12390.1\|404552_404705_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AWR12391.1\|404751_405039_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AWR12392.1\|405162_405393_+	hypothetical protein	D2JLG2	Staphylococcus_phage	1.2e-31	100.0
AWR12393.1\|405584_405719_+	putative membrane protein	D2JLG3	Staphylococcus_phage	9.3e-13	100.0
AWR12394.1\|405930_406185_+\|holin	holin, phage phi LC3 family	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AWR12395.1\|406196_406952_+	CHAP domain protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AWR12396.1\|407142_407634_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AWR12397.1\|408322_408619_+	bacterial SH3 domain protein	A0A1P8L6B4	Staphylococcus_phage	1.3e-51	100.0
AWR12398.1\|408713_409163_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AWR12399.1\|409846_410197_+	complement inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AWR12400.1\|410249_410441_-	putative membrane protein	M9NS66	Staphylococcus_phage	1.7e-23	100.0
AWR12401.1\|411371_411569_-	phospholipase C domain protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0

DBSCAN-SWA_2

500524 : 616981

111

Staphylococcus_phage(86.89%)

tRNA,transposase,protease,integrase

attL 547520:547536|attR 582730:582746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR12482.1\|500524_501844_-\|transposase	transposase family protein	NA	NA	NA	NA
AWR12483.1\|502427_503489_+	phosphotransferase system, EIIC family protein	NA	NA	NA	NA
AWR12484.1\|503746_505204_+	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA
AWR12485.1\|505196_505919_+	recF/RecN/SMC N terminal domain protein	G9BWD6	Planktothrix_phage	1.3e-36	42.7
AWR12486.1\|506069_507197_+	epoxyqueuosine reductase	NA	NA	NA	NA
AWR12487.1\|507201_507672_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
AWR12488.1\|507830_508430_+	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA
AWR12489.1\|508454_508607_+	hypothetical protein	NA	NA	NA	NA
AWR12490.1\|509154_509550_+	putative membrane protein	NA	NA	NA	NA
AWR12491.1\|509745_511131_+	fumarate hydratase, class II	NA	NA	NA	NA
AWR12492.1\|511583_512405_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA
AWR12493.1\|512567_513680_+	histidine kinase family protein	NA	NA	NA	NA
AWR12494.1\|513701_514325_+	response regulator	NA	NA	NA	NA
AWR12495.1\|514680_515145_+	helix-turn-helix family protein	NA	NA	NA	NA
AWR12496.1\|515323_516448_+	hypothetical protein	NA	NA	NA	NA
AWR12497.1\|516516_516861_+	hypothetical protein	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AWR12498.1\|517788_518985_+	calcineurin-like phosphoesterase superfamily domain protein	NA	NA	NA	NA
AWR12499.1\|518974_521911_+	AAA domain protein	NA	NA	NA	NA
AWR12500.1\|521907_522849_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AWR12501.1\|522969_523932_-	foldase protein PrsA	NA	NA	NA	NA
AWR12502.1\|524136_524694_-	hypothetical protein	NA	NA	NA	NA
AWR12503.1\|525428_525794_-	hypothetical protein	NA	NA	NA	NA
AWR12504.1\|525935_526358_-	protein hit	NA	NA	NA	NA
AWR12505.1\|526491_527232_+	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AWR12506.1\|527224_528448_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA
AWR12507.1\|528571_529075_-	signal transduction protein TRAP	NA	NA	NA	NA
AWR12508.1\|529337_530375_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AWR12509.1\|530432_531356_+	ferrochelatase	NA	NA	NA	NA
AWR12510.1\|531379_532780_+	protoporphyrinogen oxidase	NA	NA	NA	NA
AWR12511.1\|533102_533657_+	serine hydrolase family protein	NA	NA	NA	NA
AWR12512.1\|535034_535799_+	enterotoxin type D	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
AWR12513.1\|536079_536799_+	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	2.3e-25	35.8
AWR12514.1\|536833_537562_+	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AWR12515.1\|537769_538117_+	enterotoxin type B	A0A097PAT7	Streptococcus_pyogenes_phage	3.0e-10	37.9
AWR12516.1\|538091_538487_+	enterotoxin type C-1	A0A097PAT7	Streptococcus_pyogenes_phage	1.5e-26	50.4
AWR12517.1\|538525_539281_+	enterotoxin H	A0A075M4C7	Staphylococcus_phage	6.0e-40	41.4
AWR12518.1\|539563_540340_+	enterotoxin type G	NA	NA	NA	NA
AWR12519.1\|540891_541668_-	hypothetical protein	NA	NA	NA	NA
AWR12520.1\|541688_541925_-	hypothetical protein	NA	NA	NA	NA
AWR12521.1\|542002_542497_-	hypothetical protein	NA	NA	NA	NA
AWR12522.1\|543330_544119_-	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	3.6e-144	98.5
AWR12523.1\|545482_546418_+	leucotoxin LukEv	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AWR12524.1\|546419_547403_+	leucotoxin LukDv	A0A2H4PQH7	Staphylococcus_phage	1.8e-185	99.4
547520:547536	attL	NA	NA	NA	NA
AWR12525.1\|547660_547786_+	hypothetical protein	NA	NA	NA	NA
AWR12526.1\|547772_548564_-	hypothetical protein	NA	NA	NA	NA
AWR12527.1\|548568_549042_-	hypothetical protein	NA	NA	NA	NA
AWR12528.1\|549243_549516_+	putative membrane protein	A0A2H4PQH0	Staphylococcus_phage	3.1e-31	83.5
AWR12529.1\|549719_549839_-	hypothetical protein	NA	NA	NA	NA
AWR12530.1\|549988_550570_-	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
AWR12531.1\|551533_552241_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AWR12532.1\|552365_553088_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AWR12533.1\|553145_553865_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AWR12534.1\|553985_554705_+\|protease	serine protease SplF	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AWR12535.1\|554862_555030_+\|protease	serine protease SplF domain protein	A0A2H4PQP1	Staphylococcus_phage	3.4e-20	98.2
AWR12536.1\|555030_555582_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	3.4e-101	100.0
AWR12537.1\|555942_557499_+	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
AWR12538.1\|557491_558721_+	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	4.0e-134	64.7
AWR12539.1\|559117_559249_-	hypothetical protein	NA	NA	NA	NA
AWR12540.1\|559262_559673_+\|transposase	putative transposase	NA	NA	NA	NA
AWR12541.1\|560472_560682_+	putative iSSdy1 transposon protein	A0A2H4PQV6	Staphylococcus_phage	4.7e-27	91.2
AWR12542.1\|560703_561273_+\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.3e-55	56.8
AWR12543.1\|561470_562043_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AWR12544.1\|562143_562485_-	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AWR12545.1\|562525_563152_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.1e-74	79.8
AWR12546.1\|563226_564222_-	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AWR12547.1\|564302_564917_-	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	1.1e-42	93.1
AWR12548.1\|565229_565712_+	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	3.8e-80	99.3
AWR12549.1\|565870_567349_+	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.8e-283	97.6
AWR12550.1\|567353_568355_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AWR12551.1\|568351_568609_-	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AWR12552.1\|568668_569148_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AWR12553.1\|569128_569899_+	prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	1.5e-142	98.8
AWR12554.1\|570276_571869_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AWR12555.1\|572240_573437_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AWR12556.1\|573558_574467_+	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AWR12557.1\|574678_575512_+	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AWR12558.1\|575574_576258_-\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.2e-124	96.5
AWR12559.1\|576696_576861_-\|transposase	putative transposase	A0A146ICT8	Staphylococcus_phage	2.9e-24	98.1
AWR12560.1\|577508_577862_-	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AWR12561.1\|577858_578224_-	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AWR12562.1\|578479_578782_-	putative membrane protein	NA	NA	NA	NA
AWR12563.1\|579041_579755_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AWR12564.1\|580194_580830_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWR12565.1\|581125_581569_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AWR12566.1\|581555_581699_-	hypothetical protein	NA	NA	NA	NA
AWR12567.1\|582111_582582_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AWR12568.1\|582780_583005_+	hypothetical protein	NA	NA	NA	NA
582730:582746	attR	NA	NA	NA	NA
AWR12569.1\|583280_584135_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWR12570.1\|584221_585514_-	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AWR12571.1\|586350_587853_+	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AWR12572.1\|588333_589377_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
AWR12573.1\|589383_590016_+	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AWR12574.1\|590026_591208_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AWR12575.1\|591220_591685_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AWR12576.1\|591806_592808_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AWR12577.1\|593040_593868_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWR12578.1\|594439_594841_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWR12579.1\|594963_595527_-	methyltransferase domain protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AWR12580.1\|595523_596477_-	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWR12581.1\|596586_597768_+	sugar (and other) transporter family protein	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AWR12582.1\|598058_600473_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AWR12583.1\|600494_600806_+	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AWR12584.1\|601131_607692_+	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	6.1e-306	98.3
AWR12585.1\|607808_609077_-	flavo, HI0933 family protein	A0A2H4PQX1	Staphylococcus_phage	9.1e-57	99.1
AWR12586.1\|609483_611145_+	matE family protein	NA	NA	NA	NA
AWR12587.1\|611141_611837_+	pseudouridine synthase family protein	NA	NA	NA	NA
AWR12588.1\|611853_612276_+	hypothetical protein	NA	NA	NA	NA
AWR12589.1\|612719_614129_+	dipeptidase family protein	NA	NA	NA	NA
AWR12590.1\|614132_614981_+	D-amino-acid transaminase	NA	NA	NA	NA
AWR12591.1\|615530_616322_+	phosphotransferase enzyme family protein	NA	NA	NA	NA
AWR12592.1\|616336_616981_+\|tRNA	tRNA (guanine-N(7)-)-methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

737721 : 746764

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR12696.1\|737721_738726_+	holliday junction DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AWR12697.1\|738727_739753_+\|tRNA	tRNA ribosyltransferase-isomerase	NA	NA	NA	NA
AWR12698.1\|739775_740915_+\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AWR12699.1\|740933_741194_+	preprotein translocase, YajC subunit	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AWR12700.1\|741468_743748_+	protein-export membrane protein SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AWR12701.1\|743950_746224_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
AWR12702.1\|746245_746764_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_4

881722 : 969281

104

Staphylococcus_phage(82.05%)

integrase,portal,protease,tRNA,head,terminase,capsid,tail,holin

attL 887301:887329|attR 932977:933005

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR12845.1\|881722_882448_+	transcriptional regulatory protein SrrA	W8CYM9	Bacillus_phage	3.5e-45	43.0
AWR12846.1\|882485_884180_+	sensor protein SrrB	A0A1V0SGX0	Hokovirus	2.2e-21	33.2
AWR12847.1\|884237_884381_+	hypothetical protein	NA	NA	NA	NA
AWR12848.1\|884483_885350_+	hypothetical protein	NA	NA	NA	NA
AWR12849.1\|885342_887370_+	hypothetical protein	B5WZK7	Staphylococcus_phage	1.6e-116	100.0
887301:887329	attL	NA	NA	NA	NA
AWR12850.1\|887412_888618_-\|integrase	phage integrase family protein	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
AWR12851.1\|888743_889358_+	hypothetical protein	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
AWR12852.1\|889354_889480_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	7.3e-12	97.6
AWR12853.1\|889536_889719_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
AWR12854.1\|889788_890520_-	helix-turn-helix domain protein	S4SVC5	Staphylococcus_phage	1.3e-132	99.2
AWR12855.1\|890671_890884_+	helix-turn-helix family protein	A7TWF1	Staphylococcus_phage	1.6e-30	100.0
AWR12856.1\|890931_891375_+	hypothetical protein	A7TWF2	Staphylococcus_phage	8.9e-76	100.0
AWR12857.1\|891389_891539_+	hypothetical protein	D2JGJ0	Staphylococcus_phage	1.4e-20	100.0
AWR12858.1\|891579_891792_-	putative uracil-DNA glycosylase	D2JGJ1	Staphylococcus_phage	7.6e-33	100.0
AWR12859.1\|891861_892059_+	hypothetical protein	A7TWF5	Staphylococcus_phage	4.6e-24	100.0
AWR12860.1\|892706_893072_-	putative phage protein	A0A2I6PF07	Staphylococcus_phage	2.4e-63	100.0
AWR12861.1\|893126_893342_+	hypothetical protein	A0A2I6PF01	Staphylococcus_phage	1.9e-31	100.0
AWR12862.1\|893366_893630_+	homeo-like domain protein	A7TWG0	Staphylococcus_phage	5.7e-46	100.0
AWR12863.1\|893882_894206_+	hypothetical protein	A0A2I6PE70	Staphylococcus_phage	6.5e-52	100.0
AWR12864.1\|894220_894583_+	hypothetical protein	A0A2I6PEM7	Staphylococcus_phage	1.9e-55	99.2
AWR12865.1\|894579_895746_+	hypothetical protein	R4WAL0	Staphylococcus_phage	1.5e-218	98.7
AWR12866.1\|895771_896329_+	hypothetical protein	A0A2K9VBT2	Staphylococcus_phage	1.8e-97	100.0
AWR12867.1\|896388_898350_+	DNA polymerase A family protein	A0A2K9VBT3	Staphylococcus_phage	0.0e+00	99.7
AWR12868.1\|898362_898548_+	hypothetical protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AWR12869.1\|898547_898949_+	PVL ORF-50-like family protein	A0A2I6PEL5	Staphylococcus_phage	1.8e-67	98.5
AWR12870.1\|898948_899203_+	hypothetical protein	A7TWG9	Staphylococcus_phage	2.2e-42	100.0
AWR12871.1\|899208_899451_+	phage family protein	A0A2K9VBX5	Staphylococcus_phage	1.1e-40	100.0
AWR12872.1\|899464_899671_+	hypothetical protein	A0A2K9VBT9	Staphylococcus_phage	3.0e-34	100.0
AWR12873.1\|899673_900078_+	hypothetical protein	A0A0E3T8H9	Staphylococcus_phage	1.0e-70	98.5
AWR12874.1\|900077_900422_+	yopX family protein	D2JGL4	Staphylococcus_phage	1.7e-58	100.0
AWR12875.1\|900418_900727_+	hypothetical protein	Q4ZBK6	Staphylococcus_phage	3.1e-51	99.0
AWR12876.1\|900719_900974_+	hypothetical protein	A7TWH5	Staphylococcus_phage	6.1e-37	92.9
AWR12877.1\|900960_901131_+	hypothetical protein	A0A1W6JQ22	Staphylococcus_phage	5.7e-23	100.0
AWR12878.1\|901123_901660_+	dUTPase family protein	A0A1W6JPM9	Staphylococcus_phage	4.6e-95	99.4
AWR12879.1\|901696_901903_+	hypothetical protein	A7TWH8	Staphylococcus_phage	4.9e-29	97.1
AWR12880.1\|901899_902103_+	hypothetical protein	A7TWH9	Staphylococcus_phage	8.8e-31	100.0
AWR12881.1\|902095_902332_+	hypothetical protein	A7TWI0	Staphylococcus_phage	3.6e-36	100.0
AWR12882.1\|902324_902711_+	hypothetical protein	A7TWI1	Staphylococcus_phage	1.0e-64	100.0
AWR12883.1\|902707_902860_+	transcriptional activator RinB family protein	A7TWI2	Staphylococcus_phage	1.3e-18	98.0
AWR12884.1\|902927_903128_+	hypothetical protein	A0A2I6PF41	Staphylococcus_phage	2.9e-26	100.0
AWR12885.1\|903180_905628_+	virulence-associated E family protein	M1RZC5	Staphylococcus_phage	0.0e+00	99.5
AWR12886.1\|905968_906259_+	VRR-NUC domain protein	U5U7A3	Staphylococcus_phage	4.9e-51	100.0
AWR12887.1\|906248_907607_+	type III restriction enzyme, res subunit	A0A2K9VBW3	Staphylococcus_phage	4.3e-262	100.0
AWR12888.1\|907619_908057_+	phage transcriptional regulator, RinA family protein	B7T0I6	Staphylococcus_virus	6.1e-77	100.0
AWR12889.1\|908213_908534_+	HNH endonuclease family protein	A0A2K9VBV6	Staphylococcus_phage	1.1e-56	99.1
AWR12890.1\|908658_908964_+\|terminase	phage terminase, small subunit	U5U414	Staphylococcus_phage	2.9e-49	100.0
AWR12891.1\|908953_910645_+	phage Terminase family protein	A0A2K9VBQ1	Staphylococcus_phage	0.0e+00	100.0
AWR12892.1\|910649_911888_+\|portal	phage portal protein, HK97 family	A0A2K9VBP0	Staphylococcus_phage	2.0e-234	99.5
AWR12893.1\|911871_912645_+\|protease	clp protease family protein	M1TAZ4	Staphylococcus_phage	9.2e-137	100.0
AWR12894.1\|912656_913820_+\|capsid	phage major capsid protein, HK97 family	A0A2I6PDD7	Staphylococcus_phage	9.4e-218	100.0
AWR12895.1\|913888_914167_+\|head,tail	phage gp6-like head-tail connector family protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AWR12896.1\|914178_914511_+	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	8.2e-58	99.1
AWR12897.1\|914507_914909_+	hypothetical protein	A0A2I6PDD3	Staphylococcus_phage	6.2e-68	100.0
AWR12898.1\|914909_915305_+	hypothetical protein	A0A2I6PDD8	Staphylococcus_phage	2.6e-66	100.0
AWR12899.1\|915339_915981_+\|tail	phage major tail, phi13 family protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AWR12900.1\|916072_916528_+	bacterial Ig-like domain family protein	A0A2I6PF45	Staphylococcus_phage	1.3e-77	100.0
AWR12901.1\|916585_916936_+	hypothetical protein	A0A2I6PDE6	Staphylococcus_phage	1.1e-55	100.0
AWR12902.1\|916977_917136_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AWR12903.1\|917149_923350_+\|tail	phage tail tape measure protein, TP901 family, core region	A0A2I6PE73	Staphylococcus_phage	0.0e+00	99.3
AWR12904.1\|923349_924174_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AWR12905.1\|924182_925766_+\|tail	prophage endopeptidase tail family protein	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AWR12906.1\|925765_926056_+	putative phage protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AWR12907.1\|926071_927982_+	putative minor structural protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
AWR12908.1\|927981_929448_+	hypothetical protein	A0A2I6PES7	Staphylococcus_phage	5.8e-273	99.8
AWR12909.1\|929447_929837_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AWR12910.1\|929829_929994_+	hypothetical protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AWR12911.1\|930039_930339_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AWR12912.1\|930475_930778_+\|holin	holin, SPP1 family	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AWR12913.1\|930788_932243_+	N-acetylmuramoyl-L-alanine amidase family protein	U5U7D2	Staphylococcus_phage	2.6e-289	100.0
AWR12914.1\|932965_933181_+	hypothetical protein	A0ZS61	Staphylococcus_virus	2.0e-25	100.0
932977:933005	attR	NA	NA	NA	NA
AWR12915.1\|933270_934176_+	hypothetical protein	NA	NA	NA	NA
AWR12916.1\|934233_935130_+	hypothetical protein	NA	NA	NA	NA
AWR12917.1\|935205_935460_+	hypothetical protein	NA	NA	NA	NA
AWR12918.1\|935461_935584_-	putative membrane protein	NA	NA	NA	NA
AWR12919.1\|935600_936557_+	hypothetical protein	NA	NA	NA	NA
AWR12920.1\|936958_937504_+	riboflavin transporter RibU	NA	NA	NA	NA
AWR12921.1\|937609_937858_-	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
AWR12922.1\|937965_938919_+	hypothetical protein	NA	NA	NA	NA
AWR12923.1\|938908_940288_+	ATP-dependent DNA helicase, RecQ family protein	A0A2P1EM61	Moumouvirus	1.4e-55	33.6
AWR12924.1\|940440_941901_+	elastin-binding protein EbpS	NA	NA	NA	NA
AWR12925.1\|942302_943289_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	NA	NA	NA
AWR12926.1\|943403_944372_-	asparaginase family protein	NA	NA	NA	NA
AWR12927.1\|944448_945108_+	cytidylate kinase	NA	NA	NA	NA
AWR12928.1\|945819_946995_+	30S ribosomal protein S1	NA	NA	NA	NA
AWR12929.1\|947216_948527_+	GTP-binding protein Era	NA	NA	NA	NA
AWR12930.1\|948543_949542_+	NAD binding domain of 6-phosphogluconate dehydrogenase family protein	NA	NA	NA	NA
AWR12931.1\|949712_949985_+	DNA-binding protein HU	A7KV42	Bacillus_phage	4.2e-28	73.3
AWR12932.1\|950415_950988_+	heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 family protein	NA	NA	NA	NA
AWR12933.1\|950990_951716_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA
AWR12934.1\|951717_952677_+	heptaprenyl diphosphate synthase component 2	A0A1V0SE37	Indivirus	1.3e-10	24.4
AWR12935.1\|952768_953218_+	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
AWR12936.1\|954012_955179_+	chorismate synthase	A0A291AU41	Pandoravirus	5.8e-34	31.8
AWR12937.1\|955204_956269_+	3-dehydroquinate synthase	NA	NA	NA	NA
AWR12938.1\|956278_957577_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AWR12939.1\|957583_958828_+	TPR repeat family protein	NA	NA	NA	NA
AWR12940.1\|958841_959417_+	hypothetical protein	G3MAV7	Bacillus_virus	2.1e-08	27.2
AWR12941.1\|959406_959994_+	hypothetical protein	NA	NA	NA	NA
AWR12942.1\|960047_960746_+	neutral zinc metallopeptidase family protein	NA	NA	NA	NA
AWR12943.1\|961081_961399_+	mazG nucleotide pyrophosphohydrolase domain protein	NA	NA	NA	NA
AWR12944.1\|961672_962785_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
AWR12945.1\|962789_963992_+\|head	poly A polymerase head domain protein	H7BUW3	unidentified_phage	4.2e-35	43.3
AWR12946.1\|963978_964950_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
AWR12947.1\|964973_967667_+	hypothetical protein	A0A1X9I5C8	Streptococcus_phage	8.2e-47	34.4
AWR12948.1\|967988_969281_+\|tRNA	asparagine--tRNA ligase	M1PB22	Moumouvirus	8.7e-55	31.3

DBSCAN-SWA_5

1320373 : 1402862

103

Staphylococcus_phage(82.61%)

portal,tRNA,head,tail,capsid,terminase,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR13241.1\|1320373_1321693_-\|transposase	transposase family protein	NA	NA	NA	NA
AWR13242.1\|1322211_1322445_+	hypothetical protein	NA	NA	NA	NA
AWR13243.1\|1323066_1323252_+	putative membrane protein	NA	NA	NA	NA
AWR13244.1\|1323458_1323656_-	hypothetical protein	NA	NA	NA	NA
AWR13245.1\|1324017_1324368_-	complement inhibitor	NA	NA	NA	NA
AWR13246.1\|1324517_1325015_-	fibrinogen-binding protein	NA	NA	NA	NA
AWR13247.1\|1325274_1325781_-	putative membrane protein	NA	NA	NA	NA
AWR13248.1\|1326450_1326852_+	FPRL1 inhibitory protein	NA	NA	NA	NA
AWR13249.1\|1326942_1327059_-	putative membrane protein	NA	NA	NA	NA
AWR13250.1\|1327220_1327550_-	fibrinogen-binding protein	NA	NA	NA	NA
AWR13251.1\|1327743_1327884_-	hypothetical protein	NA	NA	NA	NA
AWR13252.1\|1328038_1328542_-	phosphodiesterase, MJ0936 family protein	NA	NA	NA	NA
AWR13253.1\|1328534_1329122_-	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	NA	NA	NA	NA
AWR13254.1\|1329133_1329934_-	glutamate racemase	NA	NA	NA	NA
AWR13255.1\|1330169_1330985_-	succinate dehydrogenase and fumarate reductase iron-sulfur family protein	NA	NA	NA	NA
AWR13256.1\|1330984_1332751_-	succinate dehydrogenase/fumarate reductase, flavoprotein subunit	NA	NA	NA	NA
AWR13257.1\|1332802_1333417_-	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
AWR13258.1\|1333740_1335522_-	excinuclease ABC subunit C	NA	NA	NA	NA
AWR13259.1\|1335845_1336160_-	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.6e-25	46.6
AWR13260.1\|1336332_1338681_-	mutS2 protein	F2QAF8	Phaeocystis_pouchetii_virus	3.2e-15	25.1
AWR13261.1\|1338690_1340403_-	PHP domain protein	A0A2H4UV14	Bodo_saltans_virus	6.8e-15	24.0
AWR13262.1\|1340475_1340997_-	colicin V production family protein	NA	NA	NA	NA
AWR13263.1\|1340997_1341264_-	cell division ZapA family protein	NA	NA	NA	NA
AWR13264.1\|1341633_1342572_+	ribonuclease HIII	NA	NA	NA	NA
AWR13265.1\|1343003_1345406_-\|tRNA	phenylalanine--tRNA ligase, beta subunit	NA	NA	NA	NA
AWR13266.1\|1345405_1346464_-\|tRNA	phenylalanine--tRNA ligase, alpha subunit	A0A2I2L4E3	Orpheovirus	1.9e-31	35.5
AWR13267.1\|1346843_1347584_-	RNA 2'-O ribose methyltransferase substrate binding family protein	NA	NA	NA	NA
AWR13268.1\|1347967_1348291_-	antibiotic biosynthesis monooxygenase family protein	NA	NA	NA	NA
AWR13269.1\|1348309_1349044_-	sortase, SrtB family	NA	NA	NA	NA
AWR13270.1\|1349105_1350074_-	fecCD transport family protein	NA	NA	NA	NA
AWR13271.1\|1350083_1350830_-	heme ABC transporter, heme-binding protein isdE	NA	NA	NA	NA
AWR13272.1\|1350958_1352035_-	putative iron-regulated protein	NA	NA	NA	NA
AWR13273.1\|1352034_1352718_-	heme uptake protein IsdC	NA	NA	NA	NA
AWR13274.1\|1352926_1353979_+	iron-regulated surface determinant protein A	NA	NA	NA	NA
AWR13275.1\|1354181_1356119_+	heme uptake protein IsdB	NA	NA	NA	NA
AWR13276.1\|1356529_1356715_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AWR13277.1\|1356897_1357026_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
AWR13278.1\|1357424_1357982_+	putative penicillin binding protein	A0A0F6N4L1	Staphylococcus_phage	7.4e-96	100.0
AWR13279.1\|1358041_1359454_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A0F6N3N1	Staphylococcus_phage	5.8e-286	100.0
AWR13280.1\|1359440_1359716_-\|holin	holin, SPP1 family	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
AWR13281.1\|1359771_1360167_-	hypothetical protein	A1KXB6	Staphylococcus_virus	1.6e-68	100.0
AWR13282.1\|1360172_1361411_-	hypothetical protein	A0A0F6N3G7	Staphylococcus_phage	1.6e-210	100.0
AWR13283.1\|1361423_1363316_-	CHAP domain protein	B7T0E8	Staphylococcus_virus	0.0e+00	95.3
AWR13284.1\|1363442_1363850_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.5e-26	94.3
AWR13285.1\|1363895_1364051_-	hypothetical protein	M9QX31	Staphylococcus_phage	9.1e-20	90.2
AWR13286.1\|1364043_1364430_-	hypothetical protein	W5R9M2	Staphylococcus_phage	4.1e-45	86.5
AWR13287.1\|1364429_1366253_-	hypothetical protein	S4V7L3	Staphylococcus_phage	0.0e+00	100.0
AWR13288.1\|1366252_1368163_-	putative minor structural protein	S4V9M9	Staphylococcus_phage	0.0e+00	99.8
AWR13289.1\|1368177_1370079_-\|tail	prophage endopeptidase tail family protein	B7T0E2	Staphylococcus_virus	0.0e+00	98.1
AWR13290.1\|1370087_1371035_-\|tail	phage tail family protein	Q8SDT6	Staphylococcus_phage	6.1e-183	99.7
AWR13291.1\|1371047_1374512_-	putative membrane protein	Q4ZDL9	Staphylococcus_virus	2.3e-267	100.0
AWR13292.1\|1374528_1374873_-	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AWR13293.1\|1374902_1375268_-	phage family protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
AWR13294.1\|1375329_1375911_-\|tail	phage major tail protein, TP901-1 family	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
AWR13295.1\|1375929_1376313_-	hypothetical protein	E0Y3L5	Staphylococcus_virus	3.8e-67	98.4
AWR13296.1\|1376324_1376672_-	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
AWR13297.1\|1376970_1377303_-\|head,tail	phage gp6-like head-tail connector family protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AWR13298.1\|1377311_1377599_-	hypothetical protein	S4V6D9	Staphylococcus_phage	1.4e-45	98.9
AWR13299.1\|1377620_1378595_-\|capsid	phage major capsid protein, HK97 family	E0Y3L0	Staphylococcus_virus	2.2e-183	100.0
AWR13300.1\|1378608_1379229_-	hypothetical protein	S4V984	Staphylococcus_phage	1.7e-69	98.5
AWR13301.1\|1379337_1379508_-	hypothetical protein	A0A0F6N3E9	Staphylococcus_phage	1.5e-23	100.0
AWR13302.1\|1379580_1380576_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	A0A0F6N3F1	Staphylococcus_phage	2.0e-184	100.0
AWR13303.1\|1380582_1382121_-\|portal	phage portal protein, SPP1 family	S4V6D8	Staphylococcus_phage	4.5e-292	99.8
AWR13304.1\|1382131_1383409_-\|terminase	phage terminase, large subunit, PBSX family	S4V685	Staphylococcus_phage	1.3e-249	100.0
AWR13305.1\|1383395_1383554_-\|terminase	putative small terminase	I1W650	Staphylococcus_phage	1.7e-21	98.1
AWR13306.1\|1383606_1383837_-\|terminase	terminase small subunit	Q8SDV0	Staphylococcus_phage	3.1e-32	100.0
AWR13307.1\|1384023_1384446_-	phage transcriptional regulator, RinA family protein	S4V7K2	Staphylococcus_phage	1.6e-74	100.0
AWR13308.1\|1384469_1384616_-	hypothetical protein	S4V9L4	Staphylococcus_phage	1.7e-15	100.0
AWR13309.1\|1384616_1384790_-	transcriptional activator RinB family protein	Q4ZBK0	Staphylococcus_phage	1.4e-21	98.2
AWR13310.1\|1384786_1385173_-	hypothetical protein	A0A0N9BB01	Staphylococcus_phage	3.7e-62	96.9
AWR13311.1\|1385169_1385376_-	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
AWR13312.1\|1385372_1385618_-	putative membrane protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
AWR13313.1\|1385654_1386161_-	dUTPase family protein	M9NS45	Staphylococcus_phage	5.9e-92	100.0
AWR13314.1\|1386175_1386337_-	hypothetical protein	W5R9K6	Staphylococcus_phage	1.4e-23	100.0
AWR13315.1\|1386337_1386595_-	hypothetical protein	A0A2I6PDX3	Staphylococcus_phage	1.2e-40	94.1
AWR13316.1\|1386783_1387035_-	hypothetical protein	E0Y3Q8	Staphylococcus_virus	7.1e-38	94.0
AWR13317.1\|1387049_1387292_-	phage family protein	A0A2H4PQJ3	Staphylococcus_phage	1.2e-39	98.8
AWR13318.1\|1387294_1387552_-	hypothetical protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
AWR13319.1\|1387551_1387923_-	PVL ORF-50-like family protein	A0A2I6PDG3	Staphylococcus_phage	1.4e-50	91.1
AWR13320.1\|1387935_1388340_-	endodeoxyribonuclease RusA family protein	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
AWR13321.1\|1388348_1388567_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
AWR13322.1\|1388573_1389140_-	dnaD domain protein	S4V6D4	Staphylococcus_phage	3.1e-73	93.1
AWR13323.1\|1389487_1389958_-	single-stranded DNA-binding family protein	A0A0E3T9H6	Staphylococcus_phage	6.3e-80	98.7
AWR13324.1\|1389958_1390444_-	beta-lactamase superfamily domain protein	A0A1W6JPL3	Staphylococcus_phage	3.6e-86	99.4
AWR13325.1\|1390656_1391577_-	recombinase, phage RecT family protein	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AWR13326.1\|1391578_1393522_-	hypothetical protein	I1W619	Staphylococcus_phage	0.0e+00	98.6
AWR13327.1\|1393802_1394063_-	hypothetical protein	A0A059T5A3	Staphylococcus_phage	1.2e-43	100.0
AWR13328.1\|1394156_1394477_-	hypothetical protein	S4V968	Staphylococcus_phage	4.8e-55	100.0
AWR13329.1\|1394477_1394645_-	hypothetical protein	S4V7J2	Staphylococcus_phage	9.5e-23	100.0
AWR13330.1\|1394637_1394775_-	hypothetical protein	S4SX85	Staphylococcus_phage	3.2e-16	100.0
AWR13331.1\|1394824_1395055_+	hypothetical protein	R4IG40	Staphylococcus_phage	2.3e-35	100.0
AWR13332.1\|1395029_1395206_-	hypothetical protein	S4SVC9	Staphylococcus_phage	9.7e-26	100.0
AWR13333.1\|1395258_1395453_-	hypothetical protein	E9LT75	Staphylococcus_phage	1.2e-29	100.0
AWR13334.1\|1395469_1396258_-	phage antirepressor KilAC domain protein	A0EWP1	Staphylococcus_virus	9.4e-145	99.6
AWR13335.1\|1396414_1396723_-	hypothetical protein	S4V9P0	Staphylococcus_phage	1.3e-49	100.0
AWR13336.1\|1396737_1396956_-	helix-turn-helix family protein	Q8SDX1	Staphylococcus_phage	2.9e-35	100.0
AWR13337.1\|1397097_1397817_+	helix-turn-helix family protein	Q8SDX2	Staphylococcus_phage	9.8e-133	100.0
AWR13338.1\|1397852_1398533_+	pemK-like family protein	A0A2H4PQQ5	Staphylococcus_phage	5.1e-123	100.0
AWR13339.1\|1398739_1400125_+	resolvase, N terminal domain protein	I1W625	Staphylococcus_phage	5.5e-265	99.8
AWR13340.1\|1400241_1400415_-	ribosomal protein L32	NA	NA	NA	NA
AWR13341.1\|1400494_1401052_-	hypothetical protein	NA	NA	NA	NA
AWR13342.1\|1401178_1402318_+	HIGH Nucleotidyl Transferase family protein	NA	NA	NA	NA
AWR13343.1\|1402379_1402862_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2

DBSCAN-SWA_6

1454602 : 1463012

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR13394.1\|1454602_1455169_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AWR13395.1\|1455171_1456200_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AWR13396.1\|1456192_1457677_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AWR13397.1\|1457655_1459845_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.5e-141	39.8
AWR13398.1\|1459837_1460509_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWR13399.1\|1460510_1460774_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWR13400.1\|1460773_1461478_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AWR13401.1\|1461481_1462606_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWR13402.1\|1462592_1463012_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	1.6e-18	45.8

DBSCAN-SWA_7

1609644 : 1666571

Staphylococcus_phage(76.47%)

integrase,portal,head,tail,capsid,terminase,transposase,holin

attL 1633816:1633832|attR 1668468:1668484

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR13539.1\|1609644_1610964_-\|transposase	transposase family protein	NA	NA	NA	NA
AWR13540.1\|1611169_1611553_-	hypothetical protein	NA	NA	NA	NA
AWR13541.1\|1611682_1612600_-	lipoyl synthase	NA	NA	NA	NA
AWR13542.1\|1612683_1614003_-	5'-nucleotidase, C-terminal domain protein	NA	NA	NA	NA
AWR13543.1\|1614029_1614857_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWR13544.1\|1614869_1615718_-	hypothetical protein	NA	NA	NA	NA
AWR13545.1\|1616102_1617170_-	nitronate monooxygenase family protein	NA	NA	NA	NA
AWR13546.1\|1617183_1618224_-	hypothetical protein	NA	NA	NA	NA
AWR13547.1\|1618588_1618903_+	putative membrane protein	NA	NA	NA	NA
AWR13548.1\|1619732_1619918_-	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.7e-26	100.0
AWR13549.1\|1620100_1620229_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	1.1e-15	100.0
AWR13550.1\|1620627_1621185_+	putative penicillin binding protein	A0A0F6N4L1	Staphylococcus_phage	7.4e-96	100.0
AWR13551.1\|1621244_1622657_-	N-acetylmuramoyl-L-alanine amidase family protein	A0A0F6N3N1	Staphylococcus_phage	5.8e-286	100.0
AWR13552.1\|1622643_1622919_-\|holin	holin, SPP1 family	A0A0F6N3M0	Staphylococcus_phage	8.6e-45	100.0
AWR13553.1\|1622974_1623370_-	hypothetical protein	A1KXB6	Staphylococcus_virus	1.6e-68	100.0
AWR13554.1\|1623375_1624614_-	hypothetical protein	A0A0F6N3G7	Staphylococcus_phage	2.5e-208	98.8
AWR13555.1\|1624626_1626525_-	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q8SDT1	Staphylococcus_phage	0.0e+00	99.4
AWR13556.1\|1626661_1626961_-	hypothetical protein	A0A0H4ITZ0	Staphylococcus_phage	7.6e-47	100.0
AWR13557.1\|1627001_1627184_-	hypothetical protein	A0A2H4PQV2	Staphylococcus_phage	1.9e-29	100.0
AWR13558.1\|1627184_1627562_-	hypothetical protein	Q9FZY7	Staphylococcus_virus	1.2e-60	100.0
AWR13559.1\|1627561_1629385_-	hypothetical protein	M9NUJ5	Staphylococcus_phage	1.1e-276	92.9
AWR13560.1\|1629384_1631295_-	putative minor structural protein	Q4ZDU1	Staphylococcus_virus	0.0e+00	98.7
AWR13561.1\|1631309_1633211_-\|tail	prophage endopeptidase tail family protein	I1W634	Staphylococcus_phage	0.0e+00	99.8
AWR13562.1\|1633219_1634167_-\|tail	phage tail family protein	Q8SDT6	Staphylococcus_phage	6.1e-183	99.7
1633816:1633832	attL	NA	NA	NA	NA
AWR13563.1\|1634179_1637644_-	putative membrane protein	Q4ZDL9	Staphylococcus_virus	2.3e-267	100.0
AWR13564.1\|1637660_1638005_-	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
AWR13565.1\|1638034_1638400_-	phage family protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
AWR13566.1\|1638461_1639043_-\|tail	phage major tail protein, TP901-1 family	A0A0F6N3L8	Staphylococcus_phage	4.9e-106	100.0
AWR13567.1\|1639061_1639445_-	hypothetical protein	E0Y3L5	Staphylococcus_virus	3.8e-67	98.4
AWR13568.1\|1639456_1639804_-	hypothetical protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
AWR13569.1\|1640102_1640435_-\|head,tail	phage gp6-like head-tail connector family protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
AWR13570.1\|1640443_1640731_-	hypothetical protein	S4V6D9	Staphylococcus_phage	1.4e-45	98.9
AWR13571.1\|1640752_1641727_-\|capsid	phage major capsid protein, HK97 family	E0Y3L0	Staphylococcus_virus	2.2e-183	100.0
AWR13572.1\|1641747_1642362_-	hypothetical protein	S4V984	Staphylococcus_phage	6.1e-67	98.0
AWR13573.1\|1642470_1642641_-	hypothetical protein	A0A0F6N3E9	Staphylococcus_phage	1.5e-23	100.0
AWR13574.1\|1642713_1643709_-\|head	phage head morphogenesis, SPP1 gp7 family domain protein	A0A0F6N3F1	Staphylococcus_phage	2.0e-184	100.0
AWR13575.1\|1643715_1645254_-\|portal	phage portal protein, SPP1 family	A0A0F6N4I8	Staphylococcus_phage	2.4e-293	100.0
AWR13576.1\|1645264_1646560_-\|terminase	phage terminase, large subunit, PBSX family	A0A0F6N3L3	Staphylococcus_phage	3.0e-257	100.0
AWR13577.1\|1646562_1647057_-\|terminase	terminase small subunit	A0A0F6N3K6	Staphylococcus_phage	7.8e-89	100.0
AWR13578.1\|1647244_1647667_-	phage transcriptional regulator, RinA family protein	A0A0F6N3E5	Staphylococcus_phage	1.2e-74	100.0
AWR13579.1\|1647837_1648011_-	transcriptional activator RinB family protein	Q4ZBK0	Staphylococcus_phage	6.4e-22	100.0
AWR13580.1\|1648003_1648240_-	hypothetical protein	Q4ZDP0	Staphylococcus_virus	2.8e-36	100.0
AWR13581.1\|1648232_1648436_-	hypothetical protein	A0A0N9BAX5	Staphylococcus_phage	5.2e-31	100.0
AWR13582.1\|1648432_1648627_-	hypothetical protein	A0A2I6PEC2	Staphylococcus_phage	6.0e-29	100.0
AWR13583.1\|1648623_1648830_-	hypothetical protein	A0A0H3U2R7	Staphylococcus_phage	1.0e-18	72.1
AWR13584.1\|1648866_1649400_-	dUTP diphosphatase family protein	A1KX16	Staphylococcus_virus	2.4e-96	99.4
AWR13585.1\|1649392_1649563_-	hypothetical protein	A7TWH6	Staphylococcus_phage	1.5e-20	91.1
AWR13586.1\|1649549_1649804_-	hypothetical protein	A1KX15	Staphylococcus_virus	2.5e-38	97.6
AWR13587.1\|1649796_1650162_-	acetyltransferase family protein	A0A0F6N3K4	Staphylococcus_phage	3.5e-54	100.0
AWR13588.1\|1650176_1650419_-	phage family protein	A0A0F6N3E1	Staphylococcus_phage	1.9e-40	98.8
AWR13589.1\|1650422_1650779_-	PVL ORF-50-like family protein	A0A0F6N3E3	Staphylococcus_phage	6.5e-61	100.0
AWR13590.1\|1650906_1651212_-	hypothetical protein	A0A0F6N4H9	Staphylococcus_phage	1.7e-49	100.0
AWR13591.1\|1651212_1651398_-	hypothetical protein	A0A0F6N3K7	Staphylococcus_phage	1.1e-27	100.0
AWR13592.1\|1651402_1651807_-	hypothetical protein	A1KX76	Staphylococcus_virus	9.6e-69	100.0
AWR13593.1\|1651816_1652038_-	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	2.2e-35	100.0
AWR13594.1\|1652050_1652209_-	hypothetical protein	A0A2H4PQI7	Staphylococcus_phage	4.5e-22	100.0
AWR13595.1\|1652202_1652982_-	AFG1-like ATPase family protein	G4KNP1	Staphylococcus_phage	3.8e-146	100.0
AWR13596.1\|1652991_1653762_-	conserved phage family protein	G4KNP0	Staphylococcus_phage	6.4e-122	100.0
AWR13597.1\|1653827_1654109_+	pTS system, fructose subfamily, IIA component domain protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
AWR13598.1\|1654247_1654922_-	hypothetical protein	R4IH15	Staphylococcus_phage	1.4e-125	96.9
AWR13599.1\|1654935_1655364_-	single-stranded DNA-binding protein ssb	B2ZYV4	Staphylococcus_phage	3.9e-60	100.0
AWR13600.1\|1655363_1655987_-	hypothetical protein	A0A2H4PQQ6	Staphylococcus_phage	1.4e-114	100.0
AWR13601.1\|1655979_1656201_-	hypothetical protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
AWR13602.1\|1656210_1656471_-	hypothetical protein	Q4ZDA1	Staphylococcus_virus	1.2e-43	100.0
AWR13603.1\|1656475_1656778_-	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	1.4e-48	100.0
AWR13604.1\|1657025_1657247_-	hypothetical protein	A0A0F6N3I2	Staphylococcus_phage	1.5e-31	100.0
AWR13605.1\|1657260_1657710_-	hypothetical protein	A1KWZ2	Staphylococcus_virus	3.0e-79	100.0
AWR13606.1\|1657749_1657974_-	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
AWR13607.1\|1657974_1658742_-	phage antirepressor KilAC domain protein	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
AWR13608.1\|1658741_1658936_-	helix-turn-helix family protein	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
AWR13609.1\|1659198_1659531_+	helix-turn-helix family protein	R4IH08	Staphylococcus_phage	4.1e-57	100.0
AWR13610.1\|1659547_1660222_+	hypothetical protein	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
AWR13611.1\|1660249_1660975_+	short C-terminal domain protein	A0A0F6N4L7	Staphylococcus_phage	9.9e-125	100.0
AWR13612.1\|1661006_1661939_+	putative phage protein	A0EWN8	Staphylococcus_virus	3.9e-174	100.0
AWR13613.1\|1661918_1662098_-	putative excisionase	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
AWR13614.1\|1662210_1663260_+\|integrase	phage integrase family protein	A1KWY3	Staphylococcus_virus	4.5e-203	99.7
AWR13615.1\|1663327_1664725_-	feS assembly protein SufB	NA	NA	NA	NA
AWR13616.1\|1664875_1665340_-	SUF system FeS assembly protein, NifU family	NA	NA	NA	NA
AWR13617.1\|1665329_1666571_-	putative cysteine desulfurase	Q2XUY6	environmental_halophage	8.2e-111	44.8
1668468:1668484	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1752058 : 1766699

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR13702.1\|1752058_1752820_-	ABC transporter family protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6
AWR13703.1\|1752816_1753773_-	fecCD transport family protein	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AWR13704.1\|1753759_1754731_-	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AWR13705.1\|1755105_1756077_-	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AWR13706.1\|1756194_1758300_-	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWR13707.1\|1758262_1758661_-	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AWR13708.1\|1759461_1760328_+	eamA-like transporter family protein	NA	NA	NA	NA
AWR13709.1\|1760347_1760848_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWR13710.1\|1761188_1762694_+	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWR13711.1\|1762963_1763881_+	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AWR13712.1\|1764759_1765302_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWR13713.1\|1765640_1766699_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_9

1778670 : 1786491

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR13722.1\|1778670_1779822_-	chorismate binding enzyme family protein	S4VNU7	Pandoravirus	6.0e-23	35.7
AWR13723.1\|1779805_1780399_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AWR13724.1\|1780749_1781418_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWR13725.1\|1781419_1781839_+	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWR13726.1\|1781842_1782556_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWR13727.1\|1782654_1783239_+	putative membrane protein	NA	NA	NA	NA
AWR13728.1\|1783518_1783959_+	electron transfer DM13 family protein	NA	NA	NA	NA
AWR13729.1\|1784301_1784775_+	doxX family protein	NA	NA	NA	NA
AWR13730.1\|1784749_1785436_+	response regulator	NA	NA	NA	NA
AWR13731.1\|1785435_1786491_+	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_10

2449670 : 2509054

Staphylococcus_phage(46.15%)

tRNA,transposase,integrase

attL 2503709:2503768|attR 2509055:2509115

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR14320.1\|2449670_2450657_+\|tRNA	putative tRNA-dihydrouridine synthase	NA	NA	NA	NA
AWR14321.1\|2451323_2452517_-	quinone oxidoreductase	NA	NA	NA	NA
AWR14322.1\|2452535_2453870_-	rhodanese-like domain protein	NA	NA	NA	NA
AWR14323.1\|2453900_2454965_-	dsrE/DsrF/DrsH-like family protein	A0A2H4PQR9	Staphylococcus_phage	7.7e-09	41.8
AWR14324.1\|2455101_2455362_+	metal-sensitive transcriptional repressor family protein	NA	NA	NA	NA
AWR14325.1\|2455361_2456117_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWR14326.1\|2456550_2456877_+\|tRNA	putative tRNA-dihydrouridine synthase domain protein	NA	NA	NA	NA
AWR14327.1\|2457060_2458806_-	sporadically distributed, TIGR04141 family protein	NA	NA	NA	NA
AWR14328.1\|2459392_2460901_-	kinase domain protein	NA	NA	NA	NA
AWR14329.1\|2461015_2461642_+	hypothetical protein	NA	NA	NA	NA
AWR14330.1\|2462186_2462561_+	hypothetical protein	NA	NA	NA	NA
AWR14331.1\|2462760_2463657_+	hypothetical protein	NA	NA	NA	NA
AWR14332.1\|2463666_2464536_+	hypothetical protein	NA	NA	NA	NA
AWR14333.1\|2465080_2465638_-	K+-transporting ATPase, C subunit	NA	NA	NA	NA
AWR14334.1\|2465653_2467675_-	K+-transporting ATPase, B subunit	E4ZFI9	Streptococcus_phage	6.6e-41	29.0
AWR14335.1\|2467693_2469370_-	K+-transporting ATPase, A subunit	NA	NA	NA	NA
AWR14336.1\|2469637_2472307_+	his Kinase A domain protein	A0A2K9L0Z8	Tupanvirus	6.0e-10	21.5
AWR14337.1\|2472281_2472977_+	transcriptional regulatory, C terminal family protein	NA	NA	NA	NA
AWR14338.1\|2473907_2474069_-	hypothetical protein	NA	NA	NA	NA
AWR14339.1\|2474067_2474625_+	C4-dicarboxylate anaerobic carrier family protein	NA	NA	NA	NA
AWR14340.1\|2474831_2474966_-	hypothetical protein	NA	NA	NA	NA
AWR14341.1\|2475135_2475450_+	helix-turn-helix domain protein	A0A0N7GFG6	Staphylococcus_phage	7.7e-50	96.2
AWR14342.1\|2475434_2475788_+	HTH-like domain protein	A0A0N9S8A3	Staphylococcus_phage	4.2e-44	91.7
AWR14343.1\|2475899_2476277_+\|integrase	integrase core domain protein	A0A0N9SIX5	Staphylococcus_phage	1.4e-61	95.2
AWR14344.1\|2476527_2477574_+	hypothetical protein	NA	NA	NA	NA
AWR14345.1\|2477766_2478063_+	hypothetical protein	NA	NA	NA	NA
AWR14346.1\|2478062_2479856_+	hypothetical protein	NA	NA	NA	NA
AWR14347.1\|2480089_2481439_+	resolvase, N terminal domain protein	Q9T200	Bacillus_phage	1.4e-18	25.1
AWR14348.1\|2481460_2483089_+	ogr/Delta-like zinc finger family protein	A0A0S2SXR4	Bacillus_phage	2.4e-46	31.4
AWR14349.1\|2483606_2483957_+	hypothetical protein	NA	NA	NA	NA
AWR14350.1\|2484043_2484355_+	hypothetical protein	NA	NA	NA	NA
AWR14351.1\|2484372_2484879_+	hypothetical protein	NA	NA	NA	NA
AWR14352.1\|2484899_2485217_+	radC-like JAB domain protein	NA	NA	NA	NA
AWR14353.1\|2485335_2486421_+\|integrase	phage integrase, N-terminal SAM-like domain protein	A0A0A8WIF9	Clostridium_phage	4.5e-12	28.3
AWR14354.1\|2486417_2488310_+\|integrase	phage integrase, N-terminal SAM-like domain protein	NA	NA	NA	NA
AWR14355.1\|2488316_2488694_+\|transposase	transposase C family protein	NA	NA	NA	NA
AWR14356.1\|2488844_2489627_+	streptomycin 3''-adenylyltransferase	NA	NA	NA	NA
AWR14357.1\|2489752_2490484_-	rRNA adenine N-6-methyltransferase	E4ZFQ0	Streptococcus_phage	1.9e-51	47.5
AWR14358.1\|2491017_2491680_+	methyltransferase domain protein	NA	NA	NA	NA
AWR14359.1\|2492018_2492399_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
AWR14360.1\|2492662_2492923_-	metal-sensitive transcriptional repressor family protein	NA	NA	NA	NA
AWR14361.1\|2493058_2494123_+	dsrE/DsrF/DrsH-like family protein	NA	NA	NA	NA
AWR14362.1\|2494155_2495094_+	metallo-beta-lactamase superfamily protein	NA	NA	NA	NA
AWR14363.1\|2495229_2495490_+	rhodanese-like domain protein	NA	NA	NA	NA
AWR14364.1\|2495603_2496713_-	ROK family protein	NA	NA	NA	NA
AWR14365.1\|2497220_2497592_-	methicillin resistance regulatory protein MecI	NA	NA	NA	NA
AWR14366.1\|2497591_2499247_-	methicillin resistance mecR1 protein	NA	NA	NA	NA
AWR14367.1\|2499448_2501455_+	penicillin-binding protein 2'	NA	NA	NA	NA
AWR14368.1\|2501500_2501929_-	maoC like domain protein	NA	NA	NA	NA
AWR14369.1\|2502025_2502769_-	glycerophosphoryl diester phosphodiesterase family protein	NA	NA	NA	NA
AWR14370.1\|2503033_2503708_+\|transposase	transposase IS66 family protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
2503709:2503768	attL	NA	NA	NA	NA
AWR14371.1\|2503945_2504671_+	kanamycin nucleotidyltransferase	NA	NA	NA	NA
AWR14372.1\|2504893_2505292_+	glyoxalase-like domain protein	NA	NA	NA	NA
AWR14373.1\|2505798_2507061_+	plasmid recombination enzyme family protein	NA	NA	NA	NA
AWR14374.1\|2507581_2508079_+	replication family protein	NA	NA	NA	NA
AWR14375.1\|2508136_2508289_+	replication family protein	A0A286QS97	Streptococcus_phage	1.3e-07	59.2
AWR14376.1\|2508379_2509054_+\|integrase	integrase core domain protein	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1
2509055:2509115	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: CP029680.1|AWR14344.1|2476527_2477574_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP029680.1|AWR14344.1|2476527_2477574_+|hypothetical-protein

2476527_2477574_+

348 aa aa

HTH_56

Identity	Hit_domain_coverage
0.4144144144144144	1.0

2449670-2509054

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP029680_1	Orphan	1.1\|114161\|31\|CP029680\|CRISPRCasFinder	114161-114191	31	2456516-2456546	2

1. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to CP029680 position: 2456516-2456546, mismatch: 2

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029680

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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