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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029679 Staphylococcus aureus strain AR_0215 plasmid unnamed1, complete sequence 0 crisprs csa3 0 0 0 0
CP029680 Staphylococcus aureus strain AR_0215 chromosome, complete genome 8 crisprs RT,csa3,DEDDh,cas3,DinG 8 2 10 1

Results visualization

1. CP029680
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_1 114136-114216 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_3 234489-234570 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_4 363669-363750 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_5 796351-796435 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_6 1674902-1674983 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_7 1723586-1723664 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_8 2119686-2119788 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029680_10 2859476-2859554 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029680_4 4.1|363693|34|CP029680|CRISPRCasFinder 363693-363726 34 CP029680.1 1323660-1323693 0 1.0
CP029680_4 4.1|363693|34|CP029680|CRISPRCasFinder 363693-363726 34 CP029680.1 1723632-1723665 0 1.0
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1710891-1710921 1 0.968
CP029680_4 4.1|363693|34|CP029680|CRISPRCasFinder 363693-363726 34 CP029680.1 669666-669699 1 0.971
CP029680_5 5.1|796377|33|CP029680|CRISPRCasFinder 796377-796409 33 CP029680.1 1111919-1111951 1 0.97
CP029680_5 5.1|796377|33|CP029680|CRISPRCasFinder 796377-796409 33 CP029680.1 1718074-1718106 1 0.97
CP029680_7 7.1|1723610|31|CP029680|CRISPRCasFinder 1723610-1723640 31 CP029680.1 761922-761952 1 0.968
CP029680_10 10.1|2859499|33|CP029680|CRISPRCasFinder 2859499-2859531 33 CP029680.1 1674613-1674645 1 0.97
CP029680_10 10.1|2859499|33|CP029680|CRISPRCasFinder 2859499-2859531 33 CP029680.1 1710831-1710863 1 0.97
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 124962-124992 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 465950-465980 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 781741-781771 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1023530-1023560 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1111963-1111993 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1318062-1318092 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1464556-1464586 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1674617-1674647 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1710835-1710865 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 1891519-1891549 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 2158495-2158525 2 0.935
CP029680_1 1.1|114161|31|CP029680|CRISPRCasFinder 114161-114191 31 CP029680.1 2456516-2456546 2 0.935
CP029680_4 4.1|363693|34|CP029680|CRISPRCasFinder 363693-363726 34 CP029680.1 1107545-1107578 2 0.941
CP029680_4 4.1|363693|34|CP029680|CRISPRCasFinder 363693-363726 34 CP029680.1 2586167-2586200 2 0.941
CP029680_6 6.1|1674926|34|CP029680|CRISPRCasFinder 1674926-1674959 34 CP029680.1 1111919-1111952 2 0.941
CP029680_9 9.1|2784331|46|CP029680|PILER-CR 2784331-2784376 46 CP029680.1 2780681-2780726 2 0.957
CP029680_9 9.2|2784394|37|CP029680|PILER-CR 2784394-2784430 37 CP029680.1 2780744-2780780 2 0.946
CP029680_10 10.1|2859499|33|CP029680|CRISPRCasFinder 2859499-2859531 33 CP029680.1 339729-339761 2 0.939
CP029680_10 10.1|2859499|33|CP029680|CRISPRCasFinder 2859499-2859531 33 CP029680.1 1710887-1710919 2 0.939

1. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 1323660-1323693, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

2. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 1723632-1723665, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

3. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1710891-1710921, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

4. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 669666-669699, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacaaagaatttcgaaaagaaattctacaa	Protospacer
********.*************************

5. spacer 5.1|796377|33|CP029680|CRISPRCasFinder matches to position: 1111919-1111951, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

6. spacer 5.1|796377|33|CP029680|CRISPRCasFinder matches to position: 1718074-1718106, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
***************************.*****

7. spacer 7.1|1723610|31|CP029680|CRISPRCasFinder matches to position: 761922-761952, mismatch: 1, identity: 0.968

ggcaatgcaagttggcggggccccaacacag	CRISPR spacer
ggcaatggaagttggcggggccccaacacag	Protospacer
******* ***********************

8. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 1674613-1674645, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

9. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 1710831-1710863, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

10. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 124962-124992, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

11. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 465950-465980, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

12. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 781741-781771, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

13. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1023530-1023560, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

14. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1111963-1111993, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

15. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1318062-1318092, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

16. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1464556-1464586, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

17. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1674617-1674647, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

18. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1710835-1710865, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

19. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 1891519-1891549, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

20. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 2158495-2158525, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

21. spacer 1.1|114161|31|CP029680|CRISPRCasFinder matches to position: 2456516-2456546, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

22. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 1107545-1107578, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgataagaaattccacaa	Protospacer
******************* *********.****

23. spacer 4.1|363693|34|CP029680|CRISPRCasFinder matches to position: 2586167-2586200, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaaaagaatttcgaaaagaaattctacaa	Protospacer
****** *.*************************

24. spacer 6.1|1674926|34|CP029680|CRISPRCasFinder matches to position: 1111919-1111952, mismatch: 2, identity: 0.941

atgggccccaacacagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
************* ***************.****

25. spacer 9.1|2784331|46|CP029680|PILER-CR matches to position: 2780681-2780726, mismatch: 2, identity: 0.957

acaaagataaacctaattatcaatttggtggacacaacagtgttga	CRISPR spacer
acaaagataaacctaattatcaattcggtggacacaatagtgttga	Protospacer
*************************.***********.********

26. spacer 9.2|2784394|37|CP029680|PILER-CR matches to position: 2780744-2780780, mismatch: 2, identity: 0.946

ttccaaaagtaagtggtcaaaatgaaggtcaacaaac	CRISPR spacer
ttccaaaagtaagcggccaaaatgaaggtcaacaaac	Protospacer
*************.**.********************

27. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 339729-339761, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaggctggcggaaagtcagcttacaataatg	Protospacer
*** .****************************

28. spacer 10.1|2859499|33|CP029680|CRISPRCasFinder matches to position: 1710887-1710919, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029680_2 2.1|222190|34|CP029680|CRISPRCasFinder 222190-222223 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
CP029680_2 2.1|222190|34|CP029680|CRISPRCasFinder 222190-222223 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765
CP029680_3 3.1|234514|32|CP029680|CRISPRCasFinder 234514-234545 32 NC_016587 Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence 41454-41485 9 0.719
CP029680_3 3.1|234514|32|CP029680|CRISPRCasFinder 234514-234545 32 NZ_CP020399 Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence 296489-296520 10 0.688

1. spacer 2.1|222190|34|CP029680|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

2. spacer 2.1|222190|34|CP029680|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

3. spacer 3.1|234514|32|CP029680|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

4. spacer 3.1|234514|32|CP029680|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 358785 : 411569 73 Staphylococcus_phage(92.86%) integrase,portal,protease,head,tail,capsid,holin attL 367629:367646|attR 392126:392143
DBSCAN-SWA_2 500524 : 616981 111 Staphylococcus_phage(86.89%) tRNA,transposase,protease,integrase attL 547520:547536|attR 582730:582746
DBSCAN-SWA_3 737721 : 746764 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_4 881722 : 969281 104 Staphylococcus_phage(82.05%) integrase,portal,protease,tRNA,head,terminase,capsid,tail,holin attL 887301:887329|attR 932977:933005
DBSCAN-SWA_5 1320373 : 1402862 103 Staphylococcus_phage(82.61%) portal,tRNA,head,tail,capsid,terminase,transposase,holin NA
DBSCAN-SWA_6 1454602 : 1463012 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1609644 : 1666571 79 Staphylococcus_phage(76.47%) integrase,portal,head,tail,capsid,terminase,transposase,holin attL 1633816:1633832|attR 1668468:1668484
DBSCAN-SWA_8 1752058 : 1766699 12 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_9 1778670 : 1786491 10 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_10 2449670 : 2509054 57 Staphylococcus_phage(46.15%) tRNA,transposase,integrase attL 2503709:2503768|attR 2509055:2509115
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
CP029680.1|AWR14344.1|2476527_2477574_+|hypothetical-protein 2476527_2477574_+ 348 aa aa NA HTH_56 NA 2449670-2509054 yes