CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029644	Corynebacterium diphtheriae strain BQ11 chromosome, complete genome	1 crisprs	cas1,cas2,DEDDh,csa3,cas3,WYL,cas4,DinG	0	7	10	0

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CRISPR-Cas detection and classification

Crispr_ID: CP029644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029644_1

39566-40368

TypeII

Consensus_repeat	Method
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	PILER-CR

12 spacers

cas2,cas1,cas9

The CRISPR arrays of CP029644_1

>merge|CP029644|1|39566-40368|CRISPRCasFinder,CRT,PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCACGTCACCATACATCGCCTACACCGCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTTCTGCTCGGGCGCCAGCACACGCTGCAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCACCCGCATGCGGGTTTTCAGTACATCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTGGATCCGTTCGATGCAAAGCAACCAGTGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCATCCGCTTTCACGAACCCCACATCAAGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTGTCTATCCATTTACCGTCGCCGGTTGCGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCACCCGCATGCGGGTTTTCAGTACATCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTCCGCTGTGGAGGAGTCACGTGCGGCTAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCGGCAAGTAGTGGTTGAGCACTGGCGGGAGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCTTCCCACAGCTCCCCTAGCCATTCCGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCTATCAAAAAGCTTCACCTTCTCGGTGAGGAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGCCCGCACCAGCGGGGATGAACCGTAGGAGAAGTTTATCAGGGTTTTTGGGAATGAGGGTGCCTG

>CP029644|1|1|39566-40305|CRISPRCasFinder
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACGTCACCATACATCGCCTACACCGCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TTCTGCTCGGGCGCCAGCACACGCTGCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGGATCCGTTCGATGCAAAGCAACCAGT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CATCCGCTTTCACGAACCCCACATCAAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGTCTATCCATTTACCGTCGCCGGTTGC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TCCGCTGTGGAGGAGTCACGTGCGGCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GGCAAGTAGTGGTTGAGCACTGGCGGGA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTTCCCACAGCTCCCCTAGCCATTCCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TATCAAAAAGCTTCACCTTCTCGGTGAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC

>CP029644|1|1|39566-40368|CRT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACGTCACCATACATCGCCTACACCGCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TTCTGCTCGGGCGCCAGCACACGCTGCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGGATCCGTTCGATGCAAAGCAACCAGT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CATCCGCTTTCACGAACCCCACATCAAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGTCTATCCATTTACCGTCGCCGGTTGC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TCCGCTGTGGAGGAGTCACGTGCGGCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GGCAAGTAGTGGTTGAGCACTGGCGGGA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTTCCCACAGCTCCCCTAGCCATTCCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TATCAAAAAGCTTCACCTTCTCGGTGAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCGCACCAGCGGGGATGAACCGTAGGA
GAAGTTTATCAGGGTTTTTGGGAATGAGGGTGCCTG

>CP029644|1|1|39630-40305|PILER-CR
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TTCTGCTCGGGCGCCAGCACACGCTGCA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGGATCCGTTCGATGCAAAGCAACCAGT
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CATCCGCTTTCACGAACCCCACATCAAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TGTCTATCCATTTACCGTCGCCGGTTGC
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CACCCGCATGCGGGTTTTCAGTACATCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TCCGCTGTGGAGGAGTCACGTGCGGCTA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	GGCAAGTAGTGGTTGAGCACTGGCGGGA
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	CCTTCCCACAGCTCCCCTAGCCATTCCG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC	TATCAAAAAGCTTCACCTTCTCGGTGAG
GAAGTCTATCAGGGTTTTTGAGAACTGAACCCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029644.1\|AWR14769.1\|42269_42539_-\|putative-septation-inhibitor-protein	unknown	unknown	gnl\|CDD\|178907
CP029644.1\|AWR14758.1\|29992_31081_+\|putative-thiamine-biosynthesis-oxidoreductase	unknown	unknown	gnl\|CDD\|274092
CP029644.1\|AWR14775.1\|50464_50953_-\|putative-secreted-protein	unknown	unknown	gnl\|CDD\|224630
CP029644.1\|AWR14759.1\|31064_31265_+\|thiamine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|273754
CP029644.1\|AWR14771.1\|44661_46191_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
CP029644.1\|AWR14760.1\|31266_32052_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
CP029644.1\|AWR14772.1\|46203_47664_-\|putative-secreted-penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
CP029644.1\|AWR14773.1\|47660_49010_-\|cell-division-protein	unknown	unknown	gnl\|CDD\|223843
CP029644.1\|AWR14768.1\|40669_40810_+\|transposase-like-protein	unknown	unknown	gnl\|CDD\|225865
CP029644.1\|AWR14763.1\|34067_34553_+\|transposase-like-protein	unknown	unknown	unknown
CP029644.1\|AWR14762.1\|33058_33913_+\|multifunctional-thiamine-phosphate-pyrophosphorylase	unknown	unknown	gnl\|CDD\|237797
CP029644.1\|AWR14761.1\|32051_33062_+\|thiamine-biosynthesis-protein-ThiF	unknown	unknown	gnl\|CDD\|235528
CP029644.1\|AWR14776.1\|50966_51833_-\|putative-FHA-domain-protein	unknown	unknown	gnl\|CDD\|378850
CP029644.1\|AWR14765.1\|35029_38284_+\|CRISPR-associated-endonuclease	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|375896
CP029644.1\|AWR14774.1\|49010_50465_-\|phosphoprotein-phosphatase	unknown	unknown	gnl\|CDD\|223704
CP029644.1\|AWR14767.1\|39185_39515_+\|CRISPR-associated-protein	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP029644.1\|AWR14764.1\|34784_34949_-\|hypothetical-protein	unknown	unknown	unknown
CP029644.1\|AWR14766.1\|38287_39202_+\|CRISPR-associated-protein	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP029644.1\|AWR14777.1\|52346_52646_-\|hypothetical-protein	unknown	unknown	unknown
CP029644.1\|AWR14770.1\|42655_44665_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916

Protein	Function_ID	Function_description	E-value
CP029644.1\|AWR14769.1\|42269_42539_-\|putative-septation-inhibitor-protein	gnl\|CDD\|178907	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed.	2.52021e-46
CP029644.1\|AWR14758.1\|29992_31081_+\|putative-thiamine-biosynthesis-oxidoreductase	gnl\|CDD\|274092	TIGR02352, Glycine_oxidase, glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	3.73048e-127
CP029644.1\|AWR14775.1\|50464_50953_-\|putative-secreted-protein	gnl\|CDD\|224630	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms].	4.98161e-18
CP029644.1\|AWR14759.1\|31064_31265_+\|thiamine-biosynthesis-protein	gnl\|CDD\|273754	TIGR01683, thiamine_biosynthesis_protein_ThiS, thiamine biosynthesis protein ThiS. This model represents ThiS, a small, ubiquitin-like thiamine biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	6.72491e-21
CP029644.1\|AWR14771.1\|44661_46191_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.50994e-107
CP029644.1\|AWR14768.1\|40669_40810_+\|transposase-like-protein	gnl\|CDD\|225865	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.56055e-06
CP029644.1\|AWR14772.1\|46203_47664_-\|putative-secreted-penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.74293e-80
CP029644.1\|AWR14773.1\|47660_49010_-\|cell-division-protein	gnl\|CDD\|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	2.78845e-82
CP029644.1\|AWR14760.1\|31266_32052_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	2.10871e-148
CP029644.1\|AWR14762.1\|33058_33913_+\|multifunctional-thiamine-phosphate-pyrophosphorylase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	8.07063e-111
CP029644.1\|AWR14761.1\|32051_33062_+\|thiamine-biosynthesis-protein-ThiF	gnl\|CDD\|235528	PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated.	0
CP029644.1\|AWR14776.1\|50966_51833_-\|putative-FHA-domain-protein	gnl\|CDD\|378850	pfam12401, DUF3662, Protein of unknown function (DUF2662). This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with pfam00498.	1.10833e-41
CP029644.1\|AWR14765.1\|35029_38284_+\|CRISPR-associated-endonuclease	gnl\|CDD\|375896	pfam18470, Cas9_a, Cas9 alpha-helical lobe domain. This is an alpha-helical lobe domain found in Cas9 proteins. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. Amino acid residues located in both the nuclease and alpha-helical lobe clefts are highly conserved within type II-A Cas9 proteins.	2.33293e-122
CP029644.1\|AWR14774.1\|49010_50465_-\|phosphoprotein-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	1.80274e-73
CP029644.1\|AWR14767.1\|39185_39515_+\|CRISPR-associated-protein	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.12332e-19
CP029644.1\|AWR14766.1\|38287_39202_+\|CRISPR-associated-protein	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.16407e-115
CP029644.1\|AWR14770.1\|42655_44665_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.17005e-121

>CP029644.1|AWR14767.1|39185_39515_+|CRISPR-associated-protein
MPKKGSDPVWCVVMFDLPVKTKTQRKQATAFRQNLLDLGFCMAQLSVYVQYLPLAAKLSNLVKLIKEKLPPGGDVRILSVSDIQWSKMIRFSSSAEVSGEEKPDQLAIF
>CP029644.1|AWR14766.1|38287_39202_+|CRISPR-associated-protein
MNPGWRVVDLIDFDGKVSYQRGQLAITSDSGELRATLPLAQIAVVLIGNKIIISGAVLVKLSEYDIAVLVCDWRRVPVAGSFSWNEHTRIAARQRAQASLSLPRQKSAWAQIIKAKILGQARTAAQLGFDATDLKNLARAVRSGDVDNREAMAAKRYWEIISTEDDFRRLPGLAATGWNGALDYAYTVLRGHGMRAICSAGLVGTLGVFHHGRGNQFALVDDLIEPFRPAIDYAVFSIVSNAQELDKETKRQLVAAVEEPFNSAGQSIPTVFTAFAQQYGRYVEGDVEKLVPPIWEGPFDAEER
>CP029644.1|AWR14765.1|35029_38284_+|CRISPR-associated-endonuclease
MKYHVGIDVGTFSVGLAAIEVDDAGMPIKTLSLVSHIHDSGLDPDKIKSAVTRLASSGIARRTRRLYRRKRRRLQQLDKFIQRQGWPVIELEDYSDPLYPWKVRAELAASYIADEKERGEKLSVALRHIARHRGWRNPYAKVSSLYLPDEPSDAFKAIREEIKRASGQPVPETATVGQMVTLCELGTLKLRGEGGVLSARLQQSDHAREIQEICRMQEIGQELYRKIIDVVFAAESPKGSASSRVGKDPLQPGKNRALKASDAFQRYRIAALIGNLRVRVDGEKRILSVEEKNLVFDHLVNLAPKKEPEWVTIAEILGIDRGQLIGTATMTDDGERAGARPPTHDTNRSIVNSRIAPLVDWWKTASALEQHAMVKALSNAEVDDFDSPEGAKVQAFFADLDDDVHAKLDSLHLPVGRAAYSEDTLVRLTRRMLADGVDLYTARLQEFGIEPSWTPPAPRIGEPVGNPAVDRVLKTVSRWLESATKTWGAPERVIIEHVREGFVTEKRAREMDGDMRRRAARNAKLFQEMQEKLNVQGKPSRADLWRYQSVQRQNCQCAYCGSPITFSNSEMDHIVPRAGQGSTNTRENLVAVCHRCNQSKGNTPFAIWAKNTSIEGVSVKEAVERTRHWVTDTGMRSTDFKKFTKAVVERFQRATMDEEIDARSMESVAWMANELRSRVAQHFASHGTTVRVYRGSLTAEARRASGISGKLEFLDGVGKSRLDRRHHAIDAAVIAFTSDYVAETLAVRSNLKQSQAHRQEAPQWREFTGKDAEHRAAWRVWCQKMEKLSALLTEDLRDDRVVVMSNVRLRLGNGSAHEETIGKLSKVKLGSQLSVSDIDKASSEALWCALTREPDFDPKDGLPANPERHIRVNGTHVYAGDNIGLFPVSAGSIALRGGYAELGSSFHHARVYKITSGKKPAFAMLRVYTIDLLPYRNQDLFSVELKPQTMSMRQAEKKLRDVLATGNAEYLGWLVVDDELVVDTSKIATDQVKAVEAELGTIRRWRVDGFFGDTRLRLRPLQMSKEGIKKESAPELSKIIDRPGWLPAVNKLFSEGNVTVVRRDSLGRVRLESTAHLPVTWKVQ
>CP029644.1|AWR14764.1|34784_34949_-|hypothetical-protein
MLTEVQFYLIKLVTYQKLGNRFSIFTPLTHPINYNAVIPVAPPRVFLRAQLHLI
>CP029644.1|AWR14763.1|34067_34553_+|transposase-like-protein
MQPNGNVIVIEAEPINEYLTCGQPKVLRDHVIHSLVDLPIIDHPTRIYVRLPRYRCTNKRCLQKTFHTGLACALDNSKTTNRVTHWILQRLSLSRCSRRDLQRQALHLVVPDPRRQHPTHNQCTLKPEEPLNGGISKDFSWHFTPNRPFGQIWCEVPSFRG
>CP029644.1|AWR14762.1|33058_33913_+|multifunctional-thiamine-phosphate-pyrophosphorylase
MTPHILTIAGSDPSGGAGIQADLKSIMAAGGYGMAAITALTAQNTCGVTAIHTPPTEFLSQQLRAISDDITIHAIKIGMIGSAEAATAIATWLDQLHHTPIVVLDPVMVATSGSVLGERHYFEPLLRHATVITPNLPELAVLTNNHDPEQTEHAAHSLAEQYDCAVLLKGGHRHGTNDLGNTWITASGPQFHAPSPRIHTTNTHGTGCSLSSALATRLAIEPPEPALHWATTWLNGAIAHGSDLNVGHGNGPVDHSYRLGEYSANCNTHPKNSRRATFNMAPQL
>CP029644.1|AWR14761.1|32051_33062_+|thiamine-biosynthesis-protein-ThiF
MLDELERQRVARQLRLPGFGIEQQERLNKGRVLVIGAGGLGSPALQSLAAAGVGSIRLVDNDTVDVSNIQRQILFGVGDVGRSKVHVAAERLRALQPGIRIDARTERLTAHNAHELAEGCDVILDGSDTFATKFLCGDLAEITGIPLVWGSVLQFDGHMGVFTREVGLRDLFPEAPTQGLNCADAGVLGATTAVIANLMATETIKILAGIGTVQPGAVTTYNALTSTFRTYTVGRDPLRPAARTLHTWTLPNEYELIDVREPHEIEHTPSGAHITLPQSMWNDTTAIQHALDNITTDNVVVVCASGIRSAAFIEQFAHLNPHLTFHNVPSGINELP
>CP029644.1|AWR14760.1|31266_32052_+|thiazole-synthase
MLTIADRSFQSHLIMGTGGASSFDTLEKSLIASGTELTTVAMRRHAAHTGAHGESVFELMQRLNITPLPNTAGCRTARDAILTAQLAREALDTSWIKVEVIADDTTLLPDVLELIDATETLTNDGFTVLAYTSDDPVVAQRLEDAGAAAVMPLGSPIGTGLGILNPHNIELICSRASVPVLLDAGIGTASDATLAMELGCSGVLLASAINRCINPIAMATAMKHAVEAGRLAREAGRIPRREHAVASSSFEGLASWADEVL
>CP029644.1|AWR14759.1|31064_31265_+|thiamine-biosynthesis-protein
MNIYINDTPTAIESPQLTDIISNHCNGIRPGIAVAINQRVIPRSQWDTTTVTAGDHLDILTAVQGG
>CP029644.1|AWR14758.1|29992_31081_+|putative-thiamine-biosynthesis-oxidoreductase
MKIAVVGGGIVGLSTAFELSTRGYNVHVFDPNPASGASHFAGGMLAPAAEVQFQQDPLFPLMKRAGKLWLDMVRRVAQHTNLPTGYRTEGTLVVAADRADAEHLKQLRATQEAAGMDVRPITTRQARGLEPALGPRLSAAVHIPNDTQVAPRVFLTALLDALDDCGVEVIKEKITDLEPLYQQFEVVVLAAGLGAQHLSPIPLALRPVRGDILRVQTEPGAVNMVVRGWVNDRPIYIIPRANGEIAIGATSREDERDLPSVEGIYDLLRDAIRVVPGIVDSSLIEANVGVRPGTPDDLPYLGWASDRLIISTGYFRHGILLSALGAHVTACLIDGTDPGIDLTACAPDRHHNERGTTHEHLH
>CP029644.1|AWR14768.1|40669_40810_+|transposase-like-protein
MIVSLYAGGMTVRDIRHHMATVMRVDISHETISAVTDAVLDEVMVW
>CP029644.1|AWR14769.1|42269_42539_-|putative-septation-inhibitor-protein
MPKSKINHSSTAYTAGSTANRTPVKINSTGTPLWYKIIMFGLILAGLLWLIVNYLAGQDISFMTELGPWNYGIGFGLFIIGLLMTMGWR
>CP029644.1|AWR14770.1|42655_44665_-|serine/threonine-protein-kinase
MTDIVLADRYRLGDVIGTGGMSEVYEATDVLLGRKVAVKMLRADLARDVNFRERFRREAQNSGKLNHPAIVAVYDTGETPRAGLNTPYIVMELVNGRTLRDIVREDGPLTPSQAAHTLIPVCHALQVSHDAGIIHRDIKPANVMITNTGAVKIMDFGIARALDDATSAMTQTSAVIGTAQYLSPEQARGKLADARSDVYALGCVLYETLTGKPPFEGETPFAVAYQHVQEDPVKPSEYIADLSPTAAINVDAVVLTAMSKHPGDRYQTAQEMCADLERLERNAVTDAARHYVTPTSFATQDPASTTVVPVTQVTELDHAEAGAGVVPAGAVAGSAAVAGAGGAHAAPRSSNRGLRILAAILAVLVLAVGAGFAIDHFGGGPFSQRSTVTIPKLQNSTQQDAVNQLEKLGLQVNVIEEPNPDIPRGKVIRTNPTDGSNVQRNSTVRLTISSGKEITEVPDLSGKNTADAVKILEAAGLLLDPTVREDSSDTVPKGEIIEVSPAAGSQVSRGSKVSITVSTGVETVRVPVITGMKWDQAEGNLTSLGFKPEVVRVDSVEPAGTVVAVPDEGAEVPKGSRVTVQISNGAMFTVPEITRQTIGDAVRILHDAGWNGNASRLIQAAKVPTVAVTDQNLIASQLPTPGTALRKDAPIEIRLYEFNLAALVPPAQH
>CP029644.1|AWR14771.1|44661_46191_-|serine/threonine-protein-kinase
MTQSQSPDPALQALVGSDYALQWVVGNGGMSTVWLADDLRNQREVAIKVLRPEFSDNEEFLSRFRNEALASEHIDSDNVVRTYDYREVTDDMGRTLCFIVMEYVRGESLADMLARKGRLEEDLALDVLEQAAHGLSIIHRMGMVHRDIKPGNLLITQNGQVKITDFGIAKAAAAVPLTRTGMVVGTAQYVSPEQAQGRDVTAATDVYSLGVVGYEMLVGQRPFTGDSSVSVAIAHINQAPPAMPTSVSAPARELIGIALRKDPAHRYADGNELALAVSATRMGQRPPQPKSAPLQHIAPQPAPTESTYALGATAQPTTVIPATGQVPAAPAAAPAAAAAYPASTVIPAGTPRQEPEKQSSGWGAGIVVGALAALLLGTAAWAASQGMFDDLFDKTSQSSESSVPPPPVTATVTETPTPQITTVVPEPLPTSSPEPTPSETKRTPDESHPSSDHQLPSVRPSHNGRPSSQAPHAPHAPTQDADQPAESPAPDTLDSLIENLNKLNQGGAQ
>CP029644.1|AWR14772.1|46203_47664_-|putative-secreted-penicillin-binding-protein-2
MNRSIRFTSVFALLLILILLVNLTIIQGFSQEKYAHNALNRRGFIELKSQARGQISTGGQVLAESYQDEEGFYQRRYVTNPAIYGPIEGYLSDIYGASGMESNLNGVLSGTDSSVSVRRWTDELLGRKHSGANVELTLLPQVQEVAYNQMANAGYEGAVVAIKPSTGEILAIASTPSYDPSAIVNPDTAEQTWAALNADPGNPLLNHATQETLPPGSTFKVITTAAGLNAGYGPGSMLTGQDRITLPDGITTLENYAGQTCAGSQNVTLATAFQYSCNTAFVQMGIDVGQKKFDEAAHAFGVNDRYDLGVDMAPGTIGDVSDPSARGQSSIGQRDVAMSVLHNAVVAATVANGGKRMEPHLVSRIVGQDLKVIKETKPHQINEAVTPEVAATLTDLMRLSERHTAGYTGADIASKTGTAEHGEDSRNSNPHAWYIAFGPSANADVAVAVVVKNGGDAGQAATGGSVAAPIGRAVIAAAQAALAARG
>CP029644.1|AWR14773.1|47660_49010_-|cell-division-protein
MTFLRRITARPVEFGLLVMATLLIAVTLINLNMAQGLSVTSETLWVIGGFIGVFTIAHLALCFTAPHADQVMLPVASVLNGLGLVMVYRIDLARDTALASRQVIWTLVGILLMIAVLVFIRDHRMLSRYSYVLGLLGLILLALPMVWPTKMNADANIWISIGPFSVQPGEFSKILLLIFFAQLLVNKRALFNVAGYRFLGLEFPRLRDLGPILGVWAFAILVMAGENDFGPALLLFSTVLGMLYLATNRVSWLIIGAALVAVGGTALYQISSKIQSRVTNFINPLDNFNGTGYQLSQSLFGLSSGGVAGAGLGLGHPELIPVAESDFILAAVGEELGFIGLAAVLVLFAIFITRGLRTALRARDSYGKLMAAGLSLTLAIQVFVVTAGITALMPMTGLTTPFMSQGGSSLMANYILLGLILRISHSTQAAANDVVSMDEQAARGQEAHR
>CP029644.1|AWR14774.1|49010_50465_-|phosphoprotein-phosphatase
MLRLNYAAASDRGLVRGNNEDSAYAGPHLIALADGMGGHAAGEVASQLMINHLMRLDADADDNDMLALLASVADDANRAIAQGVRDVPETDGMGTTLTALMFNGADLAMCHVGDSRGYRLRDGALEQITVDDTYVQSLVDKGQLAPEDVSTHPQRSMILKAYTGRPVEPTLKMIDIRPGDRFLLCSDGLSDPVTHSTIETTLQQGTPQEAARRLVDLALRSGGPDNVTVVVADVVEADGSDKSAAAASLPVTPLTVGALNSGMPEDPRPDTAAGRAAMAIAQRQPQVILPDPEPVKEATPSPRRRMVAVISALVVLAVLISAGWWGSSMVKNNYYVTTADSDSAQGALVIENGIDVSLLGKSLHSTYQFACLSPEGDLTFVDSADAEKSCHRFRLSDLKESARGQVSTLPDGSYDEVQQQLQRLAEQTLPACITRQAAHPKDKDKKKPAAPSSAAPTTTKAASPSSTGSPDDLSTPGETCREVK
>CP029644.1|AWR14775.1|50464_50953_-|putative-secreted-protein
MESVIVFLLRIALLVLLWLLILLALYIQRKDAKSAAQTTVAPQAVTGLGVSSASSPLKKVSRRGGAPQQIVVVEGPLTGSSMQLDSLTEITLGRSKDCDFVVGDDYASARHARLIKRGSEWFAEDLDSRNGTYVGGYRIDQPEKVSAGSDIKIGRTTVRLVA
>CP029644.1|AWR14776.1|50966_51833_-|putative-FHA-domain-protein
MSIMGKVAKLDSAMQRGLDNSFAFVFGGKLVPAEIEELLKQEVQDNIVRAYEGGVESPNVFRVRVSRKDAQNLAQRYPSLADDFADRLSRYTRNQGWSTEGPVVVTIAADSGLRTGQLHASSVFDPAPQEYSRFIGVEDDVAAAAPTNDESNYESESGMNSYDADPRTEYMTAQAPDAIYTEVPVPEPKATPTVSLLLQDGSSRTYLVEEGSNIIGRSNEAHFRLPDTGVSRQHAEITWNGRDAILTDLKSTNGTTVNDTPVENWLLEDGDVITVGHSHIEVRIVEPN
>CP029644.1|AWR14777.1|52346_52646_-|hypothetical-protein
MKEKKLSSLVFGNVILESQILGTTIRIYADDMRSYSFRPSPYASLSVPLNELKGQLQPDHAEALAKKVFDSVAEELNKNYPGGCERAEKELKAWLMHTN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029644_1	1.4\|39794\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NC_007714	Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence	7232-7259	4	0.857
CP029644_1	1.4\|39794\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NZ_LN854559	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence	7225-7252	4	0.857
CP029644_1	1.4\|39794\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NZ_LN854559	Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence	18387-18414	4	0.857
CP029644_1	1.4\|39794\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NC_007184	Sodalis glossinidius pSG2 plasmid from Glossina palpalis palpalis	10408-10435	4	0.857
CP029644_1	1.4\|39794\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39794-39821	28	NC_007185	Sodalis glossinidius pSG2 plasmid from Glossina austini	10408-10435	4	0.857
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	124188-124214	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	124066-124092	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	124212-124238	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	124090-124116	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	124196-124222	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	124074-124100	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	170385-170411	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	171117-171143	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	124568-124594	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	124446-124472	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	124180-124206	4	0.852
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	124058-124084	4	0.852
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1487524-1487551	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	334100-334127	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1738155-1738182	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	38206-38233	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	2003852-2003879	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1493843-1493870	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1490574-1490601	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1451976-1452003	5	0.821
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1490096-1490123	5	0.821
CP029644_1	1.11\|40242\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	40242-40269	28	NZ_CP049247	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence	22887-22914	5	0.821
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	123517-123543	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	123541-123567	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NZ_CP009803	Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence	80081-80107	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	123525-123551	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NZ_CP020471	Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence	88022-88048	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246793-246819	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NZ_CP021924	Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2	170263-170289	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	123897-123923	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	123509-123535	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	MK977714	Corynebacterium phage Bran, complete genome	22540-22566	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_048780	Corynebacterium phage StAB, complete genome	22546-22572	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	MK977706	Corynebacterium phage Dina, complete genome	22371-22397	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	MH926061	Corynebacterium phage Troy, complete genome	22111-22137	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_048789	Corynebacterium phage Stiles, complete genome	22038-22064	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_048069	Corynebacterium phage SamW, complete genome	22111-22137	5	0.815
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_048790	Corynebacterium phage Lederberg, complete genome	22496-22522	5	0.815
CP029644_1	1.1\|39602\|28\|CP029644\|CRISPRCasFinder,CRT	39602-39629	28	MK415402	Phage apr34_1792, complete genome	20132-20159	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP034431	Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence	112045-112072	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_AP014686	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence	164109-164136	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	68248-68275	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	1926-1953	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	449842-449869	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP049702	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence	41685-41712	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP035710	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence	226537-226564	6	0.786
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP007144	Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence	51552-51579	6	0.786
CP029644_1	1.11\|40242\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	40242-40269	28	MK448408	Streptococcus satellite phage Javan296, complete genome	4452-4479	6	0.786
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	123395-123421	6	0.778
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	123419-123445	6	0.778
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	123403-123429	6	0.778
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246732-246758	6	0.778
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	123775-123801	6	0.778
CP029644_1	1.12\|40306\|27\|CP029644\|CRT	40306-40332	27	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	123387-123413	6	0.778
CP029644_2	2.1\|697874\|30\|CP029644\|CRISPRCasFinder	697874-697903	30	CP016641	Mycobacterium sp. djl-10 plasmid djl-10_1, complete sequence	56059-56088	6	0.8
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1030852-1030879	7	0.75
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	632582-632609	7	0.75
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	289838-289865	7	0.75
CP029644_1	1.2\|39666\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	39666-39693	28	NC_048144	Microbacterium phage Schubert, complete genome	20371-20398	7	0.75
CP029644_1	1.8\|40050\|28\|CP029644\|CRISPRCasFinder,CRT,PILER-CR	40050-40077	28	NZ_CP009439	Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence	52060-52087	7	0.75

1. spacer 1.4|39794|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_007714 (Sodalis glossinidius str. 'morsitans' plasmid pSG2, complete sequence) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

2. spacer 1.4|39794|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN854559 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

3. spacer 1.4|39794|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN854559 (Sodalis glossinidius str. 'morsitans' isolate B4 plasmid pSG2, complete sequence) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

4. spacer 1.4|39794|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_007184 (Sodalis glossinidius pSG2 plasmid from Glossina palpalis palpalis) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

5. spacer 1.4|39794|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_007185 (Sodalis glossinidius pSG2 plasmid from Glossina austini) position: , mismatch: 4, identity: 0.857

tggatcc-gttcgatgcaaagcaaccagt	CRISPR spacer
-gtttccggttcgatgcaaatcaaccagt	Protospacer
 *  *** ************ ********

6. spacer 1.12|40306|27|CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

7. spacer 1.12|40306|27|CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

8. spacer 1.12|40306|27|CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

9. spacer 1.12|40306|27|CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

10. spacer 1.12|40306|27|CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

11. spacer 1.12|40306|27|CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

12. spacer 1.12|40306|27|CP029644|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

13. spacer 1.12|40306|27|CP029644|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

14. spacer 1.12|40306|27|CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

15. spacer 1.12|40306|27|CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

16. spacer 1.12|40306|27|CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtaaca	Protospacer
******  ****************. *

17. spacer 1.12|40306|27|CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 4, identity: 0.852

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgca	Protospacer
******  *************** * *

18. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

19. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

20. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

21. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
ttctgctcgggcgacagcaaacgcgcga	Protospacer
************* ***** ****   *

22. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

23. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

24. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

25. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

26. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
agctgctcgggctccaggacacgctgaa	Protospacer
  ********** **** ******** *

27. spacer 1.11|40242|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049247 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.821

tatcaaaaagcttcaccttctcggtgag	CRISPR spacer
tcaccgaaagcttcaccttctcggtgaa	Protospacer
*  * .*********************.

28. spacer 1.12|40306|27|CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

29. spacer 1.12|40306|27|CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

30. spacer 1.12|40306|27|CP029644|CRT matches to NZ_CP009803 (Streptomyces sp. FR-008 plasmid pSSFR1, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcaccagcggggatgctccgtacct	Protospacer
*****************  *****

31. spacer 1.12|40306|27|CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

32. spacer 1.12|40306|27|CP029644|CRT matches to NZ_CP020471 (Rhodobacter blasticus strain 28/5 plasmid pRsa, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtatcc	Protospacer
******  ****************

33. spacer 1.12|40306|27|CP029644|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggataaaccgttgtc	Protospacer
****.***********.****** *

34. spacer 1.12|40306|27|CP029644|CRT matches to NZ_CP021924 (Acetobacter pasteurianus subsp. pasteurianus strain SRCM101468 plasmid pAP1468-2) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttaaa	Protospacer
******  *************** ..*

35. spacer 1.12|40306|27|CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

36. spacer 1.12|40306|27|CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgtcgcc	Protospacer
******  *************** *

37. spacer 1.12|40306|27|CP029644|CRT matches to MK977714 (Corynebacterium phage Bran, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

38. spacer 1.12|40306|27|CP029644|CRT matches to NC_048780 (Corynebacterium phage StAB, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

39. spacer 1.12|40306|27|CP029644|CRT matches to MK977706 (Corynebacterium phage Dina, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

40. spacer 1.12|40306|27|CP029644|CRT matches to MH926061 (Corynebacterium phage Troy, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

41. spacer 1.12|40306|27|CP029644|CRT matches to NC_048789 (Corynebacterium phage Stiles, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgt	Protospacer
****.*************.****  *

42. spacer 1.12|40306|27|CP029644|CRT matches to NC_048069 (Corynebacterium phage SamW, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

43. spacer 1.12|40306|27|CP029644|CRT matches to NC_048790 (Corynebacterium phage Lederberg, complete genome) position: , mismatch: 5, identity: 0.815

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggatgagccgtttgc	Protospacer
****.*************.****  *

44. spacer 1.1|39602|28|CP029644|CRISPRCasFinder,CRT matches to MK415402 (Phage apr34_1792, complete genome) position: , mismatch: 6, identity: 0.786

cacgtcaccatacatcgcctacaccgcg	CRISPR spacer
gctgtcaccatacaacgcctacaccgac	Protospacer
  .*********** ***********

45. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034431 (Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

46. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014686 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

47. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

48. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

49. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

50. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049702 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2c, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
cgctgctccggcgcgagcacacgctggc	Protospacer
. ****** ***** ***********

51. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
ccgcgctcgggcgcctgcacccgctgca	Protospacer
.. .*********** **** *******

52. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007144 (Hymenobacter swuensis DY53 plasmid pHsw1, complete sequence) position: , mismatch: 6, identity: 0.786

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
aactgctcggccgccagcacactctccg	Protospacer
  ******** *********** ** *.

53. spacer 1.11|40242|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to MK448408 (Streptococcus satellite phage Javan296, complete genome) position: , mismatch: 6, identity: 0.786

tatcaaaaagcttcaccttctcggtgag	CRISPR spacer
actcaaaaagctccacgttctcggtcgg	Protospacer
  **********.*** ******** .*

54. spacer 1.12|40306|27|CP029644|CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

55. spacer 1.12|40306|27|CP029644|CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

56. spacer 1.12|40306|27|CP029644|CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

57. spacer 1.12|40306|27|CP029644|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcgccagcggggataaaccgtgttg	Protospacer
****.***********.******.  .

58. spacer 1.12|40306|27|CP029644|CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

59. spacer 1.12|40306|27|CP029644|CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 6, identity: 0.778

ccgcaccagcggggatgaaccgtagga	CRISPR spacer
ccgcacacgcggggatgaaccgttcag	Protospacer
******  ***************  ..

60. spacer 2.1|697874|30|CP029644|CRISPRCasFinder matches to CP016641 (Mycobacterium sp. djl-10 plasmid djl-10_1, complete sequence) position: , mismatch: 6, identity: 0.8

ttacccgacaaaaccaaaaccg-caggtcag	CRISPR spacer
ctacccggcaaaaccaaaaccgacccggca-	Protospacer
.******.************** *  * **

61. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
gtcttcacgggcgccagcacacgcgcgg	Protospacer
 *** * *****************   .

62. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
gtcttcacgggcgccagcacacgcgcgg	Protospacer
 *** * *****************   .

63. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
gtcttcacgggcgccagcacacgcgcgg	Protospacer
 *** * *****************   .

64. spacer 1.2|39666|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NC_048144 (Microbacterium phage Schubert, complete genome) position: , mismatch: 7, identity: 0.75

ttctgctcgggcgccagcacacgctgca	CRISPR spacer
ttctgcttgggcgacagcacacgtgctc	Protospacer
*******.***** *********.  .

65. spacer 1.8|40050|28|CP029644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009439 (Streptomyces glaucescens strain GLA.O plasmid pSglau1, complete sequence) position: , mismatch: 7, identity: 0.75

tccgctgtggaggagtcacgtgcggcta	CRISPR spacer
gttcctgtggaggagtcgcgtgtggctg	Protospacer
 .. *************.****.****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

25492 : 61765

Macacine_betaherpesvirus(20.0%)

holin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR14754.1\|25492_25717_-\|transposase	transposase-like protein	A0A2I6AZV9	Macacine_betaherpesvirus	1.0e-11	48.5
AWR14755.1\|25823_26468_+	rhomboid family protein	NA	NA	NA	NA
AWR14756.1\|27544_29344_+	thiamine biosynthesis protein ThiC	NA	NA	NA	NA
AWR14757.1\|29327_29996_+	thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA
AWR14758.1\|29992_31081_+	putative thiamine biosynthesis oxidoreductase	NA	NA	NA	NA
AWR14759.1\|31064_31265_+	thiamine biosynthesis protein	NA	NA	NA	NA
AWR14760.1\|31266_32052_+	thiazole synthase	NA	NA	NA	NA
AWR14761.1\|32051_33062_+	thiamine biosynthesis protein ThiF	NA	NA	NA	NA
AWR14762.1\|33058_33913_+	multifunctional thiamine-phosphate pyrophosphorylase	NA	NA	NA	NA
AWR14763.1\|34067_34553_+\|transposase	transposase-like protein	NA	NA	NA	NA
AWR14764.1\|34784_34949_-	hypothetical protein	NA	NA	NA	NA
AWR14765.1\|35029_38284_+	CRISPR-associated endonuclease	NA	NA	NA	NA
AWR14766.1\|38287_39202_+	CRISPR-associated protein	NA	NA	NA	NA
AWR14767.1\|39185_39515_+	CRISPR-associated protein	NA	NA	NA	NA
AWR14768.1\|40669_40810_+\|transposase	transposase-like protein	NA	NA	NA	NA
AWR14769.1\|42269_42539_-	putative septation inhibitor protein	NA	NA	NA	NA
AWR14770.1\|42655_44665_-	serine/threonine-protein kinase	Q8JE84	Murine_leukemia_virus	7.3e-16	28.6
AWR14771.1\|44661_46191_-	serine/threonine-protein kinase	A0A2P1EMR8	Moumouvirus	2.7e-15	29.4
AWR14772.1\|46203_47664_-	putative secreted penicillin-binding protein 2	NA	NA	NA	NA
AWR14773.1\|47660_49010_-	cell division protein	NA	NA	NA	NA
AWR14774.1\|49010_50465_-	phosphoprotein phosphatase	NA	NA	NA	NA
AWR14775.1\|50464_50953_-	putative secreted protein	NA	NA	NA	NA
AWR14776.1\|50966_51833_-	putative FHA domain protein	NA	NA	NA	NA
AWR14777.1\|52346_52646_-	hypothetical protein	NA	NA	NA	NA
AWR14778.1\|52695_52908_+	hypothetical protein	NA	NA	NA	NA
AWR14779.1\|53052_53568_-	hypothetical protein	NA	NA	NA	NA
AWR14780.1\|53572_53836_-	regulatory protein	NA	NA	NA	NA
AWR14781.1\|54375_54834_-	phenazine biosynthesis-like domain-containing protein	NA	NA	NA	NA
AWR14782.1\|54856_56296_-	putative membrane protein	NA	NA	NA	NA
AWR14783.1\|56288_56990_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-40	40.7
AWR14784.1\|57028_57688_-	two-component system response regulator	NA	NA	NA	NA
AWR14785.1\|57687_58917_-	two-component system sensor histidine kinase	NA	NA	NA	NA
AWR14786.1\|59066_59357_+	Hypothetical protein	NA	NA	NA	NA
AWR14787.1\|59621_60296_-\|holin	choline transport system permease protein	NA	NA	NA	NA
AWR14788.1\|60302_60935_-\|holin	choline transport system permease protein	NA	NA	NA	NA
AWR14789.1\|60934_61765_-\|holin	choline transport system ATP-binding protein	G3M9Y6	Bacillus_virus	5.6e-23	31.8

DBSCAN-SWA_2

134323 : 188719

Corynebacterium_phage(53.33%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR14862.1\|134323_135301_-	hypothetical protein	B6SBZ6	Clostridium_virus	2.7e-16	28.4
AWR14863.1\|135329_135938_-	hypothetical protein	NA	NA	NA	NA
AWR14864.1\|136025_137306_-	tyrosine recombinase XerC	A0A1W6JRD7	Corynebacterium_phage	1.9e-235	95.2
AWR14865.1\|137271_137415_-	hypothetical protein	NA	NA	NA	NA
AWR14866.1\|137421_138030_-	hypothetical protein	NA	NA	NA	NA
AWR14867.1\|138041_138461_-	hypothetical protein	A0A1W6JQ88	Corynebacterium_phage	4.7e-42	64.4
AWR14868.1\|138486_138996_-	hypothetical protein	A0A220NQS0	Corynebacterium_phage	3.7e-33	46.3
AWR14869.1\|139131_139350_+	hypothetical protein	NA	NA	NA	NA
AWR14870.1\|139398_139659_+	hypothetical protein	A0A1W6JRG7	Corynebacterium_phage	4.8e-37	95.3
AWR14871.1\|139548_139818_-	hypothetical protein	NA	NA	NA	NA
AWR14872.1\|139855_140101_-	hypothetical protein	NA	NA	NA	NA
AWR14873.1\|140124_140616_+	hypothetical protein	NA	NA	NA	NA
AWR14874.1\|140596_141415_+	DNA-binding bacteriophage protein	A0A1W6JRI1	Corynebacterium_phage	4.4e-137	89.0
AWR14875.1\|141434_141635_+	hypothetical protein	NA	NA	NA	NA
AWR14876.1\|141631_141874_+	hypothetical protein	A0A1W6JRC8	Corynebacterium_phage	1.4e-19	59.0
AWR14877.1\|141885_142110_+	hypothetical protein	A0A1W6JRD0	Corynebacterium_phage	4.9e-06	44.4
AWR14878.1\|142106_142253_+	hypothetical protein	NA	NA	NA	NA
AWR14879.1\|142242_142530_+	hypothetical protein	NA	NA	NA	NA
AWR14880.1\|142522_142672_+	hypothetical protein	NA	NA	NA	NA
AWR14881.1\|142668_143370_+	hypothetical protein	NA	NA	NA	NA
AWR14882.1\|143366_143777_+	hypothetical protein	NA	NA	NA	NA
AWR14883.1\|143805_145014_+	hypothetical protein	A0A220NQT1	Corynebacterium_phage	2.8e-132	67.3
AWR14884.1\|145006_145594_+	hypothetical protein	A0A1W6JRC6	Corynebacterium_phage	4.5e-59	59.5
AWR14885.1\|146214_146688_+	hypothetical protein	A0A1C9EHY3	Gordonia_phage	4.5e-25	49.6
AWR14886.1\|146671_147739_+	hypothetical protein	A0A1C9EHW4	Gordonia_phage	2.4e-119	57.4
AWR14887.1\|147713_148325_+	hypothetical protein	A0A1C9EHV3	Gordonia_phage	2.1e-59	58.4
AWR14888.1\|148324_149650_+	hypothetical protein	A0A222YZB0	Rhodococcus_phage	1.6e-56	34.1
AWR14889.1\|149666_151373_+	hypothetical protein	A0A1C9EHV4	Gordonia_phage	5.0e-42	35.4
AWR14890.1\|151372_151681_+	hypothetical protein	NA	NA	NA	NA
AWR14891.1\|151757_152378_+	hypothetical protein	NA	NA	NA	NA
AWR14892.1\|152389_153379_+	hypothetical protein	G9FH86	Rhodococcus_phage	8.3e-106	59.8
AWR14893.1\|153387_153687_+	hypothetical protein	NA	NA	NA	NA
AWR14894.1\|153697_154108_+	hypothetical protein	NA	NA	NA	NA
AWR14895.1\|154104_154473_+	hypothetical protein	NA	NA	NA	NA
AWR14896.1\|154469_154784_+	hypothetical protein	A0A1C9EHV8	Gordonia_phage	3.6e-15	42.7
AWR14897.1\|154780_155236_+	hypothetical protein	A0A1C9EI09	Gordonia_phage	6.0e-11	28.9
AWR14898.1\|155245_156088_+\|tail	phage major tail protein	A0A1W6JRH0	Corynebacterium_phage	8.3e-14	51.2
AWR14899.1\|156228_156777_-\|transposase	transposase-like protein	A0A1B1P773	Bacillus_phage	5.2e-41	44.8
AWR14900.1\|157025_157508_-\|transposase	transposase-like protein	NA	NA	NA	NA
AWR14901.1\|157626_157980_+	hypothetical protein	NA	NA	NA	NA
AWR14902.1\|158087_158423_+	hypothetical protein	A0A1C9EHV2	Gordonia_phage	1.7e-07	43.5
AWR14903.1\|158439_164613_+\|tail	minor tail protein Gp26	A0A166XZ24	Gordonia_phage	1.7e-87	56.7
AWR14904.1\|164630_165413_+	hypothetical protein	NA	NA	NA	NA
AWR14905.1\|165413_166310_+	hypothetical protein	Q37921	Corynephage	1.6e-52	40.4
AWR14906.1\|166302_167544_+	hypothetical protein	A0A1P8D5M2	Corynebacterium_phage	2.3e-36	44.9
AWR14907.1\|167559_168744_+	extracellular matrix-binding protein ebhB	A0A1W6JRF8	Corynebacterium_phage	3.1e-67	61.1
AWR14908.1\|168745_169384_+	hypothetical protein	NA	NA	NA	NA
AWR14909.1\|169464_170202_+	hypothetical protein	A0A1W6JRK9	Corynebacterium_phage	1.6e-138	92.7
AWR14910.1\|170201_170438_+	hypothetical protein	A0A1W6JRG0	Corynebacterium_phage	9.6e-29	87.2
AWR14911.1\|170443_170908_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	7.4e-57	72.2
AWR14912.1\|170904_171243_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	7.1e-49	89.3
AWR14913.1\|171592_173275_+	hypothetical protein	A7UH54	Corynephage	0.0e+00	98.0
AWR14914.1\|173405_173672_-	hypothetical protein	NA	NA	NA	NA
AWR14915.1\|173668_173863_-	hypothetical protein	NA	NA	NA	NA
AWR14916.1\|174410_175817_+	putative secreted polysaccharide deacetylase	NA	NA	NA	NA
AWR14917.1\|175804_177178_-	GntR family regulator	NA	NA	NA	NA
AWR14918.1\|177268_178162_+	pyridoxal biosynthesis lyase pdxS	NA	NA	NA	NA
AWR14919.1\|178155_178713_+	glutamine amidotransferase involved in pyrodoxine biosynthesis	NA	NA	NA	NA
AWR14920.1\|178709_179660_-	putative fimbrial associated sortase-like protein	NA	NA	NA	NA
AWR14921.1\|180473_182159_+	putative surface-anchored fimbrial subunit	NA	NA	NA	NA
AWR14922.1\|182279_183248_+	putative fimbrial associated sortase-like protein	NA	NA	NA	NA
AWR14923.1\|183247_184075_+	putative surface-anchored fimbrial subunit	NA	NA	NA	NA
AWR14924.1\|184145_187655_+	putative surface-anchored fimbrial subunit	NA	NA	NA	NA
AWR14925.1\|187838_188156_+\|transposase	transposase-like protein	NA	NA	NA	NA
AWR14926.1\|188437_188719_+\|transposase	transposase-like protein	NA	NA	NA	NA

DBSCAN-SWA_3

270289 : 318589

uncultured_Mediterranean_phage(11.76%)

protease,integrase,transposase

attL 299831:299845|attR 317703:317717

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR15002.1\|270289_271474_+\|protease	serine protease (mycosin)	NA	NA	NA	NA
AWR15003.1\|271470_272409_-	putative hydrolase	NA	NA	NA	NA
AWR15004.1\|272496_272997_-	putative membrane protein	NA	NA	NA	NA
AWR15005.1\|273124_273778_+	hypothetical protein	NA	NA	NA	NA
AWR15006.1\|273715_274573_-	phosphoserine phosphatase	NA	NA	NA	NA
AWR15007.1\|275045_276083_+	putative morphological differentiation-related protein	NA	NA	NA	NA
AWR15008.1\|276075_277173_+	GSPII-type II/IV secretion system protein	NA	NA	NA	NA
AWR15009.1\|277169_277916_+	putative membrane protein	NA	NA	NA	NA
AWR15010.1\|277915_278494_+	putative secreted protein	NA	NA	NA	NA
AWR15011.1\|278517_278715_+	hypothetical protein	NA	NA	NA	NA
AWR15012.1\|278711_278987_+	putative secreted protein	NA	NA	NA	NA
AWR15013.1\|278983_279310_+	putative secreted protein	NA	NA	NA	NA
AWR15014.1\|279299_281636_-	ATP-dependent RNA helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	3.8e-08	27.9
AWR15015.1\|281904_282108_+	cold shock protein B	A0A1W6JNX5	Morganella_phage	3.1e-15	62.3
AWR15016.1\|282281_282899_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.0e-09	32.4
AWR15017.1\|282895_283603_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.3e-14	29.2
AWR15018.1\|283599_284847_+	putative ABC transporter permease protein	NA	NA	NA	NA
AWR15019.1\|284843_286331_+	ABC-transport solute-binding protein	NA	NA	NA	NA
AWR15020.1\|286331_288092_+	ABC-transport permease protein	NA	NA	NA	NA
AWR15021.1\|288069_289563_-	nucleoside-diphosphate-sugar epimerase	NA	NA	NA	NA
AWR15022.1\|289702_292597_+	DNA topoisomerase I	A0A1V0SCS0	Indivirus	2.9e-98	36.1
AWR15023.1\|292516_293179_-	Phosphatidylglycerophosphatase B	NA	NA	NA	NA
AWR15024.1\|293421_293586_+	hypothetical protein	NA	NA	NA	NA
AWR15025.1\|293701_293866_+	putative oxidoreductase	NA	NA	NA	NA
AWR15026.1\|293940_295917_-	metal-nicotianamine transporter YSL2	NA	NA	NA	NA
AWR15027.1\|295967_297077_+	UDP-N-acetylglucosamine diphosphorylase	NA	NA	NA	NA
AWR15028.1\|297093_298515_-	adenylate cyclase	A0A1B1IWY2	uncultured_Mediterranean_phage	1.0e-19	31.7
AWR15029.1\|298516_299884_+	DNA polymerase III delta prime subunit	S5WKH4	Pseudomonas_phage	3.8e-08	28.4
299831:299845	attL	NA	NA	NA	NA
AWR15030.1\|300289_300532_+	hypothetical protein	NA	NA	NA	NA
AWR15031.1\|301191_301956_-	tyrosine recombinase XerC	A0A1W6JRD7	Corynebacterium_phage	6.9e-76	60.3
AWR15032.1\|302181_302391_-\|integrase	putative phage integrase	A0A1W6JRD7	Corynebacterium_phage	1.4e-18	66.7
AWR15033.1\|302575_303112_-	putative DNA-binding protein	NA	NA	NA	NA
AWR15034.1\|303545_304070_+	putative secreted protein	NA	NA	NA	NA
AWR15035.1\|304076_304403_+	hypothetical protein	NA	NA	NA	NA
AWR15036.1\|304496_305846_+\|transposase	transposase	A0A218MNI5	uncultured_virus	1.4e-34	36.6
AWR15037.1\|307381_308080_+	putative alkylated DNA repair protein	NA	NA	NA	NA
AWR15038.1\|308137_308944_-\|protease	putative secreted protease	NA	NA	NA	NA
AWR15039.1\|309318_309486_-	hypothetical protein	NA	NA	NA	NA
AWR15040.1\|309550_310060_-	putative secreted protein	NA	NA	NA	NA
AWR15041.1\|310542_310743_-\|transposase	transposase	Q6H9S3	Enterobacteria_phage	1.0e-07	46.0
AWR15042.1\|310711_310906_-\|transposase	transposase-like protein	A0A0N7C1X7	Escherichia_phage	5.0e-07	61.0
AWR15043.1\|310856_312296_-\|transposase	transposase-like protein	W5R8L2	Staphylococcus_phage	2.0e-28	34.4
AWR15044.1\|312389_312785_-\|transposase	transposase-like protein	Q687G6	Enterobacteria_phage	1.2e-20	45.7
AWR15045.1\|313824_315477_-	acyl-CoA synthetase	A0A2K9KZV5	Tupanvirus	1.1e-17	22.4
AWR15046.1\|315606_316395_+	putative secreted hydrolase	NA	NA	NA	NA
AWR15047.1\|316358_317231_-	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	1.4e-93	58.0
AWR15048.1\|317242_318589_-	dTDP-4-dehydrorhamnose reductase	A0A1D8EQE2	Escherichia_phage	4.8e-24	37.6
317703:317717	attR	NA	NA	NA	NA

DBSCAN-SWA_4

736267 : 767802

Clostridium_virus(50.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR15436.1\|736267_737452_-\|transposase	transposase-like protein	NA	NA	NA	NA
AWR15437.1\|739300_740161_+	LysR-family transcriptional regulator	NA	NA	NA	NA
AWR15438.1\|740157_740988_+	Beta-lactamase regulatory protein BlaB	NA	NA	NA	NA
AWR15439.1\|741101_742883_+	putative secreted penicillin-binding protein 2	NA	NA	NA	NA
AWR15440.1\|742949_744134_-\|transposase	transposase-like protein	NA	NA	NA	NA
AWR15441.1\|745982_746843_+	LysR-family transcriptional regulator	NA	NA	NA	NA
AWR15442.1\|746839_747670_+	Beta-lactamase regulatory protein BlaB	NA	NA	NA	NA
AWR15443.1\|747783_749565_+	putative secreted penicillin-binding protein 2	NA	NA	NA	NA
AWR15444.1\|749631_750816_-\|transposase	transposase-like protein	NA	NA	NA	NA
AWR15445.1\|751399_752332_+	Abortive infection bacteriophage resistance protein	A3QSC6	Clostridium_virus	3.0e-25	33.1
AWR15446.1\|752467_752779_-	hypothetical protein	NA	NA	NA	NA
AWR15447.1\|753168_754428_-	putative adenosine monophosphate-protein transferase fic	NA	NA	NA	NA
AWR15448.1\|754424_754598_-	hypothetical protein	NA	NA	NA	NA
AWR15449.1\|754684_755059_-	hypothetical protein	NA	NA	NA	NA
AWR15450.1\|755196_755655_-	hypothetical protein	NA	NA	NA	NA
AWR15451.1\|755774_755990_-	hypothetical protein	NA	NA	NA	NA
AWR15452.1\|756041_757514_-	putative regulatory protein	A0A1B3B212	Gordonia_phage	1.8e-43	38.3
AWR15453.1\|757865_758285_+	hypothetical protein	NA	NA	NA	NA
AWR15454.1\|758262_759762_+	hypothetical protein	NA	NA	NA	NA
AWR15455.1\|759785_760649_+	hypothetical protein	NA	NA	NA	NA
AWR15456.1\|760645_761878_+	hypothetical protein	NA	NA	NA	NA
AWR15457.1\|762125_762278_-	hypothetical protein	NA	NA	NA	NA
AWR15458.1\|762490_763087_-	hypothetical protein	NA	NA	NA	NA
AWR15459.1\|763497_763644_+	hypothetical protein	NA	NA	NA	NA
AWR15460.1\|763845_764079_+	hypothetical protein	NA	NA	NA	NA
AWR15461.1\|764456_765665_-\|transposase	transposase	NA	NA	NA	NA
AWR15462.1\|765882_766179_-\|transposase	transposase-like protein	NA	NA	NA	NA
AWR15463.1\|766731_767802_-\|protease	putative protease	NA	NA	NA	NA

DBSCAN-SWA_5

779194 : 788730

Corynebacterium_phage(22.22%)

integrase

attL 770675:770687|attR 786742:786754

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
770675:770687	attL	NA	NA	NA	NA
AWR15474.1\|779194_779884_+	cell division ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-26	37.7
AWR15475.1\|779900_780803_+	cell division protein FtsX	NA	NA	NA	NA
AWR15476.1\|780909_781401_+	tmRNA-binding protein	W5RAM5	Staphylococcus_phage	1.5e-36	52.2
AWR15477.1\|782048_783302_+\|integrase	Putative prophage phiRv2 integrase	G1JV00	Mycobacterium_phage	1.7e-26	27.3
AWR15478.1\|783311_783572_+	hypothetical protein	NA	NA	NA	NA
AWR15479.1\|783544_783697_-	hypothetical protein	NA	NA	NA	NA
AWR15480.1\|783974_784358_-	hypothetical protein	A0A1W6JQ88	Corynebacterium_phage	4.4e-31	51.7
AWR15481.1\|784338_785370_-	putative DNA-binding protein	Q9JMN3	Wolbachia_phage	8.4e-69	44.0
AWR15482.1\|785606_786707_-	hypothetical protein	A0A1S5SAB0	Streptococcus_phage	2.7e-49	34.7
AWR15483.1\|786703_787081_-	hypothetical protein	A0A1P8D5N3	Corynebacterium_phage	6.1e-33	52.9
786742:786754	attR	NA	NA	NA	NA
AWR15484.1\|787093_787585_-	hypothetical protein	A0A0K0N6E3	Gordonia_phage	2.4e-13	37.3
AWR15485.1\|787724_787952_+	hypothetical protein	NA	NA	NA	NA
AWR15486.1\|787980_788730_+	hypothetical protein	A0A139ZPI9	Marinitoga_camini_virus	4.9e-34	37.6

DBSCAN-SWA_6

792465 : 826710

Gordonia_phage(32.14%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR15497.1\|792465_793350_+	putative phage-type endonuclease	A0A160DCV3	Gordonia_phage	1.9e-53	43.0
AWR15498.1\|793360_794212_+	hypothetical protein	A0A2D1GGG2	Gordonia_phage	4.3e-42	48.0
AWR15499.1\|794208_794694_+	single-stranded DNA-binding protein	A0A2I2MPH3	Mycobacterium_phage	1.6e-17	46.0
AWR15500.1\|794713_794845_+	hypothetical protein	NA	NA	NA	NA
AWR15501.1\|794834_795758_+	hypothetical protein	A0A0U4IRC6	Gordonia_phage	1.1e-16	51.1
AWR15502.1\|795754_796174_+	hypothetical protein	D6PG23	uncultured_phage	6.5e-12	38.2
AWR15503.1\|796170_796662_+	hypothetical protein	NA	NA	NA	NA
AWR15504.1\|796654_797251_+	putative low-complexity protein	A0A2H4P8Q0	Corynebacterium_phage	3.3e-17	53.3
AWR15505.1\|797237_797990_+	DNA adenine methyltransferase YhdJ	A0A0K0N5W3	Gordonia_phage	2.3e-108	72.8
AWR15506.1\|797999_798635_+	hypothetical protein	NA	NA	NA	NA
AWR15507.1\|798631_798997_+	hypothetical protein	NA	NA	NA	NA
AWR15508.1\|798997_799666_+	hypothetical protein	NA	NA	NA	NA
AWR15509.1\|799662_799821_+	hypothetical protein	NA	NA	NA	NA
AWR15510.1\|799817_799955_+	hypothetical protein	NA	NA	NA	NA
AWR15511.1\|799951_800143_+	hypothetical protein	NA	NA	NA	NA
AWR15512.1\|800148_800418_+	hypothetical protein	NA	NA	NA	NA
AWR15513.1\|800522_801191_+	Modification methylase DpnIIB	Q855N6	Mycobacterium_virus	1.3e-38	43.8
AWR15514.1\|801261_801447_+	hypothetical protein	NA	NA	NA	NA
AWR15515.1\|801519_802083_+	hypothetical protein	NA	NA	NA	NA
AWR15516.1\|802208_802496_+	hypothetical protein	A0A097EWJ7	Mycobacterium_phage	4.8e-06	38.2
AWR15517.1\|802763_803345_+	hypothetical protein	A0A1D8ETM8	Propionibacterium_phage	6.3e-29	53.1
AWR15518.1\|803304_803721_+	hypothetical protein	A0A162E1R7	Tsukamurella_phage	2.9e-28	48.9
AWR15519.1\|803698_805474_+	hypothetical protein	A0A159B6M5	Tsukamurella_phage	6.5e-186	58.8
AWR15520.1\|805470_806922_+	hypothetical protein	G1BNA4	Mycobacterium_phage	5.0e-75	37.8
AWR15521.1\|806934_808083_+	hypothetical protein	A0A220NQN8	Corynebacterium_phage	2.3e-14	26.4
AWR15522.1\|808072_808324_+	hypothetical protein	NA	NA	NA	NA
AWR15523.1\|808547_809108_+	hypothetical protein	A0A2D1G9N8	Mycobacterium_phage	4.1e-09	51.9
AWR15524.1\|809140_809524_+	hypothetical protein	A0A160DEN0	Gordonia_phage	9.5e-18	44.9
AWR15525.1\|809524_810550_+	hypothetical protein	A0A166XYQ6	Gordonia_phage	2.6e-78	46.2
AWR15526.1\|810566_810791_+	hypothetical protein	NA	NA	NA	NA
AWR15527.1\|810771_811146_+	hypothetical protein	A0A1J0MDW8	Mycobacterium_phage	2.3e-08	39.5
AWR15528.1\|811150_811510_+	hypothetical protein	NA	NA	NA	NA
AWR15529.1\|811513_811690_+	hypothetical protein	NA	NA	NA	NA
AWR15530.1\|811695_811935_+	hypothetical protein	NA	NA	NA	NA
AWR15531.1\|811931_812294_+	hypothetical protein	A0A2D1G9Q5	Mycobacterium_phage	2.7e-06	31.2
AWR15532.1\|812329_813226_+\|tail	phage major tail protein	A0A2H4PEW8	Gordonia_phage	3.6e-23	38.6
AWR15533.1\|813318_813597_+	hypothetical protein	NA	NA	NA	NA
AWR15534.1\|813653_814208_+	hypothetical protein	A0A2H4PEX5	Gordonia_phage	5.4e-06	32.6
AWR15535.1\|814226_819074_+\|tail	minor tail protein Gp26	A0A222ZGU3	Arthrobacter_phage	1.5e-70	60.1
AWR15536.1\|819099_819891_+	hypothetical protein	NA	NA	NA	NA
AWR15537.1\|819881_820778_+	hypothetical protein	A0A1P8D5L4	Corynebacterium_phage	2.4e-27	31.6
AWR15538.1\|820777_821947_+	hypothetical protein	Q37922	Corynephage	5.4e-80	57.4
AWR15539.1\|821946_823374_+	extracellular matrix-binding protein ebhB	A0A1W6JRF8	Corynebacterium_phage	3.7e-46	51.9
AWR15540.1\|823373_824051_+	hypothetical protein	NA	NA	NA	NA
AWR15541.1\|824135_825575_+	putative secreted protein	A0A2P1JY73	Gordonia_phage	3.1e-69	54.1
AWR15542.1\|825577_825901_+	hypothetical protein	NA	NA	NA	NA
AWR15543.1\|825907_826375_+	hypothetical protein	A0A1W6JRF4	Corynebacterium_phage	6.7e-58	75.8
AWR15544.1\|826371_826710_+	hypothetical protein	A0A1W6JRH1	Corynebacterium_phage	1.6e-05	48.1

DBSCAN-SWA_7

1858683 : 1902292

uncultured_virus(15.38%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR16495.1\|1858683_1860033_-\|transposase	transposase	A0A218MNI5	uncultured_virus	1.4e-34	36.6
AWR16496.1\|1860089_1862549_+	putative DNA methyltransferase	Q6NE04	Leptospira_phage	7.5e-156	37.1
AWR16497.1\|1862629_1863979_+\|transposase	transposase	A0A218MNI5	uncultured_virus	1.4e-34	36.6
AWR16498.1\|1864023_1864917_+	Mrr restriction system protein	NA	NA	NA	NA
AWR16499.1\|1865219_1865702_+\|transposase	transposase-like protein	NA	NA	NA	NA
AWR16500.1\|1865767_1866562_+\|transposase	transposase-like protein	A0A1B1P773	Bacillus_phage	1.7e-53	40.4
AWR16501.1\|1866593_1867403_-	Abortive infection bacteriophage resistance protein	A3QSC6	Clostridium_virus	5.5e-23	29.7
AWR16502.1\|1867941_1868775_+	hypothetical protein	NA	NA	NA	NA
AWR16503.1\|1868775_1869459_+	hypothetical protein	NA	NA	NA	NA
AWR16504.1\|1869694_1869934_-	hypothetical protein	NA	NA	NA	NA
AWR16505.1\|1870053_1871220_-	hypothetical protein	NA	NA	NA	NA
AWR16506.1\|1871356_1873204_-	GTP-binding elongation factor	A0A2K9L6L3	Tupanvirus	4.9e-19	37.7
AWR16507.1\|1873527_1874085_+	PemK-like protein	NA	NA	NA	NA
AWR16508.1\|1874245_1874509_+	30S ribosomal protein S20	NA	NA	NA	NA
AWR16509.1\|1874557_1875196_-	threonine efflux protein	NA	NA	NA	NA
AWR16510.1\|1875185_1875632_-	Ankyrin domain-containing protein	NA	NA	NA	NA
AWR16511.1\|1875597_1876572_-	DNA polymerase III subunit delta	NA	NA	NA	NA
AWR16512.1\|1876525_1878199_-	Competence protein ComE-like protein	NA	NA	NA	NA
AWR16513.1\|1878195_1878810_-	putative secreted protein	NA	NA	NA	NA
AWR16514.1\|1878928_1879750_-	degV family protein	NA	NA	NA	NA
AWR16515.1\|1879754_1880477_-	phosphoglycerate mutase	NA	NA	NA	NA
AWR16516.1\|1880483_1880951_-	Protein yqeL	NA	NA	NA	NA
AWR16517.1\|1880973_1881660_-	nicotinic acid mononucleotide adenylyltransferase	NA	NA	NA	NA
AWR16518.1\|1881683_1882976_-	gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	1.3e-82	44.8
AWR16519.1\|1882993_1884124_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	8.1e-57	40.5
AWR16520.1\|1884144_1884396_-	hypothetical protein	NA	NA	NA	NA
AWR16521.1\|1884399_1885926_-	putative GTP-binding protein	NA	NA	NA	NA
AWR16522.1\|1886086_1886353_-	50S ribosomal protein L27	NA	NA	NA	NA
AWR16523.1\|1886393_1886699_-	50S ribosomal protein L21	NA	NA	NA	NA
AWR16524.1\|1886873_1889762_-	ribonuclease E	NA	NA	NA	NA
AWR16525.1\|1890043_1890454_-	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	8.3e-28	46.2
AWR16526.1\|1890645_1891059_-	putative membrane protein	NA	NA	NA	NA
AWR16527.1\|1891055_1892552_-	dihydrofolate synthase / folylpolyglutamate synthase	NA	NA	NA	NA
AWR16528.1\|1892548_1895257_-\|tRNA	valyl-tRNA synthetase	A0A1V0S951	Catovirus	9.4e-136	37.4
AWR16529.1\|1895351_1896332_-	malate dehydrogenase	NA	NA	NA	NA
AWR16530.1\|1896814_1897567_+	TetR family regulatory protein	NA	NA	NA	NA
AWR16531.1\|1897603_1898896_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.3e-131	54.2
AWR16532.1\|1899042_1901568_-	para-aminobenzoate synthase component I	S4VNU7	Pandoravirus	2.1e-65	30.4
AWR16533.1\|1901662_1902292_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	3.6e-38	44.0

DBSCAN-SWA_8

2050739 : 2116499

Tupanvirus(27.27%)

protease,transposase,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR16668.1\|2050739_2052131_-\|tRNA	cysteinyl-tRNA synthetase	A0A2K9L6B7	Tupanvirus	3.7e-43	32.8
AWR16669.1\|2052149_2052632_-	2-C-methyl-D-erythritol 24-cyclodiphosphate synthase	NA	NA	NA	NA
AWR16670.1\|2052624_2053359_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
AWR16671.1\|2053368_2053950_-	putative transcription factor	NA	NA	NA	NA
AWR16672.1\|2054220_2054787_+	Lipoprotein LpqE	NA	NA	NA	NA
AWR16673.1\|2054890_2056360_-	putative secreted protein	NA	NA	NA	NA
AWR16674.1\|2056658_2058050_+	DNA repair protein RadA	NA	NA	NA	NA
AWR16675.1\|2058077_2058794_-	putative secreted protein	NA	NA	NA	NA
AWR16676.1\|2058863_2059493_-	beta-type carbonic anhydrase-like protein	NA	NA	NA	NA
AWR16677.1\|2059625_2060513_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
AWR16678.1\|2060509_2061763_-	Inner membrane protein YjjP	NA	NA	NA	NA
AWR16679.1\|2061893_2062064_-	putative secreted protein	NA	NA	NA	NA
AWR16680.1\|2062094_2064731_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	2.5e-133	40.5
AWR16681.1\|2065179_2065635_-	hypothetical protein	NA	NA	NA	NA
AWR16682.1\|2065670_2066309_+	hypothetical protein	NA	NA	NA	NA
AWR16683.1\|2067225_2068509_-	Thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	6.1e-93	45.4
AWR16684.1\|2068718_2069141_+	Cytidine deaminase	NA	NA	NA	NA
AWR16685.1\|2069144_2070359_+	putative sodium/nucleoside cotransporter	NA	NA	NA	NA
AWR16686.1\|2071448_2073011_-\|tRNA	lysyl-tRNA synthetase	A0A2K9KZX5	Tupanvirus	1.7e-73	37.3
AWR16687.1\|2073477_2075196_+	hypothetical protein	NA	NA	NA	NA
AWR16688.1\|2075192_2076743_+	YcaO-like family protein	NA	NA	NA	NA
AWR16689.1\|2076778_2078263_+	Nitroreductase	NA	NA	NA	NA
AWR16690.1\|2078259_2080860_+	lantibiotic dehydratase domain-containing protein	NA	NA	NA	NA
AWR16691.1\|2080859_2081873_+\|bacteriocin	thiopeptide-type bacteriocin biosynthesis domain protein	NA	NA	NA	NA
AWR16692.1\|2081869_2082847_+\|protease	Zn-dependent protease	NA	NA	NA	NA
AWR16693.1\|2082885_2083056_+	YcaO-like family protein	NA	NA	NA	NA
AWR16694.1\|2083130_2084582_+	YcaO-like family protein	NA	NA	NA	NA
AWR16695.1\|2084601_2085360_-	putative transport permease yvfS	NA	NA	NA	NA
AWR16696.1\|2085356_2086280_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.1e-18	26.7
AWR16697.1\|2086423_2086666_+\|transposase	transposase	NA	NA	NA	NA
AWR16698.1\|2086753_2087722_+\|protease	putative membrane protease subunit	NA	NA	NA	NA
AWR16699.1\|2087721_2087919_+	hypothetical protein	NA	NA	NA	NA
AWR16700.1\|2087968_2089261_+	sodium/dicarboxylate symporter family protein	NA	NA	NA	NA
AWR16701.1\|2089257_2090037_-	pantoate-beta-alanine ligase	NA	NA	NA	NA
AWR16702.1\|2090049_2090673_-	hypothetical protein	NA	NA	NA	NA
AWR16703.1\|2090669_2091578_-	Dihydroneopterin aldolase	NA	NA	NA	NA
AWR16704.1\|2091588_2092056_-	putative secreted protein	NA	NA	NA	NA
AWR16705.1\|2092052_2092532_-	putative 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase	NA	NA	NA	NA
AWR16706.1\|2092541_2092907_-	Dihydroneopterin aldolase	NA	NA	NA	NA
AWR16707.1\|2092912_2093749_-	putative dihydropteroate synthase	S4W084	Pandoravirus	5.3e-21	34.3
AWR16708.1\|2093872_2094187_-	hypothetical protein	NA	NA	NA	NA
AWR16709.1\|2094189_2094762_-	GTP cyclohydrolase I	A0A1W7AF02	Streptococcus_virus	1.7e-47	56.1
AWR16710.1\|2094769_2097235_-	cell division protein	G9E4U6	Ostreococcus_lucimarinus_virus	4.0e-109	41.7
AWR16711.1\|2097366_2097954_-	hypoxanthine-guanine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	5.8e-14	30.8
AWR16712.1\|2097974_2098817_-\|tRNA	tRNA(Ile)-lysidine synthase	NA	NA	NA	NA
AWR16713.1\|2098845_2100096_-	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
AWR16714.1\|2100160_2100637_+	inorganic pyrophosphatase	NA	NA	NA	NA
AWR16715.1\|2100795_2101092_+	Rhodanese-related sulfurtransferase	A0A2H4PQR9	Staphylococcus_phage	4.3e-10	40.5
AWR16716.1\|2101133_2101628_+	multiple antibiotic resistance protein	NA	NA	NA	NA
AWR16717.1\|2101628_2105432_+	tyrocidine synthetase 3	A0A2K9KZV5	Tupanvirus	2.7e-40	28.0
AWR16718.1\|2105428_2111047_-	putative surface-anchored fimbrial subunit	NA	NA	NA	NA
AWR16719.1\|2111050_2111680_-	putative surface-anchored fimbrial subunit	NA	NA	NA	NA
AWR16720.1\|2111669_2112539_-	putative fimbrial associated sortase-like protein	NA	NA	NA	NA
AWR16721.1\|2112539_2114117_-	putative surface-anchored fimbrial subunit	NA	NA	NA	NA
AWR16722.1\|2114349_2115147_+	putative surface-exposed virulence protein bigA	NA	NA	NA	NA
AWR16723.1\|2115090_2115204_-	hypothetical protein	NA	NA	NA	NA
AWR16724.1\|2115551_2116499_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_9

2123014 : 2175865

Gordonia_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWR16732.1\|2123014_2123350_-\|transposase	transposase-like protein	NA	NA	NA	NA
AWR16733.1\|2123622_2123829_+\|transposase	putative transposase for insertion element	NA	NA	NA	NA
AWR16734.1\|2124189_2124630_+\|transposase	putative transposase for insertion element	NA	NA	NA	NA
AWR16735.1\|2124632_2124848_+\|transposase	transposase-like protein	Q9MBM9	Staphylococcus_prophage	1.4e-13	51.6
AWR16736.1\|2125109_2125808_+	20kD antigen	NA	NA	NA	NA
AWR16737.1\|2127515_2127656_-\|transposase	transposase-like protein	NA	NA	NA	NA
AWR16738.1\|2127809_2128154_+\|transposase	transposase-like protein	NA	NA	NA	NA
AWR16739.1\|2128140_2128269_+	hypothetical protein	NA	NA	NA	NA
AWR16740.1\|2130636_2130750_-	hypothetical protein	NA	NA	NA	NA
AWR16741.1\|2130916_2131117_+	hypothetical protein	NA	NA	NA	NA
AWR16742.1\|2131075_2132425_-\|transposase	transposase	A0A218MNI5	uncultured_virus	1.4e-34	36.6
AWR16743.1\|2132618_2132834_-	hypothetical protein	NA	NA	NA	NA
AWR16744.1\|2133069_2134443_+	thiol precursor dipeptidase	NA	NA	NA	NA
AWR16745.1\|2134477_2135791_+	putative membrane protein	NA	NA	NA	NA
AWR16746.1\|2135733_2136813_-	putative carboxylate-amine ligase	NA	NA	NA	NA
AWR16747.1\|2136809_2137319_-	putative secreted protein	NA	NA	NA	NA
AWR16748.1\|2137562_2138126_+	peptide deformylase	A0A2I7R224	Vibrio_phage	1.4e-12	38.2
AWR16749.1\|2138142_2139030_+	Acetyltransferase	NA	NA	NA	NA
AWR16750.1\|2139034_2139742_+	exodeoxyribonuclease III	NA	NA	NA	NA
AWR16751.1\|2139738_2141172_+	cardiolipin synthase	NA	NA	NA	NA
AWR16752.1\|2141885_2142623_-	ABC transporter permease protein	NA	NA	NA	NA
AWR16753.1\|2142606_2143503_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.3e-30	37.7
AWR16754.1\|2143537_2144794_+	phenol hydroxylase P5 protein	NA	NA	NA	NA
AWR16755.1\|2144790_2145738_+	putative extracellulare solute-binding protein	NA	NA	NA	NA
AWR16756.1\|2145734_2147897_+	serine/threonine-protein kinase	A0A1V0SBL0	Catovirus	3.5e-08	24.5
AWR16757.1\|2147916_2149116_-	acetate kinase	NA	NA	NA	NA
AWR16758.1\|2149116_2150496_-	phosphotransacetylase	NA	NA	NA	NA
AWR16759.1\|2150746_2152105_+	putative ferredoxin/ferredoxin-NADP reductase	NA	NA	NA	NA
AWR16760.1\|2152116_2153013_-	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AWR16761.1\|2153044_2153545_+	putative purine phosphoribosyltransferase	NA	NA	NA	NA
AWR16762.1\|2153576_2154464_+	hypothetical protein	NA	NA	NA	NA
AWR16763.1\|2154460_2155891_-	disulfide bond formation protein	NA	NA	NA	NA
AWR16764.1\|2155891_2156059_-	putative secreted protein	NA	NA	NA	NA
AWR16765.1\|2156273_2157563_-	adenylosuccinate synthetase	A0A160ER07	Powai_lake_megavirus	1.5e-67	35.4
AWR16766.1\|2157657_2157867_+	putative beta-ketoacyl-ACP synthase	NA	NA	NA	NA
AWR16767.1\|2158200_2159037_+	hypothetical protein	NA	NA	NA	NA
AWR16768.1\|2159033_2160161_-	putative membrane protein	NA	NA	NA	NA
AWR16769.1\|2160274_2161408_+	putative secreted protein	NA	NA	NA	NA
AWR16770.1\|2161499_2162624_-	putative membrane protein	NA	NA	NA	NA
AWR16771.1\|2163092_2164004_+	hypothetical protein	NA	NA	NA	NA
AWR16772.1\|2164316_2165348_+	hypothetical protein	NA	NA	NA	NA
AWR16773.1\|2167516_2168113_+	hypothetical protein	NA	NA	NA	NA
AWR16774.1\|2168176_2168275_-	hypothetical protein	NA	NA	NA	NA
AWR16775.1\|2168323_2171098_-	putative DNA methyltransferase	Q6NE04	Leptospira_phage	8.4e-156	36.9
AWR16776.1\|2171185_2172190_+\|transposase	transposase-like protein	A0A220NQR7	Corynebacterium_phage	9.7e-70	41.6
AWR16777.1\|2172694_2173417_-	hypothetical protein	NA	NA	NA	NA
AWR16778.1\|2173606_2174422_-\|transposase	transposase-like protein	A0A1B3AZE5	Gordonia_phage	2.6e-41	40.0
AWR16779.1\|2174421_2174736_-\|transposase	transposase-like protein	A0A1B3AZF8	Gordonia_phage	6.0e-10	39.2
AWR16780.1\|2174788_2174986_+\|transposase	transposase	NA	NA	NA	NA
AWR16781.1\|2174985_2175324_+\|transposase	transposase-like protein	NA	NA	NA	NA
AWR16782.1\|2175310_2175865_+\|transposase	transposase-like protein	A0A1P8CWQ3	Bacillus_phage	2.9e-23	37.1

DBSCAN-SWA_10

2206624 : 2223218

Enterobacteria_phage(16.67%)