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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029663 Staphylococcus aureus strain AR_0228 chromosome, complete genome 9 crisprs cas3,DinG,DEDDh,csa3,RT,WYL 7 4 12 1
CP029661 Staphylococcus aureus strain AR_0228 plasmid unnamed1, complete sequence 0 crisprs csa3 0 0 0 0
CP029662 Staphylococcus aureus strain AR_0228 plasmid unnamed2, complete sequence 0 crisprs csa3 0 0 0 0

Results visualization

1. CP029663
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_1 425064-425165 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_2 661559-661649 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_3 821203-821281 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_4 826658-826927 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_5 869939-870020 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_6 1211618-1211698 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_7 2138136-2138217 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_8 2267380-2267460 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029663_10 2387731-2387811 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 186967-186988 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 310031-310052 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 653304-653325 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 870012-870033 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 1231510-1231531 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 1429085-1429106 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 1519151-1519172 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 2037253-2037274 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 186967-186988 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 310031-310052 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 653304-653325 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 870012-870033 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 1231510-1231531 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 1429085-1429106 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 1519151-1519172 0 1.0
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 2037253-2037274 0 1.0
CP029663_7 7.1|2138160|34|CP029663|CRISPRCasFinder 2138160-2138193 34 CP029663.1 821202-821235 0 1.0
CP029663_7 7.1|2138160|34|CP029663|CRISPRCasFinder 2138160-2138193 34 CP029663.1 1730845-1730878 0 1.0
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 1211782-1211803 1 0.955
CP029663_4 4.1|826694|22|CP029663|CRT 826694-826715 22 CP029663.1 1923762-1923783 1 0.955
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 CP029663.1 1246044-1246066 1 0.957
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 CP029663.1 1519034-1519056 1 0.957
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 CP029663.1 2037311-2037333 1 0.957
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 CP029663.1 2376902-2376924 1 0.957
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 1211782-1211803 1 0.955
CP029663_4 4.3|826811|22|CP029663|CRT 826811-826832 22 CP029663.1 1923762-1923783 1 0.955
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 CP029663.1 1246044-1246066 1 0.957
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 CP029663.1 1519034-1519056 1 0.957
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 CP029663.1 2037311-2037333 1 0.957
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 CP029663.1 2376902-2376924 1 0.957
CP029663_5 5.1|869963|34|CP029663|CRISPRCasFinder 869963-869996 34 CP029663.1 1519043-1519076 1 0.971
CP029663_7 7.1|2138160|34|CP029663|CRISPRCasFinder 2138160-2138193 34 CP029663.1 1119523-1119556 1 0.971
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 833946-833976 1 0.968
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 834002-834032 1 0.968
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 CP029663.1 1429201-1429223 2 0.913
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 CP029663.1 2138217-2138239 2 0.913
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 CP029663.1 1429201-1429223 2 0.913
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 CP029663.1 2138217-2138239 2 0.913
CP029663_7 7.1|2138160|34|CP029663|CRISPRCasFinder 2138160-2138193 34 CP029663.1 1514669-1514702 2 0.941
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 88324-88354 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 386329-386359 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 653359-653389 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 834058-834088 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 870275-870305 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 1231447-1231477 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 1429024-1429054 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 1429140-1429170 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 1519087-1519117 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 1725250-1725280 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 1827774-1827804 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 2035905-2035935 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 2376955-2376985 2 0.935
CP029663_10 10.1|2387756|31|CP029663|CRISPRCasFinder 2387756-2387786 31 CP029663.1 2552538-2552568 2 0.935

1. spacer 4.1|826694|22|CP029663|CRT matches to position: 186967-186988, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

2. spacer 4.1|826694|22|CP029663|CRT matches to position: 310031-310052, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|826694|22|CP029663|CRT matches to position: 653304-653325, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|826694|22|CP029663|CRT matches to position: 870012-870033, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|826694|22|CP029663|CRT matches to position: 1231510-1231531, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|826694|22|CP029663|CRT matches to position: 1429085-1429106, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|826694|22|CP029663|CRT matches to position: 1519151-1519172, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|826694|22|CP029663|CRT matches to position: 2037253-2037274, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.3|826811|22|CP029663|CRT matches to position: 186967-186988, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.3|826811|22|CP029663|CRT matches to position: 310031-310052, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.3|826811|22|CP029663|CRT matches to position: 653304-653325, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.3|826811|22|CP029663|CRT matches to position: 870012-870033, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.3|826811|22|CP029663|CRT matches to position: 1231510-1231531, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.3|826811|22|CP029663|CRT matches to position: 1429085-1429106, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|826811|22|CP029663|CRT matches to position: 1519151-1519172, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|826811|22|CP029663|CRT matches to position: 2037253-2037274, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 7.1|2138160|34|CP029663|CRISPRCasFinder matches to position: 821202-821235, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

18. spacer 7.1|2138160|34|CP029663|CRISPRCasFinder matches to position: 1730845-1730878, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

19. spacer 4.1|826694|22|CP029663|CRT matches to position: 1211782-1211803, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

20. spacer 4.1|826694|22|CP029663|CRT matches to position: 1923762-1923783, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

21. spacer 4.2|826752|23|CP029663|CRT matches to position: 1246044-1246066, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

22. spacer 4.2|826752|23|CP029663|CRT matches to position: 1519034-1519056, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

23. spacer 4.2|826752|23|CP029663|CRT matches to position: 2037311-2037333, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

24. spacer 4.2|826752|23|CP029663|CRT matches to position: 2376902-2376924, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

25. spacer 4.3|826811|22|CP029663|CRT matches to position: 1211782-1211803, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

26. spacer 4.3|826811|22|CP029663|CRT matches to position: 1923762-1923783, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

27. spacer 4.4|826869|23|CP029663|CRT matches to position: 1246044-1246066, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

28. spacer 4.4|826869|23|CP029663|CRT matches to position: 1519034-1519056, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

29. spacer 4.4|826869|23|CP029663|CRT matches to position: 2037311-2037333, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

30. spacer 4.4|826869|23|CP029663|CRT matches to position: 2376902-2376924, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

31. spacer 5.1|869963|34|CP029663|CRISPRCasFinder matches to position: 1519043-1519076, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

32. spacer 7.1|2138160|34|CP029663|CRISPRCasFinder matches to position: 1119523-1119556, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

33. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 833946-833976, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

34. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 834002-834032, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

35. spacer 4.2|826752|23|CP029663|CRT matches to position: 1429201-1429223, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

36. spacer 4.2|826752|23|CP029663|CRT matches to position: 2138217-2138239, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

37. spacer 4.4|826869|23|CP029663|CRT matches to position: 1429201-1429223, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

38. spacer 4.4|826869|23|CP029663|CRT matches to position: 2138217-2138239, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

39. spacer 7.1|2138160|34|CP029663|CRISPRCasFinder matches to position: 1514669-1514702, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

40. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 88324-88354, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

41. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 386329-386359, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

42. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 653359-653389, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

43. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 834058-834088, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

44. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 870275-870305, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

45. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 1231447-1231477, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

46. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 1429024-1429054, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

47. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 1429140-1429170, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

48. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 1519087-1519117, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

49. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 1725250-1725280, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

50. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 1827774-1827804, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

51. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 2035905-2035935, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

52. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 2376955-2376985, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

53. spacer 10.1|2387756|31|CP029663|CRISPRCasFinder matches to position: 2552538-2552568, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
CP029663_4 4.2|826752|23|CP029663|CRT 826752-826774 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
CP029663_4 4.4|826869|23|CP029663|CRT 826869-826891 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
CP029663_2 2.1|661589|31|CP029663|CRISPRCasFinder 661589-661619 31 NZ_LR135334 Enterococcus faecium isolate E7471 plasmid 4 57039-57069 8 0.742
CP029663_2 2.1|661589|31|CP029663|CRISPRCasFinder 661589-661619 31 NZ_LR135205 Enterococcus faecium isolate E7171 plasmid 3 1277-1307 8 0.742
CP029663_9 9.1|2279727|34|CP029663|CRISPRCasFinder 2279727-2279760 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
CP029663_9 9.1|2279727|34|CP029663|CRISPRCasFinder 2279727-2279760 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|826752|23|CP029663|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|826752|23|CP029663|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|826869|23|CP029663|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|826869|23|CP029663|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 2.1|661589|31|CP029663|CRISPRCasFinder matches to NZ_LR135334 (Enterococcus faecium isolate E7471 plasmid 4) position: , mismatch: 8, identity: 0.742

gtgaagaggaacgcagttggatgctaaggca	CRISPR spacer
ctttagaagaacgcagtttgatgctaattta	Protospacer
 *  ***.********** ********  .*

6. spacer 2.1|661589|31|CP029663|CRISPRCasFinder matches to NZ_LR135205 (Enterococcus faecium isolate E7171 plasmid 3) position: , mismatch: 8, identity: 0.742

gtgaagaggaacgcagttggatgctaaggca	CRISPR spacer
ctttagaagaacgcagtttgatgctaattta	Protospacer
 *  ***.********** ********  .*

7. spacer 9.1|2279727|34|CP029663|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

8. spacer 9.1|2279727|34|CP029663|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12282 : 59534 47 Streptococcus_phage(27.27%) integrase,transposase,tRNA attL 29530:29544|attR 67556:67570
DBSCAN-SWA_2 658864 : 715199 59 Planktothrix_phage(25.0%) integrase,transposase,tRNA attL 668153:668172|attR 720627:720646
DBSCAN-SWA_3 759793 : 767614 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_4 779585 : 791200 9 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_5 878350 : 951701 101 Staphylococcus_phage(71.25%) portal,integrase,holin,terminase,transposase,protease,tail,capsid,head attL 871801:871816|attR 927070:927085
DBSCAN-SWA_6 957058 : 1057549 95 Staphylococcus_phage(87.72%) integrase,transposase,tRNA,protease attL 997377:997393|attR 1032587:1032603
DBSCAN-SWA_7 1108005 : 1177225 60 Staphylococcus_phage(15.38%) integrase,transposase,tRNA,protease attL 1103275:1103292|attR 1177181:1177198
DBSCAN-SWA_8 1187486 : 1196529 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_9 1437217 : 1472187 35 Moraxella_phage(11.11%) lysis,transposase,protease NA
DBSCAN-SWA_10 1817820 : 1826230 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_11 1972842 : 2029193 84 Staphylococcus_phage(67.61%) portal,integrase,terminase,transposase,capsid,protease,tail,holin,head attL 2006910:2006927|attR 2034018:2034035
DBSCAN-SWA_12 2090315 : 2136256 68 Staphylococcus_phage(95.59%) portal,integrase,capsid,protease,tail,holin,head attL 2109743:2109760|attR 2134240:2134257
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
CP029663.1|AWQ69289.1|1154300_1154909_+|hypothetical-protein 1154300_1154909_+ 202 aa aa NA NA NA 1108005-1177225 yes