CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029670	Staphylococcus aureus strain AR_0222 plasmid unnamed1, complete sequence	0 crisprs	csa3	0	0	0	0
CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	7 crisprs	cas3,WYL,RT,csa3,DEDDh,DinG	6	2	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029671_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029671_1

596307-596388

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029671_1

>merge|CP029671|1|596307-596388|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCTCAATTTCTACAGACAATGCAAGTTGGGG

>CP029671|1|1|596307-596388|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP029671.1\|AWQ77478.1\|593744_594770_-\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP029671.1\|AWQ76885.1\|593056_593710_-\|methionine-import-system-permease-protein-MetP	unknown	unknown	gnl\|CDD\|224922
CP029671.1\|AWQ76323.1\|588090_589398_-\|feS-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP029671.1\|AWQ77522.1\|592217_593039_-\|NLPA-lipofamily-protein	unknown	unknown	gnl\|CDD\|224381
CP029671.1\|AWQ78038.1\|597548_597929_-\|glycine-cleavage-system-H-protein	unknown	unknown	gnl\|CDD\|234918
CP029671.1\|AWQ78255.1\|590584_591433_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224946
CP029671.1\|AWQ76853.1\|595019_595316_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029671.1\|AWQ78438.1\|589495_590257_-\|feS-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
CP029671.1\|AWQ76193.1\|600543_600966_+\|peroxiredoxin,-Ohr-subfamily-protein	unknown	unknown	gnl\|CDD\|274649
CP029671.1\|AWQ76388.1\|586734_587976_-\|putative-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
CP029671.1\|AWQ77477.1\|597371_597485_-\|hypothetical-protein	unknown	unknown	unknown
CP029671.1\|AWQ76591.1\|598086_598443_-\|transcriptional-regulator,-Spx/MgsR-family-protein	unknown	unknown	gnl\|CDD\|239334
CP029671.1\|AWQ77043.1\|598586_598907_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
CP029671.1\|AWQ76245.1\|599057_599597_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380312
CP029671.1\|AWQ78315.1\|602013_602631_+\|lysE-type-translocator-family-protein	unknown	unknown	gnl\|CDD\|224198
CP029671.1\|AWQ76459.1\|591669_591864_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225777
CP029671.1\|AWQ78251.1\|599679_600396_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
CP029671.1\|AWQ77564.1\|595308_595695_-\|toprim-domain-protein	unknown	unknown	gnl\|CDD\|224572
CP029671.1\|AWQ77570.1\|601364_601859_+\|acetyltransferase-domain-protein	unknown	unknown	gnl\|CDD\|372596
CP029671.1\|AWQ78241.1\|596491_597370_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226395

Protein	Function_ID	Function_description	E-value
CP029671.1\|AWQ77478.1\|593744_594770_-\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.03316e-170
CP029671.1\|AWQ76885.1\|593056_593710_-\|methionine-import-system-permease-protein-MetP	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	8.5871e-98
CP029671.1\|AWQ76323.1\|588090_589398_-\|feS-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.36148e-135
CP029671.1\|AWQ77522.1\|592217_593039_-\|NLPA-lipofamily-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.02861e-112
CP029671.1\|AWQ78038.1\|597548_597929_-\|glycine-cleavage-system-H-protein	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
CP029671.1\|AWQ78255.1\|590584_591433_+\|hypothetical-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	3.4953e-76
CP029671.1\|AWQ76853.1\|595019_595316_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP029671.1\|AWQ78438.1\|589495_590257_-\|feS-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
CP029671.1\|AWQ76193.1\|600543_600966_+\|peroxiredoxin,-Ohr-subfamily-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	8.65844e-60
CP029671.1\|AWQ76388.1\|586734_587976_-\|putative-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP029671.1\|AWQ76591.1\|598086_598443_-\|transcriptional-regulator,-Spx/MgsR-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP029671.1\|AWQ77043.1\|598586_598907_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.4922e-24
CP029671.1\|AWQ76245.1\|599057_599597_-\|nitroreductase-family-protein	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
CP029671.1\|AWQ78315.1\|602013_602631_+\|lysE-type-translocator-family-protein	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.60719e-61
CP029671.1\|AWQ76459.1\|591669_591864_-\|hypothetical-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
CP029671.1\|AWQ78251.1\|599679_600396_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	3.2619e-146
CP029671.1\|AWQ77564.1\|595308_595695_-\|toprim-domain-protein	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP029671.1\|AWQ77570.1\|601364_601859_+\|acetyltransferase-domain-protein	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP029671.1\|AWQ78241.1\|596491_597370_-\|hypothetical-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	3.13065e-77

>CP029671.1|AWQ77564.1|595308_595695_-|toprim-domain-protein
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP029671.1|AWQ76853.1|595019_595316_-|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP029671.1|AWQ77478.1|593744_594770_-|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTVTKRFVKEDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP029671.1|AWQ76885.1|593056_593710_-|methionine-import-system-permease-protein-MetP
MPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWIVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP029671.1|AWQ77522.1|592217_593039_-|NLPA-lipofamily-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYDLDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP029671.1|AWQ76459.1|591669_591864_-|hypothetical-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>CP029671.1|AWQ78255.1|590584_591433_+|hypothetical-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFTGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAEN
>CP029671.1|AWQ78438.1|589495_590257_-|feS-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>CP029671.1|AWQ76323.1|588090_589398_-|feS-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKHFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDKNASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>CP029671.1|AWQ76388.1|586734_587976_-|putative-cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDIDQLINALKQTKEFFSYEF
>CP029671.1|AWQ78241.1|596491_597370_-|hypothetical-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP029671.1|AWQ77477.1|597371_597485_-|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>CP029671.1|AWQ78038.1|597548_597929_-|glycine-cleavage-system-H-protein
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>CP029671.1|AWQ76591.1|598086_598443_-|transcriptional-regulator,-Spx/MgsR-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP029671.1|AWQ77043.1|598586_598907_+|thioredoxin-family-protein
MQAIKSNESFKSIINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP029671.1|AWQ76245.1|599057_599597_-|nitroreductase-family-protein
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>CP029671.1|AWQ78251.1|599679_600396_-|3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFINDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIIKHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>CP029671.1|AWQ76193.1|600543_600966_+|peroxiredoxin,-Ohr-subfamily-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGVFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP029671.1|AWQ77570.1|601364_601859_+|acetyltransferase-domain-protein
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP029671.1|AWQ78315.1|602013_602631_+|lysE-type-translocator-family-protein
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIISPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF

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Crispr_ID: CP029671_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029671_2

661289-661367

Unclear

Consensus_repeat	Method
AGAATTTCGAAAAGAAATTCTACA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of CP029671_2

>merge|CP029671|2|661289-661367|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTGGCGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACA

>CP029671|2|2|661289-661367|CRISPRCasFinder
AGAATTTCGAAAAGAAATTCTACA	GGCAATGCAAGTTGGCGGGGCCCCAACACAG
AGAATTTCGAAAAGAAATTCTACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029671.1\|AWQ76948.1\|653521_654517_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP029671.1\|AWQ77671.1\|667034_667685_-\|HD-containing-hydrolase-like-enzyme-family-protein	unknown	unknown	gnl\|CDD\|378993
CP029671.1\|AWQ76069.1\|660097_661030_-\|HPr(Ser)-kinase/phosphatase	unknown	unknown	gnl\|CDD\|235459
CP029671.1\|AWQ77488.1\|669106_670099_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP029671.1\|AWQ76127.1\|674109_674784_-\|putative-amidophosphoribosyltransferase,-ComFC	unknown	unknown	gnl\|CDD\|223970
CP029671.1\|AWQ76750.1\|657312_658752_-\|tetratricopeptide-repeat-family-protein	unknown	unknown	gnl\|CDD\|276808
CP029671.1\|AWQ78183.1\|659252_660092_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP029671.1\|AWQ76940.1\|670531_673063_-\|preprotein-translocase,-SecA-subunit	unknown	unknown	gnl\|CDD\|237259
CP029671.1\|AWQ77982.1\|667858_668698_-\|staphyloxanthin-biosynthesis-protein,-putative	unknown	unknown	gnl\|CDD\|226451
CP029671.1\|AWQ77621.1\|654513_655425_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224574
CP029671.1\|AWQ77904.1\|658759_659245_-\|bacterial-transferase-hexapeptide-family-protein	unknown	unknown	gnl\|CDD\|100053
CP029671.1\|AWQ77751.1\|652466_653411_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	unknown	unknown	gnl\|CDD\|273194
CP029671.1\|AWQ76908.1\|656310_657246_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP029671.1\|AWQ77340.1\|674776_675859_-\|DEAD/DEAH-box-helicase-family-protein	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|226583
CP029671.1\|AWQ76789.1\|651315_651903_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
CP029671.1\|AWQ78115.1\|673476_674049_-\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP029671.1\|AWQ77407.1\|650170_651073_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|224015
CP029671.1\|AWQ77690.1\|661693_664540_-\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP029671.1\|AWQ77759.1\|664547_666533_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP029671.1\|AWQ78483.1\|666801_667038_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227234

Protein	Function_ID	Function_description	E-value
CP029671.1\|AWQ76948.1\|653521_654517_-\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP029671.1\|AWQ77671.1\|667034_667685_-\|HD-containing-hydrolase-like-enzyme-family-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP029671.1\|AWQ76069.1\|660097_661030_-\|HPr(Ser)-kinase/phosphatase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP029671.1\|AWQ77488.1\|669106_670099_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP029671.1\|AWQ76127.1\|674109_674784_-\|putative-amidophosphoribosyltransferase,-ComFC	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.0058e-51
CP029671.1\|AWQ76750.1\|657312_658752_-\|tetratricopeptide-repeat-family-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.14043e-06
CP029671.1\|AWQ78183.1\|659252_660092_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.75588e-120
CP029671.1\|AWQ76940.1\|670531_673063_-\|preprotein-translocase,-SecA-subunit	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP029671.1\|AWQ77982.1\|667858_668698_-\|staphyloxanthin-biosynthesis-protein,-putative	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.97111e-42
CP029671.1\|AWQ77621.1\|654513_655425_-\|hypothetical-protein	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP029671.1\|AWQ77904.1\|658759_659245_-\|bacterial-transferase-hexapeptide-family-protein	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP029671.1\|AWQ77751.1\|652466_653411_-\|sporulation-Regulator-WhiA-C-terminal-domain-protein	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP029671.1\|AWQ76908.1\|656310_657246_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP029671.1\|AWQ77340.1\|674776_675859_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226583	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].	1.70203e-180
CP029671.1\|AWQ76789.1\|651315_651903_-\|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP029671.1\|AWQ78115.1\|673476_674049_-\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP029671.1\|AWQ77407.1\|650170_651073_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	6.73087e-155
CP029671.1\|AWQ77690.1\|661693_664540_-\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP029671.1\|AWQ77759.1\|664547_666533_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP029671.1\|AWQ78483.1\|666801_667038_-\|hypothetical-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34

>CP029671.1|AWQ76069.1|660097_661030_-|HPr(Ser)-kinase/phosphatase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP029671.1|AWQ78183.1|659252_660092_-|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP029671.1|AWQ77904.1|658759_659245_-|bacterial-transferase-hexapeptide-family-protein
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP029671.1|AWQ76750.1|657312_658752_-|tetratricopeptide-repeat-family-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYQNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP029671.1|AWQ76908.1|656310_657246_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP029671.1|AWQ77621.1|654513_655425_-|hypothetical-protein
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP029671.1|AWQ76948.1|653521_654517_-|hypothetical-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP029671.1|AWQ77751.1|652466_653411_-|sporulation-Regulator-WhiA-C-terminal-domain-protein
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP029671.1|AWQ76789.1|651315_651903_-|ATP-dependent-Clp-endopeptidase,-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP029671.1|AWQ77407.1|650170_651073_+|NAD-dependent-epimerase/dehydratase-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGMILSNEGGALQTMKLPYKYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP029671.1|AWQ77690.1|661693_664540_-|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIDVPEYRRPASDRKISIRGARSNNLKGIDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP029671.1|AWQ77759.1|664547_666533_-|excinuclease-ABC-subunit-B
MVEHYPFKIHSDFEPQGDQPQAIKEIVDGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP029671.1|AWQ78483.1|666801_667038_-|hypothetical-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP029671.1|AWQ77671.1|667034_667685_-|HD-containing-hydrolase-like-enzyme-family-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP029671.1|AWQ77982.1|667858_668698_-|staphyloxanthin-biosynthesis-protein,-putative
MKKTLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVAKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP029671.1|AWQ77488.1|669106_670099_-|peptide-chain-release-factor-2
MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP029671.1|AWQ76940.1|670531_673063_-|preprotein-translocase,-SecA-subunit
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP029671.1|AWQ78115.1|673476_674049_-|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP029671.1|AWQ76127.1|674109_674784_-|putative-amidophosphoribosyltransferase,-ComFC
MNNCLSCGAKLYENITIYNLFKKPNRLCDRCKENWDNIKLDIKARRCSRCLKHLNQDEAYCLDCKFLSAHFNLMEQLYCQFQYDGLMKEMIHQYKFLKDYYLCELLAHLIEIPQTSYDYIVPIPSSPAHDLSRTFNPVEAVLKAKGIRFDKILKMSNRPKQSHLTKKERLADENPFIIDTELDLNGKEILLVDDIYTTGLTIHRAGCKLYAKNIRKFKVFAFAR
>CP029671.1|AWQ77340.1|674776_675859_-|DEAD/DEAH-box-helicase-family-protein
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVSPRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSKVEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETMIKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKLECPAGKVLFFHEGVSMNMIQAKKEIQRMNKLALKRGWIDE

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Crispr_ID: CP029671_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029671_3

1057506-1057608

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029671_3

>merge|CP029671|3|1057506-1057608|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>CP029671|3|3|1057506-1057608|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029671.1\|AWQ76211.1\|1059934_1060690_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP029671.1\|AWQ77534.1\|1065078_1065660_-\|histidine-phosphatase-super-family-protein	unknown	unknown	gnl\|CDD\|223483
CP029671.1\|AWQ76783.1\|1049124_1049661_+\|hypothetical-protein	unknown	unknown	unknown
CP029671.1\|AWQ78093.1\|1064629_1065013_+\|putative-membrane-protein	unknown	unknown	unknown
CP029671.1\|AWQ76279.1\|1052843_1054112_-\|xanthine-permease-family-protein	unknown	unknown	gnl\|CDD\|274468
CP029671.1\|AWQ76118.1\|1049773_1051315_-\|GMP-synthase	unknown	unknown	gnl\|CDD\|234614
CP029671.1\|AWQ76954.1\|1061766_1063290_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP029671.1\|AWQ77388.1\|1051339_1052806_-\|inosine-5'-monophosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP029671.1\|AWQ76456.1\|1054111_1054690_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP029671.1\|AWQ77381.1\|1061181_1061751_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP029671.1\|AWQ77858.1\|1048028_1048733_+\|pemK-like-family-protein	unknown	unknown	gnl\|CDD\|367091
CP029671.1\|AWQ76852.1\|1055752_1056415_+\|hypothetical-protein	unknown	unknown	unknown
CP029671.1\|AWQ76871.1\|1066085_1066337_-\|transglycosylase-associated-family-protein	unknown	unknown	gnl\|CDD\|225170
CP029671.1\|AWQ78174.1\|1047402_1047630_+\|putative-transposase	unknown	unknown	unknown
CP029671.1\|AWQ77779.1\|1066636_1066900_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238045
CP029671.1\|AWQ77036.1\|1063469_1063661_+\|hypothetical-protein	unknown	unknown	unknown
CP029671.1\|AWQ77104.1\|1055202_1055610_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP029671.1\|AWQ77895.1\|1058466_1059855_+\|L-cystine-uptake-protein-TcyP	unknown	unknown	gnl\|CDD\|224736
CP029671.1\|AWQ76266.1\|1063733_1064360_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380196
CP029671.1\|AWQ76368.1\|1056532_1057489_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334

Protein	Function_ID	Function_description	E-value
CP029671.1\|AWQ76211.1\|1059934_1060690_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	4.50551e-88
CP029671.1\|AWQ76279.1\|1052843_1054112_-\|xanthine-permease-family-protein	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.74823e-170
CP029671.1\|AWQ76118.1\|1049773_1051315_-\|GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP029671.1\|AWQ76954.1\|1061766_1063290_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP029671.1\|AWQ77388.1\|1051339_1052806_-\|inosine-5'-monophosphate-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP029671.1\|AWQ76456.1\|1054111_1054690_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP029671.1\|AWQ77858.1\|1048028_1048733_+\|pemK-like-family-protein	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	5.38181e-08
CP029671.1\|AWQ76871.1\|1066085_1066337_-\|transglycosylase-associated-family-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.58864e-09
CP029671.1\|AWQ77381.1\|1061181_1061751_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP029671.1\|AWQ77779.1\|1066636_1066900_+\|hypothetical-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.0037414
CP029671.1\|AWQ77534.1\|1065078_1065660_-\|histidine-phosphatase-super-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.4566e-49
CP029671.1\|AWQ77104.1\|1055202_1055610_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.17298e-12
CP029671.1\|AWQ77895.1\|1058466_1059855_+\|L-cystine-uptake-protein-TcyP	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP029671.1\|AWQ76266.1\|1063733_1064360_+\|hypothetical-protein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.15385e-71
CP029671.1\|AWQ76368.1\|1056532_1057489_+\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.00144907

>CP029671.1|AWQ76368.1|1056532_1057489_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQAAQASQAKVLAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNENAAETSNKEATVDADAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP029671.1|AWQ76852.1|1055752_1056415_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP029671.1|AWQ77104.1|1055202_1055610_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHKEVQEHNSAYEEIDITHFAEASKGPKA
>CP029671.1|AWQ76456.1|1054111_1054690_-|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP029671.1|AWQ76279.1|1052843_1054112_-|xanthine-permease-family-protein
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILVLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP029671.1|AWQ77388.1|1051339_1052806_-|inosine-5'-monophosphate-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP029671.1|AWQ76118.1|1049773_1051315_-|GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCKGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP029671.1|AWQ76783.1|1049124_1049661_+|hypothetical-protein
MHNKNEFNKKLKDFIGSDKRMALVKGYINEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNKIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP029671.1|AWQ77858.1|1048028_1048733_+|pemK-like-family-protein
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSFSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALTQKYRDIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP029671.1|AWQ78174.1|1047402_1047630_+|putative-transposase
MVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
>CP029671.1|AWQ77895.1|1058466_1059855_+|L-cystine-uptake-protein-TcyP
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLVYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFESNDNAALTSH
>CP029671.1|AWQ76211.1|1059934_1060690_-|NADPH-dependent-oxidoreductase
MSDYVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP029671.1|AWQ77381.1|1061181_1061751_+|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP029671.1|AWQ76954.1|1061766_1063290_+|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP029671.1|AWQ77036.1|1063469_1063661_+|hypothetical-protein
MNEIIMLLRTIPTSKLIQPIMQLFIDNAILNIVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP029671.1|AWQ76266.1|1063733_1064360_+|hypothetical-protein
MKKRLLLSTFLASALILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP029671.1|AWQ78093.1|1064629_1065013_+|putative-membrane-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIILMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFISAIITLAIGGKSVDKNDSH
>CP029671.1|AWQ77534.1|1065078_1065660_-|histidine-phosphatase-super-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSREEAVDLKVENCKPYIIE
>CP029671.1|AWQ76871.1|1066085_1066337_-|transglycosylase-associated-family-protein
MFGFIGMLIVGGLIGWAAGAIMGKDIPGGILGNIIAGIIGSWVGGKLFGQWGPELGSIYILPALIGSIILIAIVTLILRAMRK
>CP029671.1|AWQ77779.1|1066636_1066900_+|hypothetical-protein
MNMHILYNLRTKHNLEIDELAQQLNEKYGTKYEAHQIWEWENHHHEPKFKDAMHLADFFDAPYEMFLESKVKEYQKHLEEVDIRMDK

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Crispr_ID: CP029671_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029671_5

1746235-1746313

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029671_5

>merge|CP029671|5|1746235-1746313|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>CP029671|5|4|1746235-1746313|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP029671.1\|AWQ77271.1\|1741170_1741644_+\|gyrI-like-small-molecule-binding-domain-protein	unknown	unknown	gnl\|CDD\|226231
CP029671.1\|AWQ78310.1\|1750592_1751279_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
CP029671.1\|AWQ78435.1\|1752616_1753624_+\|biotin-synthase	unknown	unknown	gnl\|CDD\|235755
CP029671.1\|AWQ77983.1\|1739532_1740339_+\|phosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|163441
CP029671.1\|AWQ77584.1\|1755949_1756927_-\|gamma-hemolysin-component-B	unknown	unknown	gnl\|CDD\|273388
CP029671.1\|AWQ78136.1\|1754727_1755420_+\|6-carboxyhexanoate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|224342
CP029671.1\|AWQ78399.1\|1745288_1745675_+\|gtrA-like-family-protein	unknown	unknown	gnl\|CDD\|225155
CP029671.1\|AWQ76818.1\|1735621_1737700_-\|sodium/hydrogen-exchanger-family-protein	unknown	unknown	gnl\|CDD\|223104
CP029671.1\|AWQ78185.1\|1737837_1739247_-\|amino-acid-permease-family-protein	unknown	unknown	gnl\|CDD\|224038
CP029671.1\|AWQ76410.1\|1751256_1752615_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
CP029671.1\|AWQ78377.1\|1733651_1735481_+\|amino-acid-permease-family-protein	unknown	unknown	gnl\|CDD\|372624
CP029671.1\|AWQ78142.1\|1753601_1754717_+\|aminotransferase-class-I-and-II-family-protein	unknown	unknown	gnl\|CDD\|223234
CP029671.1\|AWQ76381.1\|1743159_1743819_-\|putative-membrane-protein	unknown	unknown	unknown
CP029671.1\|AWQ76876.1\|1741766_1742978_-\|drug-resistance-transporter,-Bcr/CflA-subfamily-protein	unknown	unknown	gnl\|CDD\|340878
CP029671.1\|AWQ77323.1\|1756928_1757876_-\|gamma-hemolysin-component-C	unknown	unknown	gnl\|CDD\|369625
CP029671.1\|AWQ76562.1\|1748406_1750140_+\|recF/RecN/SMC-N-terminal-domain-protein	unknown	unknown	gnl\|CDD\|224055
CP029671.1\|AWQ78028.1\|1740401_1740971_-\|peptidase-C39-family-protein	unknown	unknown	gnl\|CDD\|227323
CP029671.1\|AWQ77536.1\|1746618_1748382_+\|ABC-transporter-transmembrane-region-family-protein	unknown	unknown	gnl\|CDD\|224055
CP029671.1\|AWQ77009.1\|1743878_1745021_-\|glycerate-kinase-family-protein	unknown	unknown	gnl\|CDD\|272872
CP029671.1\|AWQ77234.1\|1755430_1755898_+\|queT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623

Protein	Function_ID	Function_description	E-value
CP029671.1\|AWQ77271.1\|1741170_1741644_+\|gyrI-like-small-molecule-binding-domain-protein	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	4.53378e-38
CP029671.1\|AWQ78310.1\|1750592_1751279_+\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	6.55734e-71
CP029671.1\|AWQ78435.1\|1752616_1753624_+\|biotin-synthase	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
CP029671.1\|AWQ77983.1\|1739532_1740339_+\|phosphoesterase-family-protein	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	4.17484e-107
CP029671.1\|AWQ77584.1\|1755949_1756927_-\|gamma-hemolysin-component-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
CP029671.1\|AWQ78136.1\|1754727_1755420_+\|6-carboxyhexanoate--CoA-ligase-family-protein	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	1.03044e-132
CP029671.1\|AWQ78399.1\|1745288_1745675_+\|gtrA-like-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	1.41026e-22
CP029671.1\|AWQ76818.1\|1735621_1737700_-\|sodium/hydrogen-exchanger-family-protein	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.12682e-103
CP029671.1\|AWQ78185.1\|1737837_1739247_-\|amino-acid-permease-family-protein	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
CP029671.1\|AWQ76410.1\|1751256_1752615_+\|adenosylmethionine-8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
CP029671.1\|AWQ78377.1\|1733651_1735481_+\|amino-acid-permease-family-protein	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.50522e-32
CP029671.1\|AWQ78142.1\|1753601_1754717_+\|aminotransferase-class-I-and-II-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	1.12947e-139
CP029671.1\|AWQ77323.1\|1756928_1757876_-\|gamma-hemolysin-component-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.97441e-93
CP029671.1\|AWQ76876.1\|1741766_1742978_-\|drug-resistance-transporter,-Bcr/CflA-subfamily-protein	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.81144e-73
CP029671.1\|AWQ76562.1\|1748406_1750140_+\|recF/RecN/SMC-N-terminal-domain-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	8.92673e-143
CP029671.1\|AWQ78028.1\|1740401_1740971_-\|peptidase-C39-family-protein	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	3.56081e-57
CP029671.1\|AWQ77536.1\|1746618_1748382_+\|ABC-transporter-transmembrane-region-family-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.20525e-146
CP029671.1\|AWQ77009.1\|1743878_1745021_-\|glycerate-kinase-family-protein	gnl\|CDD\|272872	TIGR00045, Glycerate_kinase, glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation. [Energy metabolism, Other].	0
CP029671.1\|AWQ77234.1\|1755430_1755898_+\|queT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.000903859

>CP029671.1|AWQ78399.1|1745288_1745675_+|gtrA-like-family-protein
MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHITGFLVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAEIAPFAGLVITIPITFVLSKWILKDSN
>CP029671.1|AWQ77009.1|1743878_1745021_-|glycerate-kinase-family-protein
MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIPMADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDLLEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVKFTDVNGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSNPLLGENGATYIYGPQKGADAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVVFDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENYQHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ
>CP029671.1|AWQ76381.1|1743159_1743819_-|putative-membrane-protein
MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPERYYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRALLNNDSDKVSNDPKVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKADSKLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDDNGGAN
>CP029671.1|AWQ76876.1|1741766_1742978_-|drug-resistance-transporter,-Bcr/CflA-subfamily-protein
MQSTKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVIVIAKASAGDKFSGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
>CP029671.1|AWQ77271.1|1741170_1741644_+|gyrI-like-small-molecule-binding-domain-protein
MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIAKYDVITLASSKYMVFEAQGAVPKAVQQKMEEVHHYIHQYQANTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
>CP029671.1|AWQ78028.1|1740401_1740971_-|peptidase-C39-family-protein
MMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
>CP029671.1|AWQ77983.1|1739532_1740339_+|phosphoesterase-family-protein
MKIGTIADLHIDRHNKKTSEDYLEALVEIVKYKKLDILLIAGDISNHYQLTHQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPFIVNEEWAIIGHTGWYDYSFAAQRFSLEHLQKGKHYGATWQDKERISWGISDQNLSKIAAEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDIPYSIMGHVHFRKSVMDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI
>CP029671.1|AWQ78185.1|1737837_1739247_-|amino-acid-permease-family-protein
MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSMSDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIAMVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGVTAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIGVPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSMLVSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKNSKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIFLFFFYKKYKTNAEKLAYEQRQNDSGHFRYDNQ
>CP029671.1|AWQ76818.1|1735621_1737700_-|sodium/hydrogen-exchanger-family-protein
MALLEAFLIFIFAVIISSVINNRFPQIPTAFIQIALGVVIFIIPIQVDFQFNSEVFMFAVIAPLLFVEGTHVSRTKLLEYRKPILLMSMALVFATVVGVGYFIHWIWPALPMPAAFAIAAILCPTDAVAVSAITRGKLLPKGSMTILEGESLLNDAAGIISFKIAVTALVTGTFSLFQAVEQFIISTILGVLIGAIIGFVVVRIRIDLTANKGLKDNNTLTFIQLLTPFVVYFLAEEVHASGIIAVVIAGLIHGLERDRLIRAQTELQMNYHQIWNTFSYALNGFVFVVLGFMIPTVVIDIFQTEPDNFSFLIVITILIAIAIYACRFVWVYFWYKDFYFPKNIQSYLDEEHDSHETPPSRVRYAFIMTMCGIHGTISLSMALTLPFIITKGQAFEYRNDLLFIASFMVLISLILAQIVLPLITPSAEDTTFKGMTYQSAKIFIVQKVIQHFKNESKKDKNDTNYRPVLNQYYGELLFLLNSEPNNQNTKELKRLEDIAKVIETSTLERLIDKGKATYQDINNYRNIVELTETHRTASFVEKFANFFKMLWLRLKAMKHYKALNKESKKQEFENSFKDVQKIMRIVNHNIILRLKEEQNSTNVLEVSLVINHYYDMSRSLKWRAQRRKERQENSNQIIPQAMFHNHKLEALYLQRHLLDELIRKNKINNIVAAQIRENINYNEIVLSLQSKH
>CP029671.1|AWQ78377.1|1733651_1735481_+|amino-acid-permease-family-protein
MFNQFKRLIIGQPKKNRELKDEKISKFKGLAILSSDALSSVAYGPEQILITLSVVGAVATWYTLPIAGAVLILLAALIMSYRQIIYAYPKGGGAYMVSKTNLGEKWGLLAGGSLLVDYILTVAVSISSGADAFVAAFPSLYGHKVLIACLLVLFILILNLRGLTESATVLSYPVYLFIIGLVILIFIGTFRVATGDIQPHMHASVGTAVPGVTLFLLLKAFSSGASSLTGVEAISNAVTNFREPSANNAVKTLIAMGSILAFLLVGIVGLAYVYGIMPQTETTVLSQLAMQIFGDNAAFYFVQATTVMILVLAANTGFTAFPMLAASMSKDKYMPRMFTVRGDRLGYSNSIIILGVLAIILIIVFDGMTEDLIPLYAVGVFIPFTLAQFGMVIKWIHERPKNWLSKLSVNLLGGIVTFIVFMILLITKFSQVWPILIFLPFVVIFFLKINKHYRDIAEQLRSDIDVLNVDVVDRNLAIVPITSITTAVDKSIYYAQMLANNDVIAVHVSFGDEDEKAFQEKWKRHFPDVRLVILHSEYRSIIRPISRFIDKINRKANDQNYMITVVIPEFITKKRWHNLLHNQTSLRMKLYLIYQKNVNVCTIPFKLKK
>CP029671.1|AWQ77536.1|1746618_1748382_+|ABC-transporter-transmembrane-region-family-protein
MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVFKIILMMINNAYTINSIMVYIFIALITYISQVCCFGASTMLSHITAYEILSEIRKKLAQKLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLIDWRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQSQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLNYAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEVNQILSLEELVLSTKFKKPQHYEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFTAIVGASGSGKSTIAKLISRYWDVTSGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAKLAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATAYVDPDNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGNYKKMWDTHMHTKDWGINTGHN
>CP029671.1|AWQ76562.1|1748406_1750140_+|recF/RecN/SMC-N-terminal-domain-protein
MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDIVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGEKQRISIARAILKDAPIIILDEATASIDPENEQLIQTAINELSKGKTVITIAHKLETIKNADQIIVLNEGEIIQKGSHDELIRKPGMYQDFIRIKSKSAGWKL
>CP029671.1|AWQ78310.1|1750592_1751279_+|dethiobiotin-synthase
MRIFITSTNTDVGKTYVTKHLYHALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMTDQIFLNKQRVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAVVHQDYVNKNVSASNFLIMNRYTDSYIEKDNQITIGKLTNKTVYTFEEHATYENFSEAFLKQLIGVKNELHTTT
>CP029671.1|AWQ76410.1|1751256_1752615_+|adenosylmethionine-8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEIMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYNTFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRKLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRKCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>CP029671.1|AWQ78435.1|1752616_1753624_+|biotin-synthase
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>CP029671.1|AWQ78142.1|1753601_1754717_+|aminotransferase-class-I-and-II-family-protein
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLEKYPNQNIPKIIISDSVFSTNGDVVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGVDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDIDRLFEILHQED
>CP029671.1|AWQ78136.1|1754727_1755420_+|6-carboxyhexanoate--CoA-ligase-family-protein
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQHLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFAAAKIGYHRLFDIKPVNTRYGGRIIFVDDCIDLNHYISFLESTPKQVVYETV
>CP029671.1|AWQ77234.1|1755430_1755898_+|queT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLSSVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>CP029671.1|AWQ77584.1|1755949_1756927_-|gamma-hemolysin-component-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>CP029671.1|AWQ77323.1|1756928_1757876_-|gamma-hemolysin-component-C
MLKNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN

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Crispr_ID: CP029671_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029671_6

1910856-1910936

Orphan

Consensus_repeat	Method
CAAGTTGGCGGGGCCCCAACACAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029671_6

>merge|CP029671|6|1910856-1910936|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGAAGCTGACAGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGA

>CP029671|6|5|1910856-1910936|CRISPRCasFinder
CAAGTTGGCGGGGCCCCAACACAGA	AGCTGACAGAAAGTCAGCTTACAATAATGTG
CAAGTTGGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029671.1\|AWQ77336.1\|1911740_1912862_-\|sugar-(and-other)-transporter-family-protein	unknown	unknown	gnl\|CDD\|341042
CP029671.1\|AWQ78452.1\|1920534_1921443_+\|membrane-transport-family-protein	unknown	unknown	gnl\|CDD\|223751
CP029671.1\|AWQ76071.1\|1906623_1907883_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP029671.1\|AWQ76844.1\|1919675_1919993_-\|putative-membrane-protein	unknown	unknown	unknown
CP029671.1\|AWQ76438.1\|1908378_1908825_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP029671.1\|AWQ76424.1\|1921849_1921981_+\|putative-nitrogen-regulation-protein-NIFR3	unknown	unknown	unknown
CP029671.1\|AWQ78396.1\|1906066_1906519_-\|molybdenum-cofactor-biosynthesis-protein-C	unknown	unknown	gnl\|CDD\|236483
CP029671.1\|AWQ76969.1\|1909782_1910712_+\|molybdenum-cofactor-biosynthesis-protein-A	unknown	unknown	gnl\|CDD\|274250
CP029671.1\|AWQ77181.1\|1905558_1906065_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|223595
CP029671.1\|AWQ78116.1\|1920237_1920402_-\|hypothetical-protein	unknown	unknown	unknown
CP029671.1\|AWQ77646.1\|1909070_1909670_+\|putative-molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP029671.1\|AWQ76080.1\|1914942_1916208_+\|glycine-glycyltransferase	unknown	unknown	gnl\|CDD\|225224
CP029671.1\|AWQ77298.1\|1907879_1908365_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP029671.1\|AWQ78097.1\|1904523_1905528_+\|thiF-family-protein	unknown	unknown	gnl\|CDD\|181084
CP029671.1\|AWQ76922.1\|1912944_1913385_-\|winged-helix-DNA-binding-domain-protein	unknown	unknown	gnl\|CDD\|197670
CP029671.1\|AWQ77272.1\|1916378_1919492_+\|swarming-motility-protein-SwrC	unknown	unknown	gnl\|CDD\|223911
CP029671.1\|AWQ77500.1\|1903748_1904354_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|226628
CP029671.1\|AWQ78322.1\|1911288_1911639_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP029671.1\|AWQ77750.1\|1908830_1909064_+\|molybdopterin-converting-factor,-subunit-1	unknown	unknown	gnl\|CDD\|340452
CP029671.1\|AWQ77969.1\|1913546_1914311_+\|glyoxalase-like-domain-protein	unknown	unknown	gnl\|CDD\|379203

Protein	Function_ID	Function_description	E-value
CP029671.1\|AWQ77336.1\|1911740_1912862_-\|sugar-(and-other)-transporter-family-protein	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.02034e-68
CP029671.1\|AWQ78452.1\|1920534_1921443_+\|membrane-transport-family-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	7.28102e-43
CP029671.1\|AWQ76071.1\|1906623_1907883_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	4.50966e-159
CP029671.1\|AWQ76438.1\|1908378_1908825_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	6.99133e-58
CP029671.1\|AWQ78396.1\|1906066_1906519_-\|molybdenum-cofactor-biosynthesis-protein-C	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	1.35282e-87
CP029671.1\|AWQ76969.1\|1909782_1910712_+\|molybdenum-cofactor-biosynthesis-protein-A	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.19963e-143
CP029671.1\|AWQ77181.1\|1905558_1906065_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	2.42221e-64
CP029671.1\|AWQ77646.1\|1909070_1909670_+\|putative-molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	2.15389e-66
CP029671.1\|AWQ76080.1\|1914942_1916208_+\|glycine-glycyltransferase	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	1.81413e-143
CP029671.1\|AWQ77298.1\|1907879_1908365_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	1.8954e-49
CP029671.1\|AWQ78097.1\|1904523_1905528_+\|thiF-family-protein	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	6.83722e-133
CP029671.1\|AWQ76922.1\|1912944_1913385_-\|winged-helix-DNA-binding-domain-protein	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP029671.1\|AWQ77272.1\|1916378_1919492_+\|swarming-motility-protein-SwrC	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP029671.1\|AWQ77500.1\|1903748_1904354_+\|ABC-transporter-family-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	1.78595e-116
CP029671.1\|AWQ78322.1\|1911288_1911639_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP029671.1\|AWQ77750.1\|1908830_1909064_+\|molybdopterin-converting-factor,-subunit-1	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP029671.1\|AWQ77969.1\|1913546_1914311_+\|glyoxalase-like-domain-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38

>CP029671.1|AWQ76969.1|1909782_1910712_+|molybdenum-cofactor-biosynthesis-protein-A
MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP029671.1|AWQ77646.1|1909070_1909670_+|putative-molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNIYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP029671.1|AWQ77750.1|1908830_1909064_+|molybdopterin-converting-factor,-subunit-1
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP029671.1|AWQ76438.1|1908378_1908825_+|molybdopterin-synthase-catalytic-subunit
MKQFEIVIEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP029671.1|AWQ77298.1|1907879_1908365_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKTHDYTVATIKHHGHAKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRDEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP029671.1|AWQ76071.1|1906623_1907883_+|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFADGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP029671.1|AWQ78396.1|1906066_1906519_-|molybdenum-cofactor-biosynthesis-protein-C
MVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTIIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSGQ
>CP029671.1|AWQ77181.1|1905558_1906065_+|molybdenum-cofactor-biosynthesis-protein-B
MGEHQNVKLNRTVKAAVLTVSDTRDFVTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIEGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP029671.1|AWQ78097.1|1904523_1905528_+|thiF-family-protein
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDGCIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKHRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP029671.1|AWQ77500.1|1903748_1904354_+|ABC-transporter-family-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTTKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSKHIDQLIQTLNINHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP029671.1|AWQ78322.1|1911288_1911639_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP029671.1|AWQ77336.1|1911740_1912862_-|sugar-(and-other)-transporter-family-protein
MYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETDVINKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP029671.1|AWQ76922.1|1912944_1913385_-|winged-helix-DNA-binding-domain-protein
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP029671.1|AWQ77969.1|1913546_1914311_+|glyoxalase-like-domain-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP029671.1|AWQ76080.1|1914942_1916208_+|glycine-glycyltransferase
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMETSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYILNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP029671.1|AWQ77272.1|1916378_1919492_+|swarming-motility-protein-SwrC
MVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHVDGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP029671.1|AWQ76844.1|1919675_1919993_-|putative-membrane-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP029671.1|AWQ78116.1|1920237_1920402_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDLEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP029671.1|AWQ78452.1|1920534_1921443_+|membrane-transport-family-protein
MTEQFTMIILLIALGYFLKRINFIKATDSQVIATLVLNVTLPSLVIVNLNSAELKLSFSILPILMIIYGIVAKMIAVWFFRKYDNHMRGSVGMMTGAMNIGLFAYPLIEVIWPKTGLIYFGMADIGGAFVMFGITYFVGSYFSEGSDQFDFKYLGKKLLQSVPLVTYIVMFILNINHIHLPHVAIDFFSILSHANMPLSMILLGVMLNFTLERKYIPATIKYLCLHYGLALVAGLLVHVLLPVSDDMIKTTLLVTWMFPVGVAIISYGIQFKYRTLPFIGMTTNLTIIISIIILYVYQAVFV
>CP029671.1|AWQ76424.1|1921849_1921981_+|putative-nitrogen-regulation-protein-NIFR3
MYGAYLINEYHQDFKSIANFKVLKRMINVMMCYCVLFLEPRIS

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Crispr_ID: CP029671_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029671_8

2031219-2031300

Orphan

Consensus_repeat	Method
AAGAAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP029671_8

>merge|CP029671|8|2031219-2031300|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTGAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTG

>CP029671|8|7|2031219-2031300|CRISPRCasFinder
AAGAAGCCCCTAACAACTAAAGTTG	AAAAGTAGGAGCGCCTGCGCTAAGCGCATGCA
TAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029671.1\|AWQ76835.1\|2038926_2039340_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP029671.1\|AWQ76375.1\|2040103_2040814_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP029671.1\|AWQ76349.1\|2031316_2032408_-\|putative-membrane-protein	unknown	unknown	unknown
CP029671.1\|AWQ78252.1\|2036194_2036425_+\|putative-membrane-protein	unknown	unknown	unknown
CP029671.1\|AWQ78440.1\|2033652_2033973_-\|HTH-type-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP029671.1\|AWQ78095.1\|2037096_2038470_+\|EVE-domain-protein	unknown	unknown	gnl\|CDD\|376640
CP029671.1\|AWQ77812.1\|2019601_2020708_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP029671.1\|AWQ77710.1\|2032673_2033651_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	unknown	unknown	gnl\|CDD\|224151
CP029671.1\|AWQ76411.1\|2034124_2034790_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187554
CP029671.1\|AWQ78173.1\|2011837_2019283_+\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	unknown	unknown	gnl\|CDD\|275089
CP029671.1\|AWQ76451.1\|2035225_2036164_+\|mannose-6-phosphate-isomerase,-class-I	unknown	unknown	gnl\|CDD\|224399
CP029671.1\|AWQ78148.1\|2039539_2039983_+\|DNA-protection-during-starvation-protein-1	unknown	unknown	gnl\|CDD\|223854
CP029671.1\|AWQ78371.1\|2023320_2024859_-\|PTS-system-mannitol-specific-EIICB-component	unknown	unknown	gnl\|CDD\|225123
CP029671.1\|AWQ76971.1\|2029941_2030100_-\|hypothetical-protein	unknown	unknown	unknown
CP029671.1\|AWQ77187.1\|2020707_2021142_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP029671.1\|AWQ76712.1\|2028456_2029284_+\|cof-like-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223635
CP029671.1\|AWQ76962.1\|2027576_2028359_+\|ABC-transporter-family-protein	unknown	unknown	gnl\|CDD\|224044
CP029671.1\|AWQ76698.1\|2025539_2027345_+\|glutamine-fructose-6-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234729
CP029671.1\|AWQ77164.1\|2030092_2030263_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950
CP029671.1\|AWQ77520.1\|2021153_2023286_-\|PRD-domain-protein	unknown	unknown	gnl\|CDD\|226234

Protein	Function_ID	Function_description	E-value
CP029671.1\|AWQ76835.1\|2038926_2039340_+\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP029671.1\|AWQ76375.1\|2040103_2040814_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP029671.1\|AWQ78095.1\|2037096_2038470_+\|EVE-domain-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.11455e-06
CP029671.1\|AWQ77812.1\|2019601_2020708_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP029671.1\|AWQ77710.1\|2032673_2033651_-\|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.49165e-107
CP029671.1\|AWQ76411.1\|2034124_2034790_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP029671.1\|AWQ78173.1\|2011837_2019283_+\|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.62302e-108
CP029671.1\|AWQ76451.1\|2035225_2036164_+\|mannose-6-phosphate-isomerase,-class-I	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP029671.1\|AWQ77520.1\|2021153_2023286_-\|PRD-domain-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.02509e-68
CP029671.1\|AWQ78148.1\|2039539_2039983_+\|DNA-protection-during-starvation-protein-1	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP029671.1\|AWQ78371.1\|2023320_2024859_-\|PTS-system-mannitol-specific-EIICB-component	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP029671.1\|AWQ77187.1\|2020707_2021142_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP029671.1\|AWQ76712.1\|2028456_2029284_+\|cof-like-hydrolase-family-protein	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	3.77761e-55
CP029671.1\|AWQ76962.1\|2027576_2028359_+\|ABC-transporter-family-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.29094e-106
CP029671.1\|AWQ76698.1\|2025539_2027345_+\|glutamine-fructose-6-phosphate-transaminase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP029671.1\|AWQ77164.1\|2030092_2030263_-\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00028059
CP029671.1\|AWQ78440.1\|2033652_2033973_-\|HTH-type-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17

>CP029671.1|AWQ77164.1|2030092_2030263_-|hypothetical-protein
MSPKDTTRFETKPDHQAQFDWKESINFKTKDNQRIPLYIGVLLLYYSRFIIMHNNE
>CP029671.1|AWQ76971.1|2029941_2030100_-|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP029671.1|AWQ76712.1|2028456_2029284_+|cof-like-hydrolase-family-protein
MDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP029671.1|AWQ76962.1|2027576_2028359_+|ABC-transporter-family-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATTGGVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLNILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP029671.1|AWQ76698.1|2025539_2027345_+|glutamine-fructose-6-phosphate-transaminase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP029671.1|AWQ78371.1|2023320_2024859_-|PTS-system-mannitol-specific-EIICB-component
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP029671.1|AWQ77520.1|2021153_2023286_-|PRD-domain-protein
MLLSTREKEMIALLIKYHSQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP029671.1|AWQ77187.1|2020707_2021142_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP029671.1|AWQ77812.1|2019601_2020708_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>CP029671.1|AWQ78173.1|2011837_2019283_+|sasC/Mrp/FmtB-intercellular-aggregation-domain-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPAAQPANQGGQANPAGGAAQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAAPVAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGITKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQTANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQADIDGLVTKLQAALIDNQAAIAELDTKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTTPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEIFKIENITDSTQTKMDAYKEVRQAATARKAQNATVSNATDEEVAEANAAVDAAQTEGLHDIQVVKSQQEVADTKAKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNATANTDVDNAKTTNEATIAAITPDANVKPAAKQAIADKVQAQETAIDANNGSTTEEKEAAKQQVQTEKTAADAAIDAAHSNVEVEAAKNAEIAKIEAIQPATTTKDNAKQAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITAILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQATQTNVINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDDNGVDTAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILNNNETTNEEKGNDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKKELDQAAADKKTQIEQTPNASQQEINDAKQEVDTELNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIEDAYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKESATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALENINNGVDNGDVDDALTQGKAAIDTIQVDATVKPKANQAIEAKAEDTKESIDHSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPVVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNTEVAELQNVTIPAIEAIVPQNDPDANDTNNGTDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTVTSATDDAKDKPQANNNSSADASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEAASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQKSVGPVANNKAKDMQTNDTQKSVGSAANNKATQNDGANASPATVSNGSHSMHQDMLNVTKPEENKANAKSDQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMVFLIRRFTKKDQQTEE
>CP029671.1|AWQ76349.1|2031316_2032408_-|putative-membrane-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP029671.1|AWQ77710.1|2032673_2033651_-|cadmium,-cobalt-and-zinc/H(+)-K(+)-antiporter
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP029671.1|AWQ78440.1|2033652_2033973_-|HTH-type-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP029671.1|AWQ76411.1|2034124_2034790_+|NAD-dependent-epimerase/dehydratase-family-protein
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP029671.1|AWQ76451.1|2035225_2036164_+|mannose-6-phosphate-isomerase,-class-I
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP029671.1|AWQ78252.1|2036194_2036425_+|putative-membrane-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP029671.1|AWQ78095.1|2037096_2038470_+|EVE-domain-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVKKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP029671.1|AWQ76835.1|2038926_2039340_+|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP029671.1|AWQ78148.1|2039539_2039983_+|DNA-protection-during-starvation-protein-1
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP029671.1|AWQ76375.1|2040103_2040814_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: CP029671_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029671_9

2543353-2543437

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029671_9

>merge|CP029671|9|2543353-2543437|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTGTGGGCCCCAACACAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGGTG

>CP029671|9|8|2543353-2543437|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGTG	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP029671.1\|AWQ76358.1\|2551483_2552830_+\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP029671.1\|AWQ77882.1\|2548641_2549781_+\|chaperone-protein-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP029671.1\|AWQ78384.1\|2535482_2536199_+\|methyltransferase-type-12	unknown	unknown	gnl\|CDD\|379312
CP029671.1\|AWQ78405.1\|2533982_2534552_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP029671.1\|AWQ77324.1\|2546673_2548506_+\|chaperone-protein-DnaK	unknown	unknown	gnl\|CDD\|234715
CP029671.1\|AWQ77395.1\|2539740_2540715_+\|DNA-polymerase-III,-delta-subunit	unknown	unknown	gnl\|CDD\|235511
CP029671.1\|AWQ76089.1\|2543745_2544870_+\|radical-SAM-superfamily-protein	unknown	unknown	gnl\|CDD\|236309
CP029671.1\|AWQ76522.1\|2553518_2554226_+\|putative-membrane-bound-serine-protease	unknown	unknown	gnl\|CDD\|223961
CP029671.1\|AWQ77658.1\|2535126_2535480_+\|ribosomal-silencing-factor-RsfS	unknown	unknown	gnl\|CDD\|223870
CP029671.1\|AWQ77252.1\|2544969_2545947_+\|heat-inducible-transcription-repressor-HrcA	unknown	unknown	gnl\|CDD\|273017
CP029671.1\|AWQ76177.1\|2553122_2553299_+\|ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP029671.1\|AWQ76347.1\|2536247_2536925_+\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	unknown	unknown	gnl\|CDD\|224472
CP029671.1\|AWQ77680.1\|2534541_2535126_+\|HD-domain-protein	unknown	unknown	gnl\|CDD\|224627
CP029671.1\|AWQ78334.1\|2550724_2551477_+\|ribosomal-RNA-small-subunit-methyltransferase-E	unknown	unknown	gnl\|CDD\|224303
CP029671.1\|AWQ78358.1\|2540759_2541011_-\|ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP029671.1\|AWQ77359.1\|2549784_2550723_+\|ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP029671.1\|AWQ76443.1\|2545978_2546605_+\|protein-GrpE	unknown	unknown	gnl\|CDD\|237622
CP029671.1\|AWQ76504.1\|2541356_2543180_+\|GTP-binding-protein-LepA	unknown	unknown	gnl\|CDD\|235462
CP029671.1\|AWQ78145.1\|2537016_2537478_+\|comE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622
CP029671.1\|AWQ76455.1\|2537482_2539684_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212

Protein	Function_ID	Function_description	E-value
CP029671.1\|AWQ76358.1\|2551483_2552830_+\|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP029671.1\|AWQ77882.1\|2548641_2549781_+\|chaperone-protein-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP029671.1\|AWQ78384.1\|2535482_2536199_+\|methyltransferase-type-12	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.79783e-16
CP029671.1\|AWQ78405.1\|2533982_2534552_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	2.64141e-76
CP029671.1\|AWQ77324.1\|2546673_2548506_+\|chaperone-protein-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP029671.1\|AWQ77395.1\|2539740_2540715_+\|DNA-polymerase-III,-delta-subunit	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP029671.1\|AWQ76089.1\|2543745_2544870_+\|radical-SAM-superfamily-protein	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP029671.1\|AWQ76522.1\|2553518_2554226_+\|putative-membrane-bound-serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	5.49862e-65
CP029671.1\|AWQ77658.1\|2535126_2535480_+\|ribosomal-silencing-factor-RsfS	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP029671.1\|AWQ77252.1\|2544969_2545947_+\|heat-inducible-transcription-repressor-HrcA	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP029671.1\|AWQ76177.1\|2553122_2553299_+\|ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP029671.1\|AWQ76347.1\|2536247_2536925_+\|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	8.07958e-34
CP029671.1\|AWQ77680.1\|2534541_2535126_+\|HD-domain-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	2.21948e-80
CP029671.1\|AWQ78334.1\|2550724_2551477_+\|ribosomal-RNA-small-subunit-methyltransferase-E	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.90273e-91
CP029671.1\|AWQ78358.1\|2540759_2541011_-\|ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP029671.1\|AWQ77359.1\|2549784_2550723_+\|ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	9.7051e-134
CP029671.1\|AWQ76443.1\|2545978_2546605_+\|protein-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP029671.1\|AWQ76504.1\|2541356_2543180_+\|GTP-binding-protein-LepA	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP029671.1\|AWQ78145.1\|2537016_2537478_+\|comE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102
CP029671.1\|AWQ76455.1\|2537482_2539684_+\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	3.64233e-90

>CP029671.1|AWQ76504.1|2541356_2543180_+|GTP-binding-protein-LepA
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELLPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP029671.1|AWQ78358.1|2540759_2541011_-|ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP029671.1|AWQ77395.1|2539740_2540715_+|DNA-polymerase-III,-delta-subunit
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP029671.1|AWQ76455.1|2537482_2539684_+|DNA-internalization-related-competence-protein-ComEC/Rec2
MLYVALSMIVGVLWNSSKVLSTFLFILLLYITYRKNKIVYAPISLFLIIFSSWYLHYSQQAIFNYINYIERNSQFNERAQVIQIQRQGSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLYAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP029671.1|AWQ78145.1|2537016_2537478_+|comE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP029671.1|AWQ76347.1|2536247_2536925_+|competence-ComEA-helix-hairpin-helix-repeat-region-domain-protein
MYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTI
>CP029671.1|AWQ78384.1|2535482_2536199_+|methyltransferase-type-12
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESNILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDTERLFFIAKK
>CP029671.1|AWQ77658.1|2535126_2535480_+|ribosomal-silencing-factor-RsfS
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP029671.1|AWQ77680.1|2534541_2535126_+|HD-domain-protein
MNIEKAKRLAKEKLPEKRYNHSLRVAETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP029671.1|AWQ78405.1|2533982_2534552_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH
>CP029671.1|AWQ76089.1|2543745_2544870_+|radical-SAM-superfamily-protein
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP029671.1|AWQ77252.1|2544969_2545947_+|heat-inducible-transcription-repressor-HrcA
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP029671.1|AWQ76443.1|2545978_2546605_+|protein-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP029671.1|AWQ77324.1|2546673_2548506_+|chaperone-protein-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP029671.1|AWQ77882.1|2548641_2549781_+|chaperone-protein-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFKRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP029671.1|AWQ77359.1|2549784_2550723_+|ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGSNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDELDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP029671.1|AWQ78334.1|2550724_2551477_+|ribosomal-RNA-small-subunit-methyltransferase-E
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIAVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVVKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSAISYEKELMG
>CP029671.1|AWQ76358.1|2551483_2552830_+|threonylcarbamoyladenosine-tRNA-methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP029671.1|AWQ76177.1|2553122_2553299_+|ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP029671.1|AWQ76522.1|2553518_2554226_+|putative-membrane-bound-serine-protease
MSYNNFLQMTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029671_1	1.1\|596331\|34\|CP029671\|CRISPRCasFinder	596331-596364	34	CP029671.1	122005-122038	1	0.971
CP029671_5	5.1\|1746258\|33\|CP029671\|CRISPRCasFinder	1746258-1746290	33	CP029671.1	596018-596050	1	0.97
CP029671_5	5.1\|1746258\|33\|CP029671\|CRISPRCasFinder	1746258-1746290	33	CP029671.1	648478-648510	1	0.97
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	648538-648568	1	0.968
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	648594-648624	1	0.968
CP029671_9	9.1\|2543379\|33\|CP029671\|CRISPRCasFinder	2543379-2543411	33	CP029671.1	122005-122037	1	0.97
CP029671_9	9.1\|2543379\|33\|CP029671\|CRISPRCasFinder	2543379-2543411	33	CP029671.1	655777-655809	1	0.97
CP029671_9	9.1\|2543379\|33\|CP029671\|CRISPRCasFinder	2543379-2543411	33	CP029671.1	1295707-1295739	1	0.97
CP029671_4	4.1\|1670320\|46\|CP029671\|PILER-CR	1670320-1670365	46	CP029671.1	1666670-1666715	2	0.957
CP029671_4	4.2\|1670383\|37\|CP029671\|PILER-CR	1670383-1670419	37	CP029671.1	1666733-1666769	2	0.946
CP029671_5	5.1\|1746258\|33\|CP029671\|CRISPRCasFinder	1746258-1746290	33	CP029671.1	648534-648566	2	0.939
CP029671_5	5.1\|1746258\|33\|CP029671\|CRISPRCasFinder	1746258-1746290	33	CP029671.1	648590-648622	2	0.939
CP029671_5	5.1\|1746258\|33\|CP029671\|CRISPRCasFinder	1746258-1746290	33	CP029671.1	2136180-2136212	2	0.939
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	32267-32297	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	122049-122079	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	327958-327988	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	430053-430083	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	596022-596052	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	648482-648512	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	1096315-1096345	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	1394367-1394397	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	1921682-1921712	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	2219805-2219835	2	0.935
CP029671_6	6.1\|1910881\|31\|CP029671\|CRISPRCasFinder	1910881-1910911	31	CP029671.1	2528743-2528773	2	0.935

1. spacer 1.1|596331|34|CP029671|CRISPRCasFinder matches to position: 122005-122038, mismatch: 1, identity: 0.971

atgggccccaacaaagagaaattggattctcaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
*****************************.****

2. spacer 5.1|1746258|33|CP029671|CRISPRCasFinder matches to position: 596018-596050, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

3. spacer 5.1|1746258|33|CP029671|CRISPRCasFinder matches to position: 648478-648510, mismatch: 1, identity: 0.97

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcggaaagtcagcttacaataatg	Protospacer
*** *****************************

4. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 648538-648568, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

5. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 648594-648624, mismatch: 1, identity: 0.968

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacggaaagtcagcttacaataatgtg	Protospacer
*******.***********************

6. spacer 9.1|2543379|33|CP029671|CRISPRCasFinder matches to position: 122005-122037, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

7. spacer 9.1|2543379|33|CP029671|CRISPRCasFinder matches to position: 655777-655809, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacacagagaaattggatttccaat	Protospacer
***************************.*****

8. spacer 9.1|2543379|33|CP029671|CRISPRCasFinder matches to position: 1295707-1295739, mismatch: 1, identity: 0.97

tgggccccaacacagagaaattggattcccaat	CRISPR spacer
tgggccccaacaaagagaaattggattcccaat	Protospacer
************ ********************

9. spacer 4.1|1670320|46|CP029671|PILER-CR matches to position: 1666670-1666715, mismatch: 2, identity: 0.957

acaaagataaacctaattatcaatttggtggacacaacagtgttga	CRISPR spacer
acaaagataaacctaattatcaattcggtggacacaatagtgttga	Protospacer
*************************.***********.********

10. spacer 4.2|1670383|37|CP029671|PILER-CR matches to position: 1666733-1666769, mismatch: 2, identity: 0.946

ttccaaaagtaagtggtcaaaatgaaggtcaacaaac	CRISPR spacer
ttccaaaagtaagcggccaaaatgaaggtcaacaaac	Protospacer
*************.**.********************

11. spacer 5.1|1746258|33|CP029671|CRISPRCasFinder matches to position: 648534-648566, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

12. spacer 5.1|1746258|33|CP029671|CRISPRCasFinder matches to position: 648590-648622, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacggaaagtcagcttacaataatg	Protospacer
*** *****.***********************

13. spacer 5.1|1746258|33|CP029671|CRISPRCasFinder matches to position: 2136180-2136212, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaggctggcggaaagtcagcttacaataatg	Protospacer
*** .****************************

14. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 32267-32297, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

15. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 122049-122079, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

16. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 327958-327988, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

17. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 430053-430083, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

18. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 596022-596052, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

19. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 648482-648512, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

20. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 1096315-1096345, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

21. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 1394367-1394397, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

22. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 1921682-1921712, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

23. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 2219805-2219835, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtg	Protospacer
*******..**********************

24. spacer 6.1|1910881|31|CP029671|CRISPRCasFinder matches to position: 2528743-2528773, mismatch: 2, identity: 0.935

agctgacagaaagtcagcttacaataatgtg	CRISPR spacer
agctggcggaaagtcagcttacaataatgtg	Protospacer
*****.*.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029671_7	7.1\|2018920\|34\|CP029671\|CRISPRCasFinder	2018920-2018953	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP029671_7	7.1\|2018920\|34\|CP029671\|CRISPRCasFinder	2018920-2018953	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
CP029671_8	8.1\|2031244\|32\|CP029671\|CRISPRCasFinder	2031244-2031275	32	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	41454-41485	9	0.719
CP029671_8	8.1\|2031244\|32\|CP029671\|CRISPRCasFinder	2031244-2031275	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	296489-296520	10	0.688

1. spacer 7.1|2018920|34|CP029671|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
agcatataaaagctataaagctaaagatatgcaa	Protospacer
  **  *. **.* ********************

2. spacer 7.1|2018920|34|CP029671|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cccagttgcaaacaataaagctaaagatatgcaa	CRISPR spacer
tactgtttataacaataaagctaaagttattcaa	Protospacer
. * ***   **************** *** ***

3. spacer 8.1|2031244|32|CP029671|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.719

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tggaggtggagcgcctgcgcaaggcgcatgag	Protospacer
 ..**  ************* *.******* .

4. spacer 8.1|2031244|32|CP029671|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

aaaagtaggagcgcctgcgctaagcgcatgca	CRISPR spacer
tcgaagccgagcgcctgcgcgtagcgcatgcg	Protospacer
  .*.   ************  *********.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

420398 : 428871

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ77141.1\|420398_420965_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AWQ76924.1\|420967_421996_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AWQ78066.1\|421988_423473_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.9e-45	31.7
AWQ78242.1\|423451_425641_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	3.5e-141	39.8
AWQ77465.1\|425633_426305_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
AWQ78215.1\|426306_426570_-	phosphoribosylformylglycinamidine synthase, purS protein	NA	NA	NA	NA
AWQ76563.1\|426569_427274_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AWQ76115.1\|427277_428402_-	N5-carboxyaminoimidazole ribonucleotide synthase	NA	NA	NA	NA
AWQ77582.1\|428388_428871_-	phosphoribosylaminoimidazole carboxylase, catalytic subunit	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	44.7

DBSCAN-SWA_2

617222 : 638797

Staphylococcus_phage(66.67%)

terminase,integrase,capsid

attL 632572:632587|attR 639115:639130

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ76103.1\|617222_617951_+	putative lipoprotein	H9A0X8	Staphylococcus_phage	1.3e-18	37.5
AWQ76970.1\|618142_618289_+	hypothetical protein	NA	NA	NA	NA
AWQ76093.1\|618304_618628_+	hypothetical protein	NA	NA	NA	NA
AWQ76184.1\|619823_620546_+	enterotoxin type E	A0A1X9H080	Staphylococcus_phage	2.1e-26	34.9
AWQ77420.1\|620712_621513_-	enterotoxin type C-2	A0A097PAT7	Streptococcus_pyogenes_phage	3.1e-50	43.4
AWQ76560.1\|622296_622851_+	putative penicillin binding protein	A0A1W6JQE5	Staphylococcus_phage	6.3e-95	99.5
AWQ76445.1\|623145_624102_-	hypothetical protein	Q938J2	Temperate_phage	1.0e-07	27.7
AWQ78011.1\|624094_624607_-	hypothetical protein	A7J2B6	Streptococcus_phage	1.1e-21	37.5
AWQ76921.1\|625047_625617_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	9.3e-102	98.9
AWQ77105.1\|625613_625955_-	putative pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	3.2e-57	97.3
AWQ77113.1\|625957_626485_-\|capsid	putative determinant of capsid size	Q4ZE87	Staphylococcus_phage	3.2e-88	96.6
AWQ78181.1\|626535_626754_-	hypothetical protein	NA	NA	NA	NA
AWQ76785.1\|626771_627350_-	putative pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	4.8e-29	38.9
AWQ77784.1\|627361_627703_-	putative saPI1 ORF8-like protein	Q4ZE66	Staphylococcus_phage	9.3e-57	97.3
AWQ77116.1\|628342_628861_-	putative saPI1 ORF9-like protein	Q4ZE67	Staphylococcus_phage	3.6e-84	87.8
AWQ77458.1\|628857_629238_-	putative interference protein with phage growth	Q4ZE71	Staphylococcus_phage	1.0e-67	97.6
AWQ77235.1\|629547_631257_-	hypothetical protein	Q4ZE73	Staphylococcus_phage	1.8e-302	92.6
AWQ76206.1\|631270_632140_-	primase C terminal 1 family protein	Q4ZE74	Staphylococcus_phage	1.4e-162	95.8
AWQ77411.1\|632203_632521_-	hypothetical protein	A0A1W6JQH0	Staphylococcus_phage	2.4e-19	57.0
AWQ77845.1\|632523_632733_-	putative pathogenicity island protein	Q4ZE76	Staphylococcus_phage	7.7e-30	95.7
632572:632587	attL	NA	NA	NA	NA
AWQ76341.1\|632725_632872_-	putative membrane protein	NA	NA	NA	NA
AWQ77883.1\|632883_633102_-	helix-turn-helix family protein	NA	NA	NA	NA
AWQ78118.1\|633137_633341_-	helix-turn-helix domain protein	NA	NA	NA	NA
AWQ77127.1\|633476_634280_+	helix-turn-helix domain protein	A0A2H4JC02	uncultured_Caudovirales_phage	5.3e-10	55.9
AWQ76114.1\|634974_635376_+\|integrase	phage integrase family protein	A0A0A8WF08	Clostridium_phage	8.7e-14	35.3
AWQ77505.1\|635938_636403_-	ssrA-binding protein	W5RAM5	Staphylococcus_phage	1.6e-80	98.7
AWQ77227.1\|636424_638797_-	ribonuclease R	Q0GXV6	Lactococcus_phage	4.3e-92	38.8
639115:639130	attR	NA	NA	NA	NA

DBSCAN-SWA_3

691462 : 704402

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ77929.1\|691462_692434_-	fecCD transport family protein	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AWQ77807.1\|692808_693780_-	ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AWQ76946.1\|693897_696003_-	ribonucleoside-diphosphate reductase, alpha subunit	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AWQ77763.1\|695965_696364_-	nrdI protein	A0A2H4J545	uncultured_Caudovirales_phage	1.6e-52	72.0
AWQ76179.1\|697164_698031_+	eamA-like transporter family protein	NA	NA	NA	NA
AWQ77231.1\|698050_698551_+	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AWQ76194.1\|698891_700397_+	H+ symporter family protein	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AWQ76573.1\|700666_701584_+	putative lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
AWQ77446.1\|702462_703005_-	putative 5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AWQ77351.1\|703343_704402_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_4

716373 : 724194

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ77325.1\|716373_717525_-	chorismate binding enzyme family protein	S4VNU7	Pandoravirus	6.0e-23	35.7
AWQ77687.1\|717508_718102_-	glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AWQ76614.1\|718452_719121_+	queuosine biosynthesis protein QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AWQ77376.1\|719122_719542_+	queuosine biosynthesis protein QueD	S4U060	uncultured_phage	6.3e-07	28.7
AWQ76942.1\|719545_720259_+	7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AWQ78375.1\|720357_720942_+	putative membrane protein	NA	NA	NA	NA
AWQ76675.1\|721221_721662_+	electron transfer DM13 family protein	NA	NA	NA	NA
AWQ77698.1\|722004_722478_+	doxX family protein	NA	NA	NA	NA
AWQ76319.1\|722452_723139_+	response regulator	NA	NA	NA	NA
AWQ78370.1\|723138_724194_+	histidine protein kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_5

2254360 : 2361526

100

Staphylococcus_phage(87.72%)

tRNA,integrase,protease,transposase

attL 2301356:2301372|attR 2336564:2336580

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWQ77935.1\|2254360_2255680_-\|transposase	transposase family protein	NA	NA	NA	NA
AWQ77360.1\|2256263_2257325_+	phosphotransferase system, EIIC family protein	NA	NA	NA	NA
AWQ76475.1\|2257582_2259040_+	amino ABC transporter, permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein	NA	NA	NA	NA
AWQ78429.1\|2259032_2259755_+	ABC transporter family protein	G9BWD6	Planktothrix_phage	1.3e-36	42.7
AWQ78042.1\|2259905_2261033_+	epoxyqueuosine reductase	NA	NA	NA	NA
AWQ77354.1\|2261037_2261508_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
AWQ77567.1\|2261666_2262266_+	glucosamine-6-phosphate isomerase family protein	NA	NA	NA	NA
AWQ76794.1\|2262290_2262443_+	hypothetical protein	NA	NA	NA	NA
AWQ77844.1\|2262990_2263386_+	putative membrane protein	NA	NA	NA	NA
AWQ78365.1\|2263581_2264967_+	fumarate hydratase, class II	NA	NA	NA	NA
AWQ77817.1\|2265419_2266241_-	RNA pseudouridylate synthase family protein	NA	NA	NA	NA
AWQ77389.1\|2266403_2267516_+	histidine kinase family protein	NA	NA	NA	NA
AWQ78486.1\|2267537_2268161_+	response regulator	NA	NA	NA	NA
AWQ77853.1\|2268516_2268981_+	helix-turn-helix family protein	NA	NA	NA	NA
AWQ78055.1\|2269159_2270284_+	hypothetical protein	NA	NA	NA	NA
AWQ76102.1\|2270352_2270697_+	hypothetical protein	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AWQ78024.1\|2271624_2272821_+	calcineurin-like phosphoesterase family protein	NA	NA	NA	NA
AWQ77756.1\|2272810_2275747_+	AAA domain protein	NA	NA	NA	NA
AWQ76464.1\|2275743_2276685_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AWQ77927.1\|2276805_2277768_-	foldase protein PrsA	NA	NA	NA	NA
AWQ77221.1\|2277972_2278530_-	hypothetical protein	NA	NA	NA	NA
AWQ77161.1\|2279264_2279630_-	hypothetical protein	NA	NA	NA	NA
AWQ77320.1\|2279771_2280194_-	protein hit	NA	NA	NA	NA
AWQ77487.1\|2280327_2281068_+	ABC transporter family protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AWQ77974.1\|2281060_2282284_+	bacterial ABC transporter EcsB family protein	NA	NA	NA	NA
AWQ76415.1\|2282407_2282911_-	signal transduction protein TRAP	NA	NA	NA	NA
AWQ78155.1\|2283206_2284211_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AWQ77283.1\|2284268_2285192_+	ferrochelatase	NA	NA	NA	NA
AWQ77504.1\|2285215_2286616_+	protoporphyrinogen oxidase	NA	NA	NA	NA
AWQ76995.1\|2286938_2287493_+	serine hydrolase family protein	NA	NA	NA	NA
AWQ77470.1\|2288870_2289635_+	enterotoxin type D	A0A1X9H080	Staphylococcus_phage	2.3e-31	37.1
AWQ78268.1\|2290089_2290635_+	toxin beta-grasp domain protein	A0EX09	Staphylococcus_phage	1.8e-25	38.6
AWQ76439.1\|2290669_2291398_+	toxin beta-grasp domain protein	A0A1X9H080	Staphylococcus_phage	1.1e-27	39.2
AWQ76682.1\|2291605_2291953_+	enterotoxin type B	A0A097PAT7	Streptococcus_pyogenes_phage	3.0e-10	37.9
AWQ76327.1\|2292209_2292323_+	toxin beta-grasp domain protein	NA	NA	NA	NA
AWQ76335.1\|2292619_2293117_+	enterotoxin H	A0A075M4C7	Staphylococcus_phage	4.7e-33	45.5
AWQ76480.1\|2293399_2294176_+	enterotoxin type G	NA	NA	NA	NA
AWQ76782.1\|2294727_2295504_-	hypothetical protein	NA	NA	NA	NA
AWQ76359.1\|2295524_2295761_-	hypothetical protein	NA	NA	NA	NA
AWQ78044.1\|2295838_2296333_-	hypothetical protein	NA	NA	NA	NA
AWQ78350.1\|2297166_2297955_-	hypothetical protein	A0A2H4PQI0	Staphylococcus_phage	3.6e-144	98.5
AWQ77995.1\|2299318_2300254_+	leucotoxin LukEv	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AWQ78401.1\|2300261_2301239_+	leucotoxin LukDv	A0A2H4PQH7	Staphylococcus_phage	1.5e-184	99.4
2301356:2301372	attL	NA	NA	NA	NA
AWQ76964.1\|2301496_2301622_+	hypothetical protein	NA	NA	NA	NA
AWQ76232.1\|2301608_2302400_-	hypothetical protein	NA	NA	NA	NA
AWQ76549.1\|2302404_2302878_-	hypothetical protein	NA	NA	NA	NA
AWQ77870.1\|2303079_2303352_+	putative membrane protein	A0A2H4PQH0	Staphylococcus_phage	3.1e-31	83.5
AWQ78141.1\|2303555_2303675_-	hypothetical protein	NA	NA	NA	NA
AWQ77972.1\|2303824_2304406_-	hypothetical protein	A0A2H4PQH6	Staphylococcus_phage	9.6e-54	64.8
AWQ78402.1\|2305369_2306077_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	7.9e-127	97.0
AWQ78176.1\|2306201_2306924_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	3.5e-130	98.3
AWQ77101.1\|2306981_2307701_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.3e-129	98.7
AWQ78089.1\|2307821_2308541_+\|protease	serine protease SplF	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AWQ76108.1\|2308698_2309418_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.9e-131	99.6
AWQ77011.1\|2309778_2311335_+	type I restriction-modification system, M subunit	A0A2H4PQP4	Staphylococcus_phage	1.6e-289	100.0
AWQ78265.1\|2311327_2312557_+	type I restriction modification DNA specificity domain protein	A0A2H4PQP5	Staphylococcus_phage	4.0e-134	64.7
AWQ78481.1\|2313008_2313509_+\|transposase	putative transposase	NA	NA	NA	NA
AWQ76246.1\|2314539_2315109_+\|integrase	integrase core domain protein	A0A2I7SC85	Paenibacillus_phage	1.3e-55	56.8
AWQ78272.1\|2315306_2315879_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	2.3e-23	93.1
AWQ77831.1\|2315979_2316321_-	hypothetical protein	A0A2H4PQN6	Staphylococcus_phage	1.1e-54	94.7
AWQ76521.1\|2316348_2316987_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	1.2e-78	88.6
AWQ76518.1\|2317061_2318057_-	hypothetical protein	A0A2H4PQN2	Staphylococcus_phage	2.6e-67	97.9
AWQ77950.1\|2318137_2318752_-	excalibur calcium-binding domain protein	A0A2H4PQM8	Staphylococcus_phage	1.1e-42	93.1
AWQ76342.1\|2319063_2319546_+	hypothetical protein	A0A2H4PQN7	Staphylococcus_phage	3.8e-80	99.3
AWQ77679.1\|2320100_2321183_+	O-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	5.9e-206	97.8
AWQ77206.1\|2321187_2322189_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.3e-185	97.3
AWQ77128.1\|2322185_2322422_-	putative membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	2.6e-42	100.0
AWQ77529.1\|2322502_2322982_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.0e-85	99.4
AWQ76361.1\|2322962_2323733_+	prolyl oligopeptidase family protein	A0A2H4PQM6	Staphylococcus_phage	1.5e-142	98.8
AWQ76799.1\|2324110_2325703_-	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AWQ76505.1\|2326074_2327271_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.3e-218	99.5
AWQ76072.1\|2327392_2328301_+	nuclease-related domain protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AWQ78366.1\|2328512_2329346_+	aldo/keto reductase family protein	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AWQ77259.1\|2329408_2330017_-\|transposase	transposase DDE domain protein	A0ZS58	Staphylococcus_virus	1.3e-109	96.5
AWQ76854.1\|2330530_2330695_-\|transposase	putative transposase	A0A146ICT8	Staphylococcus_phage	2.9e-24	98.1
AWQ78496.1\|2331342_2331696_-	crcB-like family protein	A0A2H4PQQ7	Staphylococcus_phage	3.8e-21	94.0
AWQ78157.1\|2331692_2332058_-	crcB-like family protein	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AWQ78224.1\|2332313_2332463_-	putative membrane protein	NA	NA	NA	NA
AWQ77665.1\|2332875_2333589_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AWQ78001.1\|2334028_2334664_-\|protease	CAAX protease self-immunity family protein	NA	NA	NA	NA
AWQ77819.1\|2334959_2335403_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AWQ78179.1\|2335389_2335533_-	hypothetical protein	NA	NA	NA	NA
AWQ76805.1\|2335945_2336416_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	8.8e-82	98.1
AWQ77409.1\|2336614_2336839_+	hypothetical protein	NA	NA	NA	NA
2336564:2336580	attR	NA	NA	NA	NA
AWQ76156.1\|2337114_2337969_+	mannosyl-glycoendo-beta-N-acetylglucosaminidase family protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AWQ77241.1\|2338055_2339348_-	arsenite/antimonite efflux pump membrane family protein	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AWQ76657.1\|2340184_2341687_+	FAD-NAD(P)-binding family protein	A0A2H4PQX2	Staphylococcus_phage	1.9e-29	98.6
AWQ78273.1\|2342167_2343211_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	5.3e-196	98.8
AWQ78064.1\|2343217_2343850_+	riboflavin synthase, alpha subunit	A0A2H4PQS5	Staphylococcus_phage	5.5e-111	98.6
AWQ76325.1\|2343860_2345042_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	5.6e-226	99.5
AWQ76530.1\|2345054_2345519_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AWQ77649.1\|2345640_2346642_-	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
AWQ76165.1\|2346875_2347703_+	alpha/beta hydrolase fold family protein	NA	NA	NA	NA
AWQ78082.1\|2348273_2348675_+	HTH-type transcriptional regulator rot	NA	NA	NA	NA
AWQ78002.1\|2348797_2349361_-	rRNA methylase family protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AWQ76498.1\|2349357_2350311_-	radical SAM superfamily protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AWQ77753.1\|2350420_2351602_+	major Facilitator Superfamily protein	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
AWQ78390.1\|2351892_2354307_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
AWQ77901.1\|2354328_2354640_+	rhodanese-like domain protein	A0A2H4PQR9	Staphylococcus_phage	4.8e-52	99.0
AWQ78105.1\|2354965_2361526_+	sasC/Mrp/FmtB intercellular aggregation domain protein	A0A2H4PQU6	Staphylococcus_phage	2.3e-305	98.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029671

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection