CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029715	Serratia marcescens strain AR_0131 chromosome, complete genome	0 crisprs	csa3,RT,DEDDh,cas3,WYL,DinG,cas14j	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1933809 : 1968697

Salmonella_phage(25.71%)

terminase,portal,capsid,tail,integrase,head,plate

attL 1934909:1934930|attR 1967870:1967891

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWS68581.1\|1933809_1934712_-	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	5.7e-37	38.8
1934909:1934930	attL	NA	NA	NA	NA
AWS68582.1\|1935039_1935258_-	transcriptional regulator	S4TNZ3	Salmonella_phage	6.8e-21	62.5
AWS68583.1\|1935337_1936507_-	phage late control D family protein	Q6K1G4	Salmonella_virus	3.0e-163	74.7
AWS71418.1\|1936503_1936989_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	3.5e-49	60.5
AWS68584.1\|1937001_1939449_-\|tail	phage tail tape measure protein	U5N0T4	Enterobacteria_phage	1.7e-256	64.9
AWS68585.1\|1939441_1939561_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	4.5e-11	74.4
AWS68586.1\|1939593_1939896_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.9e-29	79.3
AWS68587.1\|1939953_1940472_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.0e-75	77.3
AWS68588.1\|1940488_1941658_-\|tail	phage tail protein	S4TRX2	Salmonella_phage	6.2e-185	81.4
AWS68589.1\|1942403_1942622_+	hypothetical protein	NA	NA	NA	NA
AWS68590.1\|1942790_1943315_-\|tail	tail assembly chaperone	F1BUK2	Cronobacter_phage	6.2e-36	45.3
AWS68591.1\|1943316_1945413_-	hypothetical protein	Q858V4	Yersinia_virus	7.0e-62	55.5
AWS68592.1\|1945419_1945953_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	6.3e-76	76.0
AWS68593.1\|1945945_1946854_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.5e-101	64.9
AWS68594.1\|1946858_1947209_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	8.9e-39	70.7
AWS68595.1\|1947205_1947847_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	2.9e-67	60.6
AWS68596.1\|1948093_1948534_+	hypothetical protein	NA	NA	NA	NA
AWS68597.1\|1948523_1948961_+	hypothetical protein	NA	NA	NA	NA
AWS68598.1\|1949036_1949483_-	phage virion morphogenesis protein	O80313	Escherichia_phage	2.9e-50	73.6
AWS68599.1\|1949475_1949943_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	4.5e-62	75.5
AWS68600.1\|1950032_1950470_-	hypothetical protein	O80310	Escherichia_phage	1.2e-13	42.4
AWS68601.1\|1950466_1950976_-	lysozyme	A0A218M4K3	Erwinia_phage	1.5e-63	73.7
AWS68602.1\|1950959_1951169_-	hypothetical protein	E5G6N0	Salmonella_phage	9.8e-09	39.1
AWS68603.1\|1951171_1951375_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	1.1e-20	71.6
AWS68604.1\|1951374_1951881_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.5e-63	71.4
AWS68605.1\|1951974_1952718_-\|terminase	terminase	Q6K1I5	Salmonella_virus	2.9e-71	63.2
AWS68606.1\|1952720_1953920_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	9.3e-152	75.9
AWS68607.1\|1953990_1954836_-\|capsid	capsid scaffolding protein	Q94MB7	Escherichia_virus	9.6e-103	66.7
AWS68608.1\|1954996_1956769_+	oxidoreductase	A0A0M4RE51	Salmonella_phage	3.8e-287	81.3
AWS68609.1\|1956765_1957797_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	6.3e-165	81.3
AWS68610.1\|1958108_1959251_-	hypothetical protein	NA	NA	NA	NA
AWS68611.1\|1959247_1960897_-	ATP-dependent endonuclease	NA	NA	NA	NA
AWS68612.1\|1961082_1961811_-	hypothetical protein	Q37850	Escherichia_phage	9.8e-72	57.0
AWS68613.1\|1961900_1964189_-	replication endonuclease	S4TTC1	Salmonella_phage	1.5e-267	60.5
AWS68614.1\|1964185_1964467_-	hypothetical protein	A0A218M4I8	Erwinia_phage	7.7e-25	56.8
AWS68615.1\|1964469_1964685_-	hypothetical protein	NA	NA	NA	NA
AWS68616.1\|1964687_1964987_-	hypothetical protein	NA	NA	NA	NA
AWS68617.1\|1964979_1965237_-	DUF2732 domain-containing protein	NA	NA	NA	NA
AWS68618.1\|1965300_1965801_-	replication protein B	A0A0F7LBQ6	Escherichia_phage	2.2e-67	72.3
AWS68619.1\|1965992_1966268_-	hypothetical protein	Q1JS60	Enterobacteria_phage	1.5e-33	71.1
AWS68620.1\|1966393_1966693_+	XRE family transcriptional regulator	Q1JS61	Enterobacteria_phage	2.2e-38	77.8
AWS68621.1\|1966780_1967764_+\|integrase	integrase	Q83VS6	Escherichia_phage	4.1e-121	64.8
AWS68622.1\|1967908_1968697_-	phosphate starvation-inducible protein PhoH	R4II13	Cronobacter_phage	9.2e-92	76.3
1967870:1967891	attR	NA	NA	NA	NA

DBSCAN-SWA_2

3373710 : 3415087

Erwinia_phage(46.15%)

portal,capsid,lysis,tRNA,tail,integrase,head,plate

attL 3379891:3379941|attR 3415180:3415230

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWS69828.1\|3373710_3374724_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.3e-110	59.5
AWS69829.1\|3375049_3375265_+	30S ribosomal protein S21	NA	NA	NA	NA
AWS69830.1\|3375401_3377150_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	6.6e-74	38.8
AWS69831.1\|3377307_3379149_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
AWS69832.1\|3379224_3379713_-	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
3379891:3379941	attL	NA	NA	NA	NA
AWS69833.1\|3380136_3380367_-	transcriptional regulator	Q37973	Salmonella_virus	9.4e-21	64.5
AWS69834.1\|3380450_3381611_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	7.4e-138	65.4
AWS69835.1\|3381607_3382093_-\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.5e-47	65.7
AWS69836.1\|3382092_3384921_-\|tail	phage tail tape measure protein	Q7Y4C8	Escherichia_virus	2.8e-106	39.1
AWS69837.1\|3384913_3385036_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	1.5e-09	72.5
AWS69838.1\|3385068_3385350_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	9.1e-26	69.0
AWS69839.1\|3385404_3385914_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.7e-70	76.2
AWS69840.1\|3385929_3387099_-\|tail	phage tail protein	F1BUU3	Erwinia_phage	4.0e-184	81.7
AWS69841.1\|3387374_3387794_-\|tail	tail fiber assembly protein	U5P083	Shigella_phage	2.6e-16	38.7
AWS69842.1\|3387799_3390460_-	hypothetical protein	Q858V4	Yersinia_virus	9.8e-61	54.6
AWS69843.1\|3390466_3391000_-\|tail	phage tail protein I	Q858V5	Yersinia_virus	1.6e-76	76.0
AWS69844.1\|3390992_3391901_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.4e-107	67.9
AWS69845.1\|3391905_3392256_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	2.4e-36	65.5
AWS69846.1\|3392252_3392468_-	hypothetical protein	NA	NA	NA	NA
AWS69847.1\|3392534_3393164_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.1e-76	74.3
AWS69848.1\|3393245_3395075_-	hypothetical protein	E5E3R2	Burkholderia_phage	3.7e-11	24.7
AWS69849.1\|3395157_3395607_-	phage virion morphogenesis protein	F1BUP7	Erwinia_phage	7.2e-41	61.1
AWS69850.1\|3395593_3396070_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.1e-50	65.4
AWS69851.1\|3396165_3396594_-\|lysis	LysB family phage lysis regulatory protein	F1BUQ1	Erwinia_phage	4.6e-13	36.0
AWS69852.1\|3396590_3397103_-	lysozyme	A0A218M4K3	Erwinia_phage	6.7e-59	66.3
AWS69853.1\|3397086_3397296_-	hypothetical protein	A0A218M4L5	Erwinia_phage	2.0e-09	43.5
AWS69854.1\|3397300_3397504_-\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	1.8e-20	68.7
AWS69855.1\|3397503_3397992_-\|head	head completion/stabilization protein	F1BUQ6	Erwinia_phage	1.1e-39	54.3
AWS69856.1\|3398085_3398745_-	hypothetical protein	F1BUQ7	Erwinia_phage	5.2e-80	69.4
AWS69857.1\|3398747_3399932_-\|capsid	phage major capsid protein, P2 family	F1BUQ8	Erwinia_phage	4.5e-159	78.6
AWS69858.1\|3399974_3400790_-\|capsid	phage capsid protein	S4TP53	Salmonella_phage	7.1e-71	53.5
AWS69859.1\|3400932_3402705_+	oxidoreductase	F1BUR2	Erwinia_phage	5.2e-292	82.2
AWS69860.1\|3402704_3403739_+\|portal	phage portal protein	F1BUR7	Erwinia_phage	1.6e-163	80.7
AWS71484.1\|3403783_3404125_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AWS69861.1\|3404124_3404379_-	type II toxin-antitoxin system HicA family toxin	R4JMD3	Burkholderia_phage	1.6e-16	48.8
AWS69862.1\|3404763_3405846_-	restriction endonuclease	NA	NA	NA	NA
AWS69863.1\|3405842_3407639_-	methylase	NA	NA	NA	NA
AWS69864.1\|3407799_3408012_-	hypothetical protein	NA	NA	NA	NA
AWS69865.1\|3408050_3410267_-	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	3.1e-238	58.3
AWS69866.1\|3410263_3410545_-	hypothetical protein	A0A218M4I8	Erwinia_phage	4.5e-17	51.2
AWS69867.1\|3410667_3411249_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	1.7e-58	58.4
AWS69868.1\|3411254_3411473_-	hypothetical protein	Q6K1F5	Salmonella_virus	5.6e-15	56.9
AWS69869.1\|3411472_3411784_-	hypothetical protein	NA	NA	NA	NA
AWS69870.1\|3411783_3412026_-	DUF2732 domain-containing protein	NA	NA	NA	NA
AWS71485.1\|3412089_3412392_-	hypothetical protein	NA	NA	NA	NA
AWS71486.1\|3412403_3412583_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	1.1e-05	51.0
AWS69871.1\|3412593_3413103_-	hypothetical protein	A0A1S6L008	Salmonella_phage	4.2e-45	53.6
AWS69872.1\|3413133_3413355_-	regulator	NA	NA	NA	NA
AWS69873.1\|3413464_3414049_+	phage repressor protein CI	F1BUS8	Erwinia_phage	6.3e-29	40.2
AWS69874.1\|3414052_3415087_+\|integrase	integrase	F1BUS9	Erwinia_phage	1.5e-121	62.6
3415180:3415230	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4989969 : 4998625

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWS71200.1\|4989969_4991073_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.6e-60	43.4
AWS71201.1\|4991076_4992336_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.6e-98	48.6
AWS71202.1\|4992754_4993945_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	2.8e-140	61.1
AWS71203.1\|4994680_4994944_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.5e-17	55.0
AWS71204.1\|4994940_4995156_+	hypothetical protein	NA	NA	NA	NA
AWS71205.1\|4995142_4995688_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	5.5e-27	60.7
AWS71206.1\|4995684_4995948_+	hypothetical protein	NA	NA	NA	NA
AWS71207.1\|4995944_4996280_+	hypothetical protein	NA	NA	NA	NA
AWS71208.1\|4996291_4998625_+	DNA primase	Q7M2A8	Enterobacteria_phage	3.3e-262	60.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage