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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029748 Escherichia coli strain 2016C-3878 plasmid pMCR1-PA, complete sequence 0 crisprs csa3 0 0 15 0
CP029747 Escherichia coli strain 2016C-3878 chromosome, complete genome 0 crisprs DEDDh,c2c9_V-U4,DinG,cas3,csa3,PD-DExK,WYL 0 0 8 0

Results visualization

1. CP029748
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 27867 26 Escherichia_phage(36.36%) transposase,integrase attL 13316:13375|attR 17281:18101
DBSCAN-SWA_2 41089 : 42094 1 Aeromonas_phage(100.0%) NA NA
DBSCAN-SWA_3 45199 : 46237 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_4 60920 : 62705 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 82142 : 132663 57 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_6 138596 : 140754 2 Burkholderia_phage(50.0%) NA NA
DBSCAN-SWA_7 147019 : 175899 28 Escherichia_phage(50.0%) transposase,protease NA
DBSCAN-SWA_8 180850 : 182516 2 Archaeal_BJ1_virus(50.0%) NA NA
DBSCAN-SWA_9 206869 : 207091 1 Vibrio_virus(100.0%) NA NA
DBSCAN-SWA_10 215191 : 216088 1 Yersinia_phage(100.0%) NA NA
DBSCAN-SWA_11 219509 : 223557 5 Macacine_betaherpesvirus(66.67%) NA NA
DBSCAN-SWA_12 234718 : 238877 5 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_13 242772 : 244775 2 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_14 247970 : 258483 12 Enterobacteria_phage(33.33%) transposase,bacteriocin,protease,integrase attL 251238:251251|attR 263812:263825
DBSCAN-SWA_15 272117 : 274511 2 Salmonella_phage(100.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP029747
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 956377 : 1014830 77 Enterobacteria_phage(48.21%) tail,portal,protease,head,capsid,tRNA,lysis,integrase,terminase,holin attL 966528:966574|attR 1015253:1015299
DBSCAN-SWA_2 1369640 : 1379082 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_3 1491225 : 1502483 10 Acanthocystis_turfacea_Chlorella_virus(25.0%) NA NA
DBSCAN-SWA_4 1549615 : 1592031 32 uncultured_Caudovirales_phage(44.44%) transposase,plate NA
DBSCAN-SWA_5 2928626 : 2941554 6 Escherichia_phage(83.33%) integrase attL 2934129:2934142|attR 2942599:2942612
DBSCAN-SWA_6 3318434 : 3408643 102 Burkholderia_virus(37.5%) tail,plate,head,tRNA,integrase attL 3357145:3357160|attR 3405974:3405989
DBSCAN-SWA_7 4414792 : 4420860 8 Stx2-converting_phage(57.14%) transposase NA
DBSCAN-SWA_8 4920907 : 4937399 21 Burkholderia_phage(35.29%) tail,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage