CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029773	Stenotrophomonas maltophilia strain SJTL3 chromosome, complete genome	9 crisprs	DEDDh,csa3,WYL,cas3,PD-DExK,Cas9_archaeal,DinG	0	1	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029773_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_2

733538-733678

Orphan

Consensus_repeat	Method
GCCGCGTATCCGCTCCTGGTAGGTGCCGAGCTTGCTCGGCACGCTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_2

>merge|CP029773|2|733538-733678|CRISPRCasFinder
GCCGCGTATCCGCTCCTGGTAGGTGCCGAGCTTGCTCGGCACGCTCTTCGCCGGCGATTGCACACCGCATCCACGCATGGCGTGGATCTACCGTGCCGCATATCCGCTCCTGGTAGGTGCCGAGCTTGCTCGGCACGCTCT

>CP029773|2|1|733538-733678|CRISPRCasFinder
GCCGCGTATCCGCTCCTGGTAGGTGCCGAGCTTGCTCGGCACGCTCT	TCGCCGGCGATTGCACACCGCATCCACGCATGGCGTGGATCTACCGT
GCCGCATATCCGCTCCTGGTAGGTGCCGAGCTTGCTCGGCACGCTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT16908.1\|729677_731885_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273808
CP029773.1\|AWT16907.1\|729293_729488_+\|hemin-uptake-protein-HemP	unknown	unknown	gnl\|CDD\|378463
CP029773.1\|AWT13386.1\|731889_732489_+\|Hemin-transport-protein	unknown	unknown	gnl\|CDD\|226243
CP029773.1\|AWT13390.1\|736835_737483_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226647
CP029773.1\|AWT13387.1\|732562_733489_+\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT13385.1\|726540_727839_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
CP029773.1\|AWT13393.1\|739160_740432_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP029773.1\|AWT13382.1\|723275_724193_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176164
CP029773.1\|AWT13389.1\|734322_736839_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|225669
CP029773.1\|AWT13381.1\|722762_723194_-\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT13383.1\|724286_725468_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP029773.1\|AWT13395.1\|741642_742038_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
CP029773.1\|AWT13384.1\|725549_726515_-\|ribokinase	unknown	unknown	gnl\|CDD\|238579
CP029773.1\|AWT13388.1\|733727_734219_-\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT16906.1\|728032_729004_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381369
CP029773.1\|AWT13392.1\|738257_739004_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP029773.1\|AWT13391.1\|737558_738203_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
CP029773.1\|AWT13394.1\|740727_741429_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239946
CP029773.1\|AWT13396.1\|742070_742820_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
CP029773.1\|AWT13397.1\|743040_744201_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT16908.1\|729677_731885_+\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273808	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein. This model represents a family of TonB-dependent outer membrane receptor/transporters acting on iron-containing proteins such as hemoglobin, transferrin and lactoferrin. Two subfamily models with a narrower scope are contained within this model, the heme/hemoglobin receptor family protein model (TIGR01785) and the transferrin/lactoferrin receptor family model (TIGR01776). Accessions which score above trusted to this model while not scoring above trusted to the more specific models are most likely to be hemoglobin transporters. Nearly all of the species containing trusted hits to this model have access to hemoglobin, transferrin or lactoferrin or related proteins in their biological niche. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	6.62346e-126
CP029773.1\|AWT16907.1\|729293_729488_+\|hemin-uptake-protein-HemP	gnl\|CDD\|378463	pfam10636, hemP, Hemin uptake protein hemP. This is a bacterial family of proteins that are involved in the uptake of the iron source hemin.	2.47066e-16
CP029773.1\|AWT13386.1\|731889_732489_+\|Hemin-transport-protein	gnl\|CDD\|226243	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism].	0.00218906
CP029773.1\|AWT13390.1\|736835_737483_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	4.48171e-96
CP029773.1\|AWT13394.1\|740727_741429_-\|hypothetical-protein	gnl\|CDD\|239946	cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	1.99376e-79
CP029773.1\|AWT13385.1\|726540_727839_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	8.09563e-143
CP029773.1\|AWT13393.1\|739160_740432_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.47327e-48
CP029773.1\|AWT13382.1\|723275_724193_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.66873e-83
CP029773.1\|AWT13389.1\|734322_736839_-\|oxidoreductase	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	5.53302e-178
CP029773.1\|AWT13383.1\|724286_725468_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.91587e-71
CP029773.1\|AWT13395.1\|741642_742038_+\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	2.33259e-49
CP029773.1\|AWT13384.1\|725549_726515_-\|ribokinase	gnl\|CDD\|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	8.56006e-99
CP029773.1\|AWT13391.1\|737558_738203_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	1.42633e-86
CP029773.1\|AWT16906.1\|728032_729004_+\|aldo/keto-reductase	gnl\|CDD\|381369	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR). Voltage-gated potassium channel subunit beta (KCAB) from Arabidopsis thaliana and Egeria densa are founding members of aldo-keto reductase family 6 member C1 (AKR6C1) and C2 (AKR6C2), respectively. KCAB, also called Shaker channel b-subunit, or K(+) channel subunit beta, or potassium voltage beta 1, or KV-beta1, or KAB1, is a probable accessory potassium channel protein which modulates the activity of the pore-forming alpha subunit.	0
CP029773.1\|AWT13392.1\|738257_739004_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.31743e-76
CP029773.1\|AWT13396.1\|742070_742820_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	3.64799e-67
CP029773.1\|AWT13397.1\|743040_744201_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.99858e-81

>CP029773.1|AWT13387.1|732562_733489_+|hypothetical-protein
MKFQTASALLVLAASGVASAQPSDIARDHDSILAMQGEYTVDFAFDETVLLKPGYERAPAMRSGGNEVVIVVEDTPKRIVLQHLLLDEKSGHITKHWRQDWVYEAPNRFEFSADQTWKVSSIPAAVNQGAWTQCVYEVSDAPRYCGTGTWTYTNNVPSWTSDLSWRPLPRREYTKRSDYNALAVINRHTLTPNGWTHEQFNTKVQRNADGSQVEIAREFGFNDYVKTTEVDFTPARNYWKATAGYWAKVRQRWDGFLGQAPGVHLKTKIDGMAMIIPMFTQAEEIQAGKKVKDKQIDDVFAKYVEKAQ
>CP029773.1|AWT13386.1|731889_732489_+|Hemin-transport-protein
MSRALSARRNDSIAAPYSAAWPTPAQLATLGTVLCLYHADGNELGGWRQAVRVHACQGVDSEGLRESLCFLDGRGRCVWRLYLLPDSDFLAWDRLVAALPPGPEHDSDGSVGERLWRRLAGHLGGQRWRLCALRLHAADDGRTLAASLSTLSSLGAATARRIARLEGAEGELAIDDCCCADAARRQAPRIPGDLPLIRL
>CP029773.1|AWT16908.1|729677_731885_+|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALPLSAHAAAAAAPGAREFDRVQVTATRTERAVSDVAATVDVIDREQMDRHLVQDIKDLVRYEPGLSVTRSATRFGLDGFRIRGLDGNRVRIQTDGIVMPTRFDIGSFASSNRNFTDLDTLKRVEIVRGPASSLYGSDALGGVVAFVTKDPADYLKDGKNSYFGLKFGYDGEWKGLLGGATAAFGGDHWSGLVNVNHHQGQETDNKGTVRSDNDTRTASNPQDRDGRSLLSKLVYAPSEDQRFRLTVEGNEDTTDTNVLSAIASVAPRPGAMAAATGMKSHDTQKRTRVSFAHEMDALDQPFADSLHWQVYAQNSETRQQTDETRTDGSRRHRVFSFDQHAYGLQAQFNKAFSTGAVEHALTYGFEGTRTEIRQKRDGYQVSKAGVVSNTVVPDTFPVRDFPISKTTELGLYAQDEMRLADGKLSLVPGVRVDRYELKPEVDSIFAEDNPTTAVAQLKKTSVSPKLGMVWRFTDQWSLFAGYARGFRSPPYNDVNIGLTNVAFGYTAIANPDLKPETSDGYELGLRFIAPAAYVSVSGYYNDYKDFIQSNVDTGRNAQGLTVFQSQNIADARIYGAEMKAGIEFGELSPALKGWALRSALAWSRGDNRTDDEPLASVDPLRGTLGLMYDTDSWGVELAGTFVQRKKRLPPPAAQTNPNAPAPFVYQPAGYGVLDLMAHWNFAPGATFNVGVFNLADKRYIEWSSITPSLITNRALSDRFSSPGRTFSASLAVSW
>CP029773.1|AWT16907.1|729293_729488_+|hemin-uptake-protein-HemP
MNAQPVLLRPETLTLRDRPVRVVPPEEVIDSEALLKGRREILIQHGDRFYRLRHTSNDKLILTK
>CP029773.1|AWT16906.1|728032_729004_+|aldo/keto-reductase
MQYRRLGSTGLPISALSFGAWVTFGDQIPRDEARNLVAAAWDHGVNFFDNAEGYANGRAEQVMGDVITDLRLPRDGFCVSSKVFFGSAKDPRPTQRGLSRKHVTDACHAALKRLRVDYLDLYYCHRPDPDAPIAETVHAMDTLVRQGKILYWGTSEWSAAQIQQALDIAEARNLQGPSMEQPQYNLLHRERVEVEYAPLYAGAGLGTTIFSPLASGLLTGKYDQGIPVDARLGREGMEWLHALVLGDDTEARLGQVRRFSEVARALGHAPATLAIAWCLRNPNVSSVILGASRVSQLLQNLQALDVLEQVDAAGWAQVEAVFA
>CP029773.1|AWT13385.1|726540_727839_-|NupC/NupG-family-nucleoside-CNT-transporter
MVEGLGRIGFGLFGLAVLIGITWLFSNNKRAVDWKLVATGITLQIAFAALVILVPGGRDVFDALGKGFVKILSYVNEGSGFIFGSLMDTKNYGFIFAFQVLPTIIFFSALMGVMYHLNVMQGIVRVMAWSITKVMRVSGAETTSVCASVFIGQTEAPLTVRPYIAKMTQSELLTMMIGGMAHIAGGVLAAYVGMLGGGDPAQQAFYAKHLLAASIMAAPATLVVAKLLIPETGTPLTRGTVKMEVEKTSSNIIDAAAAGAGDGLKLALNIGAMLLAFIALIALLNAPLTWIGDVTGLAAAIGKPTNLSTIFGYVLAPIAWVIGTPWADATTVGSLIGQKVVINEFVAYTELSQIVNGQIAGVSLSEEGRLIATYALCGFANFSSIAIQIGGIGGLAPERRHDLAKFGLRAVLGGTIATFMTATIAGVLTHFS
>CP029773.1|AWT13384.1|725549_726515_-|ribokinase
MSSSVVVVGSFNVDHVWRCESLPAPGATIAGRYSTGPGGKGFNQAVAACRAGADTHFVCALGDDAGGSTARELAAQDGFALIAEATSEPTGTAGIYVDARGRNTIVIGPGANAALSTDFLQQQQGLLTGAKVVLVQLESPVQTIEAALATAREAGVTTVLNTAPADAPSTIGLLKLADVITPNETEFAALLGRHVGERVDANDVAALDGASLHALCRKLVGNGTVVVTLGSVGVFVSHADENLRGDTQPYYRVGAEQVQAIDTTGAGDAFNGALAASLAQVADAPFARHVRFANQFAGRSTEKEGAAAAMPRFTPADVEVK
>CP029773.1|AWT13383.1|724286_725468_+|MFS-transporter
MSSLDSAVATVHANARARLSVVLLAVSAFVIVTTEFLIVGLLPALARDLGIGIARAGQLVTLFAFTVMLAGPPLTALLSHVSRRRLFVVILLLFAASNALAAMATQPWLLALARVLPALALPVFWGTASETAAQLAPAGQGGRAVARVYLGITAAMLFGIPLGTLAADALGWRGSFWLLAALSLLMAGALATWMPDTEAGPRRALGEQARMLRQPPLLGHVLLSVLVFTAMFAAYTYLADVLERLMQVPAAQVGWWLMGFGAVGLIGNALGGRWVDRAPLGATLVFCAVLALGILASVGMAGHGTFVLIALASWGVAHTALFPLCQVRVMRAAPRAQALAGTLNVSAANAGIGLGALLGGGAIERWGLDTLGVVAAAVALLAIAAGLLLRRWQ
>CP029773.1|AWT13382.1|723275_724193_-|LysR-family-transcriptional-regulator
MLPTERLRGIEAFVATADAGSFTAAAERLHLTSSAVGKTIARLEARLGARLFERSTRRLRLTEAGEGFYRTCVRVLGELADAESVLAAHADAPVGRLRVDAPATFGRLKVWPLLLQLADAFPQLRPQVTFSDRFIDLTEDGIDLAVRIGGPEPLPATLGSRLLGYECLRFCASPAYLQQHGLPTSAAELTDHDGVLFGRADGSIGPWQVADAGRRSTPLQARARLVVGSAEAQVAAVEAGFGIAQLASWLVDDALARGSLVSILPALDCRGLPLRLLWPQGRQRLPRVDVALDRLGSGLRIDPPR
>CP029773.1|AWT13381.1|722762_723194_-|hypothetical-protein
MDGFPWLLIAAAGSAIAALLHIGCIAFGAPWYERFGAGPRMVRLAHAGHWWPPLMTAGITALLVAWALYALAAAGWHAPLPASRLVLPGIAALLLLRAMMGFGLALFRPGYNGTRFWVVSSLVCLGLGLAFAAGTRQAWQSLG
>CP029773.1|AWT13388.1|733727_734219_-|hypothetical-protein
MKMKYGLCLRILLASSPLFAAVLPAGARAADGHVPDAVQAFVLETVLADEAQAFHEGHPTYLVPASVSRTRSDAGVVADLRAEFDRFYRGQPKPRKEVAHMAILVAQTALLLPDRSACSTDRVRCHEAILGVRTRDDEASLQATLRAFQDAGLDLTTLSGPAS
>CP029773.1|AWT13389.1|734322_736839_-|oxidoreductase
MNLLRHAWRALRREALAGDLLTVFAALVLGVAVMTAVGTLVNRVNLALTGSAAEMLGGDLGIAGRDDPPQAFAEEAQRRGLAYTRIASFGSVLFHGEASQMASIKAVQAGYPLRGTLRVRATPGGALITDAGMPPKGQAYADPRLLQGLGLKAGDALEFGAGTLRIAGIIEAEPDTGGDLLTLSPTLLVNRADVEGTGLLGPGSRINYRLMFAGAADQIAALRQWLLPQVKGLRLLSVDDTQRGVRQAFDLAGRFLGLSALLAVLLAGVATALAANRFALRRIDQVAILRCLGARQRDILSGLALQLLMLAVPACALGIGLGMAAQEGLVQVLGSLVPQRLPLPEAMPALTGAGIGLLLLFGFGLPPLLRLRGVPPMRVLNRSFAALPPASLLAYVAALAASLLLAVQVTGDLKLALWVLGGLAALAVAAGVVGFVLLQLLRGLQHRLHGHWRLGLAALTRRRMLAVMQLVGLSLSLCALLLLAVTGPGLLQQWRERLPADTPNYFLINIQPEQRDSVLATLRGLGANDASIEPMATGRLIAINGKPPLRVDRSPEQNGQPASSEAQRDDDDENRPLNFSWRSSFPPANTLVNGTFWKADSTAAEASVEIGWAKRYGVYPGDRITIAVGEQEREFTVTSVRKADWNTFRPNFFVLLNPNAVGDTPHNLLSAFHLPAGKAAGLGELVRAQPNLSLLDVDAVISQVRDVMERVAQAVQLVMVFSLLAGMLVLLAALQATAGERRYDSAVLRTLGATRRQLRGAVLVEFGALGTLAALLAVGAAAAIGVAVSQKVFELPLLPPWPGLLIGGVVGIGLSLLAGWWGTRAILHTPPALALREA
>CP029773.1|AWT13390.1|736835_737483_-|ABC-transporter-ATP-binding-protein
MQGPEGEVHILDNITLTVHEGTSAAIVGASGSGKTTLLGLLAGLDLPSRGRIALAGQDLSALDEEARAQLRAREVGFVFQSFHLLPALTAAENVALPLELAGREDRARVDEVLAQVGLAHRARHYPRQLSGGEQQRVALARAFVTRPRILFADEPTGSLDHATGQHISDLLFELNAGSGTTLVLVTHDLRLAQRCQYIHRIDDGRLLPVERGAQA
>CP029773.1|AWT13391.1|737558_738203_+|arylesterase
MRKTGWSRRAGAMMVLLLGFLLLPGLACAKGPAGTVLVLGDSLSAAHNIPADAGWVSLLQQRVRQQSKTPARIVNASMSGETTAGALTRLPGLLAKEKPTVVVIALGGNDALRGLTPAQVQGNLEKMVQASQKAGAKVLLLGIDVPPNYGPAYRQRLAAAYKALATQYKVPLLPFLLEGVALQPGMMQADGLHPTAQAQPKVLDNVWPLLRPLL
>CP029773.1|AWT13392.1|738257_739004_+|DNA-binding-response-regulator
MFHKAEVRGNHMRQTKETSGLVLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEVCRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRERRQVGSEVLKVADLVLDPVSMRATRAGTELQLSPIGLRLLTILMRESPRVVTRQEIEREIWGNGLPDSDTLRSHLYNLRKIIDKPFDRPLLHTVQSAGYRIADIAQPMA
>CP029773.1|AWT13393.1|739160_740432_+|two-component-sensor-histidine-kinase
MPHGLPRKIRIAFILQAVLASLGILLGAWLVSLVIKHSLVGAALREEATYFWTLHEASPVQPPPNTQNIRGYLLESGQSALSLPANLRNLEPGFHELPKDDQLVLVDVRPAGRLYLVFLRSRAEMLAFWFGIVPVLLTLLAVYGASWVTYRASKRLVSPVNWLARRVSRWDPGHPEAADLEPNKLPADMQGETRQLAAALHSLANRVSAHVARERNFTRDASHELRTPLTVIRVASDMALGDETLQPRLRRSLQRIQRAGRDMEAVIDAFLILAREADVEPQIELFDVNDIVRYEVDNANELLGTRPVSVHLHSDGPVQLHAPPRVLQVVVSNLVRNACSYTDEGRIDVHVLNDRVVVRDTGIGMSAEALSRAFEPFYRAEPSRPQGTGLGLSIVRRLCDRFGWKVSLASEPGEGTEATVIFR
>CP029773.1|AWT13394.1|740727_741429_-|hypothetical-protein
MSRRRTCLLMLGLLTAAPLAQALSPAKPPRVPEQVSNVAWAGDMAHFASADQANPPPRGGIEFIGSSSIRFWESLATDFPGQPVFNRGFGGSEVRDSIWYADRIVVPYAPCKVFFYAGDNDLNSGRSAVQVRDDVVAFVQRVHRDLPKTKVEYLSIKPSPSRAHLLPAINEANTLIKAALAKLPNTGFTDVYTPMLGADGQPDATLFREDMLHMTPAGYAIWTRALAPKVKCD
>CP029773.1|AWT13395.1|741642_742038_+|diacylglycerol-kinase
MADQFGHLPRGPRRIFQAARWSWQGLRAAWLHESSFRLEVYLLILLTPVAIWLGQTPVERALLIGSMLLVLAMELANSAIEAVIERYGSEIHELAGRAKDMGSAAVFVLMMNVLLCWALVVVPHAMAGNYG
>CP029773.1|AWT13396.1|742070_742820_+|TerC-family-protein
MSFEFLADPNAWVTLFTLSALEIVLGIDNLVFISIAVSKLPEERRPFARKLGIAVACITRIALLVSLAYLAHMSANLFTVAGMGISIRDLVLIVGGLFLIIKGYMEIKELITGGEDENPATSKASGVFGMVILQIAIIDIVFSLDSVITAVGIADHIPVMVAAILLSVLVMLLAANPLGRFIDANPTVKMLALAFILLIGAVLILDGLDVHVPKPYIYAAMGFSVLVEWLNLLMRRRARDHHVPGAGDW
>CP029773.1|AWT13397.1|743040_744201_+|MFS-transporter
MNSRAALLALAVGAFAIGTTEFAPMGLLPVIADGVGVNIPTAGMLITAYAVGVMLGAPVMTLLMGRFGKRTALMLLMSIFVVGNLLSALAPNYGLLLLSRLVTSLNHGAFFGIGAVVAASLVPKDKQAAAVATMFMGLTIANIGGVPLATWVGQQLGWRLSFAGTAVLGLVAITALGLALPASAPGPRPDVRRELRAILQPQVLLAMATTVLGAGAMFTLYTYVAPVLTELTGASNAFIAMSLALIGIGFTFGNGIGGRMADWSLDGATRILLAVLAVLMFVLPLAFMHHATAALGGLLFGAATFAIVPPLQIRVMQAASEAPGLASSINVGAFNLGNAVGAALGGAVISSGLGYAAIPVAGGLLAASGLLLAWLGRPRTAVAEAC

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Crispr_ID: CP029773_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_3

789641-789763

Orphan

Consensus_repeat	Method
TGCACTGGCAGGTGCGGACCTTGGTCCGCACGTCTCTGCCGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_3

>merge|CP029773|3|789641-789763|CRISPRCasFinder
TGCACTGGCAGGTGCGGACCTTGGTCCGCACGTCTCTGCCGGCCAGCGGCCGGCACTACCCCCATCCACGCATGGTAGGTGCACTGGCAGGTGCGGACCTTGGTCCGCACGCCTCTGCCGGCC

>CP029773|3|2|789641-789763|CRISPRCasFinder
TGCACTGGCAGGTGCGGACCTTGGTCCGCACGTCTCTGCCGGCC	AGCGGCCGGCACTACCCCCATCCACGCATGGTAGG
TGCACTGGCAGGTGCGGACCTTGGTCCGCACGCCTCTGCCGGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT16911.1\|794358_794844_-\|asparaginase	unknown	unknown	gnl\|CDD\|223330
CP029773.1\|AWT13446.1\|792495_794238_+\|peptidase-S8	unknown	unknown	gnl\|CDD\|173820
CP029773.1\|AWT16910.1\|781817_782399_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
CP029773.1\|AWT13443.1\|789790_790210_-\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT13435.1\|780885_781821_-\|exodeoxyribonuclease-IX	unknown	unknown	gnl\|CDD\|235591
CP029773.1\|AWT13444.1\|790332_790884_+\|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl\|CDD\|213809
CP029773.1\|AWT13442.1\|788090_789551_+\|NAD(P)-transhydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|376743
CP029773.1\|AWT13447.1\|794923_795259_-\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
CP029773.1\|AWT13441.1\|787773_788094_+\|NAD(P)(+)-transhydrogenase	unknown	unknown	gnl\|CDD\|378941
CP029773.1\|AWT13449.1\|795926_797201_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179791
CP029773.1\|AWT13434.1\|780334_780889_-\|DNA-mismatch-repair-protein-MutT	unknown	unknown	gnl\|CDD\|239516
CP029773.1\|AWT13437.1\|785104_786184_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
CP029773.1\|AWT13440.1\|787091_787676_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236367
CP029773.1\|AWT16912.1\|798409_799192_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
CP029773.1\|AWT13450.1\|797197_797770_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239264
CP029773.1\|AWT13448.1\|795255_795849_-\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
CP029773.1\|AWT13436.1\|782730_785052_+\|DUF1631-domain-containing-protein	unknown	unknown	gnl\|CDD\|377917
CP029773.1\|AWT13439.1\|786768_787095_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378740
CP029773.1\|AWT13438.1\|786303_786765_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378633
CP029773.1\|AWT13445.1\|790943_792038_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT16911.1\|794358_794844_-\|asparaginase	gnl\|CDD\|223330	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis].	6.49e-30
CP029773.1\|AWT13446.1\|792495_794238_+\|peptidase-S8	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	8.91051e-127
CP029773.1\|AWT13445.1\|790943_792038_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
CP029773.1\|AWT16910.1\|781817_782399_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.46222e-53
CP029773.1\|AWT13435.1\|780885_781821_-\|exodeoxyribonuclease-IX	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	2.18985e-86
CP029773.1\|AWT13436.1\|782730_785052_+\|DUF1631-domain-containing-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
CP029773.1\|AWT13442.1\|788090_789551_+\|NAD(P)-transhydrogenase-subunit-beta	gnl\|CDD\|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0
CP029773.1\|AWT13447.1\|794923_795259_-\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	0.0013207
CP029773.1\|AWT13441.1\|787773_788094_+\|NAD(P)(+)-transhydrogenase	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	3.91788e-33
CP029773.1\|AWT13449.1\|795926_797201_+\|hypothetical-protein	gnl\|CDD\|179791	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed.	0
CP029773.1\|AWT13434.1\|780334_780889_-\|DNA-mismatch-repair-protein-MutT	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	2.34696e-39
CP029773.1\|AWT13437.1\|785104_786184_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
CP029773.1\|AWT13440.1\|787091_787676_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	2.99176e-65
CP029773.1\|AWT16912.1\|798409_799192_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	5.70337e-136
CP029773.1\|AWT13450.1\|797197_797770_+\|thioredoxin	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	2.59049e-34
CP029773.1\|AWT13448.1\|795255_795849_-\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	4.35956e-60
CP029773.1\|AWT13444.1\|790332_790884_+\|putative-Fe-S-cluster-assembly-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.27493e-102
CP029773.1\|AWT13439.1\|786768_787095_-\|hypothetical-protein	gnl\|CDD\|378740	pfam11859, DUF3379, Protein of unknown function (DUF3379). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.	0.00109957
CP029773.1\|AWT13438.1\|786303_786765_-\|hypothetical-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	3.77016e-22

>CP029773.1|AWT13442.1|788090_789551_+|NAD(P)-transhydrogenase-subunit-beta
MNISTVELLDWLVKASYLVAATLFLLGLQRMASPLTARSGIRWAGLGMLLATAATFFLPELHNVPLILVALLLGAGLAWWSAGKVAITDMPQMVALYNGMGGGSAAAIGAVELLRYAFLANRDTSHWSAQALADLAARQPSGTVLLLAVVGAAIGAVSLSGSVIAWAKLDGRLDKRVTWPGQQVMNLLVALAVVVLAIIAASTLSTWAIVAFFVLALALGVLMTLPIGGADMPVVISLYNAFTGLAVSFEGYVLGNEALIIAGMMVGAAGILLTRLMAKAMNRPIRNVLFSNFGGGAGGEAQAITGAQKPIEASDVAAMMAYAERVVIVPGYGMAVAQAQHKIWELAQRLGQRGVKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFANTDVVLVIGANDVVNPVARTDPASPIYGMPVLDVVNARNVVVIKRGKGTGFAGIQNALFYADNTRMLYGDGAEAAASLVSELKALDGGH
>CP029773.1|AWT13441.1|787773_788094_+|NAD(P)(+)-transhydrogenase
MSDGFVALYIFMLAAIAGHVIISRVPVILHTPLMSGSNFIHGIVLIGAMVVLGHAQTPLEKALGFLAVVLGAGNAAGGYVVTARMLEMFKPSGPKGGKDEPKEPQA
>CP029773.1|AWT13440.1|787091_787676_-|RNA-polymerase-sigma-factor
MVSPSEEPYPVLVSSPVPPSAETDALPASLEAFLASVGPRAFRFAEAGLRQREDAMDAVQDALLRMLDYADKPAAEWAPLFWSILRRRVIDLQRRRRFRLPFWRDNQDAEGGEIDWADPGPDPAQAHEQRQQYQQLVDALRRLPARQREAFTLRVLQDLDGATTARAMGCSEGAVKTHLARARQALQDYLENHP
>CP029773.1|AWT13439.1|786768_787095_-|hypothetical-protein
MNRSLPSDDTLRSLHAQSLQALSPATLARLRQARHGATAVHRGRWRWWLASACSLVVALGVGLQFSGHGTLTGPAPAPVLASVEDNSALYDENPDLYLWLGDTDLAME
>CP029773.1|AWT13438.1|786303_786765_-|hypothetical-protein
MSRLHTLPLLLTLALLPAVPALAQSTAPGPAARAAPSAPLPAWEHLSEAQRESLLAPLRDRWNSADAGQRQRMLSHGQRWQSMSPEERDKARRGLRRFEHMNPEQREQARALFGQMRDMPPEQRDALRERWSQMTPEQRRDWVRDNPPPVKPR
>CP029773.1|AWT13437.1|785104_786184_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha
MAVALLGIKETAPGERRVALTPETARKLGALGITVWYEAGAGLAAGFTDAAYDDAGARVFDEGRWAEIDILLCVQAPPVAVLEQLKPAASVIGLLTPASDPALAALAAGDRLHLFPLQQLPRTTRAQAMDVLSSQAGMAGYKAALIAAERAPRFFPMLTTAAGTVRPAKVLVIGAGVAGLQAIATARRLGAQVEGFDVRPETREQIQSLGARFLDLGVSAAGEGGYARALTDEERAEQQRRLADHLRSVDVVICTAAVPGRPAPTIVTAAMVDGMATGSVIVDLAAESGGNCALTQPGQCIEHQGVTIDGPLGLASRGATQASEMYARNLLNFVALFVREGQLGFDWEDELLAKTRWQA
>CP029773.1|AWT13436.1|782730_785052_+|DUF1631-domain-containing-protein
MMSVPTPMGSPGRDPAQLQRARDMVLPALCQAFGAALARFDDALFDRAGNAGSSQLLFLDAMRELRRRREDIAAAFAGHLQRAWEALASGEPLSAEATLSGPAEDGLSLLAEHVLESRLAVRNFATVLLRDFKPVLARLDRRLGRLIGGAELDADRNPISPEHLGVAIHEAFAGCELAPEVHLVLIKLCERDLRVPVGRIYEKLDEQLAAAGVMSQMGTPQRPLSAAPDPRMASGLDDLVEQRQSAGFDSEFGDEEQAAPAWAQRFAARWSERRGHMQQHLPGEDGGSSEAYAGQQGMLLEALHELLQQTRHVREDATSAAQVAVGQHRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSSATRLGVDPGQTRLDPQDEDAIDLVGMLFDVMLDERELEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERMLMAKVEEIIERLVAEFNENLAIFLTLEEEFREFLVQHRRRVEIAERRAAETQRGQEKLEMARTRAGAELDRRIGDATLPPAIAEFLRQPWQHHLTLALLREGEEGASVTEALSLGDGLLEEVAEARRQIVGKPWLQAWQPVLSKVFASVGVHGDAATGAIDALHDTLQGIAESRPELQRALPELPQVALPAPPVAESPAVELSGQIDADDFDNADADRFRRMEIGNWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHVDDGAFDSAMQGVIDRLDPGSATLH
>CP029773.1|AWT16910.1|781817_782399_-|nitroreductase
MPDPAALLALDARRSVPSRQLGEPGPDPATLQRMLASAVRVPDHGKRVPFRFLKIAGDARHTLGDFLAERSRQRDPQAGEAVFEKDRQRFSHAPLVIVVVASPRPDPKVPEQEQLMTAGCVCFALLQAAQALGFGAQWLTAWMAFDPVVQAHLGLAEGERIAGFIHIGTPKAAVPERERPDPVALLRDWTPPA
>CP029773.1|AWT13435.1|780885_781821_-|exodeoxyribonuclease-IX
MTLPAPPSSLYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPQHIAIAFDEALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGSALHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLALCGDAVDNIPGVSGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREHAQLWRQLTTIALDAPLEGSQPGLLRQAADPELLGGLCQTLRFGPMTRRRLFDAAGVADPLPTHSEPA
>CP029773.1|AWT13434.1|780334_780889_-|DNA-mismatch-repair-protein-MutT
MSQRNTEAPRVVYEGKYQRMLVRGTWEYSERTHAGGLAAIIIAVTPEDNVLFVEQFRVPLQAPTIEMPAGLVGDIDAGESIEVSAVRELEEETGWTADHAEVLMIGPTSSGASSEKIAFVRATGLRRIGEGGGDDSEDITVHEIPRAQAAAWLVQKMGEGYELDAKLWAGLWMIEHHLDGRPRG
>CP029773.1|AWT13443.1|789790_790210_-|hypothetical-protein
MSSNAARARTVTWLWPIMLLLGLLVAPLAWMMLALMTGRQVGWMAVLTALELVFMLRMGTLGPGRLRIALVVLGTVLVAAVANWTIASAWMGGSIGLDLWDATMRMGPHLAWTLISLANGAMEWLWLALGLAVGAWLAR
>CP029773.1|AWT13444.1|790332_790884_+|putative-Fe-S-cluster-assembly-protein-SufT
MYSRSSEPVHFERDCEAVMVPQGDTVTLPAGSYGYITQALGGSYSVFVEGNLFRIAGKDGDAIGKEAPAPLELPADATDEQVEQLVWQQLRTCFDPEIPVNIVELGLVYEVEIKHLDEGKREIDVKMTLTAPGCGMGEILVDDVRSKLEMIPTVAEADVDLVFDPPWNQHMMSEAARLETGML
>CP029773.1|AWT13445.1|790943_792038_+|branched-chain-amino-acid-aminotransferase
MSQSIPSFAVTRSDHPRSAEERAQILEKPGFGLHFTDHMVEVRWDKDTGWHNANVRAYGPLQLDPAAAVLHYGQEIFEGIKAYRHADGSIWTFRPDANGRRLQRSAQRLALPELPVEIFVESLKQLIAVDSAWVPSADESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKGVAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPVEGKYLEELGGMNVFLVYKDGTLVTPQLSGSILEGITRESILQLARDRGMKVEERKVSIDEWKQGVASGEITEVFACGTAAVVTPIGQLKGEGFSVGDINAPAGEVTMSLRKELTDIQYGRLPDRHNWLVKLG
>CP029773.1|AWT13446.1|792495_794238_+|peptidase-S8
MSQVTQPRVRRVWVVLGASVLSSLLLATPALAGDVQLSGLQSAPTHQRFIVKYRDGSAPVANTTALASSLKSAAAGLAGSQGRALGLQQVRKLAVGPTLVKTDRPLDQAESELLMRKLAADPNVEYVEVDQIMRATLTPNDTRFSEQWGFGTSNAGINIRPAWDKSTGTGVVVAVIDTGITNHPDLNANILPGYDFISDAAMARDGGGRDNNPNDEGDWYGDNECQPGYPGSNSSWHGTHVAGTVAAVTNNANGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANANPAEVINLSLGGGGSCSTTYQNAINGAVGRGTTVVVAAGNSNTNVSSSVPANCPNVIAVAATTSAGARASFSNYGAGIDISAPGQGILSTLNTGTTTPGSASYASYNGTSMAAPHVAGVVALMQAVAPSPLSPAQVESIIKSTARPLPGACSGGCGAGIIDANAAVAAAINGGGNPNPGGNVLQNNVPVTGLGAATGAELNYTVAVPAGSTQLRVAISGGSGDADLYVRQGSAPTDTAYTCRPYLSGNSETCTINSPAAGTWYVRVKAYSTFSGLTLNAQY
>CP029773.1|AWT16911.1|794358_794844_-|asparaginase
MEELLVVTTGGTIDKIYFDDKSDYQIGDPQIGMILRELGVTFRFNVIPILRKDSLHINDEDRELIRATIAAQPTRHVLVTHGTDSMVQTGKVLATIPDKTIVMTGALSPARFRGSDAEFNIGCAIGAVQSLPSGVYIAMNGRIFDPQHVRKNVAANRFESV
>CP029773.1|AWT13447.1|794923_795259_-|DUF2069-domain-containing-protein
MSAAPRTVLLLALMGLAALFAGWFINDKHWLATQLVFTAPPLALAVALRLGWGKAGFWASVLALGWFSHGVMSAWSHPETRWLALIEIALALLVIFSASLPGLRARFGKRR
>CP029773.1|AWT13448.1|795255_795849_-|NAD(P)H-quinone-oxidoreductase
MGEILVLYYSRGGSVARLARQIARGIGEVPGMSARLRTVPPVAAVTQTAHPPVPDDGAPYVSVQDLVECQGLLLGSPTRFGNMAAPVKHFLDGLGAEWVNGTLSGKPAGVFTSTASMHGGQESTLLSMQVPLLHHGCVIVGIPFTEPALSHTTSGGTPYGASHVAGAADDPQPTDDEAVLARALGRRVADIAQRLAR
>CP029773.1|AWT13449.1|795926_797201_+|hypothetical-protein
MEPLDTLNLWMERARDRARAISFGRFLWHRFLDDRLFQAAAALAYTTVFALVPLAIVVFGVLSAFPVFDRWSDQLSDYVFSNFVPNAARAAEGYLRQFSASAGQLTAAGFIALVVSLLITLNSVEETFNQIWRVGSTRPKLTRFLVYWTVLTLGAMLAAASLAVSARVFAMPLFGTQEGRWLAELALRVTPILIEFVCITLMFRVVPHHTVKWRHAVPGAILAAVILELVKWGIGAYLGSFQSYQKLYGTVAFVPILLLWIYLCWVAVLLGASLSSSMAAFRYQPVELRLPQGYEFYGLLRLLGRFHHARAKGRGLADDEILRLEPMLTDSLLHDLTCNLQEIGLLRRDERGEWLLSRDLDQVSLADLYECTQLRIPVAEQHLPYRDDSLGRAALAALDDLRLPLRERLKRKVSDIYTDSGDMP
>CP029773.1|AWT13450.1|797197_797770_+|thioredoxin
MTRKTPLLLLPLALLLALSACKPAQEPTPASSQPPVQAPTPTAPAPVEETPAERTTAEFPTLKMKAVDGSDYDLAAHRGKWVIVNFWATWCAPCRKEMPELSALHAMRSNIEVVGLAYEDIEVPEMQSFLTKHPVTYPIVIVDPFDPPADFATPRGLPLTHLLNPQGKLAHTFLGPVTAADIEKQIASAK
>CP029773.1|AWT16912.1|798409_799192_-|polyphosphate-kinase-2
MAKLKRKDYDELLLPLQLELTAMARWVQHSGQRLLVLFEGRDTAGKGGAIQAISQHLNPRQCRVVALPKPTDREATQWYFQRYASHLPAAGEIVLMDRSWYNRAGVERVMGYCSETEYQQFLRQAPVFEQLLVDDGILLFKYWLCVDQEQQEKRFAERHLDPLKGWKLSPVDLKSRSKYSAYTEAREAMLRATHREAAPWTLVDFNDQRLGRLTLVRNLLDRLPDTRVDAPLPELPKLKGKLHREHYDVLKPIEDFPVEE

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Crispr_ID: CP029773_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_4

1311310-1311400

Orphan

Consensus_repeat	Method
TGCCGGCCAGCGGCCGGCACTACCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_4

>merge|CP029773|4|1311310-1311400|CRISPRCasFinder
TGCCGGCCAGCGGCCGGCACTACCGACTCTGCCTGGGTCTGGTAGTTGCCAACCTTGGTTGGCATTGCCGGCCAGCGGCCGGCACTACCGA

>CP029773|4|3|1311310-1311400|CRISPRCasFinder
TGCCGGCCAGCGGCCGGCACTACCGA	CTCTGCCTGGGTCTGGTAGTTGCCAACCTTGGTTGGCAT
TGCCGGCCAGCGGCCGGCACTACCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT13902.1\|1310860_1311220_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319937
CP029773.1\|AWT13900.1\|1309786_1310575_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|238519
CP029773.1\|AWT13906.1\|1314882_1315599_-\|phosphatase	unknown	unknown	gnl\|CDD\|319826
CP029773.1\|AWT13908.1\|1316985_1317384_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|307170
CP029773.1\|AWT13911.1\|1318657_1320037_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP029773.1\|AWT13897.1\|1306696_1308097_-\|transporter	unknown	unknown	gnl\|CDD\|224455
CP029773.1\|AWT13893.1\|1302905_1303274_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183072
CP029773.1\|AWT13903.1\|1311437_1312322_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366128
CP029773.1\|AWT13909.1\|1317380_1317740_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185011
CP029773.1\|AWT13901.1\|1310579_1310792_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314732
CP029773.1\|AWT13904.1\|1312325_1313390_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
CP029773.1\|AWT13896.1\|1305690_1306704_-\|hemolysin-secretion-protein-D	unknown	unknown	gnl\|CDD\|224482
CP029773.1\|AWT13910.1\|1317741_1318578_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|224561
CP029773.1\|AWT13905.1\|1313419_1314820_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223238
CP029773.1\|AWT13907.1\|1315766_1316975_-\|nucleotide-sugar-aminotransferase	unknown	unknown	gnl\|CDD\|99740
CP029773.1\|AWT13912.1\|1320033_1320717_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP029773.1\|AWT13898.1\|1308175_1309069_-\|LysR-family-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
CP029773.1\|AWT13894.1\|1303394_1304522_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
CP029773.1\|AWT13895.1\|1304518_1305706_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
CP029773.1\|AWT13899.1\|1309175_1309790_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT13902.1\|1310860_1311220_-\|glyoxalase	gnl\|CDD\|319937	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the larger superfamily, this family contains members with or without domain swapping.	9.35109e-36
CP029773.1\|AWT13900.1\|1309786_1310575_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	8.39182e-130
CP029773.1\|AWT13906.1\|1314882_1315599_-\|phosphatase	gnl\|CDD\|319826	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily. Bacillus subtilis recycles two toxic byproducts of polyamine metabolism, methylthioadenosine and methylthioribose, into methionine by a salvage pathway. The sixth reaction in this pathway is catalyzed by B. subtilis MtnX: the dephosphorylation of 2- hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HKMTP- 1-P) into 1,2-dihydroxy-3-keto-5-methylthiopentene. The hydrolysis of HK-MTP-1-P is a two-step mechanism involving the formation of a transiently phosphorylated aspartyl intermediate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.30359e-36
CP029773.1\|AWT13908.1\|1316985_1317384_-\|EamA-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	2.80623e-06
CP029773.1\|AWT13911.1\|1318657_1320037_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.1751e-51
CP029773.1\|AWT13897.1\|1306696_1308097_-\|transporter	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	9.70149e-38
CP029773.1\|AWT13893.1\|1302905_1303274_+\|hypothetical-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	8.14804e-28
CP029773.1\|AWT13903.1\|1311437_1312322_-\|hypothetical-protein	gnl\|CDD\|366128	pfam00491, Arginase, Arginase family.	0.00620529
CP029773.1\|AWT13909.1\|1317380_1317740_-\|hypothetical-protein	gnl\|CDD\|185011	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional.	0.00873844
CP029773.1\|AWT13901.1\|1310579_1310792_-\|hypothetical-protein	gnl\|CDD\|314732	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system. ParD-like antitoxin is a family of archaeal and bacterial proteins of a type II bacterial toxin-antitoxin system. Many of the cognate toxins for these molecules fall into family ParE-like_toxin, pfam15781. Gene-pairs are expressed from the same operon, the toxin of the pair being expressed first, eg, for UniProtKB:Q3AQ93 and UniProtKB:Q3AQ94.	8.93335e-28
CP029773.1\|AWT13904.1\|1312325_1313390_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	5.97173e-08
CP029773.1\|AWT13896.1\|1305690_1306704_-\|hemolysin-secretion-protein-D	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	4.82805e-36
CP029773.1\|AWT13910.1\|1317741_1318578_-\|alpha/beta-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.51051e-46
CP029773.1\|AWT13905.1\|1313419_1314820_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|223238	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism].	2.65086e-109
CP029773.1\|AWT13907.1\|1315766_1316975_-\|nucleotide-sugar-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.04947e-44
CP029773.1\|AWT13912.1\|1320033_1320717_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.6692e-68
CP029773.1\|AWT13898.1\|1308175_1309069_-\|LysR-family-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	6.03369e-149
CP029773.1\|AWT13894.1\|1303394_1304522_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	3.209e-31
CP029773.1\|AWT13895.1\|1304518_1305706_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	5.63506e-34
CP029773.1\|AWT13899.1\|1309175_1309790_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	4.57984e-63

>CP029773.1|AWT13902.1|1310860_1311220_-|glyoxalase
MPQTVIPQLRMRHADTTLPFYVQGLGFVVDWEHRFEPGFPLFAQLTRDGQTIFLTEHSGDCEVGGAVYFIVEDVDALHRAFSAAGVPIEQPPHDTEWGSREMLLRDPDDNRLRFATDAS
>CP029773.1|AWT13901.1|1310579_1310792_-|hypothetical-protein
MGIVNIDDTLHDQLRRACTVSSRSINAQANFWIRVGMLCEMNPTLSFQDIVASELRAAGVQPPLLAPGQV
>CP029773.1|AWT13900.1|1309786_1310575_-|type-I-methionyl-aminopeptidase
MAIIKRPDEIALMAESGRLLAQVFAALDRLPLQGRSTMEINDFVERMIVDELQARPASKGQYGFPYVLNTSIDNVICHGVPSTTDVLRDGQIVNLDITLEKNGYIADSSTTYLVGEVDYAARRLVQTAYQAMWKGIAAVRPGARLGDIGHAIARHARSHGYSVVKEYCGHGIGQEMHEEPQILHYGHPNTGMVLEEGMVFTIEPMLNQGKPAIRQQPDEWPVYTRDGKLSAQFEHTVAVTHSGVRVLTLRPGETPLCAVDAA
>CP029773.1|AWT13899.1|1309175_1309790_+|amino-acid-transporter
MWIAATAAGLFAGAGLIIAIGAQNAFVLRQGLQQRHVGRVVLACAGADIVLILAGVGGMGALVLQWPLLLQVLRFGGAAFLLWYGLQAGLRAWRGGSALAAAEAQGGSGRQVLLTCLAFTLLNPHVYLDTVVLLGSLSTRYPGELRWAFAAGACAASVAWFCTLGYGARLLQPVFRRPGAWRVLDAGVAIFMFCLATLLLLRPL
>CP029773.1|AWT13898.1|1308175_1309069_-|LysR-family-transcriptional-regulator-ArgP
MDLVHPQLAAFAAVLEEGSFEAAARRLSISPSALSQRIKALEDRLGQVLVVRQAPCRPTAAGEALLRRVRPMQALEAEALAELLPERGSDAARTPIPLAVNDDSLDTWFVPAIADLHQRHGYLFDLRMDDQDHTLQLLRDGSVLGAVTAESQPVKGCNVHPLGAMRYHAIASPGFARQYFSDGMQAAALARAPMLVFNRKDELQWRFVRRLTRARLQPPLHYLPSSTGFVEAAACGLGWGMAPETLVAPAVRAGRVVVLEPRRWLDVPLYWQHAAVRSSTLQHITQALRTAASGTLR
>CP029773.1|AWT13897.1|1306696_1308097_-|transporter
MGVIGRRTRMHGAKAALALAACLPLAAAAQSLTDAPALDWEQARQRLEQVSDALAAADAAVRNKQDLQDATRLLRLPEITGEVRRLQFQKTLTLPLGSLAPVAEAYGIDSPLSFTERDWRTRPVVTAVLPLYTGGVIPAAQRAASAAHEQASAEREAQRQSLTVQLAQAYFGQRLAEQAVDVRRDVRDGLNRHLSDAEKLEREGFATRAQRLQATVARDKAEREYQKTVNDLATLKAALATLLRSGGEVQPVSPLFVQRVPLEPVASFERTAQARQPQIARLRAMVAQAEQGVRVQQAKLKPQIFAFGQYDFRRRDEMLTDPDWAFGIGLKYTFLSPNSRPAQISAARAQQDQAEAGLREAENQVALGVRKAWNELETARQQYVLLDSSIAQAQENLRLQELAFREGQATSLDVIDARLGLGGARVERAQAAYQYDIALAQLLEVSGQMDRFEEFRRRADEVIDHE
>CP029773.1|AWT13896.1|1305690_1306704_-|hemolysin-secretion-protein-D
MSDVLHDDATTPPGKRRLGPILIVVLLVVVVLGLWLAWRSPGDQIQGMADADTINVAAKITARVAELKVREGDRVQPGQVLFLLDSPEVAAKEQQAHGALAAAQAVADKADEGARSEDIRAAEANWKRAEAGATLAEATYQRVQNLFNEGVMTRQKRDEAHAQATSSRELARAARAQYDMALAGAREQDKRAAQGQVQQAEGAVAEVNAARVEVEGRAPVAGEINKRMADPGELVPAGYPVFTLVDIDRMWVAMNLRESQMQGLKVGSKLRGSVPALGQEGEFEVYFINPAGDYATWRTTRQSSGYDVRSFEVRVRPVRRIEGFRPGMSVLFAWPQH
>CP029773.1|AWT13895.1|1304518_1305706_-|ABC-transporter-permease
MAPALSPDSSGFAVSWRRELRSLRGNRADLLLVTLLPLLMLAVMAWMFTPSVMRDIPIAVVDLDHSSDSRLLLRMLDASPGVRIASQPVDLEDARSQLRRLDVFAIVLVPRDVTRQALRGRQGTVFAYYNATYMTTGQSAARDIGDAVLAWNARLLRERIGLQVGPAKLRAAPIAVQSDILYNPARSYELFLLPLIFPAVLSLVLALAVAGSLGREIRDGTLPAWLGRTPWAAIAGKVAPYILLFSLYGALGIGYLAWLRGDGVAGSVLLLLLAQPLFYLATAAYALFFVGVTRDMGTALSAVGLSIGTALAFSSATFPVLDGPLFTRIWHQLLPLSAYIKLQTQQQFIGSPLQVSAWPLATLLLMSVVAGGIGGLRLIAFARTPAAAHPAGADA
>CP029773.1|AWT13894.1|1303394_1304522_-|ABC-transporter-permease
MSALWRSLRQTLMAVLCDRYAIVVMVGAVILYSFFYPAAYRHQVAGNLPVLVVDEDHSATSRELLRKLDALRVARVVGQPADIDSARQQLEAGHAEGIVLIPANLERDILRGHPAKLVLLGNGAYLGRASWVLGSVADALGAFGRDAVVGQAAFMGAPQAPPVTLVQRPLYNTQEGYGSAIVPGVAELIVHQTLLMGIGVLLGGRRLALGRRLRFDLPTLAGMALGFGLIGLFGLCYYAGFTAWVQDYPRGGNPLGQLLGGTLFIAATVAFGLFVGSFFRTRERAFQYIIATSIPLFFLANLSWPAAMTPQPLVWLAQLLPTTSGINLMVRLNQMDASLAEVSHELITLTVLLVLYGSLASWRLLAKKGTEGIKS
>CP029773.1|AWT13893.1|1302905_1303274_+|hypothetical-protein
MAMKTSTRLLVLGTLLAATSVAGAQTYGPRDEGRRFNDGSRVVCKNVEVQRNSRDPNRIAGTATGAVIGGLLGNQVGGGNGKKLATVAGAVAGGAAGRQIQGNSQQKNGDRVVERRCERVYR
>CP029773.1|AWT13903.1|1311437_1312322_-|hypothetical-protein
MPLRSPLILDLDGGVLPLPQAQTLALPQWHDPLRFACSNATLDRFAAEVLAPLPAQLGTVMLGSGDFHHLSLPLLRRMRAQAPFQLVVLDNHPDNMRFPFGMHCGSWVNAASKLPQISHIHVLGITSSDIGLGHAWENHWRPLMGGRLTYWCMDVDVGWGHRLGMGHAFRRFEHPEALVAAFAAEQAKSPQPTYLSIDKDVFAEDVARSNWDQGRFQLEHALVVIEALRAGGLVGSDITGEVSLANYQSRFKRWLSSLDGQPDVSAEDLPVWQARHQQVNRELLAAMASVPTAC
>CP029773.1|AWT13904.1|1312325_1313390_-|GNAT-family-N-acetyltransferase
MEMTSRASSTTLEPAALLEGFLAHPPLGFEASRLPSGLPTFRAPLDLTTTMDDDLRGKLLGLPLSRLWRPWITWKTRFVGATSTEYTPLPAHVAPEALAEDVTRHAIGDTRLLVVKDLAIDSPLLDDAANAHSGAFLQALLARGFVELEGMPLAWVAIDFDSIDGYLGRLSSSRRKNIRRKLRSRDELQIDCIATGDPALADPQLQAELYALYLGVYAQSAVHFDQLDLPYFQHLLADSLGQGRMFLYRHQGQLIGWNLCYIHAGKLVDKYIGLAYPQSREHNLYAVSWMHNLEYALQHGLSHYVAGWTDSRIKAELGARFTSTRHAIHARSPLLRAALRRLAPYLQGEADGGG
>CP029773.1|AWT13905.1|1313419_1314820_-|aspartate-aminotransferase-family-protein
MNIFDKNADAAASEAQLLADEARYSSFGDTVHYVDPPKIFQRGEGSYMFDGAGVPYLDLQMWYSACNFGYSNKRLNDALKDQIDTLPQVASQYLHPTRVQLAKTIAVDMHEKFGLDGRVHFNVGGAQAIEDSLKIVRNARGGKSLMFAFEGGYHGRTLGASSITSSYRYRRRYGHFGERAMFIPFPYPFRRPKGMTPDEYSDHCVWQFERLFESEYNGVWDPKVGQAEYAAFYVEPIQGTGGYVIPPRNFFTGLKRVLDKYGILMVVDEIQMGFWRTGKLWSIEHFGVTPDVLVFGKALTNGLNPLSGLWAREELINPTVFPPGSTHSTFNSNPLGTRLGLEVLKLGKEMDYERTVPEKGAYFLDGLRGLQKRHPEIGDVDGLGLALRAEICQTDGYTPNKELLDRMVDIGLAGDLLHDGKRMGLVLDVGGWYKNVITFAPSLDISHEEIDLAITLLDQALTKAKG
>CP029773.1|AWT13906.1|1314882_1315599_-|phosphatase
MRWSILCDFDGTISLEDVIDSLLEKYGQPGWQELEDQWKAGKIGSRECMQGQVRLLKLDPATLDAHLDQVQIDPGFAAFVSRAEQLGVPLRIVSDGLDHAIHRILANHGLPPLPVVANHLRWCGDHWELESPYQAEGCRSGTCKCTCAAQARANEAPRVLMIGDGSSDFCVSEDADFVFAKRRLITHCTHAGIEHAAIDTFHDAIALLPRLLDGSLLQPRRIDASPQPAVLPLLLATA
>CP029773.1|AWT13907.1|1315766_1316975_-|nucleotide-sugar-aminotransferase
MSLFARELPPTAGLPMQASDFLPGGGDLRDILASQLGTPPLQLTCSGTHALLIALRTLRKRAPQRDTVIMPAYTCPLVPIAVHSLGLRVQLCDTRHGHFDFDPGQLKQLADARTLAILPTHLGGRTADVELACEIAHRAGAWVIEDAAQALGARVGNSSVGLRGDIGFFSLAAGKGLSLHEGGLLVSRDDELRAALAGHAAEQVRFSLRWELLRSVQLLGLAACYRPSLLSLVYGNPLRSALQRGDLEEAVGDIFPLDIPQHRVSQWRQNIGAHAARRLPAFLQAGRLRALQLRVQLAQLPAVEVVDGLAGTGGTWPMLMLLLPSERARDAALENLWPRGLGASRMFIRALPDYAYLRGIVPQADVPNARDFAARMLTLGNSAWQTPEETAQILQALADAQP
>CP029773.1|AWT13908.1|1316985_1317384_-|EamA-family-transporter
MRRLYVIGFPLLMAFDTLAQLCFKYAGDAALPVEANTAWLLRVLSQPWVYGAILGYVGAFFTWMSLLRHAPIGPAFAASHLEVISVLLLSAWLLNEPLTLHHLIGAVLIVAGIVCLGRAEADDPHSPVESAS
>CP029773.1|AWT13909.1|1317380_1317740_-|hypothetical-protein
MGALATLLWLANVVLDTGGQLAFKAAASDPQEGEGLQRWKHMLSRPWLWIGIACYVLEFVAWIAFLSLVPLSKGVLLGSINIVALMIAGRFLFREKLTPLRVTGMLLVTAGVAVVGAGS
>CP029773.1|AWT13910.1|1317741_1318578_-|alpha/beta-hydrolase
MTESHDFFLPGGPQGVLLVHGLTGTPAEMRMLGKGLNNAGFTVHGVQLPGHCGTVDDLLATTWEQWYQGVEDAAAALRGKVDQLFVGGLSMGAVLSLALAARRPEWVSGVGVYGATFRYDGWNIPAVARFSFLLPWFKRFNIGRDRMFMEEPPYGLRDERLRAQVSAAMLSGDSAAAGLPGNPWHALAEMRALSNWTRRHLHQVTAPCLVMHAREDDVASMGNAELVMSRVSGPKELVVLEDSYHMITIDRERRDVIRRSARFFTEIGERSGVLKAVA
>CP029773.1|AWT13911.1|1318657_1320037_-|sensor-histidine-kinase
MISGPPSLRRRLLAFLALPMLGLLTFNTILAYYVALDYSNRIHDRNLIDDTHSFAQMLSTMPVTSDLSPQARFLIEYDPDGHRYFNVDSSRMGTLSGNADFSPYAPSQDCTGVHPALYDGNLNGQQVRMATVCTQAMNDPQDQLAVTVAESMADRRQRAREILMIIIPLMTMLALGTAALVWFGVTYGLRILTPLRTRLAQRRGELAPISDADVPEEIQPLISTIDDLFARQAEMITLQNRFIADAAHQLRSPLAGMALHVDQALAHGDPDTVREALQHIRRLNQRTARVSTQLLALSRAQTVPDTVEALDLCELVPQWVGMRVPEAIRDGIDLGYRGSPHPLRVLGNGAMLQEALDNLIDNALRYAGRNATVTVGVHALDDNDVELYVEDNGPGVPDDVMPRLGERFFRAPGTAASGTGLGLAIAHEAVEHFGGRLSFLNRPGGGLKVAITLPLLKAP
>CP029773.1|AWT13912.1|1320033_1320717_-|DNA-binding-response-regulator
MRVLIAEDDPDIASGLCASLRRQGHVVDHVDNGAHADAALGSTQYALLVLDLGLPQLDGRDVLQRLRQRGDGLAVLVVTARDGLAERVRVLDLGADDYLVKPFALDEFEARVRAQLRRVTSNGNPDLRIGRLRIDLAGHRVWIDDQSLELTAREFGLLSALAVRAERIVSRAQLVEALCDWGQDLTDNGLDIALHRLRRKLQPGGMGIRTVRGLGYMLEDAQDDSAP

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Crispr_ID: CP029773_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_5

2263905-2264009

Orphan

Consensus_repeat	Method
TGGTGGGTGTCAACCTTGGTTGACACGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_5

>merge|CP029773|5|2263905-2264009|CRISPRCasFinder
TGGTGGGTGTCAACCTTGGTTGACACGCTTCTGATCTGCCGGCCAGCGGCCGGCACTACCGATCACGGCCTGCCGCTGGTGGGTGTCAACCTTGGTTGGCACGCT

>CP029773|5|4|2263905-2264009|CRISPRCasFinder
TGGTGGGTGTCAACCTTGGTTGACACGCT	TCTGATCTGCCGGCCAGCGGCCGGCACTACCGATCACGGCCTGCCGC
TGGTGGGTGTCAACCTTGGTTGGCACGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT14723.1\|2268279_2269308_+\|esterase	unknown	unknown	gnl\|CDD\|225375
CP029773.1\|AWT14722.1\|2267230_2268214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372616
CP029773.1\|AWT16978.1\|2254154_2254895_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP029773.1\|AWT14713.1\|2253849_2254068_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP029773.1\|AWT14721.1\|2266715_2267105_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540
CP029773.1\|AWT14717.1\|2261191_2263135_+\|transglutaminase	unknown	unknown	gnl\|CDD\|379003
CP029773.1\|AWT14726.1\|2271901_2272945_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP029773.1\|AWT14719.1\|2264028_2265390_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP029773.1\|AWT14725.1\|2270858_2271905_+\|hemin-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226928
CP029773.1\|AWT14715.1\|2257586_2258558_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP029773.1\|AWT14718.1\|2263246_2263885_+\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|178807
CP029773.1\|AWT14714.1\|2256360_2257485_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|377314
CP029773.1\|AWT14720.1\|2265690_2266605_+\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|226077
CP029773.1\|AWT14710.1\|2250532_2252818_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP029773.1\|AWT14716.1\|2258791_2261152_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP029773.1\|AWT14728.1\|2273828_2274434_+\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT14711.1\|2252893_2253277_-\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT14724.1\|2269430_2270807_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|274824
CP029773.1\|AWT14712.1\|2253405_2253678_-\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT14727.1\|2272941_2273703_+\|heme-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|237422

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT14723.1\|2268279_2269308_+\|esterase	gnl\|CDD\|225375	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	7.13062e-56
CP029773.1\|AWT14722.1\|2267230_2268214_-\|hypothetical-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.85382e-08
CP029773.1\|AWT16978.1\|2254154_2254895_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.65109e-130
CP029773.1\|AWT14713.1\|2253849_2254068_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	7.64978e-48
CP029773.1\|AWT14721.1\|2266715_2267105_+\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	6.24623e-27
CP029773.1\|AWT14717.1\|2261191_2263135_+\|transglutaminase	gnl\|CDD\|379003	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857). This family is based on the first domain of the PDB structure Structure 3KD4(residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase (3ebi, Z=10, rmsd 3.6A for 152 CA, seq id 12%), despite lack of any significant sequence similarity.	1.40177e-27
CP029773.1\|AWT14726.1\|2271901_2272945_+\|ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	8.225e-87
CP029773.1\|AWT14719.1\|2264028_2265390_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP029773.1\|AWT14715.1\|2257586_2258558_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	8.56317e-153
CP029773.1\|AWT14718.1\|2263246_2263885_+\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|178807	PRK00031, lolA, outer membrane lipoprotein chaperone LolA.	1.55808e-72
CP029773.1\|AWT14714.1\|2256360_2257485_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|377314	pfam04339, FemAB_like, Peptidogalycan biosysnthesis/recognition. FemAB_like is a family of both baterial and Viridiplantae proteins with responsibility for building interpeptide bridges in peptidoglycan. Such a function is feasible for bacteria but less likely for the plant members of this family. Perhaps the plant-members are using homologous proteins to recognize bacterial peptidoglcans as part of their innate immune system.	0
CP029773.1\|AWT14720.1\|2265690_2266605_+\|IS110-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.14051e-21
CP029773.1\|AWT14710.1\|2250532_2252818_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP029773.1\|AWT14716.1\|2258791_2261152_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP029773.1\|AWT14724.1\|2269430_2270807_+\|ATP-binding-protein	gnl\|CDD\|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	8.2174e-11
CP029773.1\|AWT14725.1\|2270858_2271905_+\|hemin-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226928	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism].	1.14387e-33
CP029773.1\|AWT14727.1\|2272941_2273703_+\|heme-ABC-transporter-ATP-binding-protein	gnl\|CDD\|237422	PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.	1.43247e-110

>CP029773.1|AWT14718.1|2263246_2263885_+|outer-membrane-lipoprotein-carrier-protein-LolA
MNFRFRRFLATTTLAVACAAAGSAWAGARDDLKTFTGGLKGLDGQFSQQVFDNRGKVKESTSGRVALSAPRLFRWEYVRPHEQLIVADGKKVWMYEPDLEQATVREQGKEEQNSPLTALINPALLEQQYDVSEEAAQRDGLQWLSLSPKRETEASFQYAALGFNAQGLAKMEITDAVGQRTVISFSGWKRNPGFAAGTFSFTPPKGTDVIGN
>CP029773.1|AWT14717.1|2261191_2263135_+|transglutaminase
MLHPVPSALALALAALMAAGPALADTATSAPATAPPSTSGDTEASNNFSIVRYRADYQVRPDAGNVQTETYEVLLKTKASVEQFSQVRLSYSEKMETLDVLGAYTITADGQRRDVPADRIYTQESYSSASAAMYADRKVRVIVFPNLAPGTRLYYQVRRTQATPYFPGYFGLWETFNVFTEYEDAEVTLSAPANLPMFVDSRGVQGSDRPTVKNGQAQWRWRYQRREAMPAQNWSAAGWEFGPNIMASTYRDWSQMGRAYQLKAGPAAQVTPELQALADEITVGISDRREQADALYRWVAQNIRYVAVYLGNGGLEPNSAQSILDNHYGDCKDHVTILEALLAAKGIASSPVLIGAGGGPTLPKIPVLGRFNHAITYIPEFDLYLDSTTAWARFGQLPEGDLGAPVMRTRDATLARTPANTPQRNATSMEVRFTFDANGNLRGETIPKLGENAEIGMRAQFSQLNAQNRARAEEQIMAASGFDGRGQLQIQGVPVDLTRPFGYRMAFQAEDYADFSVAGGMAVPDPPGGESVRGLYATASAPANETPFYCNASLREETYRLQFPANAPIIAIPASQRFANAAGEYRVDWSRDGQDVIVHHRLQQNAVRGPEALCQPQDYPAFRALYREVRRGFRGQVLYGKLPGSGG
>CP029773.1|AWT14716.1|2258791_2261152_+|DNA-translocase-FtsK
MAKQVPERSKSDDSKASRRTAAAATTDNPRRQRLWRDLGLIAIAPALLYLAASLFTYSATDPGWSHTGSVVAPVHNLGGRAGAWIADVLLQLFGYIAFLLPVVLGALAWIAMFGLKRESKGENDLDPALRLVGLVGFLIAGTGFLHVRLFSGDVSSAGGILGKLVGNSLTVGFGALGANLFVLVLLLASITLATGLSWFTVMEKIGRGVMSLAPLLARKKEEVTEWQQTRVMREERQEVRKADAEVRAKREPVKIEPRPEPVIEKSDRAKRDTQIPMFRGVNGDGSDLPPLALLDDPKPQPVGYDKETLDALSRQIEFKLKDFRIDAQVVGANPGPVITRFEIEPAPGIKVSQISSLDKDIARGLSVKSVRVVDVIPGKSVIGLEIPNVTREMIYLSELLRSKEYDKSASVLTLALGKDIAGRSTVADLARMPHLLVAGTTGSGKSVAVNAMVLSLLFKASPKDLRMLMIDPKMLELSVYQGIPHLLAPVVTDMKEAANGLRWCVAEMERRYKLMSAVGVRNLAGFNKKVKEAQDAGQPLMDPLFKPNPELGEAPRPLETLPFIVIFIDEFADMMMIVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQSGAETLLGHGDMLYLPPGTAMPERVHGAFVSDEEVHRVVEHLKAMGPADYVDGVLDEVQTMGDGVVVGATGLPENSSAGDESDPLYDEALRVVTETRRASISGVQRRLKIGYNRAARLIEAMEAAGVVSPPEHNGDRTVLAPPPPK
>CP029773.1|AWT14715.1|2257586_2258558_-|thioredoxin-disulfide-reductase
MSTSLPSRHQRLVILGSGPAGWTAAVYAARANLKPVVITGLQQGGQLMTTTEVDNWPGDAHGLMGPDLMARMQAHAERFETEVIFDHIHTADVSQRPFKLIGDSHEYTCDALIIATGATAKYLGIPTEDEFKGRGVSACATCDGFFYRDQDVVVVGGGNTAVEEALYLSNIARKVYLVHRRDTLKAEKIMQDKLFKKVAEGKIETVWHHQVEEVLGNDAGVTGVRVKSTLDGSTRDIDAHGFFVAIGHHPNTTLFDGQLAMNNGYLEIRSGLGGNATQTSVEGVFAAGDVADQHYRQAITSAGFGCMAALDAERYLDAQGKAS
>CP029773.1|AWT14714.1|2256360_2257485_-|GNAT-family-N-acetyltransferase
MPSPRFLDSLQSIAATDWDALHDGRNPFVSHAFLSGLEQHGCLREDWGWQPRHFTLWEGEHLVGAIPGYLKTNSHGEFVFDHAWANAYARHGRDYYPKWLGAVPYSPVTGPRLLARHDSERAALLSALRDALPALGVSSAHINFHTAGDEALFGDDWLLREDVQFQWQNPGDWATFEQFLGAMDHKHRKNIRQERAKVTRQGITFRVVHGDEASRADLQAMYRFYLQTFLEYGNAPALTETFLRHLAITLGRGLVLFLAEQDGEPIAGALCLRGGDTLYGRYWGGATLPGLHFEACYYQGIEYCLREGLSRFEPGAQGEHKLARGFLPTLVRSRHWVADTDFAEALQEWCRQERRDVRRYQQALQGHGPFRVEP
>CP029773.1|AWT16978.1|2254154_2254895_-|leucyl/phenylalanyl-tRNA--protein-transferase
MTRQLPWRLADAPDAPFPPAETALRQPDGLLAVGGDLHPVRLLNAYAGGIFPWFSEGEPILWWSPDPRMVFRTDGVHLSSRFRRQLRSSTWEVTADTAFSRVMRACAAAPRPGQDGTWISPAMVEAYSQLHDLGFAHSFEVWDRQTLVGGIYGVAIGAMFFGESMFSGASGGSKIALAALAATLRGWGWELIDAQVENPHLLRMGAEHLPRADFLEHVRQAVHRDGREGPWTQAVGRLPARRLAGG
>CP029773.1|AWT14713.1|2253849_2254068_-|translation-initiation-factor-IF-1
MSKDDSIEFEGTVSETLPNTTFRVRLENGHEIIAHISGRMRKNYIRILTGDRVKVEMTPYDLTKGRITYRMK
>CP029773.1|AWT14712.1|2253405_2253678_-|hypothetical-protein
MTYLIVLDPQSVTSRCYASKGPDGTWFGQPCLVCTSMDASHPLYLAVQREIPHLGGTLKQRLHIPHEAVAFVIEDGGDQGRQQGFRSIAA
>CP029773.1|AWT14711.1|2252893_2253277_-|hypothetical-protein
MNALLPHVLLPAVLLVSLPLSAPAAEPARPSTAAECIALGTSRDIRPSSTEREVLLRDGNNHYRVHLQKRCLGAAASASYVFFTPGTPEQICGDARSTLQTDSNHCTVTRIEPVDAATFKRLAQQGR
>CP029773.1|AWT14710.1|2250532_2252818_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADTERLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGEEGEQPSSSSEGESRMEGGEGEPKGDALTEFASNLNEQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIVEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEGQRKELIDVEEVEAIVAKMARIPTKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>CP029773.1|AWT14719.1|2264028_2265390_+|replication-associated-recombination-protein-A
MARHRSTSFPGPDLLSVDREHLRPLAERMRPRTLDEMVGQKRLLAPDSALRRAVESGRVHSMILWGPPGCGKTTLALLLAEYSDAEFRAISAVLSGLPEVRQVLAEAAQRFAEGRRTVLFVDEVHRFNKAQQDAFLPHIERGTILFVGATTENPSFELNSALLSRCRVHVLEGVSPTDIVEALERALGDRERGLGEEGIEVAPELLLEIATAADGDVRRALTLLEIAAELAGGEGGRITPQTLTQVLADRTRRFDKGGEQFYDQISALHKSVRSSNPDAALYWLTRMLDGGCDPSYLARRLTRMAIEDIGLADPRAQSMALEAWDIYERLGSPEGELAFAQLVLYLASTAKSNAGYAAFNQAKADVRESGTEEVPLHLRNAPTKLMKELGYGAEYQYDHDAEGGIALDQTGFPDAMGERVYYNPVPRGLEIKLKEKLDRLRAEREAARAAKGR
>CP029773.1|AWT14720.1|2265690_2266605_+|IS110-family-transposase
MFGIGIDVSGENLDVAVHEQAFRQFKNNKRGWASLIRWLQRWPAKQVVLEASGGYEQKALDALHEAGLPMVRINPGRGRSFASATGRQAKTDRIDAMVLAHMADALKLTRYVPPAAWQRRLGELCQRRRHLVQMRVSEHQRMRAFSEPCLISMLNQHLDEIQKSIKQLDATIAALLAEQDGWRDFAKLKGAGPVLMATLACELPELGKLSGKAISALVGVAPMNRESGTWKGRRNITCGRAVVREALYMAALTAKRYEPRLKEFFESLVNQGKPGKVALVAVMRKMLVILNARKREAEAQMASA
>CP029773.1|AWT14721.1|2266715_2267105_+|DUF805-domain-containing-protein
MQEMILPLKRYAQFEGRANRREYWMYQLFLFLVAAAVMLLAGVLAILLRNSPDALAGILIGMVVLLGVMWLATIVPLIAVTVRRLHDCNQSGWLFLLALVPGGGIVIMIFSLLPGTPQENVYGPVPAGP
>CP029773.1|AWT14722.1|2267230_2268214_-|hypothetical-protein
MIITSIKRHTVYHARMGTFGTKRGNRQAGFAPRPYGKLGGINKNRDCHSVYAICRSLARKGLDTIRPHVFPVSIPTTERPACNICGFRLRASREAIAERDTRSCIGCGSTLRFRALMAALQSELDQAREIRVLERTPRRGQIKGIGMTDAHIYTSALRRKFDYINTYFHKRPMLDIRHPAAHYLGKYDFVVSSDVLEHVDGPCERTLENLRALLKPGGLLVLTVPYGFHEVTIEHFPELNDYRIEGKGADRVLVNITSDGREQRFSDLSFHGGDGSTLELRIYSYPHLVRLLGEAGFVDVKLHDSQYPQWGIIHDSLLGLPITARAA
>CP029773.1|AWT14723.1|2268279_2269308_+|esterase
MKHFVLPSRRGRLARGLAALMMGLLLATPYAHAQQRNPLQKIGHTVLDEPAASYRFEHFVVDSPDQQRRWRVNLAIPAKAGKTPLPVLYALDGNAVAMVLDQPLLAELAARKAPPVLVLIGYDNDLRIDSKARTRDYTAWIDRADDESGTTQAVGGGAAAFLDVIERRIKPEVERRARIDTQQQALWGHSLGGLFVLNALYTRPAAFQSYLAASPSLWWSQGAALGDPEQQFVQNAHGQPAKLWLMLGGAERVGDRGKRDMNNPRVVAHLRRIGGATPDAAMQLSERLAKVPGMRVQYREFDGLGHGPMLPASFHAALHELYGVTDRSASDGAPNGGDNAAE
>CP029773.1|AWT14724.1|2269430_2270807_+|ATP-binding-protein
MSFRPSFRLTSLAAGLLLAVTATAQPVFDQPANATFKGEVVSRGENVVPGSTADVVGRGFVPGQKVSLLRGDSVLNTQPLVVDADGNFKTQLSIPADAVPGTHPVVVRASQPAAATVLKLRVSPQLPLSGQAQFATQSNKLVPGLYQSAYSAASNAVFVTSAVGRPPVTQSQLLKLDPKSLKVTKAITPAQVPGSTNGAVYAVYGVGVDDTNGNVWVTNTRQNSIAVYRQKDLSLVHQFPVDAVPHARDVVVDGTHGKVFASATGEDHLSVFDAKTLKELPAVTLESGVDDGKFTPMSLVLDEKGGKLFTVSIGTPEAAVIDVASGKVEKVIDLGNSISASGVAFDAARNRLYVASQGTDNLLIVDVAAGKVLHDVPVGAGALNVAFDDVSGLAYVSNRGAGTVTVVNGDGKVVANLDGGTLPNHVRADGKGNVFAVNKSRGAEDPKGDRITRITPKQ
>CP029773.1|AWT14725.1|2270858_2271905_+|hemin-ABC-transporter-substrate-binding-protein
MNIASRLRLCALPLAVSLALAACGGSSTPSDTGKPAGPAAATAADEVALPAGWQRVAGTDMPAVRDQKAVLPAKVHSDDGADVEVADTSRIIAGGDDVIAVIEALGLDKQVFAAPTNTTTRAGLAAPHQFLFNRTTGVEGVLSLKGSLFLGNSLRRHTELARKLREVGEPAVVIDDLQPAPDKVRKVAAALGLAEAGQALATQVQRQLDEAAAIGKGLGHAPRLIHVSATGAGGAPTVAGADSASAQLIALAGGVNIGTEAGVKNYSQLSNEGVVAAAPEVILVTEHDLQLFGGAEGLWKSYPTLKQTPAGQANRVWVMPDVQLKYTSVGSGAGALALAKALAALPKA
>CP029773.1|AWT14726.1|2271901_2272945_+|ABC-transporter-permease
MSPADRRRRRGRTMLLVALLALLGAVLASFAVGPLRLPPLEVVQALGVKLGLLDPQAVSSRDLAVVWQLRIPRALLGAMVGASLAMAGASLQGLFGNPLADPGIVGVSQGAALGAVAAIVLGAAGAAGWLVPVAAFAGGALAIGLTYALARPGKGTGNATLLLVGIAMAAFCSALIGFLTYIASESELQSLVFWQMGSLARANWADVAAVVPLFAIGVFALQRLATPLDMLALGERQAQHLGLDVTRTRRRLVAFSALLVGAAVAFAGSISFVGLVVPHVARLLVGPGHRWLLPLSGLLGALLIVVADTAARTLDPPAEIPLGLFSAALGAPFFLWLVLQQRRKAAP
>CP029773.1|AWT14727.1|2272941_2273703_+|heme-ABC-transporter-ATP-binding-protein
MSGLLKLHEVVVRRQQREILHGISLAFEPGTVTALVGPNGAGKSTLLAVAAGDLRVDAGEVSLLGRPLASYKAGPLARERAVMPQEHGVRFAFSVEEVVAMGRLPHPPDPVADDAQVEAAIDAAELQALRLREVQQLSGGESARTTFARVLAQDTPLLLLDEPTAALDLRHQERTLRSVRSCAEAGACVIVVLHDLNLAAGYADRIVLLEQGRVAADGTPLQVLTEDNLHRVYQQDVVVLEHPRRGVPLVVVT
>CP029773.1|AWT14728.1|2273828_2274434_+|hypothetical-protein
MVAAALATVLGGCATLKARPDVPLAADEGYVVMSVNCATSNIRLITIFASGTRSTSPLADLRGEFEFGCRAGLAAVRAKAGRHYVGYLTEHGYGYVGAVPEDEALTFDVRAGETTYIGEVVVSGLFDRLHSRPTWISVRDREAESLRLLQQTQPWLLERHPFHTRLATPAPGAPSAEVLAEQFRSCTPACDSILALPLFIR

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Crispr_ID: CP029773_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_6

2706212-2706318

Orphan

Consensus_repeat	Method
CCTGAACCGGTAGAGCCGGCCGCTGGCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_6

>merge|CP029773|6|2706212-2706318|CRISPRCasFinder
CCTGAACCGGTAGAGCCGGCCGCTGGCCGGCACTACCATCAGATGCAACCATTCATCGCCTGAGCGTCGCGGAACTCCTGAACCGGTAGAGCCGGCCGCTGGCCGGC

>CP029773|6|5|2706212-2706318|CRISPRCasFinder
CCTGAACCGGTAGAGCCGGCCGCTGGCCGGC	ACTACCATCAGATGCAACCATTCATCGCCTGAGCGTCGCGGAACT
CCTGAACCGGTAGAGCCGGCCGCTGGCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT15077.1\|2702368_2703406_+\|iron-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238567
CP029773.1\|AWT15089.1\|2714397_2715942_-\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
CP029773.1\|AWT15087.1\|2713013_2713721_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
CP029773.1\|AWT15073.1\|2696975_2698505_+\|sulfite-reductase-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|223446
CP029773.1\|AWT17009.1\|2696006_2696321_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226916
CP029773.1\|AWT15076.1\|2701754_2702372_+\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|371179
CP029773.1\|AWT15085.1\|2710755_2712087_-\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
CP029773.1\|AWT15084.1\|2708508_2709285_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|183004
CP029773.1\|AWT15080.1\|2705191_2705992_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP029773.1\|AWT15081.1\|2706400_2707069_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213264
CP029773.1\|AWT15088.1\|2713717_2714398_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
CP029773.1\|AWT15075.1\|2699844_2701827_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP029773.1\|AWT15086.1\|2712110_2713010_-\|rotamase	unknown	unknown	gnl\|CDD\|131979
CP029773.1\|AWT15074.1\|2698855_2699662_-\|molybdenum-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
CP029773.1\|AWT15078.1\|2703408_2704422_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
CP029773.1\|AWT15083.1\|2707745_2708489_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270255
CP029773.1\|AWT15079.1\|2704418_2705195_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|224045
CP029773.1\|AWT15072.1\|2696550_2696979_+\|PAS-sensor-domain-containing-protein	unknown	unknown	gnl\|CDD\|131984
CP029773.1\|AWT15082.1\|2707058_2707742_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
CP029773.1\|AWT17010.1\|2709296_2710511_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT15077.1\|2702368_2703406_+\|iron-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238567	cd01147, HemV-2, Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	7.67164e-65
CP029773.1\|AWT15089.1\|2714397_2715942_-\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
CP029773.1\|AWT15087.1\|2713013_2713721_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	1.10477e-97
CP029773.1\|AWT15073.1\|2696975_2698505_+\|sulfite-reductase-flavoprotein-subunit-alpha	gnl\|CDD\|223446	COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism].	4.90761e-118
CP029773.1\|AWT17009.1\|2696006_2696321_+\|hypothetical-protein	gnl\|CDD\|226916	COG4541, COG4541, Predicted membrane protein [Function unknown].	1.1848e-25
CP029773.1\|AWT15076.1\|2701754_2702372_+\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|371179	pfam10649, DUF2478, Protein of unknown function (DUF2478). This is a family of hypothetical bacterial proteins found in the vicinity of Molybdenum ABC transporter ATP-binding gene-products MobA MobB and MobC. However the function could not be confirmed. This family appears to belong to the P-loop superfamily by alignment to pfam03266. However, the characteristic P-loop sequence motif appears to have diverged beyond recognition in this family.	1.25779e-59
CP029773.1\|AWT15085.1\|2710755_2712087_-\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	1.21336e-125
CP029773.1\|AWT15084.1\|2708508_2709285_-\|transcriptional-regulator	gnl\|CDD\|183004	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr.	7.76918e-56
CP029773.1\|AWT15080.1\|2705191_2705992_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.22099e-09
CP029773.1\|AWT15081.1\|2706400_2707069_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213264	cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.47829e-69
CP029773.1\|AWT15088.1\|2713717_2714398_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	2.86995e-56
CP029773.1\|AWT15075.1\|2699844_2701827_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.9622e-63
CP029773.1\|AWT15086.1\|2712110_2713010_-\|rotamase	gnl\|CDD\|131979	TIGR02933, Putative_peptidyl-prolyl_cis-trans_isomerase_NifM, nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase. [Central intermediary metabolism, Nitrogen fixation].	3.60062e-24
CP029773.1\|AWT15074.1\|2698855_2699662_-\|molybdenum-dependent-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	4.00263e-50
CP029773.1\|AWT15078.1\|2703408_2704422_+\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	2.38723e-74
CP029773.1\|AWT15083.1\|2707745_2708489_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270255	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. ModA proteins serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate and tungstate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.1103e-79
CP029773.1\|AWT15079.1\|2704418_2705195_+\|ABC-transporter	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.31658e-94
CP029773.1\|AWT15072.1\|2696550_2696979_+\|PAS-sensor-domain-containing-protein	gnl\|CDD\|131984	TIGR02938, Nitrogen_fixation_regulatory_protein, nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes. [Central intermediary metabolism, Nitrogen fixation, Regulatory functions, Protein interactions].	1.08636e-22
CP029773.1\|AWT15082.1\|2707058_2707742_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	2.2234e-92
CP029773.1\|AWT17010.1\|2709296_2710511_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	4.77878e-28

>CP029773.1|AWT15080.1|2705191_2705992_+|class-I-SAM-dependent-methyltransferase
MSTPLPTPIDHSARYRQHLQACGFQAKPASAWDARAAQSSWKRRHDDYSEAFLDRLDLSGVATALDVGCGPGLLSLPIAAQVGHVHALDYSTGMLEGLRAAIIRDGVSNVTPWALSWTDDWDDVPRCDLAIASRSLRVPDLEAALRRLDAHARQRACITFATSPRAGVPELAELLGRDWVPMPDHRYPINMLLDMGREPQVDYLPESVRDVAQDADGLVRQAVELFGALDADEEARVRAWHARSPQHRFGMAPTRRWAFIQWATNG
>CP029773.1|AWT15079.1|2704418_2705195_+|ABC-transporter
MSTAPPLLEARALVIGHAGVALGVPFALSVQPGEVLCLLGPNGCGKTTLFRTLLGLLPAVRGEVDLQGTPLRAHDRAARARRMGYVPQAAPLPFAWRVREVVAMGRAAHLGLLSAPGRADEAIADDCLRELGLQALADRTVTTLSGGERQLVLIARALAQQAQLLVMDEPTASLDFGNQLRILDTVRRLAERGIGVLLSTHQPQHALQVADRIALMSAGSLQVLGSAREVATPERLATLYGVDATRVAAALPASGIST
>CP029773.1|AWT15078.1|2703408_2704422_+|iron-ABC-transporter-permease
MRTLPRWTWHAGGWSLLLAMLLLAFSVGQFPVRPAALLHAIGWQLFGIGEPSAPAVQAALWHIRLPRVLAAMLIGAVLSAAGAAYQAMFRNPLVSPDILGVSAGAGLGASLGLFLGLPMLLVQGIAFAGGLGAVGLVCLVAALVRRHDPVLVLVLAGVAVSALLGAGISLLKLLADPYTQLPSITFWLLGGLNAMVIDDLKVTAPLLLIGLVPLVLLRWRVNLLGLGDEEASALGVAVTPLRWTLIAAATLCTAAAVSLAGIIGWVGLVVPHIARLLVGADFRRLLPASLLLGASFLLAADTLARTLAPIELPLGILTAFVGVPCFLLVLARSERRS
>CP029773.1|AWT15077.1|2702368_2703406_+|iron-ABC-transporter-substrate-binding-protein
MRRRALLQAFALAPLLVVNAKLLAMPAQRVLRLGAPKATPKRVFAAGPPAAVLLAAVAPERLLGWPMKVSPEALAQLPASLRTLPVVGRLAGRGSTVSLERLLAMQPDLVLDAGDFDANYRDSAERVWKQTAIPFELIAGRLPDHPAQLRHVGRLLGVAARGEALAQAAEAQLALVHEVLATRPAATRPTVYYGRGSDGLESGLSGSINTEVIEFCGGRNVAASAGAGGLARVSFEQLLAWDPDVILTQDAGFAAQAAQDPRWRALRAVRERRLHCAPVLPFGWLDGPPGVNRLPGLPWLLSRLHPGAVPALAPAALRARIGTLHQLLWGQPLPAALARSLDANA
>CP029773.1|AWT15076.1|2701754_2702372_+|molybdenum-ABC-transporter-ATP-binding-protein
MVRTGRRLPDAGPHLVCQRQLEVLSMTAIQAPRIAAIVHDHSGEPDALLAAFAARQLAAGHRVRGLVHLPHEPTANGNKRMALMDVTDPGSRYPISQALGPASCGCNLDPGGIADASVVLRRALQDHAALAIANRFGTLESEGGGMADELLALMLAGIPLLTAVKLPYLDAWRQFTGGMAVELPADDAALQAWWDACRTAPEAAA
>CP029773.1|AWT15075.1|2699844_2701827_+|TonB-dependent-receptor
MRTCRFVLPLSALLLPLAATAADTTSPPVFTLGTIDVHAERGTSPTVAERSLDAERIQQLDRNTVGDAVSVLPGVSLARNSRNEDMVYLRGFDARQVPVFLDGIPLYVPYDGYVDFGRFTTFDLAEIQVASGGASLLYGPNILGGAINLVSRRPERPLEGDVRLGIADGGERKAAVNLGGRRGDWYFQLGASILKADEFPLPKGFVDYKRVPTDTGKDRRNASRDDHRLSFKLGYTPREGDEYAIGYARQDGEKDNPVYTGTARSGIRYWRWPWWDKDSLYFIGNTRLGEHTTLRTRVYRDTYGNGLDAYTDGSYQVAMDNSSFPSIYDDRTVGGSVTLATTALPRQELQFAIHYKEDQHSERNPHSPTKDFRDVTTSVAIEDRIALTDTSHLRVGIGHDRRDAKRVYFWPTGSTDATNAVLEYVQQLAPDQQWYASAARRTRFPTIKDRYSARMGAALPNPDLKAEHATHFEIGLRGRWWDGGQLQAALFQSRIDDLIQNAVVASRECGGSTCNQAQNIGKARHQGVELGLRQRIGDDWDLQTSYTWLRRTNLEDRRVALLDSPRQRLFMALGWQLLPQLKLQATLEAEQGRRVSYADAARPVRELPGYGITGLKASWSPRDAWDFDLGVRNIGDKWYELADGYPMPGRTWFANANWRF
>CP029773.1|AWT15074.1|2698855_2699662_-|molybdenum-dependent-transcriptional-regulator
MSEAEPPLELQGNLWLSIAGQSVGGRGRFALLGLIDACGSISQAAKRMGMTYKNAWDAVDAMNTAAGEPLVARSVGGRGGGGARLTERGHKLIARFEEVERAHRTFLQSLQATPGLDEDLALIRRIGMITSARNQFHGRVSALATGAVNDEVQIEVAPGLALVATITHGSVESLGLAVGVPAYALVKASSVIVAQGEGARYSARNQFTGTVERITEGAVNDEVVVDIGHGCSVVAVITRASTAALELREGSTATVLFKASSVIVGVPM
>CP029773.1|AWT15073.1|2696975_2698505_+|sulfite-reductase-flavoprotein-subunit-alpha
MNALPTSTPFSRLLVGFASESGNARALAQRLGADLQPHAPQVLPFNDIDVASLGHGDVLLAISSSFGDGEPPANGEQFFETLRQTPTLSGLRYAVFGLGDTGYPSFCGFTKALDAALSERQAQPLLHRVDADLGYEQFFQQWQPVLGQVLDGDVNAGQDLHLQVTAYGEDNAFAAPILERRRLNSSDPAAWHLQLDIAGSGMAYRAGDTLHVVPENDPALLQALATWYGDTAAVTALHDRELRLLSKGVLRELARLGGSELLKGLLKVSQKRELEAYLHGLDLLDVLQDHATPDSVPLARLHELLSPRLPRAYSIASHPCNDQLSLCVREVRYTLRGRERVGTATGSLLHGGDHARVYCRSNPGFHLPDTGEAPLLLVGTGTGIAPLMGLMQELQASACAREVHLVFGEKHSKHDYLYREQLQDWHTRGVLAGLHTAFSRDGAEKVYVQHVLQQRGDDVRDVLARGGHLYLCGNKSHLEGAVREAIDAIGGEGRWDALRGEGRTHCELY
>CP029773.1|AWT15072.1|2696550_2696979_+|PAS-sensor-domain-containing-protein
MSYTPDNAQLLNAMQNVMVISTTDLQGNITYANDLFCTLTGFAREELIGQPHSIVRHPDVPKAVYKDMWDTIKAGKTWTGIVPNLGKGGVLYVVDTTVQPLFDAEGNITSYISIRRVVNDLMQNYDLVEFSKEKFDDFYEAA
>CP029773.1|AWT17009.1|2696006_2696321_+|hypothetical-protein
MIFNGMIHWTSVLTIVLMAAATYLTRIVGFLALRNRTLSKRAVTVMEAAPGCVLISVTAPDFVADKPADLAALAITLLAATRLSMLPTVLIGVVSAGVLRYLMG
>CP029773.1|AWT15081.1|2706400_2707069_-|ABC-transporter-ATP-binding-protein
MWLDLQVQRRLQAAGQSFVLDVALQCTQRQVVLFGPSGAGKSLTLKAVAGLLRPGQGHVRLQGQTLFDAATGVDLPPQRRRLGYVFQDYALFPHLSVRQNVAFGLQKGWLNPRAGQRFEAVEQWLHAFRIDTVGDLLPSQVSGGQRQRTALARALVTQPQALLLDEPFSALDHDLRQHLRQELETVLDKTGIPLLLISHDPQDVAMFGHQVARVVDGRIVGG
>CP029773.1|AWT15082.1|2707058_2707742_-|molybdate-ABC-transporter-permease-subunit
MDLDWSALGLSLKVAGWATAINLVLGVALGALLARRRFPGRELLDSLLTLPMVLPPTVLGYYLLVLIGRNGPIGAWLQSWFGINLVFTWQAAVIAAAVASLPLVFKPARAAFEEVDGQLEQAARTLGVSEAAVFFRITLPLAWRGILAGLLLAFARAMGEFGATLMVAGSIPGRTQTLSIAIYEAVQAGQDGKANALVILTSVVCIVILLLAARLVGGRRRELRDVA
>CP029773.1|AWT15083.1|2707745_2708489_-|molybdate-ABC-transporter-substrate-binding-protein
MKRAGLLLLGLLATLPAWAAELTVSAASSLTESFRELGAAYEKAHPGTKVDFNFAASGVLLQQISRGAPVDVFASADEATMDQAQQQDLLAAGTREVFAVNALWVVVPPQAKAAPRTLKDLAGAGVQRIALGNPDSVPVGRYAKGALEAAGLWPSVQGKTITTQNVRQSLDYVARGEVDAGFVYATDAQAMPERVRRAFAVPVAGRIAYPLAVTKASAQQAEAKRFTAFVRSAQGQAILARHGFGKP
>CP029773.1|AWT15084.1|2708508_2709285_-|transcriptional-regulator
MSSTPPSQGRLGRATPNPAAADDGDALHFCSTCAFSDACMSQGYDKTALGDLHVLVDHVGPFHAGDYIFRAGESFDSIAAVRAGMVKTFVDDSQGNEQVLGFSLPGEVIGLNAIHGSRFPCNAVALDTVHLCRISFPKLSLLATRMPGLQAKLFSLLSAEIGKVATLAANHRTEERMAAFLLDMSERYARRGFSATRFNLTMARTEIANYLRMAPETASRVLRRLSDDGIIAVKQREILLLQPERLAALAVADESDPN
>CP029773.1|AWT17010.1|2709296_2710511_-|coproporphyrinogen-III-oxidase
MSFHVDESEDTALQAALLRQPRHVLFPAADQFSTGFGESGWRAAVRASNEHLIPRGLTFGFQAGRGGRDVPPQAYLDTLLLALQLQADALAEDREVVAMVLQLGLAETLPPPQLGQLLDAVPQHLRTVARPQVEVRLDAGSALSPAQLRAVGCTRLNVIDRADAPGPTLLAQARQVGFTARYYQLRVPASEDIGFIERLHEVLAEAPERILLPAPCALPRDPSAAHWLQAWRLLRAAGYEPIGGDHYQRGDLPNPHGPGDGQRHCDLAGVPRRDRSDFIGLGLSACSQIGEVFYRLEDELGEWRARLQSGYMGVAAGLILSEGERLAAEVAQSIACDHALDAAAFEWRNDEPFEECFAEQLPALSPLLARGWAQWDARVLRLAEEGRLLWRMMASCFRPAAAIA
>CP029773.1|AWT15085.1|2710755_2712087_-|NarK/NasA-family-nitrate-transporter
MNQALAPASAGQQQRALWLSTFAFTVCFAVWMIFSIIGIQISQQLGLNDTQFGLLIATPVLTGSVSRVFLGIWSDQFGGRKVMVLVMLCGAVATWMLTYAQTYTQFLIAALCVGIAGGNFSVGVAYVSKWFPASKQGTALGIFGAGNIGSAVTKLLAPLVMVAAGWTMVAKVWAVALAVTAVLFFLFSKEDPSLEQRRREGVKPVPFAEQMAPLKNLQVWRFSLYYFFVFGGFVALALWLPHYLVGAYGMDVGHAGMLAACYSIPASLFRVVGGWMSDRMGARRVMYWTFGVSAICTFLLAYPDTEYVVKGIHGPIHFHLAIGVVMFTVLVFVLGFFMSLGKAAVYKHIPVYYPQHVGAVGGVVGMIGGLGGFILPIVFGALNDAVGIWSSCFMLLFVLVAAALAWMHFAIRRMERRHFPQIDRETDLPEAIDAAAAERVRGR
>CP029773.1|AWT15086.1|2712110_2713010_-|rotamase
MGSLPKFLPITVIDSAAPVPAEAHSHHHDAAEQGPRSLGQPAPSRLFVDETAISEADIAREMQHHRAMRPEQSRAEAARALVVRELLRLEAQRLGLQVPQGSQVSDEEVLIQQLLEDAIEDRVPTDEDCRRYFDQNPERFRSPDRVRLRHILLAAPADDVAGRFAARTEGERLVGLLKESPHLFADFALRHSRCPSSSEGGDLGWLQRGQTTPEFDRQVFRLREGLAGFPVESRWGYHVVCVDAREEGQPQPFEAVLPQLRDYLELQVRQREVQAYLLQLQERYPVRGLDEIDAEADIG
>CP029773.1|AWT15087.1|2713013_2713721_-|respiratory-nitrate-reductase-subunit-gamma
MSYSLHQFAFQYYPYIAVAVLLIGSWARYDKAMYTWRTGSSQMLSDKGMRIGSNCFHIGILAILGGHLVGLLTPHAVYEHFITSSQKQMLAMVVGGVFGALCFIGISILLVRRLFNARVRATGSFGDTLVLVLLFAQLCLGLYSIRISSGHLDGGVMVQLAEWAQHIVTFRAGAADYIEGVSWVYKMHIFLGLTLFLIAPFTRLVHVWSIPISYLWRPYQVVRRRQATLRYGPRE
>CP029773.1|AWT15088.1|2713717_2714398_-|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MSVLKLVGVLLDYPREELWQHGEELLAACDDPALGAARRQQLRSFVQQLLDTDALDAQAAWLASFDRGRSMSLLLFEHIHGESRDRGQAMVDLVETYRRNGFELDARELPDYLPLLLEFLAHRPGSEAREWLHHIGHIAGMLAARAAERELPHRVLFEILVEAGDGKADLQALRQRASEEVRDDTAEAMDRLWEEEAVRFGAEAPAEDCKPPVRSPARPSHREVQP
>CP029773.1|AWT15089.1|2714397_2715942_-|nitrate-reductase-subunit-beta
MKVRAQIAMVLNLDKCIGCHTCSITCKNVWTSREGVEYAWFNNVETKPGIGYPKEWENQDKWNGGWVRTRAGKLVPRAGGRWRMLAKIFANPDLPQIDDYYEPFDFDYQNLHTAKDSQHQPTARPRSLISGERMQKIEWGPNWEEILGSEFSKRSRDYNFDQVQKEIYGAFEKTFMMYLPRLCEHCLNPACVSACPSGAIYKREEDGIVLIDQDKCRGWRMCVSACPYKKIYYNWKSGKSEKCIFCYPRIEMGEPTVCSETCVGRIRYLGVMLYDADRIAEAASVAAEKDLYQAHLDIFLDPNDPAVIAAARKEGIPDSWLDAARQSPVYKLAIDWKLALPLHPEYRTLPMVWYVPPLSPIQSAAERGRVGMSGELPDVASLRIPMRYLANLLTAGDEAPVVRALERLMAMRAWRRAKNVDGVEDTAVLEQTGLSIAQVEEMYRYLAIANYEDRFVIPTGHREYANDAFGERGGCGFTFGNGCNGDSPADLFGQRKSTTFVVDKGPNHRRKEVV

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Crispr_ID: CP029773_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_7

3099761-3099869

Orphan

Consensus_repeat	Method
AGTCGAGCATGGCTCGACTCTACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_7

>merge|CP029773|7|3099761-3099869|CRISPRCasFinder
AGTCGAGCATGGCTCGACTCTACAGAAAGGCATTTATCAACAAAGGGCCCGGTCACGATGGCTTGGTCGGTCGCTCCAAGCTTGAGTCGAGCATGGCTCGACTCTACAG

>CP029773|7|6|3099761-3099869|CRISPRCasFinder
AGTCGAGCATGGCTCGACTCTACAG	AAAGGCATTTATCAACAAAGGGCCCGGTCACGATGGCTTGGTCGGTCGCTCCAAGCTTG
AGTCGAGCATGGCTCGACTCTACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT15407.1\|3099243_3099690_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
CP029773.1\|AWT15400.1\|3088761_3091476_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP029773.1\|AWT15413.1\|3105819_3106362_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367610
CP029773.1\|AWT15401.1\|3091694_3092759_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235578
CP029773.1\|AWT15417.1\|3108639_3108954_+\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT15406.1\|3097943_3099068_+\|aminotransferase	unknown	unknown	gnl\|CDD\|181651
CP029773.1\|AWT15399.1\|3086101_3088630_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|274418
CP029773.1\|AWT15412.1\|3105221_3105659_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
CP029773.1\|AWT15398.1\|3085068_3086058_+\|NADPH:quinone-reductase	unknown	unknown	gnl\|CDD\|176229
CP029773.1\|AWT15403.1\|3093674_3094631_-\|EF-P-lysine-aminoacylase-GenX	unknown	unknown	gnl\|CDD\|273090
CP029773.1\|AWT15410.1\|3104424_3104874_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
CP029773.1\|AWT15416.1\|3108332_3108632_+\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT15415.1\|3106907_3108302_+\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
CP029773.1\|AWT15404.1\|3094627_3095113_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029773.1\|AWT15414.1\|3106440_3106779_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|223393
CP029773.1\|AWT15411.1\|3104979_3105210_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
CP029773.1\|AWT15405.1\|3095162_3097628_-\|DNA-ligase-(NAD(+))-LigA	unknown	unknown	gnl\|CDD\|236137
CP029773.1\|AWT15408.1\|3099877_3100615_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|235308
CP029773.1\|AWT15409.1\|3100661_3104165_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
CP029773.1\|AWT15402.1\|3092806_3093535_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371422

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT15407.1\|3099243_3099690_+\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.11042e-09
CP029773.1\|AWT15400.1\|3088761_3091476_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP029773.1\|AWT15413.1\|3105819_3106362_-\|hypothetical-protein	gnl\|CDD\|367610	pfam03691, UPF0167, Uncharacterized protein family (UPF0167). The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.	3.7111e-58
CP029773.1\|AWT15401.1\|3091694_3092759_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|235578	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.	0
CP029773.1\|AWT15406.1\|3097943_3099068_+\|aminotransferase	gnl\|CDD\|181651	PRK09105, PRK09105, pyridoxal phosphate-dependent aminotransferase.	0
CP029773.1\|AWT15399.1\|3086101_3088630_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
CP029773.1\|AWT15412.1\|3105221_3105659_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	4.50889e-50
CP029773.1\|AWT15398.1\|3085068_3086058_+\|NADPH:quinone-reductase	gnl\|CDD\|176229	cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.65424e-168
CP029773.1\|AWT15403.1\|3093674_3094631_-\|EF-P-lysine-aminoacylase-GenX	gnl\|CDD\|273090	TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General].	4.70822e-141
CP029773.1\|AWT15410.1\|3104424_3104874_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	5.78134e-67
CP029773.1\|AWT15415.1\|3106907_3108302_+\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
CP029773.1\|AWT15404.1\|3094627_3095113_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.62737e-11
CP029773.1\|AWT15414.1\|3106440_3106779_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	8.37554e-42
CP029773.1\|AWT15411.1\|3104979_3105210_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	3.09896e-39
CP029773.1\|AWT15405.1\|3095162_3097628_-\|DNA-ligase-(NAD(+))-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
CP029773.1\|AWT15408.1\|3099877_3100615_-\|cell-division-protein-ZipA	gnl\|CDD\|235308	PRK04570, PRK04570, cell division protein ZipA; Provisional.	4.16368e-159
CP029773.1\|AWT15409.1\|3100661_3104165_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
CP029773.1\|AWT15402.1\|3092806_3093535_-\|hypothetical-protein	gnl\|CDD\|371422	pfam11218, DUF3011, Protein of unknown function (DUF3011). This bacterial family of proteins has no known function. Most members belong to Proteobacteria.	4.56442e-79

>CP029773.1|AWT15407.1|3099243_3099690_+|hypothetical-protein
MPSPRLLRGRWSQLRNVYAITTVTHQRHPHFDDPHQAAVVVAGLQWIQQEGRCLNLAWAVMPDHVHWLMQLRSGTLAASVQMMKSRCSRLIGINGPLWQRGYHDHAVRCDESLRNQALYIAANPVRAGLAAQLGDHPFAWCRWLDRSP
>CP029773.1|AWT15406.1|3097943_3099068_+|aminotransferase
MTLPASRRRFLQLAGAGLAVAGSGLPQFGQAQPATAAAPAPAEGAVLLNFNECPYGPSPAAQQAARDSIASCGRYRFELAGQVRDAFIEQARIPADHVRLYPGSSEPLNRAAVLWAGPQAGLVVADPTFETLGEVAAAHGAHVQKVPLREDGAHDLRAMAAAAHARPTGLLYVCNPNNPTGSISPPDELAWLLAHKPASTRVLVDEAYLQYSEQPSLITQVAQRDDLIVLRTFSKLYGMAGLRLGAAAAHPDRLRELASLGDNPLPVPALAAALASLRDPQLIPQRRLQNAKLRQATIAWLGKRGFSCLPSEANCFVVDVQRDGSAFAKAMADNGVVIGRSWPIWPQRVRVTVGTEEEMAAFRRAFAKVAGVPA
>CP029773.1|AWT15405.1|3095162_3097628_-|DNA-ligase-(NAD(+))-LigA
MSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLRFSAEPKMDGLAISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGRDWPDVLEVRGEVYMARADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHSGTLAQLGAWGFPVSELCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHNADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVRSVADLYRLNRDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLRLDGNDPGWRAQALAQPASFEWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPWPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDLAQLLVESEIPGITRLRAEKLVAVLPGAQAVLDAEHGQFVNAGLPDDTARGLAEWLDADGHGVMLLAAEKAMQQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSVSKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
>CP029773.1|AWT15404.1|3094627_3095113_-|GNAT-family-N-acetyltransferase
MQTAPLDFRLATRADEELLIALMREFYAEDRIDFDDARVRRGVDALLADPRNGEVLLWLDEAGEVVGYAVIAMGFSLEQGGHFMLLDELYLSHRARGRGRGKQALAICEQRARGRGVSRLRLEVNHHNELARRLYLASGYIDDTRDLLTLPLDHPRPEGIL
>CP029773.1|AWT15403.1|3093674_3094631_-|EF-P-lysine-aminoacylase-GenX
MSEALLRALQQRAALNALVRRFFAERDVLEVETPILSVAGNTEPNIDSFHTDFTGHVDAGGRRRWLRTSPEYPLKRLLAAGVGDCYELGRVFRNGEAGGRHNPEFTMLEWYRVGWDHHRLVQETAELVGQALALVGRSATLRVLSYRELFQQHVGVDPFEADETALRNALGEVHIDPVGLTRDDWLDLLMTHRIQPHFDDAVMTVVHDWPASQAALARIRAGTPPLAERFELYLGAVELANGYHELNDAQEQRTRFQRDLQRRHERGQVQPALDEALLAALPSMPACAGVAVGVDRLLMAMNRTPRIADVLAYDFAHA
>CP029773.1|AWT15402.1|3092806_3093535_-|hypothetical-protein
MVKWFAVVAVPVYSIALWGAWLPSSASAQQVGYDGEVVTCESRDMGWVHCDIDVSNGVDLVRQLSNSSCIRGSEWGTDRSGVWVTLGCRAEFRARRAAGAAAAANEGKRLVRRVVRCESNGRPQSCPVRLDGAPVRLLRQLSALPCREGQGWGYKRNEVWTSRGCQGDFEVADDDGRFVDVPRRLTCESKSKKRRFCGASISVGAVVSEQLSSTPCEEGSTWGWNRNGIWVDGGCRAEFSVN
>CP029773.1|AWT15401.1|3091694_3092759_-|S-methyl-5-thioribose-1-phosphate-isomerase
MNTASDIDYARYDHIRPILWTGDALQLLDQRKLPFVVEHVVCHDSDEVAAAIHALTVRGAPAIGIAAAWGVVLAARDVQAADGAHALQQLEPALQRLNASRPTAVNLAWALARMRRCLNAAGADWKTLLEAEAQAIAEEDLAANRHMGALGAGLIEAGSGVLTHCNTGSLATAGFGTALGVIRAGMAQHRIARVFAGETRPWLQGARLTVWELQQDGIDATLIADSAASHLMKTGAVQWVIVGADRICANGDTANKIGTYQLAIAARHHGVKFMVVAPSSTVDMETVDGSQIEIEQRDPGELYGVGGTRTVAEGIAAWNPVFDVTPGELIDAIVTERGVILNPTTENMRAAFGG
>CP029773.1|AWT15400.1|3088761_3091476_-|DNA-gyrase-subunit-A
MAENAKEIIQVNLEDEMRKSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMNELNAHSNKPYFKSARIVGDVIGKYHPHGDQSVYDTLVRLAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEARMSRLAHELMADIDKETVDFQPNYDEKELEPTVMPTRFPNLLVNGSAGIAVGMATNIPPHNLSESINACIALIDNPEIDVDGLMEYIPGPDFPTAGIINGTAGIVAGYRTGRGRVRIRAKADIEVADNGRESIIVTEIPYQVNKARLIEKIAELVKEKKIEGISELRDESDKDGMRIYIEIKRGESAEVVLNNLYQQTQMESVFGINMVALVDGRPQLMNLKQMLEAFVRHRREVVTRRTVFELRKARARAHVLEGLTVALANIDEMIELIKTSPNPNEARERMLARVWEPGLVGAMLGAAGAEASRPEDLPKGVGLIEGGYQLTEIQATQILEMRLHRLTGLEQDRLTDEYKQLLEVIAGLIHILEDPDRLLQVIREELVNVKAEFGDERRTEIRHSEEDLDILDLIAPEDVVVTVSHAGYVKRQPVSVYRAQRRGGRGRSAAATKEEDFIEQLWLVNTHDTLLTFTSSGKVFWLPVYQLPEAGSNARGRPIINWIPLEPGERVQAVLPVREYADGQFVFFATKNGTVKKTPLGEFAFRLARGKIAINLDEGDALVGVGLTDGERDILLFASNGKTVRFGEDKVRSMGRTATGVRGIKMPAGEEVVSLIVAESAGGIEDDNEDDNGVEEAAANGDAVIDGADDASVQYILTATENGYGKRTPLPDYPRKGRGTQGVIGIQTTERNGKLVAAVLMGSGDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSKDEKLQAVERMDASIDEDEDEVAAATPAATDGTPAAASSEDAAQE
>CP029773.1|AWT15399.1|3086101_3088630_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MSATPQSATAPFRASRHPLVTVLSLLLVVLGLAIGGLGAWLLSLGGSAYYAIAGLGLLVSGILLFGNRRSGALLYALVFIGTLLWTWWESGSDYWRWVPRLGLVTALGIVLALLAPTLREPVSKRLSRSTAGVLMLVFVAAFGLAFAPHGEVDGHQPFPEGAVSAGLEPTRDTTGLQPADQPADGDWPAWGRSNAGTRYSPLQQITPANVATLQPAWQFRTGDMPKKRWGAETTPLKIGDRLYLCTARNRLIALDVASGKELWRFDPKVKDASIPYTAACRGVSYYEQPSMPVLADATLADAAADLALPEPPPSVTRSAAPGTRPACWARIIEGTLDGRIIAVDADSGRPCANFGNNGQVDITLGMGEVPPGYVSITSPPAIVRGVIVTGHQVLDGQRRDAPSGVIQAYDAITGKLRWAWDMDQPERSGLPPREQTYTRGTPNMWTTATGDEALGLVYLPLGNSAGDYWSGSRTENQNRYATSLVAIDVATGKPVWHFQAVRKDVWDYDLGSQASLIDYPTAAGKVPAILLPTKQGDIYILDRRNGQLLTAAEERKVPIGGVEPEQRSPTQLFSLYHTLRREHELTERDMWGITPIDQLVCRIQFRKAYYEGFYTPPSSDRHSIEYPGYNGGSDWGSVSIDTRRGVIVANYNDMPNYNRLVPRAEADRLGWLPREKIRFDKGGAEGAGDPQVGTPYAIQVNAGWRLPFTGLLCKQPPYGGIRAIDLRTGKLLWDRPFGSARGNGPFGIRSGLPIEIGTPNNGGSVVTASGLIFIAAATDDLLRAIDLKTGKELWHAKLPAGGQANPMVYEQGGRQYVVIMAGGHHFMETPNGDYVMAFALPR
>CP029773.1|AWT15398.1|3085068_3086058_+|NADPH:quinone-reductase
MSQIVRIHEYGNADVLRIDNIDVPAPAADEVQIRVKAIGLNRAEVMFRNGAYLQEAQFPSRLGYEAAGVVEAVGCAVSGFTTGDAVSVVPPLDIARWGTYGELANVPARLVVKHPQALDFETAAAVWMQYVTAWGALLEQAHLSAGDFVIITAASSSVGLAAIQIANAVGATPIAVTRGPGKRQALLDAGAAHVIATQEQDLVAEVARITGGAGARVVFDPIGGPQFVPLTEAMARGGILLEYGALSSEPTPFPLFNVLGKSLTLKGYLYSEIVSDDAALARAKAFIVNGLDQGTLAPKIAKVFPFTQIQDAHRYLESNEQIGKVVVTV
>CP029773.1|AWT15408.1|3099877_3100615_-|cell-division-protein-ZipA
MSDTALLRIGILAAGLLLIAAIFLFGRPKKKPQGRRVEGAEPTSGERREPVLGEDGVAVAEGRVEPGMPGEGEQAELGLGETDPGASDLGKRATQDFDKIVSLFVAARAGEQLRGEDIVVAAEKTGLVFGHMNVFHRLVEGHPERGPIFSMASIMKPGSFDMANIRAMETPAIAFFLTLPAPLTALDAWEKMLPTVQRMAELLDGVVLDDSRNALGRQRIAHIRDELRAYDRQHQAPPLTKTPRW
>CP029773.1|AWT15409.1|3100661_3104165_-|chromosome-segregation-protein-SMC
MRLSTIKLSGFKSFVDPTTLHLPTNMTGVVGPNGCGKSNIIDAVRWVMGESSASRLRGDSLTDVIFSGSNARKPVSQATVELIFDNSDHTISGEYASFNEISVKRTVSRDGTSNYYLNGTKCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEARPEDLRVYLEEAAGISKYKERRKETETRIRHTRENLDRLGDLRDEISKQLEHLKRQAKQAEQYQALQEERRVKDAEWKALEFRGLDGRLSKLREGLSQEETKLQQLIADQRDAEARIETSRVRREEAADALNTAQAAVYQVGSTLARLEQQIQHQRELSQRLHKARDETRQALAELGQHISGDEAKLMVLREAVEAATPQLEELQEENEIKQESLREAEDRLASWQQRWEQHTSQSSEASRAGDVERTRVDYLDKQILDADRRREALAAERAGLDVDALEEAFEQLHLQHDTQKTALDELSEDVELRKQGVATVQEQQRNGQNELAELRKQANGLRGRLASLETLQQAALGQEQGAAVAWLKARGLDSAARVGERLDVDAGWENAVESALGQLIEGVLVDDPASLVDALGELGEGHIALVANDGADLKVAPTSLAAHVRGPAAIRRLLAHLHAAKDLSEAKVLQASLPEGDSIITQSGERLGQGWLRVSRSGAAQQGALLREREINELREQIEQLQDREAELEEQLSGFREQLQAAEQQREDAQRALYQAHRAVSELAGQLQGQQGKVEAARTRIDRIEGELKQLQETLEANNEQAREARSRLENAVSSMGDLESTRQRLEGERRQLTEARDLARDAARAVRERSHSLALTLESQRAQLASLSQALERMGTQRGQLDSRLGELHSQLDEGDSPVESLQAEHQNALEERVRADRVLTEARTLLDGIDAELRNYEQTRHQRDEQALAQRERISQRKLDQQALVLSADTLQGAVEKAGFVLQDVLNALPEDARLGDWEQAVHQIDGRMRRLEPVNLAAIHEYGEASQRSDYLDSQHTDLTTALETLEDAIRKIDRETRGRFKDTFDRVNAGVQALYPRLFGGGHAYLELTGEDLLDTGVTIMARPPGKRVSSISLLSGGEKAMTAVALVFAIFQLNPAPFCLLDEVDAPLDEANVGRLANMVKEMSEKVQFLFVSHNKATMEAAHQLSGVTMREPGVSRLVSVDLEEAARLAGAA
>CP029773.1|AWT15410.1|3104424_3104874_-|50S-ribosomal-protein-L9
MQLILLQKVTNLGNLGDLVDVKPGYGRNFLVPQGKAVPATESNKAEFEAKRAEYEAKAQAIHADAEGRKAKLEGASVTIAANASTEGKLYGSVGPRDIAEAFTAAGLPLEKSEVILGEGAFRNIGEYDVLVHLHADVETTVKVVVVAEA
>CP029773.1|AWT15411.1|3104979_3105210_-|30S-ribosomal-protein-S18
MSKFFRRRKFCKFTAEGVKEIDYKDLNTLRQYLTENGKIVPSRVTGTKSKYQRQLATAVKRARFLALIPYTDNHDV
>CP029773.1|AWT15412.1|3105221_3105659_-|30S-ribosomal-protein-S6
MSRHYEIVFMVHPDQSEQVPAMIERYKSLVENGNGTIHRLEDWGRRQLAYPIQNLVKAHYVLLNIEADQAVLNELTESFRFNDAVLRNLVIKRDEADTEQSLIMKSKDEKGDKPERGERRRRDDEEGESTTTADNEAGDDAASAA
>CP029773.1|AWT15413.1|3105819_3106362_-|hypothetical-protein
MERPLFIYHPNAYALSFEEVDGVCDCCGQPRTLRYRGPFYSVLSPDYLCPWCIADGRAVASYEGEFTGWSDIEGVSPDPADPPPTIARELLLEICERTPGYSSWQQSVWLSHCERPCAFLGYAGSEDLQPILDEVRPDVVEVNPRDADWVLEHLSRDGEMIGCLFQCLECGQHRLHVDLG
>CP029773.1|AWT15414.1|3106440_3106779_-|iron-sulfur-cluster-assembly-accessory-protein
MAVSLTPIAFERVQRFVAQTPGALGLRFGVTKTGCSGWGHITDLARDEREGDTVFDQDGVKIYVDAKSLALVDGTVIDFGKHGLSETFTFSNPNATAECGCGESFTTDADKA
>CP029773.1|AWT15415.1|3106907_3108302_+|asparagine--tRNA-ligase
MTVVSVEHALAGKIPEGGEVTVRGWVRTVRGSANLAFVNVSDGSCFAPIQVVAGDSLANFDEIKRLTSGCSVIATGTLVKSQGKGQSFEIQASTLDVVGWVEDPLTYPIQPKPMSPEFLREVAHLRPRTNLFGAVTRIRNCLAQAVHRFFHENGFNWISTPIITTSDAEGAGQMFRVSTLDMVNLPRDEKGAIDFSRDFFGKETFLTVSGQLNVEAYCLALSKVYTFGPTFRAENSHTTRHLAEFWMIEPEIAFADLAEDARLAEEFLKYLFRAVLNERGDDLAFIAERVDKNAITKLEDFINAPFERIDYTDAVSLLQKSGKKFDFPVEWGLDLQTEHERWLTEEHVGRPVVVTNYPEHIKAFYMRLNDDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDARMAQFGLDREHYSWYRDFRRYGSVPHAGFGLGFERLVVYVCGLSNIRDAIPYPRAPGSADF
>CP029773.1|AWT15416.1|3108332_3108632_+|hypothetical-protein
MTLFFALCFVGVAVAGFSAFVIFWPLTLVHVRDRHPALAERFGSGAFLKPDALAWLLRRDYRQQPDRSLSGLATPAWVSLLTLLAGLGMAALLWLASLW
>CP029773.1|AWT15417.1|3108639_3108954_+|hypothetical-protein
MNDITASRDSWWLASLGNTLIWARLRVRPAGTAEVLDSDGNTLSYDSEDTARSQLFDAEFVEYDGLDEEDALVRGFSLHEVQPPQADSDEGLRGRMIQSLGGRA

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Crispr_ID: CP029773_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_8

3117481-3117575

Orphan

Consensus_repeat	Method
GGTAGGTGCCCACCTTGGTGGGCA	CRISPRCasFinder

1 spacers

DEDDh,csa3

The CRISPR arrays of CP029773_8

>merge|CP029773|8|3117481-3117575|CRISPRCasFinder
GGTAGGTGCCCACCTTGGTGGGCACGGATGCACGCCAACCAAGGTTGGCGACTACCGGGGCATGGCGCTCTGGTAGATGCCCACCTTGGTGGGCA

>CP029773|8|7|3117481-3117575|CRISPRCasFinder
GGTAGGTGCCCACCTTGGTGGGCA	CGGATGCACGCCAACCAAGGTTGGCGACTACCGGGGCATGGCGCTCT
GGTAGATGCCCACCTTGGTGGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT15418.1\|3108961_3109600_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377290
CP029773.1\|AWT15430.1\|3125649_3126918_+\|efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
CP029773.1\|AWT15419.1\|3109672_3110335_+\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
CP029773.1\|AWT15420.1\|3111080_3112355_+\|kynureninase	unknown	unknown	gnl\|CDD\|130873
CP029773.1\|AWT15421.1\|3112386_3113754_+\|kynurenine-3-monooxygenase	unknown	unknown	gnl\|CDD\|223727
CP029773.1\|AWT15433.1\|3133779_3134709_+\|methyltransferase-domain-containing-protein	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|369777
CP029773.1\|AWT15435.1\|3135871_3138556_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
CP029773.1\|AWT15434.1\|3134722_3135814_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	unknown	unknown	gnl\|CDD\|236539
CP029773.1\|AWT15423.1\|3115189_3115876_+\|DUF2461-domain-containing-protein	unknown	unknown	gnl\|CDD\|274138
CP029773.1\|AWT15428.1\|3119766_3124743_-\|glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
CP029773.1\|AWT15432.1\|3132477_3133626_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
CP029773.1\|AWT15422.1\|3113753_3115193_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
CP029773.1\|AWT15424.1\|3115875_3116856_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|381321
CP029773.1\|AWT15425.1\|3116898_3117450_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378575
CP029773.1\|AWT15426.1\|3117618_3118563_-\|5'-nucleotidase	unknown	unknown	gnl\|CDD\|377624
CP029773.1\|AWT15427.1\|3118610_3119384_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|179876
CP029773.1\|AWT17026.1\|3110354_3110876_+\|3-hydroxyanthranilate-3,4-dioxygenase	unknown	unknown	gnl\|CDD\|183930
CP029773.1\|AWT15431.1\|3126933_3130107_+\|hydrophobe/amphiphile-efflux-1-family-RND-transporter	unknown	unknown	gnl\|CDD\|273335
CP029773.1\|AWT15429.1\|3124993_3125650_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
CP029773.1\|AWT15417.1\|3108639_3108954_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT15418.1\|3108961_3109600_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|377290	pfam04299, FMN_bind_2, Putative FMN-binding domain. In Bacillus subtilis, family member PAI 2/ORF-2 was found to be essential for growth. The SUPERFAMILY database finds that this domain is related to FMN-binding domains, suggesting this protein is also FMN-binding.	2.48707e-47
CP029773.1\|AWT15433.1\|3133779_3134709_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.63918e-24
CP029773.1\|AWT15419.1\|3109672_3110335_+\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	6.28252e-110
CP029773.1\|AWT15420.1\|3111080_3112355_+\|kynureninase	gnl\|CDD\|130873	TIGR01814, kynureninase, kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. [Energy metabolism, Amino acids and amines].	0
CP029773.1\|AWT15421.1\|3112386_3113754_+\|kynurenine-3-monooxygenase	gnl\|CDD\|223727	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion].	1.59826e-39
CP029773.1\|AWT15435.1\|3135871_3138556_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
CP029773.1\|AWT15434.1\|3134722_3135814_+\|5-methyltetrahydrofolate--homocysteine-methyltransferase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
CP029773.1\|AWT15423.1\|3115189_3115876_+\|DUF2461-domain-containing-protein	gnl\|CDD\|274138	TIGR02453, conserved_hypothetical_protein, TIGR02453 family protein. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.	1.63538e-90
CP029773.1\|AWT15428.1\|3119766_3124743_-\|glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
CP029773.1\|AWT15432.1\|3132477_3133626_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	4.99817e-178
CP029773.1\|AWT15422.1\|3113753_3115193_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
CP029773.1\|AWT15424.1\|3115875_3116856_+\|oxidoreductase	gnl\|CDD\|381321	cd19095, AKR_PA4992-like, Pseudomona aeruginosa PA4992 and similar proteins. Pseudomona aeruginosa PA4992 is the prototype of this family. It is a putative aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor.	1.55475e-72
CP029773.1\|AWT15425.1\|3116898_3117450_+\|hypothetical-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	1.3194e-30
CP029773.1\|AWT15426.1\|3117618_3118563_-\|5'-nucleotidase	gnl\|CDD\|377624	pfam06189, 5-nucleotidase, 5'-nucleotidase. This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (EC:3.1.3.5).	1.99103e-153
CP029773.1\|AWT15427.1\|3118610_3119384_-\|NAD-kinase	gnl\|CDD\|179876	PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.	7.86545e-158
CP029773.1\|AWT17026.1\|3110354_3110876_+\|3-hydroxyanthranilate-3,4-dioxygenase	gnl\|CDD\|183930	PRK13264, PRK13264, 3-hydroxyanthranilate 3,4-dioxygenase; Provisional.	1.72268e-106
CP029773.1\|AWT15431.1\|3126933_3130107_+\|hydrophobe/amphiphile-efflux-1-family-RND-transporter	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
CP029773.1\|AWT15429.1\|3124993_3125650_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	5.69529e-14
CP029773.1\|AWT15430.1\|3125649_3126918_+\|efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	3.45038e-87

>CP029773.1|AWT15425.1|3116898_3117450_+|hypothetical-protein
MKKLTALVVLLVLALAAWWFGGPYMTVNGLSKAIEQRDTARLERYVDFPRVRSSLRAQLNDYLVRQAGPDVAASPFGALLYGLGDQLGGAAVDTMVTPTGIGAMLQGHVLWKRGRNELQGGDAFGPTEPARPLKHAEHHFEALDRFVIDVDRGPGQPPLKVVLEPQGLRWKVVDLQLGMSGSP
>CP029773.1|AWT15424.1|3115875_3116856_+|oxidoreductase
MPLAQQRRTLGRTGLAVSPVGLGCSGFWGHRRFPEQSAALVVEHALAQGVNLLDTGHNYSGFHAEPRLGRILRPLLKRYPRESLVISSKGGTLTGQAGVSGAEQRNFSPAAITASCEASLRNLGLDYLDIYQLHGASQHDINDDLLAALQRLRERGLIRHTGINTHTASTLRWMIDHPTLFDVVLLDYNALQQDREPLIDQLHAVGIGVLAGTVLAQGHLLPPRPRQPRPADAWYLARAWLKPSSRQLMRSARNIRKALAAIRSQRPAQTAFAYALGHPGVASGILGTTRTGSLDEVLATRLEALTAAERQQLVSAFGDGGGSPSH
>CP029773.1|AWT15423.1|3115189_3115876_+|DUF2461-domain-containing-protein
MSTYFSDASFKFLRSLARHNDKAWFNDHRQQYEDHVRQPFLRLLGDLQPALAEVSDHFRADTRGVGGSLFRIHRDARFSNDKSPYKTWQGARLFHERRREVAAPSFYVHLQPGESFVGAGLWHPEPETQRRVRHFILDNPGSWKAAAHAPALRKRFDFEESEKLVRPPRGFPADFEFIDDLKHRNWVMWRSLDDATMTGPRLLSTLGKDLAGLGPFVDYLCAALDLEF
>CP029773.1|AWT15422.1|3113753_3115193_+|exodeoxyribonuclease-I
MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSDVRATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRMCAAPVLPLAAHPTINNRVIVFDLDGEIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNKVPALIAWNHLRTDDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRAATVADVDASLYDGFLGNGDKPLLALARTTAPEQLAALEGHFRDPRLPELLFRYRARNHPDSLAPAERQRWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQALLQSLRDWGQHLQETL
>CP029773.1|AWT15421.1|3112386_3113754_+|kynurenine-3-monooxygenase
MIAHASRSLSIIGAGLAGSLLAILLSRQGWRITLYERRGDPRVADYESGRSINLALAERGRNALRQAGVEDEVMARAVMMRGRMVHPRDGEPQLQRYGRDDSEVIWSIHRSDLNTTLLELAEQAGATVHFHRRLHTVDFDAGYARFIDDRDDSPHDIRFDTLIGADGAGSALRAAMNRRAPLGEDIAFLDHSYKELEIPPAADGSFRIERNALHIWPRGHYMCIALPNHEGTFTVTLFLPNQGDPSFATVNTGAQAEALFAREFADTLPLIPNLRADWEQHPPGLLGTLTLERWHQQGRAVLIGDAAHAMVPFHGQGMNCAFEDCVALARHLMEADDLEGAFAAFEAERKPNARAIQQMALENYLEMRDRVADPAFLLQRELEQELQRRWPTRFVPHYTMVTFLHTPYAEALRRTDLQREMLVAATAGHDSLDNIDWAALEAQIHAQLPVLEGAH
>CP029773.1|AWT15420.1|3111080_3112355_+|kynureninase
MSDLLSRTHAIALDAADPLRPLRNEFLIPRHGGGEQTYFVGNSLGLQPRGAQAAVQEVMKQWGELAVEGHFTGPTQWLSYHRLVSAQLARVVGALPSEVVAMNTLSVNLHLMMVSFYRPTAERPVILMEAGAFPTDRHAVEAQIRFHGFDPAECLVEVQPDEANGTISLNAIEGAITEYGPRLALVLWPGVQYRTGQAFDLDAITRAARLQGARIGFDLAHSVGNLPLRLHDVAPDFAVWCHYKYLNSGPGAVAGAFVHERHHRDTTLPRFAGWWGHEESTRFQMAPQFTPAIGAEGWQLSNPPILGLAPLRASLDLFERAGMEALRSKSLALTGMLEALVRARLSGVLDIITPAEPQRRGCQLSLRVIGGRERGRALFEHLRGIGVLGDWREPDVIRISPTPLYNRYLDVHHFVEEVEAWAGL
>CP029773.1|AWT17026.1|3110354_3110876_+|3-hydroxyanthranilate-3,4-dioxygenase
MLASPINLHAWIEENRHLLKPPVGNKMIDNGDFIVMVVGGPNSRTDYHYDEGPEWFYQLEGEMVLKVQEDGAVRDIPIRAGEIFLLPAKVPHSPRRPPGGVGLVVERKRLPHEMDGVIWHCERCNHKLHEEFFPLQNIETDLPKVFARYHASLELRTCSECGHVDPLPVPAVG
>CP029773.1|AWT15419.1|3109672_3110335_+|carbonate-dehydratase
MKDIHKLLQNNRDWADRIEKEDPEFFHQLAKQQHPEYLWIGCSDSRVPANQIIGMAPGEVFVHRNVANVVAHTDLNCLSVVQYAVDQLKVKHILIVGHYGCGGVHACLHNTRVGLADNWLRHVGDVMQKHTGILDAIETDELKHARLCELNVIEQVANLCRSTIVQDAWARGQKLMVHGWVYSLKDGRVREMGIDVGSQEELQPAYEKALSYVPRKGKRD
>CP029773.1|AWT15418.1|3108961_3109600_+|FMN-binding-negative-transcriptional-regulator
MFTPRAFAETDLLWLDRVLARDPFVTVLTPGSDGLPELTRMPVLYRRDGDQIELRGHWARANPQSRHRGAAKVLIDGPHGYVSASWYPDKEPAARVPTWNYAAAELRGQLQTFDDTEALAELVGAISNRFEASVGQAWQFDATRAEHGPELRAIVGFRFQVEQVQLKLKLSQNHPDANQRAVIAELEQLGTPASTELAQWMRWHREQAARSD
>CP029773.1|AWT15417.1|3108639_3108954_+|hypothetical-protein
MNDITASRDSWWLASLGNTLIWARLRVRPAGTAEVLDSDGNTLSYDSEDTARSQLFDAEFVEYDGLDEEDALVRGFSLHEVQPPQADSDEGLRGRMIQSLGGRA
>CP029773.1|AWT15426.1|3117618_3118563_-|5'-nucleotidase
MGDNSPRLLTVAVTSRALFDLEESHALFESDGVAAYAEFQRQHEDDILGPGVAFPVVRKLLALNQGASPENPRVEVILLSRNSADTGLRIFNSIQHYGLGIIRATFTAGEPTWPYVKPFGTDLFLSANPESVRSALRHGIAAATILPKPPGETAAAAADQIDTGRPAGQLRIAFDGDAVIFGDESERISREQGVEAFGRHERERAREPLSGGPFRGFLSALHTLQEVFPAGDSAPIRTALVTARSAPAHERVIRTLREWGVRLDEALFLGGRHKGPFLQAFGADIFFDDSQHNIDSAREHVAAGHVPHGVANEG
>CP029773.1|AWT15427.1|3118610_3119384_-|NAD-kinase
MSDTPRIAFLASATEPAQMARAAMVSRYGDHAPEQADVLCPLGGDGFMLQTLHRHGHLGKPVFGMKLGTVGFLMNQYRGDDDVQARIAHAEPANLRPLEMVALTESGTSTGSLAYNDVSLLRQTRQAAHIGIDLNGQERVAELIGDGVLVATPAGSTAYNYSAHGPVLPLGSHTIALTPLAPYRPRRWRGAILKADTEVRFRVLDPYKRPVSVTADSHETRDVVEVTIRESKDRRVTLLFDPEHNLEDRILSEQFVF
>CP029773.1|AWT15428.1|3119766_3124743_-|glutamate-dehydrogenase
MKPQKTAAKTVKNKTKPAESEVAVTAGFSLEPVYTALRKRYPAAAQAEAVAFATDFYKRMESDEFPHHSAEEWAALAAETLEFARARKAGKANVRVFNPTAKANGWESPHTVLQIVNDDMPFLVDTVTMSLAEQGVGVHVLGHPVLRFTRDKAGKLVKVGEGDAESVMLLEIDRQPAEAMAAIEQAINKALDEVRAIVRDWQPMKDKALALADDLGSRQLPVDAASRKEAQEFLRWAADNHFTFFGYREYRVEKQGKEDVLAPLNDTGLGLMRGKDKSAARPVKTLAAQGLNATSGLKDALILTKTNARSRVHRAGYMDYIGVLEFDAKGKIIGEQRFLGLFTSSAYNRRPWEIPLVRQRHEHVMKQSGLAPASHSGKALRHILETLPREELFQSSEDELFRTAMGVLGLQERVRSRLFLRRDKYSRFISALVYLPRERFNTDVRLRIEAMLKEALHGEYVDSSVVLGESPLAQVHLIVRPKPGEMLDVDTAELEQKLAQVLRNWQDDLREALVTRHGETEGLRIAARIGKALPAGYIEDNSTAVAANDVSQLDALTGPDDLRLSLQAVPRESGDGLRLKLYRQLDDIPLSDALPMMENMGLRVIAERPYRLSVDNAPVYVQDFEVESTAGAIDAASVDEAFGETFARVWHGDAENDGFNRLVLAAGLHWRQVAMLRGYCKYLLQTGVPFSQAYVEGTFARYPLLARLLVELFEARFDPATGHEGKDDIAAGQAQLKAHFDVLAAGDDATLKVLKTVVDARKGDRDAQMQAARDALLKLMDRVSSLDEDRILRSFMGVIDATLRTSYYQTDANGQHGHVISFKFDSALVPDLPKPRPYREIFVYGPRVEGTHLRFGAVARGGLRWSDRREDFRTEVLGLVKAQMVKNTVIVPVGAKGGFFAKTPPVNGDRDAIFANGVACYKLFIQGLLDITDNIVNNKIVPPVDVVRHDMDDPYLVVAADKGTATFSDIANGLAIAHGFWMGDAFASGGSVGYDHKGMGITARGAWESVKRHFRALGRDSQSQDFTAVGVGDMSGDVFGNGMLLSRHIRLVAAFDHRHIFLDPNPDAATTFVERERLFTVPRSSWADYDAKLISKGGGVYPRSLKSIEITPQVREVLGLDENVKALSPNDLMSAILKAPVDLLWNGGIGTYVKAASEQHSDVGDRANNALRVNGGELRCKVVGEGGNLGMTQLGRIEAAQAGVLLNTDFIDNSAGVDTSDHEVNIKILLNDVVRAKKLTVEQRNKLLASMTDEVAELVLNDNYRQNQALSLMERMAVKRLGSKQHFIRTLEQQGLLDRQIEFLPSDAELSQRKARGQGLTRPELSVLLSYSKLVAFAQLLDSDIPEDPYLSKELQRYFPTPLQKKYADAMERHRLKREIIATAVTNQTINRMGATFLMRMQEDTGRSIAEVAKAYTISRETLDARALWAQIDALDGKVPESVQIDALEVIWKLQRSFVRWLLSRPGAMPGITEAVNRYQGPFNDIRVASGVLPDSQRPTYEALVAEWKEKGLPSALAQQLAELHFLEPAFDIIELARTRKLKPVDVSKVHFRLGDALQLPWLFEQVDALEVNGRWHAVARGVLRDELAANHRNLAGQVLGTKGGSAEAKVAAWMGRDDNSLRFTLAMLAELAEQKTLDYPTVSVAVQRLGQLAAHGA
>CP029773.1|AWT15429.1|3124993_3125650_+|TetR/AcrR-family-transcriptional-regulator
MNPAYLPVALDARDERVFDAVRELLAQQGMQMSMDAVAQHAGCSKQTLYSRYGSKQELLRRVMQRHVGHATGAMVRALRSDDLRASLLQFATDFLEHFNQPHVGQACRLIAADASQFPEEARTLYRHGAGALTLHLAEWIETVCMQGQLRHDDPHFMAELLLSMIAGQDFDKQRFHTPHRDDALLRRRWAEFSVDSFLRAFAPQPSPAPSTNQPRSSS
>CP029773.1|AWT15430.1|3125649_3126918_+|efflux-transporter-periplasmic-adaptor-subunit
MTAPLRTLALTCAVAVALAACKKPEQQMPPPPEVGVIDAKPQTLPLQRELVGRLSPFRSADVRARVPGVLLKRVYQEGSQVKQGQTLFLIDPAPLRASLNASEAQLASARATYANAKVAADRARSLAPQQFVSKADLDNAESAERTALAAVKQAEASVTSSRINLGYTEVTAPISGVANKQQVTEGALVGQGDVTLLTTVDQLDPLYVNFSLSVDELTQLRAQQAKGALALSGDGKATVNVKLADGTTYSEPGTLDFSSTTVDPATGAVSLRALLPNPQQILLPGAFVSFQANLGERNNAYLVPQQALLRDTTGGYVMVVGADGKVVRKNVKTDGAQNGNWLVSDGLAAGDKVIVAGVQKVKEGAPAVAKPWTPGQDANGKPAAGGAAPAGAAPAAGKAPADAAKPEQADAAKPAATDSNKQ
>CP029773.1|AWT15431.1|3126933_3130107_+|hydrophobe/amphiphile-efflux-1-family-RND-transporter
MPKFFIEHPVFAWVVAILISLSGVIAILNLGVESYPNIAPPQVTVSATYPGASADTTEKSVTQVIEQQLTGIDHLLYFSSSSASNGRAQITLTFETGTDPDIAQVQVQNKVSLATPRLPSEVTQQGVVVAKANAGFLMVIALQSDTPAINRDALNDIVGSRVLDQVSRIPGVGSTQQFGSEYAMNIWLNPEKMQGYGLSASQVLAAVRAQNVQFAAGALGSDPSPEGQHFTATVSAEGRFSSPQEFENIILRANADGSRVLLKDIARVAFGANNYGFDTQYNGKPTGAFAIQLLPGANALNVADAVRAKMDELQPSFPSGVTWFSPYDSTTFVKISIQEVVKTLFEAVFLVFLVMLIFLQNFRATLIPTLVIPVALLGTFLGMWMIGFTINQLTLFAMVLAIGIVVDDAIVVIENVERIMTEEGLAPKPATQKAMTQITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPALCATFLKPTHNDNPNIVYRTFNKYYDKISHTYVGHITSAVRHAPRWMILFVVLTALCGFLFTRMPGSFLPEEDQGYALAIVQLPPGSTKGQTNEVFAQMRGILEKQDGYEGMLQVAGFSFVGSGENVGMGFIRLKPWEERKFTAPEFIQNMNGAFYGIKEAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGYELLTQARNILLGNAAQKPEALVGVRPNGLENAPQLQLHVDRVQAQSMGMSVSDVYSTIQLMLAPVYVNDFFYEGRIKRVTMQADGPYRTGQESLKSFYSPSSLTTNADGTNAMIPLNTVVKSEWVSAPPSLSRYNGYSAINIVGSQAPGTSSGEAMQTMESIVNDDLPAGFGYDWSGMSYQEILAGNAATLLLVLSIVVVFLCLAALYESWSIPVAVLLVVPLGVLGALGLSMLRGLPNDLFFKIGLITVIGLAAKNAILIVEFAVEQRAAGKNLRDATIEAARLRFRPILMTSFAFIMGVIPMAISTGAGANSRHAIGTGVIGGMLFATLLGLLMIPVFFVVVRRMLGDKLDEPSKEFMERQRDAETAHRPDR
>CP029773.1|AWT15432.1|3132477_3133626_-|acyl-CoA-dehydrogenase
MDFSFTEEQLMLQDVARRIAQEKIAPSAEHHDRTGEFPLDNIRLLGENGLMGIEVPTEYGGAGMDPVAYVLAMVEVAAADAAHSTIMSVNNSLFCNGILTHGTEEQKQKYVRAIAEGEAIGAFALTEPQSGSDATAMRCRAVKQADGTFVINGKKSWITSGPVAKYIVLFAMSEPDKGARGITAFLIDTDKAGFGRGKTEPKLGIRASATCEIEFNDYVAQAEDVLGQEGEGFKIAMSVLDAGRIGIASQAIGIARAAYEATLEYVKERKAFGAAIGTFQMTQAKIADMKCKLDAALLLTLRAAWVKGQGKRFSTEAAVAKLTASEAAMWITHQAVQIHGGMGYSKEMPLERYFRDAKITEIYEGTSEIQRLVIARNETGLR
>CP029773.1|AWT15433.1|3133779_3134709_+|methyltransferase-domain-containing-protein
MDLEDWSTRLKVFADATRVRLLALLEQEELTVAELSAITRLAQPRVSTHLARLKEAGLVRDRRAGVSAYYRFDEAQLDPAQRALWHALSNGSDDPLLRQDAERVAAVLAHRAADQNWADSVAGDMERHYSPGRTWEALARTALPLLETGDVLDIASGDGVLAELVAPHAKRYICIDTSARVVAAASERLRRLPNVEVREGDMHALPFKDGSFDLVVLMHALTYASKPAQAVTEAARVLRPGGRLLLCSLARHEHKAAVEAYGHVNLGFSDKELRRFVDKAGLQVSSLETVTREKRPPHFEVISLIANKP
>CP029773.1|AWT15434.1|3134722_3135814_+|5-methyltetrahydrofolate--homocysteine-methyltransferase
MSALPWLHPDRANALLDALRERILIIDGAMGTMIQRHGLQEDDYRGERFAGGYDHVHGPACDHAVQEGHDLKGNNDLLLLTRPQVIADIHTAYLEAGADLVETNTFNATSVSQADYHLEHLVYELNKAGAAVARTCCDAVAATTPGKPRFVIGVIGPTSRTASISPDVNDPGFRNTSFDELRDTYREAIEGLIDGGADTLMVETIFDTLNAKAALYALEEAFDARGARLPVMISGTITDASGRTLSGQTAEAFHASLAHARPLSIGLNCALGADAMRPHVETLSQVADCYVSAHPNAGLPNAFGEYDETPEDMASTLRGFAEDGLLNLVGGCCGSTPDHIRAIAEAVAGLPPRALPRVQEQAA
>CP029773.1|AWT15435.1|3135871_3138556_+|methionine-synthase
MTPVRPTRLSGLEPLVITPDLLFINVGERTNVTGSAQFRKLIKEGRYEEAVDVARQQVASGAQILDVNMDEGLIDSEAAMTRYLNLIMSEPDIARIPVMVDSSKWSVIEAGLKCLQGKSVVNSISLKEGEALFREHARKVLRYGAAAVVMAFDESGQADTCARKVEICARAYRILVDEIGFPPQDIIFDPNIFAVATGIEEHDNYAVDFIEATRIIKQTLPHCHVSGGVSNVSFSFRGNETVRQAIHSVFLYHAIAAGMDMGIVNAGAMPIYDELEPELRERVEDVILNRRSDATERLLEIAERYKGKKGAAKTEDLAWRDKPVAQRLAHALVHGLDAFVEEDTELARRASSRPLDVIEGPLMDGMNVVGDLFGAGKMFLPQVVKSARVMKKAVAYLLPYIEAEKARSGDTAKSNGKIIMATVKGDVHDIGKNIVGVVLACNNFEVVDLGVMVPAQKILDAAREHNADLIGLSGLITPSLEEMSHVAREMERQGFNLPLLIGGATTSRAHTALKIDPHYKAPTVWVKDASRAVGVAQSLISRDLREAFVAANEADYAEIRARHRNRGDAKRLVSLEHARGQKFQGGWDSYTPPAPDQPGLHIFDDYPLAELVDYIDWTPFFQAWELAGKFPAILTDEIVGTQASDLYKDARAMLERIVSEKWLTAKAVFGLWPANSIGDDVRVQHPLGETTLHFLRQQVDKPAERPDFCLADFIAPADSGRQDWIGAFAVTAGIGIDAHVARFEAEHDDYNAILLKALADRFAEALAERLHQRVRTEFWGYERAETLDNEALIDEQYRGIRPAPGYPACPEHSEKRRLFDLLQAEANAGMELTESFAMLPTAAVSGYYFSHPQSQYFVVGRLSREQVSDYARRKGVDRAQAERWLASNLDYDPE

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Crispr_ID: CP029773_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_9

4018663-4018751

Orphan

Consensus_repeat	Method
GGTAGAGCCGGCCGCTGGCCGGCCGTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_9

>merge|CP029773|9|4018663-4018751|CRISPRCasFinder
GGTAGAGCCGGCCGCTGGCCGGCCGTCGCGGCGTGTCCGAGCCCGGTTGTAGTTGCCCTACGGTAGAGCCGGCCGCTGGCCGGCTGTCG

>CP029773|9|8|4018663-4018751|CRISPRCasFinder
GGTAGAGCCGGCCGCTGGCCGGCCGTCG	CGGCGTGTCCGAGCCCGGTTGTAGTTGCCCTAC
GGTAGAGCCGGCCGCTGGCCGGCTGTCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT16156.1\|4008167_4009388_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|129987
CP029773.1\|AWT17061.1\|4027459_4028107_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029773.1\|AWT16153.1\|4005258_4005936_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
CP029773.1\|AWT16159.1\|4011980_4013312_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225844
CP029773.1\|AWT16154.1\|4006076_4006724_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
CP029773.1\|AWT16155.1\|4006740_4008099_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273829
CP029773.1\|AWT16166.1\|4024303_4026952_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|226654
CP029773.1\|AWT17062.1\|4029187_4030579_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|182388
CP029773.1\|AWT16168.1\|4028135_4029191_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224753
CP029773.1\|AWT16169.1\|4030571_4031261_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|185376
CP029773.1\|AWT16160.1\|4013292_4014408_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340846
CP029773.1\|AWT16164.1\|4021391_4022735_-\|C4-dicarboxylate-transporter-DctA	unknown	unknown	gnl\|CDD\|234968
CP029773.1\|AWT16167.1\|4027003_4027456_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368292
CP029773.1\|AWT16162.1\|4015043_4018388_+\|alpha-1-2-mannosidase	unknown	unknown	gnl\|CDD\|377950
CP029773.1\|AWT16158.1\|4010962_4011880_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
CP029773.1\|AWT16163.1\|4018869_4021161_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
CP029773.1\|AWT16165.1\|4023067_4024237_+\|porin	unknown	unknown	gnl\|CDD\|226269
CP029773.1\|AWT16161.1\|4014423_4014621_-\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|226826
CP029773.1\|AWT16157.1\|4009603_4010902_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
CP029773.1\|AWT16170.1\|4031503_4032643_+\|porin	unknown	unknown	gnl\|CDD\|226269

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT16156.1\|4008167_4009388_-\|amino-acid-transporter	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.45739e-10
CP029773.1\|AWT17061.1\|4027459_4028107_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.2183e-62
CP029773.1\|AWT16153.1\|4005258_4005936_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	1.39721e-25
CP029773.1\|AWT16159.1\|4011980_4013312_-\|hypothetical-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	6.06231e-18
CP029773.1\|AWT16154.1\|4006076_4006724_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	4.77111e-65
CP029773.1\|AWT16155.1\|4006740_4008099_+\|hypothetical-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	8.86725e-106
CP029773.1\|AWT16166.1\|4024303_4026952_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.36594e-81
CP029773.1\|AWT17062.1\|4029187_4030579_-\|histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	8.07199e-52
CP029773.1\|AWT16168.1\|4028135_4029191_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224753	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism].	3.98242e-37
CP029773.1\|AWT16169.1\|4030571_4031261_-\|DNA-binding-response-regulator	gnl\|CDD\|185376	PRK15479, PRK15479, transcriptional regulator TctD.	1.5429e-72
CP029773.1\|AWT16160.1\|4013292_4014408_-\|glycosyl-transferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	1.7041e-50
CP029773.1\|AWT16164.1\|4021391_4022735_-\|C4-dicarboxylate-transporter-DctA	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
CP029773.1\|AWT16167.1\|4027003_4027456_-\|hypothetical-protein	gnl\|CDD\|368292	pfam05117, DUF695, Family of unknown function (DUF695). Family of uncharacterized bacterial proteins.	9.28001e-17
CP029773.1\|AWT16162.1\|4015043_4018388_+\|alpha-1-2-mannosidase	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
CP029773.1\|AWT16158.1\|4010962_4011880_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
CP029773.1\|AWT16163.1\|4018869_4021161_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
CP029773.1\|AWT16165.1\|4023067_4024237_+\|porin	gnl\|CDD\|226269	COG3746, OprP, Phosphate-selective porin [Inorganic ion transport and metabolism].	1.49569e-106
CP029773.1\|AWT16161.1\|4014423_4014621_-\|zinc-finger-domain-containing-protein	gnl\|CDD\|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	3.15077e-15
CP029773.1\|AWT16157.1\|4009603_4010902_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
CP029773.1\|AWT16170.1\|4031503_4032643_+\|porin	gnl\|CDD\|226269	COG3746, OprP, Phosphate-selective porin [Inorganic ion transport and metabolism].	3.37842e-101

>CP029773.1|AWT16162.1|4015043_4018388_+|alpha-1-2-mannosidase
MTLSDPRRALLPLALALACATTAMPVLAQGLQTSFEPGQPAPAPATGALQVTIGNGPAAPYAAKRNAGYSGLHALRYSSEGGSARRELFKADMTIEADTTLSWLVLPEIVGKDTVASTYVSLDLLLDDGSRVSAGTARDQHGVAIGARAQGDSKTLYPQQWARKAVRLGDVPALKGRRVVAIELEVASADGAPVSGWIDDVRLGTVPRQQPARVSDWVLTTRGTQANGTFSRGNNFPATAVPHGFNFWTPVTDAGALNWLYRWNEQNDAQNRPQLQALALSHQPSPWMGDRQTFQVMPSASRGVPEADRRKRALSFDRSHESARPYRYDVRFDNGIAAAIAPTDHAALFRFDFPEGGDANLLFDNVDARGGLTLDAATQTLSGYTDTRSGLSNGASRMYVAASFDRPWRSSGRLNTGRPTGYIKFDAGSDRRVTMRIATSLISVEQARHNLALEIAAVDTLESVAGRAQDAWDARLARFDIGDASDDQKTTLYSSLYRLFLYPNSGHENVGSAAAPEWRYANQASASDDNTEGSATRSYAAVRDGKVFVNNGFWDTFRTTWPAYALFTPEDAGQLVQGFIEQYRAGGWIARWSSPGYADLMVGTSSDVAFADAWLKGIGGFDPAEAYAAALKNATVVPPDRHVGRKGMDRSTFRGYASADVHEGMSWTMEGALNDFGIANMADALAKRATAPAARERYSTEADYFRHRAASYATMFDPAAGFFQGRKADGRWRVDAKDYDPRVWGHDYTESNGWTFAFTAAHDGEGLAALYGGREKLAAKLDTFFATPETADPALAGSYGGTIHEMTEARDVRMGMYAHSNQPAHHIPWMYLYAGQPWKTQQHVREILSRLYVGSEIGQGYPGDEDNGETSAWYVLASLGLYPLRMGAPEYVIGSPAFEHARVELQGGAVLTVNAANNSRENVYVQSLKINGTPWTKTWVPHDLIAKGATLDFVMGPRPSRWGSGVDDVPRSLTARGQRPQLLHDLLGSGAKATLADGRALPALVDDDASTTVGLGGGATIALTGLSDGTPTMYTLTSGDGRIQGGEWTLEARYGGGSWTVLDQRSGEDFESARQTRPFRIAKPGRYSEYRLRLVAPGRMPLAEIELLAPSTAQ
>CP029773.1|AWT16161.1|4014423_4014621_-|zinc-finger-domain-containing-protein
MSHTATAPANAEKRYTVHRSDLPLSCPTPEMALWNSHPRVYLPIEDEPNGEAQCPYCGSVFVLAD
>CP029773.1|AWT16160.1|4013292_4014408_-|glycosyl-transferase
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLTLDIGRKSLLTLRHLPTLRRLFAEVGADIVHARSRLPAWLGLYAIRAMPAAQRPHWVTTVHGLNSPSRYSAVMTSGERVICVSNTVRDYVQRHYPTVPEATLQVIPRGVDVGQFPRVARADRRPRLALAADYPWLAQVEGPLLLLPGRGTRLKGHAHALQLLADVRAAGVPAQLWMLGTDEPGREAYVADLRRQAAALGVTDAVQISSPTARIAQAYAASDLVLQLSDKPEAFGRTVVEALSVGRPVLGWDHGGVGELLRQLQPSGAVPLGDARALGERALALLAQPPSLPTRIPFTLQAMQRDTLRLYADLAG
>CP029773.1|AWT16159.1|4011980_4013312_-|hypothetical-protein
MPISPADPAVILRDDRAGRWAPWWVLAYVALWPLPGIAETVLGLGALYAAARMVMRRLQRRPHLLSTAAWALTSILFLGYWLPQAFSAIDAIDPAASWTKAAAGLRYLPFMWLVAIAVATPERRRLTFVGLALITAAWTLDALVQAAAGTSPWFWSLEHLKLAVSGRALCPADEAALADRLSGALGPCNLKFGQVLASLSPFLLLPVARRFGNPGWLLAAATLGSVLLLAGSRASWITFALVLAYSGVRQFGWKRLAVLALVAVLGAGVLTASVPQLRERFARTAMAWEGGDRGVDEALSGRARIWEAAVCMIEEHPINGVGARGFRDAYPACVADEDPAVWGSAPALHAHQIVLEILAETGVLGLLLWLAAVAQAWRAWRYAPAAARERARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFAGSLLARDADDSPPMQ
>CP029773.1|AWT16158.1|4010962_4011880_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MSDASTAVRPSLRDPRNWPMFAAMFGAFAIARLPWMLQRALGRGVGWITWRLLGSRRRAAEVNLQLCFPEKDEAWRQRLVRDSFDALGVGVFECIRAWWGSIDSIRPQVRIEGLEHLRQMQAEGRGVLLVSGHFMTLEMCGRLLCDYVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMFANEDIRATVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGKYILKIGAPLENFPSEDVEADTTRVNQAIEEMVREAPDQYLWIHRRFKRQPGGRSDFYK
>CP029773.1|AWT16157.1|4009603_4010902_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSAVLYILLPITVYHLVWRGFRVREYFRRWDERYASYPQPTGQPRVWLHAVSVGEVNAAAPLVNALREQRPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFRPSLALILETELWPNMLFGCRDRGIPVYILNARLSARSLRGYRLLAALIRRALRTVTCVAAQSQDDADRFVQLGAAPEQVQALGNLKFDITTPEVQGFVEQFHARVPAGRPVWIAASTHDGEEQAVVDLHRRLRQQHPDLLLLWAPRHPERFPKVEALAREQGWNVATRRAKQWPEAGTDVFVIDTLGELMPFYACAQVAFVGGSLQPIGGHNLLEPAAMGTAAVTGPHLHNFAEISRRMREAGALLIGEDVQAVGDLLQHLLDDAQAREDMARAGCTLVSNGRGALQRTLALVAPHLPPPRS
>CP029773.1|AWT16156.1|4008167_4009388_-|amino-acid-transporter
MDSDNGRDRDACLGMDHVAALALALLLGGSVIALVGQHTAARAGPAIVLSLVLAALGTAPVLYCLHVLNQQRPAGGGLHGVLQASWGRVGAGVLSGVLLLELVVTSAGVAQSIAGHLQVLLAHCGIEAGNGMPVQLLAATGLWLLGMVGLLPPRHVALIVCALLTVKIGIGLLLLALAARYVHYALWIPWLPEATAPYRYGLGGVLAASVPLLGVFASVGLALGIPGMGRQARARQPLLLAGMLLLAMLLLIVLAALQAGLVEFPALASTRPLSVALQQHPQLHWMMPLLPLAGAAGLAALLLVLMMLAARLATQLRSAAGPAAPGFQVRLTWVAVVLSAALLALLAPIGALPVLPGPATLLVMAALCLAVLHVQVPPSRVLPVLAPMAAVLCLLAAVERMRAWPG
>CP029773.1|AWT16155.1|4006740_4008099_+|hypothetical-protein
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLYDKEGAVQARAALLPQINGQATLNRSRSEADHDANSGTVTSKRRNYTIEGSQTLFNWTQINNLRSQRELSKAADFTLDSANDSLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANTIVAQNTLADNYQALTELTGQPVTNLRGLPADFRPEVPANRGNIDELVHQATNQNPALKAQELKVSAAEAGVQAARGGHYPTLSLGGSWGKSATWGDSTGAGSLSPDARTNSIGLTLSVPIFAGGATQSGVRQALAQRDIAQDGYEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYTFLQNRLLLSQSLGALDVAELQDVNRLLTQDAGNPATTTH
>CP029773.1|AWT16154.1|4006076_4006724_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGHGQKMMKPVIEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELAAAARARLDASGLGTNVRVEVADALSWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLFVIHGRSPAMEALLVKADGSTESLFETDIDYLRGAAPAPQFHL
>CP029773.1|AWT16153.1|4005258_4005936_+|TetR-family-transcriptional-regulator
MSSPTSRKPSAKPAAKAAGPGRPKDLGKRAAILEAAKALFIEQGYTGVSMDAIAAQAGVSKLTVYSHFGDKETLFSEAVQSKCIEMLPDALFVADADGPLRDQLIGIGLAFFELITSDAAISIQRMMMAPETDERLRELFWQAGPERTCEALADFLRARGERGELEIPDYYLAGQQFLTLVKGEVHMHMMCGMPLSPVECDPLTHVTASIDFFLRAYAPRGAGTG
>CP029773.1|AWT16163.1|4018869_4021161_-|NADP-dependent-malic-enzyme
MSNEDFKQAALDYHRMSPPGKIKVSATKPMLTQRDLSLAYSPGVAYACEAIKADPQQASELTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFQKFAGIDVFDIEVDETDPDKLVDIIASLEPTFGGINLEDIKAPECFVVERKLRERMKIPVFHDDQHGTAIIVGAAVLNAMAITGKKIEEVKLATTGMGAAGISCVNMLVQLGLKPENILAFDREGVIHTGRTDLDPEKQRYARDTDKRTLAEIVDGADIFLGLSAPGILTADMVKTMAPDPVIFALANPTPEIMPELARAARPDAIIGTGRSDYPNQVNNVLCFPYLFRGALDVGATAINEEMKIACVRAIAALARRAATDMGSAYGGDTPSFGREYLIPRPFDRRLLVELSAAVAQAAMDSGVASRPIDDMGAYRDKLAQFVYRTSLMMKPVYDRARSDKQRVVYAEGEEEVVLQAVQNVVDDGLAHPILIGRPEVIESRIERLGLRLKIGENVEVTNINDDPRFNEYWQYYHGLTGRRGVTVAAAKNLMRSRPTLIAAVMVARGEADAMLTGIVGRFHKKLGYVRSVLPLEPKVTSTSAMTGVINQQGVFFFVDTHVQEDPTAEQLCEATLQAAYRMKLFGIEPKVALLSHSNFGSHDSKDALKMRQVRELLLKRNPRLNVDGEMQGDTAWDEALRQKLLPGSTLQGRANLFVLPNLEAANIAYNLVRVFTDGVAIGPILMGVNKPVHILTTSATSRRILNMTAIAAVDAQIRKQLEAEKKA
>CP029773.1|AWT16164.1|4021391_4022735_-|C4-dicarboxylate-transporter-DctA
MHIPTAAPAPAKPLPIYRQLYFQVIVAIVLGAILGHYEPLVGEKMKPLGDAFINLVKMIIAPVIFLTIVTGIASMTHLRTVGRVFAKAMAYFLFFSTLALIVGMVVAHVVQPGAGMNINPAELDQTAVHSYVEKSHDLTLVGFLMDIIPKTLVSAFVDGNILQVLFIAVLFGIALASVGEKGKPILNFLEALVAPVFKLVHILMKAAPIGAFGAIAFTIGKYGVGSLVNLAWLVGSFYLTAFLFVAVILGVVCRLCGFSVFKLARYLKAELLLVLGTSSSESALPSLMEKMERAGCSKSVVGLVVPTGYSFNLDGTNIYMTLAALFIAQATNTELTLGHQIALLLVAMLSSKGAAGVTGAGFITLAATLAVVPEVPVAGMALILGVDRFMSECRSLTNFIGNAVATVVVSRWEGALDRNRLQLALDGRESELPPPVDALPEALPAKG
>CP029773.1|AWT16165.1|4023067_4024237_+|porin
MRPTPTLLALSLAALPAFASAADFDNWPTKYTFGDGTELAATANIAYDYNDFSSASGLEDDDAVRRKEFGATLKKKGVYDAMVYYDFQADTWLDVFVRFESKAFFGRDVGRFRFGYMKTPVGLDANTSSRAGSFLETSLPVQAFYEGRRTGVEWVLERPQYLLQAGAYGGKDLQGDNPGTTQAVRAVWTPVKAPGDVIHLGLAYSQENPRGYSDGRDVHHEASARLRARPEAGLTDIRYVDSGVLVTADQIRRTGLEGIWIRGPFSLQAEALRATVTRHDGKPDYTGSGQYAMASWVLTGESRPYNAGAVANIKPAHNYGAVELVARYSRLDLDDGDILGGRQHDLTLGANWYLTSHFKFQANYVKVDASRRGVHSTPEIFELRAQMHF
>CP029773.1|AWT16166.1|4024303_4026952_+|hybrid-sensor-histidine-kinase/response-regulator
MYWLSRHRMLLLTLLVMVGGTALCAVAAGHYAWRRALGEESSQVQRQLQLYGQGLQQRIDRFGTLPQVLALDPDLLHALRVPPSPVERQRLNLKLQRANEVTRTSTLTLVGHDGVAVAASNWNQPTTNVGENYSYRPYYRQALAQGRGRFYGIGMTTGVPGYYLSQAIEEDGKRLGVVVIKVELSALEQEWLSSPDVVLASDDHDVVFLANRDSWRYRLLRPLGADERREMLDARQYADRTLQPLRARTEDVLADGGRMVRLLDPALPQPMLWQSLPLPAEGWNLHLLHDASAATTAGRAAALTGGAAWLALGFLVLFVQQRRRLAKHRLRSRRELETLLKQHAQELRTAQDGLLQAATDADSGLSRSLEHLPQGVVVIDRELRLVAWNSRYLELFRFPVDLVRVGRPIEELFRFNARRGLLGPGPVDEAIERRLNHLRSGRPHMRESEKDDGTVLEIRGNPLPDGGFVTSYADITSYKNAARELRSLADALEHRIAERTHDLDEARREAEQANRYKSRFVASAVHDLLQPLNAARMFVSVLRGKLSDPAQQQTSDHIDAALAAQDAILNSLLDISRLESGSLQLRVRAFAISPLLETLAREFGIAAQSRSLQLDWVDTHAVVVSDEALLRRILQNFLSNALRYTPQGRVLIGCRRAGDQLRIEVHDQGPGIPESLQGEIFEEFRRLNDGVEQERGAGLGLAIVERIGRLLGHRISLRSTLGKGSVFAVSVALGRADDVIAPAAAPVIASEPSDDSPLRQCRVWSIDDDPHVCAATRALLERWGCQVELADGPQGALEIASALNVPQLLLLDVRMGQWHGPDLYEALCTLWKARPPVILVTAERDDALKAHAAENGWGFLLKPVRPPALRALMTQMLLRHRG
>CP029773.1|AWT16167.1|4027003_4027456_-|hypothetical-protein
MRGTPAPFYSLINTTLDGDPAVVVVNTALRTFDGRDAFPWHLRIVIACRGLGEKGMPNPEEVAVITRLGECLEAAVEVDGNAVFLARITVRGERVLLYRVHDPEQANDGLQHLLATSEPVRAWQFQMEYDLGWNLARPELDLPLRDSEVN
>CP029773.1|AWT17061.1|4027459_4028107_-|DNA-binding-response-regulator
MSEYTILIADDHPLLRSAVVQSLRQSLPLAQVREVASADALAEALDAHPDVDLVLLDLTMPGAHGFSALLHVRGSHPDIPVVILSSNDHPRVIRRAQQFGAAGFIPKSAPAETIGEAVQAVLDGGLWFPAMAAERSEADALLASRLAQLTPQQFRVLLCLADGLLNKQIAYELGLAENTVKVHVTAILKKLECHSRTQAAVLVKALEPEGDPGGI
>CP029773.1|AWT16168.1|4028135_4029191_-|ABC-transporter-substrate-binding-protein
MIRLFATAVALLLALPVLAAPGDVRRFPAQGAAMAQLRIHGTTDIEVFAVVIADYQRLHPGTEVVYEDIITQDLYARYLHDRGGPASPDLLISSGMDLQTKLVNDGHALPHRSAQTAALPAWAQWRNEAFGISYEPVVMVYNTRALPSAKVPHTRRQLLDRLRAEGAPLRGKVGTYDIERSSVGYLLATQDAQRGSIAGALLGALGDNDVVREERTGVLLDQLASGQLSLVYNVLGSYAQARVDAGAPLAIVEPEDYTLVVLRTAVIPRTGPHPEEARRFLDYLLSPRGQQVLSREARLMPIVTGNARGDDAPGRSRRPIQLGPGLLVYLDALKRRQFLDAWRSSVEPAGR
>CP029773.1|AWT17062.1|4029187_4030579_-|histidine-kinase
MADARAANAAPGSLRRTLLLYLGALLAVFAVALLFAARDYGQRAANRSYDHLLVSSALSIADSVALVDGQWQVDLPYAALDLLAMAPEDRVFYRVADSRGNLITGYGDLPAPPRRPGTQPQLFDAPYSDETVRFVVVGRSFAAASAQGEVQVQVGQTRRAREAVAQDMVNRALLAIGVLSGLLLALVAFGVHRAFRPLVRVERELSRREPSDLKPLDARVPREMDQMVAALNRFMDRLSSSNETLRAFMAEAAHQMRTPLAALRAQAQLALDDDDPEDMRRSLQAIERNATHMSRLLNQLLSDASVIHRSHLQRFAAVDLAETVHQALHEALPQAGPAPRVQLAMTAEPVQVHGDALLLREAIKNLVDNALKYGGDGPLQIALTVEGGQAVLTIADHGAGIAPGDAERVFERFARGEGAPSGGAGLGLAIVKRVVDSHGGRIDLSNRPQGGLIATIRLPRSSS
>CP029773.1|AWT16169.1|4030571_4031261_-|DNA-binding-response-regulator
MRLLLVEDNPDLADAIIRRMRRSGHAVDWQADGLAAASVLRYQSFDLVVLDIGLPKLDGLRVLAGMRERGDSTPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGFQFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFGFDDEAGPNAIELYVGRLRKKLAAAPLRITTVRGVGYLLEASDGNTDADG
>CP029773.1|AWT16170.1|4031503_4032643_+|porin
MMALAALSAPAFAAEDDRPVTATLGGRLHLDFATFDNDNRGTPNKDDTEIRRAWLDVSGKFFVVDYKLEADFSGDRVEAKDVYLARSFGKAGKLTVGQFKQYFSLDDRTSSNYGSFLERGNAGTTLAPLYRLGASWQANPGDFTWAASIYSLESIDAWQVKGRAAGGRVTWAPSPSEGDVMHLGLSLAREAYDNPGANGTPGLSIRPRPAGHLSDESRLTLVNFSAGRDTDVNKWSLEYAQVRGPLSWQGEFSGATFDDGAQRGDVMAAYGMLSWFVTGESRAYDRKTGRFARVKDIRHKAGAFEVALRYDQMWGAQHLDGAPDLRRGSTEAWTLGGNWYLRDNLRFMLNVIESRNRDRLAGVTVDRTRAVTGRLQYDF

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Crispr_ID: CP029773_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029773_10

4432793-4432903

Orphan

Consensus_repeat	Method
GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029773_10

>merge|CP029773|10|4432793-4432903|CRISPRCasFinder
GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAACCTGCAGCCAGGCATGGCCTGGCTCTACTGCCGGTTGCCTGGGGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAAC

>CP029773|10|9|4432793-4432903|CRISPRCasFinder
GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	CTGCAGCCAGGCATGGCCTGGCTCTACTGCCGGTTGCCTGG
GGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029773.1\|AWT16521.1\|4439041_4439326_+\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
CP029773.1\|AWT16522.1\|4439322_4439712_+\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
CP029773.1\|AWT16523.1\|4439846_4440812_-\|calcium:sodium-antiporter	unknown	unknown	gnl\|CDD\|223604
CP029773.1\|AWT16515.1\|4431815_4432748_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
CP029773.1\|AWT16518.1\|4436617_4437010_+\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
CP029773.1\|AWT16508.1\|4425745_4426333_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
CP029773.1\|AWT16510.1\|4427191_4428667_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184146
CP029773.1\|AWT16520.1\|4438538_4439045_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
CP029773.1\|AWT16511.1\|4428865_4429819_-\|lipid-kinase-YegS	unknown	unknown	gnl\|CDD\|237281
CP029773.1\|AWT16507.1\|4424697_4425729_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
CP029773.1\|AWT16525.1\|4441634_4442180_+\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT16513.1\|4430642_4431317_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|136958
CP029773.1\|AWT16517.1\|4433786_4436618_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
CP029773.1\|AWT16519.1\|4437006_4438542_+\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
CP029773.1\|AWT16516.1\|4432967_4433453_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|226914
CP029773.1\|AWT16509.1\|4426335_4427124_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377344
CP029773.1\|AWT16512.1\|4430102_4430585_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029773.1\|AWT16524.1\|4440885_4441509_-\|hypothetical-protein	unknown	unknown	unknown
CP029773.1\|AWT16514.1\|4431347_4431677_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|236512
CP029773.1\|AWT16506.1\|4423828_4424623_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710

Protein	Function_ID	Function_description	E-value
CP029773.1\|AWT16521.1\|4439041_4439326_+\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	9.48908e-36
CP029773.1\|AWT16522.1\|4439322_4439712_+\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	5.5197e-33
CP029773.1\|AWT16523.1\|4439846_4440812_-\|calcium:sodium-antiporter	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	2.35739e-43
CP029773.1\|AWT16515.1\|4431815_4432748_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
CP029773.1\|AWT16518.1\|4436617_4437010_+\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	7.26377e-63
CP029773.1\|AWT16508.1\|4425745_4426333_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	1.49694e-133
CP029773.1\|AWT16510.1\|4427191_4428667_-\|anthranilate-synthase-component-I	gnl\|CDD\|184146	PRK13565, PRK13565, anthranilate synthase component I; Provisional.	0
CP029773.1\|AWT16520.1\|4438538_4439045_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	2.01606e-62
CP029773.1\|AWT16511.1\|4428865_4429819_-\|lipid-kinase-YegS	gnl\|CDD\|237281	PRK13054, PRK13054, lipid kinase; Reviewed.	4.48924e-157
CP029773.1\|AWT16507.1\|4424697_4425729_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
CP029773.1\|AWT16513.1\|4430642_4431317_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|136958	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.	5.95581e-153
CP029773.1\|AWT16517.1\|4433786_4436618_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
CP029773.1\|AWT16519.1\|4437006_4438542_+\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
CP029773.1\|AWT16516.1\|4432967_4433453_+\|DUF962-domain-containing-protein	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	1.09463e-15
CP029773.1\|AWT16509.1\|4426335_4427124_-\|hypothetical-protein	gnl\|CDD\|377344	pfam04402, SIMPL, Protein of unknown function (DUF541). Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerization. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.	2.17999e-18
CP029773.1\|AWT16512.1\|4430102_4430585_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.78657e-14
CP029773.1\|AWT16514.1\|4431347_4431677_-\|J-domain-containing-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.53677e-18
CP029773.1\|AWT16506.1\|4423828_4424623_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	5.37085e-154

>CP029773.1|AWT16515.1|4431815_4432748_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MPVPTTLLQSDLPGLPLRHRGKVRDVFDIPRERLPAGTPPGEYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFAKTAHLMPNHLTGIDVASVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSGWKDYQRTGKVSGIDLPDGLRQAEQLPEPIFTPSTKAAVGDHDENIDFDAMVKQVGAEMAERVRDATLRIYKFAADYARERGIILADTKFEFGTDADGRLYIMDEMLTPDSSRYWPADEYEVGTSPPSYDKQFVRDYLETLDWGKTAPGPTIPAEIIERTRAKYAEALQRLAGISVD
>CP029773.1|AWT16514.1|4431347_4431677_-|J-domain-containing-protein
MRWYGKLLGFIAGALLFRPNPLFGAVVGLLIGHAFDSDWFRLNKENPYRELGLTSEATDAEVERAYRRLISQYHPDKLGGAAPELQQQAEQKSRRINAAYDRIKTLRKR
>CP029773.1|AWT16513.1|4430642_4431317_-|ribulose-phosphate-3-epimerase
MSNCLIAPSILSANFARLGEEVDNVLAAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGVTAPIDVHLMVEPVDRIIPDFAEAGATYISFHPEASRHVHRTIQLIRSLGCKPGIVLNPATPVDILDWVLDDLDLVLLMSVNPGFGGQAFIPSALDKLRVVRKMIDASGKDIRLEIDGGVKADNIGEIAAAGADTFVAGSAIFNAKTSYQDVIAQMRANVAAAR
>CP029773.1|AWT16512.1|4430102_4430585_-|GNAT-family-N-acetyltransferase
MALLNIRPATVADAGLILHFIRELAIYEKAEHSVQTDEIGIAESLFGADATARALICEVDGEAIGYAVYFYNYSTWLGRKGIYLEDLYVSQEKRGVGAGKALLKYIARQAVAEGCGRFEWSVLDWNTPAIEFYTAAGATPQDEWTVYRLQGQALHEFANG
>CP029773.1|AWT16511.1|4428865_4429819_-|lipid-kinase-YegS
MSTPRWRLILNGKSAGNDALRDAVGHWRGQGVQLDVRVTWEDGDAERYVAEAIDHGVDVIVAAGGDGTLSAVAETLAHREEAADALPSLALIPMGTANDFATSAGIPTAPKEAFALIAQVVPHAIDLLRVDADGTPWWCANLASGGFGTQVTVETDAGLKKMLGGLAYVITGIAKLGRIEPIHARLSGPDFAWEGDFIALGIGNGRQAGGGQQLCPQALIDDGQLDVTVLPELEGEVTATLGQMLKSGTQAALEQLATRARLPWLQVESERPLTLNLDGEPVQARQFRIACVPGRVRMHLPTGCPLLGGVSDLDGGP
>CP029773.1|AWT16510.1|4427191_4428667_-|anthranilate-synthase-component-I
MNSHAQFQLQAAEGHTHIPVVREVLSDLDTPLSVYLKLADGPNTYLFESVEGGERFGRYSIIGLPARRVYAFHGHTLTVREDGQVVETREVADPFAEVEALRSAHSVPKLEGLPGFTGGLVGWFGFECIGYIEPRLAPPAGRDELGTPDILLLDSNELAVFDNLKGRLYLIVHADPRVDGAFEQAQARLDALTAKLRAPGAGYPAPLNSDVLDESDFVSGFTREGFVDAVQRSKEYIRAGDIFQVVLSQRLSVPFKARPVDVYRALRALNPSPYMYFLDVGDLQVVGSSPEILVRLQDGEVTVRPIAGTRPRGATVEQDLALEAELLADPKERAEHLMLIDLGRNDAGRVSKAGTVEVGEQFVIERYSHVMHIVSEVTGQLQPGLSYADVLRATFPAGTVSGAPKIRALEVIRELEPIKRNVYAGSIGYIGWHGDADTAIAIRTAVIKDGRLYVQAGAGIVYDSDPDKEWDETMNKGRALFRAVAQAAKGL
>CP029773.1|AWT16509.1|4426335_4427124_-|hypothetical-protein
MKLLSALLWSSLLATMAPSAWAQANTIPSQPHLLVKGEARRVVMPDRFGLQLNIEETDMDADAARRRVQDNVARVLALFKQNKAVEGSVRADNLRIGPAHRYDNGKQVFIGTRVARQLRASFASVQAMQATLAALKANENLQVSSVAPTYSGEVALRRELKGEAAARTRESAQGLAKAYGTQLRGLYSISDVAPDFAYGIQAGRWPQPVEGEVSGVPEPRLTDITLTGSAAAPAPMAPESIEAGPITYTENVYAIFLISDGT
>CP029773.1|AWT16508.1|4425745_4426333_-|aminodeoxychorismate/anthranilate-synthase-component-II
MLWMIDNYDSFTYNLVQYLQTLGAEVKVVRNDAMSVDEIAAQKPERIVISPGPCTPNEAGVSLELIQRLGPTTPILGVCLGHQGIGQVYGGTVIRAGNIMHGKTSPIRHEGKGVFAGLPDRYQATRYHSLVVDKNSLPDCLEVTAWTENDDGSIEEIMGLRHRQFPVEGVQFHPESILTEHGHALLRNFLQRPAA
>CP029773.1|AWT16507.1|4424697_4425729_-|anthranilate-phosphoribosyltransferase
MSFSPQEALQRTIEHREIFFDEMVDLMRQIMRGDVSPMMTAAILTGLRVKKETIDEIAAAATVMREFALAVPVADSTHLVDIVGTGGDGSHTFNISTCAMFVAAAAGARVAKHGNRSVSSKSGSADAVEALGAAIELQPAQVAAAIEQTGIGFMFAPIHHPSMKVVAPVRREMGVRTIFNILGPLTNPASAPSVLMGVFHPDLVGIQARVLRELGTERAMVVWGRDNMDEISLGAGTLVGELRDGKVREYEIHPEDFGIAMSASRNLRVDSPEQSIAMLRAVLDNQPGPALDIVALNAGAALYVAGVASDIGDGLARARAAIANGSARQRLQQYVETTRALVA
>CP029773.1|AWT16506.1|4423828_4424623_-|indole-3-glycerol-phosphate-synthase-TrpC
MSDILQTILARKAEEVAQRRAQRPLEELQAAVASAPPVRGFVRALQAAVANGDPAVIAEVKKASPSKGVIRPDFRPADIAVSYEFGGASCLSVLTDVDFFQGADAYLQQAREACTLPVLRKDFVIDAYQVYEARVLGADCILLIVAALDDTQLATLSELALSLGMDVLVEVHDIDELERALQVPAPMIGINNRNLRTFEVSLQTTLDMQKAVPRDRLLVTESGILGPQDVALMRDAGIHAFLVGEAFMRVEEPGEGLRQLFFAA
>CP029773.1|AWT16516.1|4432967_4433453_+|DUF962-domain-containing-protein
MQTSTELARPIDRYFASYSDDHRNMINQRIHVVAVPAILWSVVALLWCLPPLITWLQYGIWSAFAMFSAWCFYNKLSRPLGIGMLIQFFVFGCLCRLLEAEIGLHNLFWLAVGVFVVAWIAQFIGHKFEGRKPSFLTDLTYLLIGPAWVMAKFYRKLDWRY
>CP029773.1|AWT16517.1|4433786_4436618_+|monovalent-cation/H+-antiporter-subunit-A
MLPSLPLLLALPFLMAAAVAAFPRSSRSTAAWLAALAPLGGLAILGWLTPSVLDGQVVRTMVPWLPQIGLDFTLRLDGLAWMFAGLVLGIGALVVLYARYYLSQQDNAHRFYCYLLLFMGAMLGMVLSGNLLLLMIFWEMTSISSFLLIGFWSHRQDAREGARMALVITGGGGLALLGGVLLIGRIVGSFDLDVVLAAGEQIRASALYPYALFLVLAGIFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLHPALAGSDLFFYTVSGIGALTLLIGAWNAIFQHDLKGLLAYSTISHLGLITLLFGLSTPMAVVAGVFHILNHATFKASLFMAAGIIDHETGTRDMRKLGGLRRLMPFTSALAIIASLAMAGIPLLNGFLSKEMLFAEALTAGGGPGAMRTAVSIAALLAGVFGVAYSLRFVHDTFFGPGPHDLDRVPHEPPRWMKVPVELLVVICVAVGIAPALTVAPVLHAAAASILGNAMPEYSLAVWHGFNLPLAMSAIGVVGGVALYFGLRRLINLHGVETRTTGRNVFHAQLDALSALAMRLTNGIANGSLQRMLLGLVLVAIVVAAAPFVANPASPDWTAPQPIPLLGWALWLVMMACAVATLRVYKQRLLAVLLVGGVGLMVALTFVFLSAPDLALTQLLVEMVTLVLMLLGMNYLPAQSGPERPRWRKRRDAVIAIIAGAGLGALAYSAMTLPPNTMAGELLGRALPEAYGQNVVNVILVDFRGFDTFGEITVFGIAALVVHALLRRTRMAPEQIMPGPPIKLPVPADLAQIMFPLTLTVSIFLFLRGHNAPGGGFIAGLVLAVPLLIQYVIQGTASVESRFGFDYIRCIGTGLLIALLSGSASMLFGVPFLTSGHLDLHLPLIGDVPLASAIGFDIGVYLVVFGGAMLMLSMMGTIKPSRTRTARKGEIDLQRRSARTGEMH
>CP029773.1|AWT16518.1|4436617_4437010_+|Na+/H+-antiporter-subunit-C
MELALATAIGVLTAIGIYLLLRARSFDVILGMTFLSYATNLLIFAGGRVVLGKAPVLQEGVDSHLGNYTDPLPQALVLTAIVIAFAMTAVSIVLAMRSRSDNHSDHVDAHEPDDDLQDERMPPRQGEDRA
>CP029773.1|AWT16519.1|4437006_4438542_+|monovalent-cation/H+-antiporter-subunit-D
MNHLVILPILIPLLGAALSLFVEHRRYGPKVQRAVAWTALSALALAVGLLFASTVGGDINVYLLGDWPSRLGIALVADRLSAWMLLTTLLLAIPCLLHACSGWDRRAPHFHALFQFQLVGLNGAFLTGDIFNLFVFFEVMLIASYGLLLSGGRGLRMRIGLHYVVFNVTASTLFLIALGLLYASLGSLNMAELSQRIAEVPPAQLTLVKATMGLLLLVFCAKAALMPLYLWLPEAYSRAPAAVAALFAIMTKVGLYSVLRIQMLWFGDDAGAMAGYGRDWLLWAGVATLVLGGLGALAATRLRVLISYLVIVSAATLFIAFSVGTPQVLSAGLYYLPHSSFVAAALFLIADLIRRRRGGASDRKEVVAPMPGKETPAVLFLIGAVSVAGLPPLSGFLAKAALLAGMPAQYTGPVWTAVLVSSLLVIMGLTRGGIRLFWRVPPVEADAPKPRKARLRRVELYAACILLAYGIGMTLAAAPLMRYTDATAAQLLHPSEYVQQLRATPPEIRQP
>CP029773.1|AWT16520.1|4438538_4439045_+|Na+/H+-antiporter-subunit-E
MTAQRSLFRRIIPSPMLSIMVVAFWLLMSDSFTLGQFVLGLVLGVVVPLFAARLDREFARIGTLRPLPKLLCVTLWDILMSNIRVAIQVLGPEKNIHPGFIWLPLDIANIHGIAALTSMITLTPGTVSAALSDDRRFLLVHVLHLEDPQDLIDTIKRRYEAPLMEIFP
>CP029773.1|AWT16521.1|4439041_4439326_+|K+/H+-antiporter-subunit-F
MTGFQIIQTTLVVCMHVVGLAMLLATWRLLRGPTVPDRILALDTLSVTAIAELMLFGMYLNSAIYFEAALVIAMLGFGSTVVLSKFVLRRDIVE
>CP029773.1|AWT16522.1|4439322_4439712_+|Na+/H+-antiporter-subunit-G
MITAIQIGLSILLLFGCFFILVGALGLVKLSTFFKRLHAPTKASTLGVGCVLVCSVCYHIFLGQDPQPRELLITVFLFITAPISAHMMAKAALSLLMETRPSLPGNEPAAEEQLPPPEPVREEETTQNR
>CP029773.1|AWT16523.1|4439846_4440812_-|calcium:sodium-antiporter
MIAIAIAWFLLGLLLLALGGDSIVKAVSGLAQRFGASPFTAGLLLLGVTTSLPELAVNARALAVGQPELALGNAVGSSIVNVGLTLAMAAIAAPLLLRARLQAVLWWSLLAAGVLLILFGLDGRLVRWEGGVLVAGFIVVQVLLLRRGRSESADVQATIAESALSRTSLPLNVLRVLIAALTLYWGARLVVGAAADFGAALGWTPLLVGLLPVAIGTALPEVATAIAAARRGHGDMVLGHVLGSSVVNLLLVIGAMAMLQPLALPASFVRLELPALLAFALVLYPMLRGDLKISRGEGGILLVAFTGWFVLELLLVGAPAL
>CP029773.1|AWT16524.1|4440885_4441509_-|hypothetical-protein
MKHLPIAGLLLLSLAACNRNAEAPAAADATTPSSAGASASPAATPIAAAEPGPARLDGFAGATLGTGIAEVRSGFGAPLQGLGADASGTPLPADDSNDGCYFLHPQDAEDPRLMIEGRKLVRYDVRSAAIAAPGGGKVGMTLGELQVLYPERADVGPDKYDEKAQHLRVRPAQDGAAVIDFALGADGRVSAWRVGQTPQVDYVEGCG
>CP029773.1|AWT16525.1|4441634_4442180_+|hypothetical-protein
MQPRKTDLARTALQAHRAPLDMRQRRLLILCDGQRSIAELTGLLGAEAPAMVIQLVQAGYLSTGQATATPTPSPSAVIAPEPVAAAPAPAAATATPVERRRSLVAARIYVLGILEMQRHPQAAALFRDLQQARAEDEVLQRLQSAMQMLPALTSDGYCQRVRQRLLEALPLEHCDAFAEAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029773_3	3.1\|789685\|35\|CP029773\|CRISPRCasFinder	789685-789719	35	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	250878-250912	11	0.686

1. spacer 3.1|789685|35|CP029773|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 11, identity: 0.686

agcggccggcactacccccatccacgcatggtagg	CRISPR spacer
ataggccgccaccacccccatccacgcaccacgct	Protospacer
*  ***** ***.***************. ...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

560697 : 572786

Enterobacteria_phage(37.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWT13254.1\|560697_561489_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	4.0e-34	34.5
AWT13255.1\|563014_563731_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AWT16898.1\|563848_564904_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.0e-77	45.3
AWT13256.1\|564918_565806_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.1e-96	57.8
AWT13257.1\|565802_566360_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.2e-45	51.1
AWT13258.1\|566356_567250_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.6e-28	37.8
AWT13259.1\|567302_568706_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.6e-46	28.9
AWT13260.1\|568718_570065_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	3.5e-30	27.0
AWT13261.1\|570161_572786_-	helicase	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	3.2e-48	31.1

DBSCAN-SWA_2

923337 : 966528

Agrobacterium_phage(10.0%)

transposase,integrase,protease,portal

attL 939583:939596|attR 967151:967164

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWT13558.1\|923337_923964_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	7.7e-57	57.4
AWT13559.1\|924090_925380_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.9e-135	58.0
AWT13560.1\|925522_927973_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.1e-220	52.0
AWT13561.1\|928190_928463_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	7.7e-22	61.8
AWT13562.1\|929352_931308_+	peptidylprolyl isomerase	NA	NA	NA	NA
AWT13563.1\|931519_932719_-	lytic transglycosylase	NA	NA	NA	NA
AWT13564.1\|932715_933480_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AWT13565.1\|933491_934136_+	hypothetical protein	NA	NA	NA	NA
AWT13566.1\|934148_934601_+	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-42	53.4
AWT13567.1\|934605_935337_+	DNA polymerase III subunit epsilon	A2I2Z6	Vibrio_virus	3.4e-08	30.6
AWT13568.1\|935406_936111_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
AWT13569.1\|936644_937049_+	hypothetical protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	7.7e-18	35.3
AWT13570.1\|937097_938144_-	lipopolysaccharide heptosyltransferase family protein	NA	NA	NA	NA
AWT13571.1\|938164_938914_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
AWT13572.1\|938913_939681_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
939583:939596	attL	NA	NA	NA	NA
AWT13573.1\|939677_940067_+	DUF4440 domain-containing protein	NA	NA	NA	NA
AWT13574.1\|940553_940871_+	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA
AWT13575.1\|941227_952132_+	transporter	NA	NA	NA	NA
AWT13576.1\|952188_952632_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWT16919.1\|952795_953170_+	DUF3592 domain-containing protein	NA	NA	NA	NA
AWT13577.1\|953229_954336_-	hypothetical protein	NA	NA	NA	NA
AWT13578.1\|954982_955423_+	hypothetical protein	NA	NA	NA	NA
AWT13579.1\|955943_956549_+	hypothetical protein	NA	NA	NA	NA
AWT13580.1\|956830_957019_-	hypothetical protein	NA	NA	NA	NA
AWT13581.1\|957983_958847_+\|protease	serine protease	A0A2H4JE36	uncultured_Caudovirales_phage	3.0e-35	33.2
AWT13582.1\|959340_959634_+\|transposase	transposase	NA	NA	NA	NA
AWT16920.1\|961471_962473_+\|portal	phage portal protein	V9IQW4	Stenotrophomonas_phage	3.6e-141	76.8
AWT16921.1\|962599_962860_-	hypothetical protein	NA	NA	NA	NA
AWT16922.1\|962940_963384_-	hypothetical protein	NA	NA	NA	NA
AWT13583.1\|965235_966528_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	3.9e-87	44.1
967151:967164	attR	NA	NA	NA	NA

DBSCAN-SWA_3

999326 : 1017378

Escherichia_phage(35.71%)

integrase,plate,tail

attL 1003210:1003225|attR 1018859:1018874

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWT13623.1\|999326_1000400_-\|tail	phage tail protein	D5LGY1	Escherichia_phage	1.5e-92	50.7
AWT13624.1\|1000390_1000606_-\|tail	phage tail protein	NA	NA	NA	NA
AWT13625.1\|1000589_1001057_-\|tail	phage tail protein	A4PE53	Ralstonia_virus	1.7e-08	29.6
AWT13626.1\|1001059_1003507_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	2.0e-28	23.3
1003210:1003225	attL	NA	NA	NA	NA
AWT13627.1\|1003627_1003918_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.9e-18	58.5
AWT13628.1\|1003998_1004502_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.8e-40	51.2
AWT13629.1\|1004504_1005704_-\|tail	phage tail protein	D5LGY7	Escherichia_phage	7.4e-125	53.7
AWT13630.1\|1005811_1006396_-	hypothetical protein	NA	NA	NA	NA
AWT13631.1\|1006400_1007900_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	2.0e-71	57.3
AWT13632.1\|1007907_1008687_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.9e-44	50.0
AWT13633.1\|1008679_1009576_-\|plate	baseplate assembly protein	V5YTH6	Pseudomonas_phage	1.1e-80	56.1
AWT13634.1\|1009578_1009917_-\|plate	phage baseplate protein	A0A193GYY8	Enterobacter_phage	1.0e-31	61.3
AWT13635.1\|1009969_1010560_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	5.6e-25	37.7
AWT13636.1\|1010556_1011111_-	hypothetical protein	NA	NA	NA	NA
AWT13637.1\|1011464_1011842_-	hypothetical protein	NA	NA	NA	NA
AWT13638.1\|1011838_1012324_-	glycoside hydrolase	D5LH07	Escherichia_phage	2.7e-41	55.0
AWT13639.1\|1012320_1012671_-	hypothetical protein	NA	NA	NA	NA
AWT13640.1\|1012667_1013117_-	hypothetical protein	NA	NA	NA	NA
AWT13641.1\|1013453_1013837_-	hypothetical protein	NA	NA	NA	NA
AWT13642.1\|1013991_1014621_-	hypothetical protein	A0A1V0DYI4	Shewanella_phage	1.4e-21	43.7
AWT13643.1\|1014661_1014889_-	hypothetical protein	NA	NA	NA	NA
AWT13644.1\|1015041_1017378_-\|integrase	integrase	A0A088FVF8	Escherichia_phage	1.4e-135	43.3
1018859:1018874	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2339952 : 2351873

Stenotrophomonas_phage(72.73%)

integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWT14787.1\|2339952_2340204_+	hypothetical protein	A0A1C3S6W5	Escherichia_phage	2.8e-10	43.8
AWT14788.1\|2340348_2340861_-	hypothetical protein	NA	NA	NA	NA
AWT14789.1\|2340857_2341700_-\|integrase	integrase	NA	NA	NA	NA
AWT14790.1\|2342091_2342376_+	hypothetical protein	NA	NA	NA	NA
AWT14791.1\|2342372_2343587_+	hypothetical protein	A0A077JGB2	Xanthomonas_phage	3.1e-38	32.4
AWT14792.1\|2343671_2343878_+	hypothetical protein	NA	NA	NA	NA
AWT14793.1\|2343983_2344307_-	hypothetical protein	S0F2C0	Stenotrophomonas_phage	1.7e-52	95.3
AWT14794.1\|2344299_2344761_-	hypothetical protein	S0F2J2	Stenotrophomonas_phage	6.5e-29	53.8
AWT14795.1\|2344892_2345156_+	hypothetical protein	S0F3S0	Stenotrophomonas_phage	1.1e-20	65.1
AWT14796.1\|2345145_2345340_+	hypothetical protein	NA	NA	NA	NA
AWT14797.1\|2345329_2346385_+	phage replication protein	S0F3F7	Stenotrophomonas_phage	2.2e-205	98.9
AWT14798.1\|2346366_2346636_+	hypothetical protein	S0F2M9	Stenotrophomonas_phage	2.6e-38	88.5
AWT14799.1\|2346639_2346852_+	hypothetical protein	NA	NA	NA	NA
AWT14800.1\|2346873_2347113_+	hypothetical protein	NA	NA	NA	NA
AWT14801.1\|2347872_2348124_-	hypothetical protein	NA	NA	NA	NA
AWT14802.1\|2348299_2348743_+	hypothetical protein	NA	NA	NA	NA
AWT14803.1\|2348742_2349066_+	hypothetical protein	NA	NA	NA	NA
AWT14804.1\|2349062_2349878_+	hypothetical protein	B1NI81	Stenotrophomonas_phage	4.4e-28	34.9
AWT14805.1\|2350257_2350893_+	conjugal transfer protein	S0F2N7	Stenotrophomonas_phage	4.5e-73	74.9
AWT14806.1\|2351051_2351483_+	hypothetical protein	A0A077JCA3	Xanthomonas_phage	7.4e-11	37.5
AWT14807.1\|2351534_2351873_-	hypothetical protein	S0F2N2	Stenotrophomonas_phage	8.0e-53	93.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029773

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection