CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029788	Streptomyces actuosus strain ATCC 25421 chromosome, complete genome	10 crisprs	csa3,casR,DEDDh,WYL,cas4,Cas9_archaeal,cas3,Cas14u_CAS-V,DinG	0	12	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP029788_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_1

1166428-1166510

Orphan

Consensus_repeat	Method
CGCGCCACCGTCGGCCGGGTGGTCCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP029788_1

>merge|CP029788|1|1166428-1166510|CRISPRCasFinder
CGCGCCACCGTCGGCCGGGTGGTCCGGGGGGTTCGGGTGGGCTGCTGCCGCATGGTTGGCGTCGGCTGCGGCCGGGTGCTCCG

>CP029788|1|1|1166428-1166510|CRISPRCasFinder
CGCGCCACCGTCGGCCGGGTGGTCCG	GGGGGTTCGGGTGGGCTGCTGCCGCATGGTT
GGCGTCGGCTGCGGCCGGGTGCTCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT41796.1\|1162360_1162843_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238779
CP029788.1\|AWT47471.1\|1173739_1174849_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
CP029788.1\|AWT41802.1\|1169075_1169909_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183518
CP029788.1\|AWT41794.1\|1160030_1160519_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP029788.1\|AWT41801.1\|1168536_1169079_-\|phosphohistidine-phosphatase	unknown	unknown	gnl\|CDD\|224973
CP029788.1\|AWT41790.1\|1153706_1154306_+\|NADP-oxidoreductase	unknown	unknown	gnl\|CDD\|224996
CP029788.1\|AWT41792.1\|1155484_1157068_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
CP029788.1\|AWT41804.1\|1170693_1171905_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP029788.1\|AWT41793.1\|1158748_1159933_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|99738
CP029788.1\|AWT47470.1\|1157313_1158675_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029788.1\|AWT41805.1\|1171964_1172387_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377163
CP029788.1\|AWT41807.1\|1173317_1173665_-\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
CP029788.1\|AWT41797.1\|1162969_1163416_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP029788.1\|AWT41803.1\|1170060_1170468_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
CP029788.1\|AWT41799.1\|1166560_1167724_-\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|273178
CP029788.1\|AWT41798.1\|1163409_1166400_-\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
CP029788.1\|AWT41795.1\|1160626_1162315_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
CP029788.1\|AWT41800.1\|1167840_1168467_-\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
CP029788.1\|AWT41806.1\|1172481_1173306_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|381357
CP029788.1\|AWT41791.1\|1154446_1155277_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|184875

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT41796.1\|1162360_1162843_-\|sulfurtransferase	gnl\|CDD\|238779	cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.	8.22793e-54
CP029788.1\|AWT47471.1\|1173739_1174849_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	6.69604e-80
CP029788.1\|AWT41802.1\|1169075_1169909_-\|hypothetical-protein	gnl\|CDD\|183518	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional.	6.30433e-09
CP029788.1\|AWT41794.1\|1160030_1160519_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	8.13557e-36
CP029788.1\|AWT41801.1\|1168536_1169079_-\|phosphohistidine-phosphatase	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	1.08837e-43
CP029788.1\|AWT41790.1\|1153706_1154306_+\|NADP-oxidoreductase	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	9.02324e-29
CP029788.1\|AWT41792.1\|1155484_1157068_+\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	2.37325e-160
CP029788.1\|AWT41804.1\|1170693_1171905_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.40734e-97
CP029788.1\|AWT41793.1\|1158748_1159933_-\|cystathionine-gamma-synthase	gnl\|CDD\|99738	cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.	3.78827e-122
CP029788.1\|AWT47470.1\|1157313_1158675_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.0075e-06
CP029788.1\|AWT41805.1\|1171964_1172387_+\|hypothetical-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	1.07647e-30
CP029788.1\|AWT41807.1\|1173317_1173665_-\|transcriptional-regulator	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	6.41019e-15
CP029788.1\|AWT41797.1\|1162969_1163416_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.20677e-39
CP029788.1\|AWT41803.1\|1170060_1170468_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	2.866e-49
CP029788.1\|AWT41799.1\|1166560_1167724_-\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|273178	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD. All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely homologous to the MRE11 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	7.44637e-53
CP029788.1\|AWT41798.1\|1163409_1166400_-\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	9.40845e-70
CP029788.1\|AWT41795.1\|1160626_1162315_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	3.65598e-163
CP029788.1\|AWT41800.1\|1167840_1168467_-\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	8.72845e-65
CP029788.1\|AWT41806.1\|1172481_1173306_+\|oxidoreductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	1.07528e-155
CP029788.1\|AWT41791.1\|1154446_1155277_+\|alpha/beta-hydrolase	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	4.70746e-28

>CP029788.1|AWT41798.1|1163409_1166400_-|SMC-family-ATPase
MRLHRLDITAFGPFGATQTVDFDALSAAGLFLLHGPTGAGKTSVLDAVCYALYGSVPGARQSAQGITLRSDHAAPGTRTEVTLDLTVAGRRLEITRQPPWERPKLRGKGMTTDKAQSWLREYDAAAGTWKDLSRSHQEIGEEITQLLGMSREQFCQVVLLPQGDFARFLRADAEARGRLLGRLFDTQRFADVEKRLAERRRTTEAQVRDGDAALLADAHRMQQAAGDAMELPELSPGEPGLAETVLGAAAVARATAREQLTVAHCRLAAAESAQAAADHALADARELARLQRRFTEAQERARRLEEDADTHRAAQARMDRARKAETVAPALELRDAAEAEHRRAAAAEARARALLPQSLADAGAAGLAAAARRAAEELGGLESARRAEQRLSDLLDERAGLDRQERADDDVLAEAESWLDGWDDRRAALQARIDTAQEAATRSEQLAGRREPAQQRLRAARLRDRLTGEADGAAAEERAARTRMLEAKAHWLDVRERRLNGIAAELAARLTDGEPCAVCGATEHPAPARKDAGHVDRAAEEQAHAAYQEAEEAHTARERRLGAVREELAAATAEAGDTPTAQLTREADELERQYAEARRAASALHAAHEELRRAEQEHERRTAARQQAQLRAASRAARRDTLDRERAALEGELAQARGGAASVAARAADLQRQAARFTDAADAARLAEDTAQRLKDADARLADAAFRAGFDTPQAAADALLDDAGHRELQRRLDARHTEEAAVRAILAEADTASAARRPPAALADAEEAASAAAGRLREAASARDAAARRCAELDRLSERATASVRRLAPLREEYDRVARLAALTAGTSADNERRMRLESYVLAARLEQVAAAATARLQRMSSGRYTLVHSDDRTGRGRSGLGLHVVDAWTGRERDTATLSGGETFFASLALALGLADVVTDEAGGVRLDTLFIDEGFGSLDDQTLDEVLDVLDSLRERDRSVGIVSHVPDLRRRIHAQLEVVKGRSGSVLRQRGH
>CP029788.1|AWT41797.1|1162969_1163416_+|ArsR-family-transcriptional-regulator
MTVFSPDATDWRILDVLQREGRASFAELARAVSMSPSAVTERVRRLEEAGVIQGYAAVVDPERLGLPILAFVRLRYPTGNYKPFHDLVAVTPEILEAHHVTGDDCFVIKVAARSMRHLEEVSGKIGALGSVTTSIVYSSPLPRRPLSQ
>CP029788.1|AWT41796.1|1162360_1162843_-|sulfurtransferase
MTTTTTAANPVLRVAPAAPAEAAAYFRASLVFHADVSDVAAALAADGDPGFVVLDSRSTEAWDQGHVPGAVHLPTALIPEQAEQLLDKNVPVVTYCWGPGCNGATRAALALAELGYQVKEMLGGFEYWAREGFEFETWQGRERRDADPLTAPVDGDDCGC
>CP029788.1|AWT41795.1|1160626_1162315_+|DUF885-domain-containing-protein
MSETKIPLPREVADAYVDELIALDPITGTYLGVAESSSRLPDTSPAGHEALAELARVTLAKLAEAERRPGGDSDAERRCARLLRERLTAELAVHEADELLRAVGNLHTAPHQIREVFTITPQETEEDWAAIAERLRAVPAAFAGYRESLALGLERKLYGAPRPTATFVGQLTEWADTGEGRGWFEDFAAAGPEALRAELDEAARAATAAVAELRDWMRDVYAPAVEGAPDSVGRERYGRLARYFTGADLDLDEAYAYGWAEYHRLRAEMEREAEKILPGAESPWAALAHLDEHGRHIEGVEEVRVWLQGLMDEAIRKLDGTHFDLAEPVKRVESCIAPPGGAAAPYYTAPTEDFSRPGRTWIPAMGRTRFPVYELVSTWYHEGVPGHHLQLAQWAYVAATLSRYQATVGGVSANVEGWALYAERLMDELGFLTDAEQRLGYLDAQMMRAVRVIVDIGMHLELEIPADSPFHPGERWTVDLAQEFFGRHSSLPADHVESELIRYLTMPGQAIGYKLGERAWLLGREKARERHGDAFDLKAWHMAALSQGSLGLDDLVAELSAL
>CP029788.1|AWT41794.1|1160030_1160519_+|AsnC-family-transcriptional-regulator
MAESVVLDPVDLHLLRLLQNDARTTYRDLAAQVGVAPSTCLDRVTRLRRSGVILGHKLRLDPARLGRGLQALLSVQVRPHRRELVGPFVERIRALPEALTVFHLTGPDDYLVHVAVADMADLQRLVLDEFTARREVARVETRLIFQQWDCGPLLPPGPAPSV
>CP029788.1|AWT41793.1|1158748_1159933_-|cystathionine-gamma-synthase
METPVDTHRTATRALATEAVHAGRDDLARQGLHAPPIDLSTTYPSYDSRAEAARIDAFAATGAELEGPPVYARLGNPTVARFETALARLEGTEAAVAFASGMAALSAVLLARASMGLRHVVAVRPLYGCSDHLLTAGVLGSEVTWTDPAGIADALRADTGLVMVESPANPTLAEVDLRAVAHACGSVPLLADNTFATPVLQRPAEQGARLVLHSATKYLGGHGDVMAGVVACDEEFAGRLRQVRFATGGVLHPLAGYLLLRGLSTLPVRVRAASATAAELARRLAADPRVARVHYPRIGGAMVAFETHGDPHAVISGVRLITPAVSLGSVDTLIQHPASISHRIVDADDRRGAGVSDRLLRMSVGLEDVEDLWADLDQALAGAQVPAEAASAAR
>CP029788.1|AWT47470.1|1157313_1158675_+|GNAT-family-N-acetyltransferase
MHHWRRDVVELAALFTAVAVADAVANLIGHGPDGPALLLISAVVLVATAAFHTWWARRHGHAPPTSDTGARPLPAAQPAGPDGRPDAGPSVLWRMRTTVRDEPGSLAALCTALADRRVDILSLQTHPLGETTVDEFLLRAPGDLAAADLTRAVAAAGGTGTWIERADAHDLVDAPTRLLGLATRTALDAAELPLALRQLLGRCTIRQSPATLAREGHGAQAVPVEGVLEDTVMRLRGPEGGVLTVERPYLPFTPTEFARARALVELDARLGPRVPVGQDVLTLPEGNAITVRRADPGDLEAAKAMHERCSARTLSMRYHGPVSDADRYLTHLLSPRFGRTLAVQTASGRIVGLGHLLWDGDETEVALLIEDDWQRRGIGGELLTRLVAMAVEAGCESVYAVTQASNTGMVAAMRGLGLPLDYQVEEGTLVITARLEAAPAARRLPYGEHIAQD
>CP029788.1|AWT41792.1|1155484_1157068_+|alkaline-phosphatase
MSHRPLPGRRSVLRGSLAASAALTLPAGLGAAPAFALSGRPEAGWGVQAGDVTADSGLVWVRSDRPARMVVETSATESFRNPRRRLGPLLGADTDFTGTTRLRGLPPGEQIHYRVLLADPDDPRRTGEPVTGTFRTAPVRRRQGVRFVWSGDLAGQGWGINESIGGYRIFDAMAKLDPDFFLCSGDNIYADGPIPATAALPDGSLYRNVTTEEKAHVAVSLADYRGNFRYNLLDRALRRFNAQVPSIVQWDDHEVRNNWYPGEVIGTGTAYPAGTRLDDLAARARRAFAEYVPVSTLSGRPDGRIYRVVHHGPLLDVFVLDMRTYRNANSPDDQTTDPQGILGREQLEWLKRELSRSRAVWKVIASDMPLGLVVPDGVEGRPNFEAVAQGDPGAPLGRELQIAELLRFVKHRGITGTVWLTADVHHTSAQHYDPARAAFKDFAPFWEFVSGPLNAGAFPASALDGTFGPDRVFVKAPARANVSPAEGYQFFGEVDIDGDSGEMTVRLREQDGTVLFTKVLQPGRVGQ
>CP029788.1|AWT41791.1|1154446_1155277_+|alpha/beta-hydrolase
MSATVSFKVPSAHGPQAVTVSYTRRGRGEPLLLLHGIGHHRQAWDPVTDILAADRDVIAVDLPGFGVSPALPDGLAYDLPTTTAVFGAFCAALELDRPHVAGNSLGGLIALELGRARLVRSVTALSPAGFWSEAERRYAFGVLLAMRHIARRLPLPLVEQLSRSAAGRTALTSTIYARPARRSPEAVVAETRALAEAAGFAPTLRAGTTVRFTDDLAGLPVTVAWGTQDRLLLRRQGVRAKQLMPRARLVRLPGCGHCPMNDDPALVARVILDGSR
>CP029788.1|AWT41790.1|1153706_1154306_+|NADP-oxidoreductase
MVALGHEVTLGSRAKDNPVALDWARQAGGRAAAGTFAEAAAAAEVVVNAVGGRVALSALEAAGAQHLDGKVLIDVSNPLAFEEGQARLSPVESDSVAEQIQRAFPHARVVKTLNTVNCQVMVDPGRVPGEHVLFVCGEDAEAKEQVTALLGEFGWPAGRVLDLGGIREARAVEMWLPLWLSLFRAFGHADFNLELRRAR
>CP029788.1|AWT41799.1|1166560_1167724_-|exonuclease-SbcCD-subunit-D
MRLLHTSDWHLGRAFHRAPMLDAQAGFVDHLVTTVRERGVDAVVVSGDVYDRAVPPLSAVELFDDALHRLAALGVPTVMISGNHDSARRLGVGAGLIGRAGIHLRTDPAACGTPVVLQDSFGDVAFYGLPYLEPALVKDEFGVDKAGHEAVLAAAMERVRADLAGRAPGTRSVVLAHAFVTGGQPSDSERDITVGGVASVPAGVFDGVDYTALGHLHGCQTITDRVRYSGSPLPYSFSEAGHRKTMWLVDLGADGSLTAERVDCPVPRPLARLRGTLEDLLADPALAEHEEAWVEATLTDPVRPADPMARLAERFPHTLSLVFDPDRAPDDPGVSYARRLAGRSDQQIAEDFVAHVRGAGPDSHEQAILRDAFDAVRADDAVREVAR
>CP029788.1|AWT41800.1|1167840_1168467_-|YigZ-family-protein
MQDEYRTIARAGVHETEVNRSRFLCALAPAASEQEAQEFIAAVRKEHADATHNCWAYVIGADAAVQKASDDGEPGGTAGVPMLQMLLRRDMRYVVAVVTRYYGGVKLGAGGLIRAYGGAVGEALDALGTLTRRRYRLATVTVDHQRAGKVQNDLRATGREVRDVRYGEAVTLEIALPDADVDAFRAWLADATAGTAAFELGGEAYGDA
>CP029788.1|AWT41801.1|1168536_1169079_-|phosphohistidine-phosphatase
MTARAGTGPLRRLVVLRHAKSARPEDVNDHERPLARRGRRDAPAAGRALAAADRLPDLAVCSTAVRARRTWELASAEWGTPPPVRYDPRLYGADAPTLLDVARETPPETGTLLLVGHNPGLADLVLALAGHALDDTLDRVRAKFPTSAIAVLTWYGPTWSALHPGAALLTAVEVPRGGKH
>CP029788.1|AWT41802.1|1169075_1169909_-|hypothetical-protein
MLRITDDRTGESVEAAPVRRGLTRVEAHAPGWDAGALRVLLVADLLVRALELGGTPVWALLNAERQRAELRAGAAALGIRPLEDSHDTTTGLGEAQIVHVAQDPATAPGGVLVRVGPVVASPWASTAPGDRDGVVGRGGPVPGDPGGVAGPGGSVPGAWGGGVDPTTVRLALLSVPRGAPVRLDDASLGAAGETLARWRRAVADWARRPSRPIPDDVRARLRAAWEDDLDIPAVLSVLRGVEEAAPDELPDGARFETFVYADRLLGLDLARDLGAPA
>CP029788.1|AWT41803.1|1170060_1170468_+|CoA-binding-protein
MYGDDATIRKILTELGDTWAVVGLSSNQGRAAYGVAAVLQRYGKRVVPVHPKAETVHGEQGYASLADIPFDVDVVDVFVNSDLAGAVADEAVAKGAKAVWFQLGVIDEDAYARTRAAGLEMVMDRCPAIEIPRLG
>CP029788.1|AWT41804.1|1170693_1171905_+|MFS-transporter
MPLALLALAIGAFGIGTTEFVIMGVLPEVADDFGVTIPTAGWLVSGYALGVVFGAPLLTVLGTKVSRKKMLMFLMALFVVGNALSALAPAFGLMLAGRIVASLAHGAFFGIGSVVAADLVAPQKKASAISLMFMGLTVANIVGVPLGTYIGQAAGWRVTFLLVAALGIVGLLGVAKLVPETGRPEGADVRAEFAAFRNVQVWLAMAMTVFGYGGVFAAITYITPMMTDVAGYSAGAVTWLLVLFGVGMFAGNLIGGRFADRALMPMLFGSLAALSLALLLFTATAHNKVLAAVTLTLIGALGFATVPPLQKWVLDQASAAPTLASAANIGAFNLGNALAAWLGGIVIAAGLGYTSPNWVGALLSGFALLLSFLAAFLHRRARTGGRVVTGSPAREAVPAAARH
>CP029788.1|AWT41805.1|1171964_1172387_+|hypothetical-protein
MTTAPAIAPLTTTDAEVLLDAAHRAAEAAGVAVSVTVLDAGGHLLAFRRDDRALLISGETSTRKAYTALQLDSATADLVDAVKPDGPFHSLPTALDKPLLFIAGGLPVRRDGRPVGAIGVGGGAPEQDHAFAAAAVAALG
>CP029788.1|AWT41806.1|1172481_1173306_+|oxidoreductase
MTSVPTVTLNNGVEIPQLGFGVFQVPDAETTAAVTAVLQAGYRSVDTAAIYGNESGVGAALAASGLPREDLFVTTKLWNADQGYDATLRAFDDSLARLGLDHVDLYLIHWPAPGRDLYRESWKAIERLVADGRVRAAGVSNFQPAHLRRLLDGASLVPAVNQIELHPGLQQAELRALHAELGIATEAWSPLAQGAVLGDDAITAIAGRHGKSPAQVVLRWHLQLGTVVIPKSVTPARIRENIDVFDFSLSEEEMTAIAALDRDLRTGPHPDTLD
>CP029788.1|AWT41807.1|1173317_1173665_-|transcriptional-regulator
MHLSPARDAHPRTPGEEQFALAAELLALLGDRTRLALLHALASGEADVTTLTESCGAARPAVSQHLARLRLAGLVNTRKEGRRVIYSLRDGHLRRLVDEALNVADHRLSDRPLHD
>CP029788.1|AWT47471.1|1173739_1174849_+|cation-diffusion-facilitator-family-transporter
MSDRHDHEHRHGEDHEHGHDHHHPDDGHHGHGQHQHSHGRTPGLRHRLAHLLTPHSHDTADKVDAALESSARGMRALWVSLAVLCVTALAQAVVVAASGSVALLGDTVHNAADALTAVPLGIAFVLGRRAATRRFTYGFGRAEDLAGLVVVLTIAASAAFSGWAAVVRLLDPRPVEHVPAVAVAALVGFAGNEWVARHRIRVGRSIGSAALVADGLHARTDGFTSLAVLVGAGGSALGWHLADPLVGLAITAAIALVLRDAAREVFRRVLDAVDPALVDRAERALAGVPGVRGVGELRLRWIGHRLRAEVAVVVDGEATVRQAHAIAVDAEHALLHAVPRLTAALVHADPAPAPGEPDPHLTLAHHATA

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Crispr_ID: CP029788_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_3

2568146-2568225

Orphan

Consensus_repeat	Method
GGTTGCCCGCGCAGTTCCCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029788_3

>merge|CP029788|3|2568146-2568225|CRISPRCasFinder
GGTTGCCCGCGCAGTTCCCCGCGGTGTGCCTGCGGCGGCCTGTGCGGGTGGGTGGGGGGTTGCTCGCGCAGTTCCCCGCG

>CP029788|3|3|2568146-2568225|CRISPRCasFinder
GGTTGCCCGCGCAGTTCCCCGCG	GTGTGCCTGCGGCGGCCTGTGCGGGTGGGTGGGG
GGTTGCTCGCGCAGTTCCCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT42997.1\|2562871_2563357_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT43003.1\|2571376_2573017_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|277335
CP029788.1\|AWT43006.1\|2575320_2576220_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
CP029788.1\|AWT43005.1\|2573842_2574469_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
CP029788.1\|AWT42996.1\|2562451_2562856_+\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|378159
CP029788.1\|AWT42993.1\|2554678_2555104_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380090
CP029788.1\|AWT43007.1\|2576303_2576651_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT42995.1\|2561955_2562348_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214578
CP029788.1\|AWT43000.1\|2564725_2566771_-\|EmrB/QacA-family-drug-resistance-transporter	unknown	unknown	gnl\|CDD\|341045
CP029788.1\|AWT43002.1\|2570667_2571312_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377857
CP029788.1\|AWT43001.1\|2569668_2570250_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225030
CP029788.1\|AWT47566.1\|2577386_2577725_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT47565.1\|2574974_2575199_-\|DUF2277-domain-containing-protein	unknown	unknown	gnl\|CDD\|378364
CP029788.1\|AWT42999.1\|2564221_2564716_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029788.1\|AWT42998.1\|2563362_2564049_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT47563.1\|2555313_2556891_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT47564.1\|2561283_2561955_+\|methyltransferase	unknown	unknown	gnl\|CDD\|226607
CP029788.1\|AWT43008.1\|2576654_2577299_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
CP029788.1\|AWT43004.1\|2573117_2573600_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
CP029788.1\|AWT42994.1\|2556844_2558965_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379588

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT43003.1\|2571376_2573017_+\|alkaline-phosphatase	gnl\|CDD\|277335	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	8.04538e-30
CP029788.1\|AWT43006.1\|2575320_2576220_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	5.23536e-56
CP029788.1\|AWT43005.1\|2573842_2574469_+\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.14533e-15
CP029788.1\|AWT42996.1\|2562451_2562856_+\|DUF1992-domain-containing-protein	gnl\|CDD\|378159	pfam09350, DUF1992, Domain of unknown function (DUF1992). This family of proteins are functionally uncharacterized.	9.60065e-20
CP029788.1\|AWT42993.1\|2554678_2555104_+\|hypothetical-protein	gnl\|CDD\|380090	pfam18013, Phage_lysozyme2, Phage tail lysozyme. This domain has a lysozyme like fold. It is found in the tail protein of various phages probably giving them the ability to degrade the host cell wall peptidoglycan layer.	0.000141898
CP029788.1\|AWT42995.1\|2561955_2562348_-\|hypothetical-protein	gnl\|CDD\|214578	smart00240, FHA, Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.	0.00120895
CP029788.1\|AWT43000.1\|2564725_2566771_-\|EmrB/QacA-family-drug-resistance-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.46955e-81
CP029788.1\|AWT43002.1\|2570667_2571312_+\|hypothetical-protein	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	2.97537e-11
CP029788.1\|AWT43001.1\|2569668_2570250_-\|hypothetical-protein	gnl\|CDD\|225030	COG2119, COG2119, Predicted membrane protein [Function unknown].	6.50278e-26
CP029788.1\|AWT42999.1\|2564221_2564716_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.27446e-15
CP029788.1\|AWT47565.1\|2574974_2575199_-\|DUF2277-domain-containing-protein	gnl\|CDD\|378364	pfam10041, DUF2277, Uncharacterized conserved protein (DUF2277). Members of this family of hypothetical bacterial proteins have no known function.	6.1079e-25
CP029788.1\|AWT47564.1\|2561283_2561955_+\|methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	8.78591e-55
CP029788.1\|AWT43008.1\|2576654_2577299_-\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	7.80361e-50
CP029788.1\|AWT43004.1\|2573117_2573600_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	5.37209e-10
CP029788.1\|AWT42994.1\|2556844_2558965_-\|hypothetical-protein	gnl\|CDD\|379588	pfam14378, PAP2_3, PAP2 superfamily.	7.23384e-45

>CP029788.1|AWT43000.1|2564725_2566771_-|EmrB/QacA-family-drug-resistance-transporter
MAVEADTGPAAAASQQEHVPGNVLVSIGALLLGMLLAALDQTIVSTALPTIVSDLGGLEHLSWVVTAYMLASTAATPLWGKLGDQYGRKRLFQTAIVIFLIGSALCGMAQNMPQLIAFRALQGLGGGGLMVLSMAIVGDLVPPRERGRYQGLFGAVFGATSVLGPLLGGLFTEHLSWRWVFYVNLPVGVVALAVIAAVLHIPRKTTHHVIDYLGTLLIASVATCLVLVASLGGTTWAWDSPQIIGLAVLGVVLAVVFTVVERRAAEPVLPLKLFRIRTFTLSAVISFIVGFAMFGAMTYLPTFLQVVRGVTPTMSGVHMLPMVFGLLLSSTLSGQIVSRTGRWKVFPIAGTAVTAIGLLLLHQLDENSSTAEMSSYFFVFGLGLGLVMQVLVLIVQNAVSYEDLGVATSGATFFRSIGASFGVAIFGTVFASRLGDKLTDAFRGVRLPPGMSADALESDPRGISSLPPALRPAALHAYASSITDVFLYAAPVAALGFVLAWFLKEDRLRASVTAPDVTETLASNPVERSSYDEVCRALSVLGTREGRREVYRKITERAGYDLLPAASWLLLRIKKYGQVEPARLAEGGPVPLQVVLEAARQIEERRLARRDGVDLVLTDAGRATAARLAQAREESLAELLGDWWGTDRPTDLTQLVRLLNDELCGSRQERPQEARPPARLS
>CP029788.1|AWT42999.1|2564221_2564716_+|GNAT-family-N-acetyltransferase
MPTWTIAPEAPGSPAALALWRAYYTEVSDRWYLLHEGRRTDPGELEREIAAESGDVLAPPHGRLLVARYGGEPAGTAGVRLLDAATAELKRVFLLPALRGRGGAALLVDAAERAARELGAERIVLDTRSDLVEARALYARLGYTETEPHNDDPYAEHWFGKRLT
>CP029788.1|AWT42998.1|2563362_2564049_-|hypothetical-protein
MSTGVIIALIVIVAAVVLVAAALMLLRARRPHAGGNLKRRFGPEYDRTVARHDGDVKAAERELTERVQRHGALRERPLEPAERERYEARWAAAQERFVDAPREAVAEADRLLAEVAGARGFPDGGQYEEQLAALSVHHAGHVDGYRRVHRVARLGAGADGGAPGTEEMREAMLEARALFEDLLKASAQDTGRHRADRDEVRQTRDREAVPGRRGHLPWGLTHRHAKGS
>CP029788.1|AWT42997.1|2562871_2563357_-|hypothetical-protein
MSDATRPIRDPLAPPAEGTPDARGETAVGTTAHGTATGSRPTTATTPGTGTGTGTGTDAGRARPHGSETPLLAREESEELEQRLTQAVTRFVDGPRDAVAEADRVLEEIAARFTEAVTRRRRTLRTTWQNTDDDAGGTADTEQLRLALRDYRELAQRLLDG
>CP029788.1|AWT42996.1|2562451_2562856_+|DUF1992-domain-containing-protein
MSERKPPGVSFDSWTDKQIRDAAARGEFDRLPGAGKPLPSDVEADYDEQWWIKRKLAREGISVLPPTLALRKEAEDALVAAIAAPSERIARKIITDVNVKIRDMMFKPPPGPPLGMKPYDVEEVVRQWRERRAR
>CP029788.1|AWT42995.1|2561955_2562348_-|hypothetical-protein
MLELTMATVSGTDAGATAGMLMADAPSEPGAVLRVGRDKAVCRLVAPEDWLFVSRAHLEFVCGPDGTWQLTWLRGSQPDPSSEVRLVMGEYAQPLVYGGTVPLPRGGAGEVVIQDRTGPRSVNVGFYHEV
>CP029788.1|AWT47564.1|2561283_2561955_+|methyltransferase
MSSSQRWDDVDFYFSSHLAPDDDVLQAALRDSEAAQLPHVNVTAPQGKLLRLLAEMQGARTILEIGTLGGYSTIWLARALPADGRLISLEYSAKHAEIATRNIARAGLDKVVEVRVGPALESLPKLADENPPPFDLVFIDADKANNAHYVEWALRLTRAGSVIVVDNVVRGGRVADSDSTEPDIQGTRAAIELIAAHPRLSGTAIQTVGSKGYDGFALARVLA
>CP029788.1|AWT42994.1|2556844_2558965_-|hypothetical-protein
MVNARHSGQPGQAFGATAVGAAGARLRALRLALWLVAALLAARQVDAVLGSPRGERLTDLETWVGPEGVLHVKGSLYDSTRFTGTPFGGLVLKPLTRAAEQALGWGWTFGTLLLVVALGLIAARALPQPVSRRTSLLAAPVAVSLLMLSLPVRNTLYLGQTSIMPVLLVLAGCFVVRGERAVGLCVGVAAALQPTVLMFTPLLWFTGRRTAALSTGVTFAACTLAAWVAMPHDSAAYWVHHLAGAGLGGPADDLANQSLHGALLRLGLAGPAEIALFLLLGAAVAVLGVRRAVRFARDGQLLLAVAITGCAAVAVSPTAWQHQLLWLLLAVVGRVGGRASDRYVWPVAVILVMTLPATMMLPNKPLFQPLIENLALLAAVAAATAVPFLSRTSPYFRDPVPTEYAAAPVPARWRHVPLVPALRRVLTRPNLLFELLLIRITYSAYARIRLAAAGDSNSAGRLRAEHHGQQILDLERFLHLDVEHWANHAVVRTPWLEDFLSFYYESFHFGVPLAILAVLYWRRPVDYRWARSAIGIATVLALAGFWLYPLAPPRLMPGLGIVDTVNGPQDFTQPDYGTLTELTNQYAAMPSLHFGWSLWCGLVILVLAPKWWMKALGLLHPFFTVCAIVGTGNHWVLDAVGGAAVVGLGFGLTYLVQGPRASTAARPARPKPVADTDADAVTDTHADAGAEVSSPRPGRAGNRTPS
>CP029788.1|AWT47563.1|2555313_2556891_+|hypothetical-protein
MLRVLRLPRGRHRVPLLATLPVLPLYVLWWTVLATGGGDLAAQQAWAGFAARHGGSAYNLFWYGGMHTANYSLVSPYLMAALGVRTVTALSGLAATWAAAVLIGRAGVRRPLGPALLASLALWCDVASGRTTFALGVAFGLAGCVLLTGQRRTVLAAGYAALATMASPVAGLFLAVVGGGFLLVRDRGRALALLVPPAAVVGATTLLFPFTGEQLMPLARVWPPVLLGLAVTVLAPHGWRVARIGGAVYAAGTVLVYLLPSPIGTNVERFAELFAPAVLLAALLTVERTRRAARTLLVVALVFSVGWVGKKTADDLRVYTAVPAWAADTRPVVRALEGLGADRTRVEAVPARDHREAAALAPHVNLARGWNRQLDMERARLFYDGTFSAATYRAWLDRWAVGFVVLPLGRPDGYAEEEARLVREERPDWLEPVWQDAHWRVFRVRDAVPLVSAPGSVVRTSGADLRLRVSRPGAVTIRIAWSPWLRADGGCLSRDGEFTRLTVDAPGAYRISSEYGSLPGRGAGC
>CP029788.1|AWT42993.1|2554678_2555104_+|hypothetical-protein
MSVSRIVRRLAAPKKVLTTAAVAAATAGMALTAAPAHAAAASADSAAQAQAIAHKMIPDAAQYQAFSHIVEHESGWDVDATNSSSGAYGLVQALPGTKMASAGADWKTNAATQIKWGLDYMNSRYGSPVAAWNFWQANGWY
>CP029788.1|AWT43001.1|2569668_2570250_-|hypothetical-protein
MISLTVTALVFGVVFLAELPDKTALAGLVLGTRYRASYVFAGVAAAFALHVALAVAAGSVLTLLPQQLVHALTGVLFLGGAAMLLMKKDEDEEEVRRPENQSFLKVAGAGFMLILVAEFGDLTQIMTANLAARYDDPLSVGLGAVLALWAVAGLGIVGGKALMKRVPLALITKVAALLMLALGVWSLWEAVTG
>CP029788.1|AWT43002.1|2570667_2571312_+|hypothetical-protein
MPRFYARRRLSIAAAVTGLIASAAFFNAPGASAALPTPVSATTARSYLSQLTVATENRTGYSRDLFPHWITISGTCNTRETVLKRDGTNVVTDSSCAATSGSWYSPYDGATWTAASDLDIDHLVPLAEAWDSGASKWTTAQRQAFANDLTRPQLIAVTDDVNQAKGDQDPATWMPSRTTYRCTYVRAWVQVKYYYDLSVDSAEKTALTNYLANC
>CP029788.1|AWT43003.1|2571376_2573017_+|alkaline-phosphatase
MAGLRLGPLLRYTDGSSATVWVETSRPCTAEVRCADGAGGTARTFQVAGHHYALVPVSGLTAGTATAYEVLLDGNRVWPLPDSPLPPSVIHAPGADDVVRVAFGSCRWAAPPAGGTDPVGPDALDALATRIAADPGGERPDVLVLLGDQVYADETSEAVRRRIDARRGLSDPPGGEVADYEEYTWLYYESWLDPEVRWLLSTVPSCMIFDDHDVVDDWNTSAAWLADMRATDWWQERIVSGLMSYWVHQHLGNLSPAELDADPLYAAVRDTPDATDLLRAFATRADADPTSVRWSYRRDFGRVRLLMVDSRAARVLDEQRRAMLHPEEAAWLRAQALDAPGTCDHLLIGTSLPWLLPHLVHDVEAWNAVLCRGRKGARWARFGERLRRRADLEHWAAFPESFAALAGVIAEAGSVPDGPATVCVLSGDVHHAYAAEPSWPADSPAPAARVLQLTCSPVHNSVPLSIRLGFRFGWSAVARALGRRFARHAGCPPTAVTWRRTGGPWFGNQLMTLTLRGRAATLGLEQAGSDGTLRPVWLNVELASIN
>CP029788.1|AWT43004.1|2573117_2573600_+|DoxX-family-protein
MTGRLDSAQPYVLGLFRIVTGLLFACHGAASLFGVLGGAAGGNGGTIPAGTWPGWYAAVIQLVCGGLVLLGLGTRAAALLASGSMAYAYFDVHQSMALWPLQNGGEASAMFCWAFFLLIFTGSGAFGLDRVVAGRLGASRGGDAGAGADADADARASAVA
>CP029788.1|AWT43005.1|2573842_2574469_+|hypothetical-protein
MLESLGQVGALTASPWIYAVVAVSVLLDVFLPILPSGVLVIAAATAAAAGSAAGSGAARGDVPDVLFLILSAATASVVGDLVAYRLAWRGGPRLDRALARSRRLRSAQERLGAALARGGGALVVLARFAPAGRSVVSFTAGVLHRRARDFLPWSALAGLSWAAYSTALGYFGAHWLGTRWLATLVSLAALFAAGAGAGYWMRRRPAEA
>CP029788.1|AWT47565.1|2574974_2575199_-|DUF2277-domain-containing-protein
MCRSIKTLRPPALPEEATEEEIRAAALQYVRKVSGFRAPAAHNQEVFEQAVEAIAEATAELLGGLEVRGAAARR
>CP029788.1|AWT43006.1|2575320_2576220_+|2-dehydropantoate-2-reductase
MGKKNLTVAVLGPGGIGGLLAALLSRAGHRVICLAGEATAETLRTQGIRVRSGRFGDFTVPVEADGELREPVDAVLVAVKHTTLDAALTRVPPKALGDALVVPFLNGVEHPAYLRDRYPADQVAPAVIRVESTRVAPGVIEHGSPFAEIDMAGDTVPRGRLEALAEALSDAGPVARVLDDEAAALWAKMAFLAPFALLTTRYGVPIGEARTAYRDELTALVAEAAAVSGACGGPADPAGALARYDAFPARSKSSMLRDAEAGRPLELDAIGGALLRAAERHGVAVPVTSRLVAELGASS
>CP029788.1|AWT43007.1|2576303_2576651_+|hypothetical-protein
MATTYDFPSDLRAGQEELHQVRAELSALLKRLPWSVEPLDGFSDDAGWRKIERPASPGWTADEQAEVEKLRRREHELAVFVSTHRFWSEVAVEHRVEARTQLKHAHETPPEDEKG
>CP029788.1|AWT43008.1|2576654_2577299_-|DUF305-domain-containing-protein
MSNTRTRVRRVGLAALAVSAALTLAACGGGSGGHEEHAAPAPTASAATTAGAHNAQDVAFAQGMIPHHRQALDMAALAAGKASSAQVKDLASRIQKAQDPEIRTMSGWLEAWGEDVPQADGSSMPGMDHSAHTGGHSAMPGMMGDEDMEKLEKASGKAFDAMFLTMMIEHHQGAVQMATTEKAKGRYGPAKAMAGDIVTAQNAEIQEMRKLLGQ
>CP029788.1|AWT47566.1|2577386_2577725_-|hypothetical-protein
MLGLLAGLFAMHGLAPGGGLAGGHPQGHARHGVVAVSMDDECGHDGHGGGHARHADATCASGAVSGGPVLPALAVDPLAAHQAVEAPRSYAGDAPEGGRAPPSLSELQLLRI

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Crispr_ID: CP029788_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_4

3245629-3245711

Orphan

Consensus_repeat	Method
CCCACGCACCCCGCGGTCGACCTGCGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029788_4

>merge|CP029788|4|3245629-3245711|CRISPRCasFinder
CCCACGCACCCCGCGGTCGACCTGCGCAAAGCTTCCGCTCCCACCGACGACGCGCCCACGCACCCCGCGGTCGACCTGCGCAA

>CP029788|4|4|3245629-3245711|CRISPRCasFinder
CCCACGCACCCCGCGGTCGACCTGCGCAA	AGCTTCCGCTCCCACCGACGACGCG
CCCACGCACCCCGCGGTCGACCTGCGCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT43555.1\|3248766_3249246_+\|AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP029788.1\|AWT43552.1\|3243786_3245193_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|273050
CP029788.1\|AWT47614.1\|3252049_3253066_+\|glycine/betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270329
CP029788.1\|AWT43549.1\|3240447_3241200_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
CP029788.1\|AWT47611.1\|3240153_3240390_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349991
CP029788.1\|AWT43546.1\|3236370_3236964_+\|nicotinamidase	unknown	unknown	gnl\|CDD\|238493
CP029788.1\|AWT43557.1\|3253124_3253751_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|378968
CP029788.1\|AWT43551.1\|3243351_3243762_+\|SsgA-family-sporulation/cell-division-regulator	unknown	unknown	gnl\|CDD\|377399
CP029788.1\|AWT43547.1\|3236983_3237325_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT43550.1\|3241289_3243140_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377640
CP029788.1\|AWT43558.1\|3253828_3254017_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT43548.1\|3237446_3239798_-\|protease	unknown	unknown	gnl\|CDD\|368494
CP029788.1\|AWT43559.1\|3254030_3254822_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226011
CP029788.1\|AWT43554.1\|3247490_3248639_-\|4-hydroxyphenylpyruvate-dioxygenase	unknown	unknown	gnl\|CDD\|273528
CP029788.1\|AWT43545.1\|3234834_3236184_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
CP029788.1\|AWT43556.1\|3249266_3249914_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224095
CP029788.1\|AWT43553.1\|3246078_3247467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
CP029788.1\|AWT43544.1\|3234459_3234777_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
CP029788.1\|AWT47612.1\|3249990_3251199_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
CP029788.1\|AWT47613.1\|3251210_3252014_+\|permease	unknown	unknown	gnl\|CDD\|224095

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT43555.1\|3248766_3249246_+\|AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	5.33693e-27
CP029788.1\|AWT43554.1\|3247490_3248639_-\|4-hydroxyphenylpyruvate-dioxygenase	gnl\|CDD\|273528	TIGR01263, 4-hydroxyphenylpyruvate_dioxygenase, 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see . In some bacterial species, this enzyme has been studied as a hemolysin. [Energy metabolism, Amino acids and amines].	0
CP029788.1\|AWT47614.1\|3252049_3253066_+\|glycine/betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270329	cd13611, PBP2_YehZ, Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein YehZ of Clostridium sticklandii is predicted to be involved in uptake of compatible solutes such as choline, L-proline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. YehZ belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	6.81555e-153
CP029788.1\|AWT43549.1\|3240447_3241200_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	9.81351e-26
CP029788.1\|AWT47611.1\|3240153_3240390_+\|hypothetical-protein	gnl\|CDD\|349991	cd18547, ABC_6TM_Tm288_like, Six-transmembrane helical domain Tm288 of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins. This group represents the six-transmembrane helical domain (Tm288) of a heterodimeric ABC transporter Tm287/288 from Thermotoga maritima and similar proteins. This TMD possesses the ATP-binding cassette (ABC) exporter fold, which is characterized by 6 TM helices per subunit (domain), or a total of 12 TM helices for the complete transporter. The ABC exporters are found in both prokaryotes and eukaryotes, where they mediate the cellular secretion of toxic compounds, a various type of lipids and polypeptides. ABC transporters typically consist of two transmembrane domains (TMDs) and two nucleotide-binding domains (NBDs). The sequences and structures of the TMDs are quite varied between the different type of transporters, suggesting significant structural diversity of the translocated substrates, while NBDs are conserved among all ABC transporters. The two NBDs together bind and hydrolyze ATP, thereby providing the driving force for transport, while the TMDs participate in substrate recognition and translocation across the lipid membrane by alternating between inward- and outward-facing conformations. Moreover, some ABC genes are organized as half-transporters, which must form either homodimers or heterodimers to form a functional transporter. The ABC exporters play a role in multidrug resistance to antibiotics and anticancer agents, and mutations in these proteins have been shown to cause severe human diseases such as cystic fibrosis.	0.00162872
CP029788.1\|AWT43546.1\|3236370_3236964_+\|nicotinamidase	gnl\|CDD\|238493	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).	1.41916e-77
CP029788.1\|AWT43557.1\|3253124_3253751_+\|transcriptional-regulator	gnl\|CDD\|378968	pfam12840, HTH_20, Helix-turn-helix domain. This domain represents a DNA-binding Helix-turn-helix domain found in transcriptional regulatory proteins.	5.77923e-11
CP029788.1\|AWT43551.1\|3243351_3243762_+\|SsgA-family-sporulation/cell-division-regulator	gnl\|CDD\|377399	pfam04686, SsgA, Streptomyces sporulation and cell division protein, SsgA. The precise function of SsgA is unknown. It has been found to be essential for spore formation, and to stimulate cell division.	7.34258e-45
CP029788.1\|AWT43548.1\|3237446_3239798_-\|protease	gnl\|CDD\|368494	pfam05547, Peptidase_M6, Immune inhibitor A peptidase M6. The insect pathogenic Gram-positive Bacillus thuringiensis secretes immune inhibitor A, a metallopeptidase, which specifically cleaves host antibacterial proteins. A homolog of immune inhibitor A, PrtV, has been identified in the Gram-negative human pathogen Vibrio cholerae.	0
CP029788.1\|AWT43550.1\|3241289_3243140_-\|hypothetical-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	4.39171e-24
CP029788.1\|AWT43552.1\|3243786_3245193_-\|FAD-binding-oxidoreductase	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	5.83826e-149
CP029788.1\|AWT43559.1\|3254030_3254822_-\|hypothetical-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	7.42176e-34
CP029788.1\|AWT43545.1\|3234834_3236184_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
CP029788.1\|AWT43556.1\|3249266_3249914_+\|ABC-transporter-permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	6.00751e-52
CP029788.1\|AWT43553.1\|3246078_3247467_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	6.67879e-13
CP029788.1\|AWT43544.1\|3234459_3234777_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	3.81582e-42
CP029788.1\|AWT47612.1\|3249990_3251199_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	6.74099e-146
CP029788.1\|AWT47613.1\|3251210_3252014_+\|permease	gnl\|CDD\|224095	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism].	3.44414e-55

>CP029788.1|AWT43552.1|3243786_3245193_-|FAD-binding-oxidoreductase
MIMSRIEAPRDERTGNLLDRLLAGLPAEAVLTDPDVTASYAHDMASFCPAGSPAVVVLPRTVEQVQHVLRTATELRVPVVPQGARTGLSGGANATDGCIVLSLTKMDRILEINPVDRVAVVEPGVVNAALSRAVEEHGLYYPPDPSSWEMCTIGGNIGTASGGLCCVKYGVTAEYVLGLDVVLADGRLLTTGRRTAKGVAGYDLTRLFVGSEGSLGIVVRAVLALRPKPPRQLVLAAEFPSAAAACDAVCRIMAGGHVPSLLELMDRTTVKAVNDLAHMGLPETTEALLLAAFDTPDPAADLAAVGALCEAAGATQVVPAEDTAESELLLQARRLSLTALEAVKGTTMIDDVCVPRSRLGDMLDGVERIAAKYGLTIGVCAHAGDGNTHPTVCFDAQDPDESRRARESFDEIMALGLELGGTITGEHGVGVLKKEWLAREIGPVGVEMQRQIKQVFDPLGILNPGKLF
>CP029788.1|AWT43551.1|3243351_3243762_+|SsgA-family-sporulation/cell-division-regulator
MHTVVERELELRLILSPERGIPVPARLTYRTDDPYAVHITFHINSEYPVNWTFARELLVEGVFRPCGHGDVRVWPTKVDGRSVVLMALSSPDGDALLEAPAAQVSAWLERTLRVVPPGTEGEQLGIDDALDQLLAQ
>CP029788.1|AWT43550.1|3241289_3243140_-|hypothetical-protein
MSAPTPAPGDDRPREGYYPDPSIPGYVRYWNGSAWVPGTSRPAPTDGEPLAPPPGVRPAQPASVEETGPHFFDEDPQPGPAADPQEPASAWTADRARQSGFGTDQDRRVSWGTPGAAADPRVPTDPARTPAPGSGPAQPPVPGRPAVPGQAAGPAQSPVPGQATGPAQPPTPGQASGVAPANVPGQGPGAGQSFGPAQASGAGRSPVPAQGPGAAQGPVPGQSFGPAQASGGGAGRAEAGDAESSPGTVVFRRPTAADAPQGDQDAGTMLFRPVPSQGQGDGRGQAGRGTPGAAPDWPEAGSDFAAQGPVHAGAAGPAAAAAPGPGFAAGKAAADRAAAAQGPAAATPGTPAATPGPTASQPNPAAPGPVGPAAPATPGVPHQAAAAPQPVTAPSAPASPVSNPLSTPVTSGPGGGQASWAQQVHQLAGAGEAEQPVAPWKPPVEDIFQAAARRQASARPAGLGRRLAARLVDTLVVAAVTSAAAVPLGLKTVDHVNEKIDAAKLTGRTVTVWIVDGTTSVYLGVILAVLLLAGVLCEALPTAKWGRTLGKKLFRLEVRDIEAHEPPSFGAALRRWLVYSIPGLLGIGVVGVVWGLFDRPWRQCWHDKAAHTFVAG
>CP029788.1|AWT43549.1|3240447_3241200_-|RDD-family-protein
MSTEPPPGSGQPPEDDPFRKQPPPGPGQGPGPGSPYDTPHGGQPPPPHGTGGPPGGGPYGGGGPYGGGGPYGGDPYGGPGGPYGGPGGPYGGPGGPADPLAGMPPLADSGKRTLARIIDMILVGVVVWLLTLGFNVDEYTVDGDRIEVGKSLGQSAIAAVLYVAYDTFLIARTGQTVGKKLLGMRVANLDNGANPSVQNALLRALVLWIPFAFCCACVWTAISGGWSFFDKPYKQGLHDKAAKSVVVSTG
>CP029788.1|AWT47611.1|3240153_3240390_+|hypothetical-protein
MPRPTVAQLVYGACTVVFSTLAMLLLSQTGSGPAIAVIAVAALALGVLVAMTVPVPKASAPAAQPASAERSEREPVAP
>CP029788.1|AWT43548.1|3237446_3239798_-|protease
MTSRSWTFRAAAISVALAAASAGFTTFAVAEAAPNAGATTVDRHDPAPEKQHKHDLDGPLSKTQEAQRQEALDQVISGQAQVKEKNGSKVVQLKSKKGDSKFVELGREKTDKIFTILVEFGDKTDPKFGGTPGPLHNTIAAPDRTKDNSTAWQADYDRQHFQDLYFGTGKNTESVKKYYEKQSSGRYSVDGEVSDWVKVPYNEARYGNNACGSTNCPSVWNVVSDGLSAWVAQQKAAGRTDAQIKADVAQFDQWDRYDYDADGNFNEPDGYIDHFQIVHAGEDESAGGGAQGTDAIWAHRWYAFGTDAGATGPANNRLGGAQIGDTGIWVGDYTIQPENGGLGVYAHEYGHDLGLPDEYDTAGGENSTGFWTLMSSGSWLGRGKDAIGDLPGDMNAWDKLQLGWLNYDTAKAGKQSTHKLGVAEYNTWDKQALVVNLPDKAVTTEVVKPAEGATQWWSGSGDDLKNTLTRSVDLTGKTSAALTLDGWYDIEANYDYLYTEVSTDGGANWTALDGTVDGQPIPRDGSDKPALTGSSETYKKLSYSLDAYAGKKIDLRFRYQTDGGVALKGFAADEITVTADGAALFSDNAETLDPAWTKVGFDRIGASFTKDYAQYYIAENRQYVSYDKTLKTGPYNFGFSTTRPDWVEHYAYQNGLLIWKWDTSQADNNTGTHPGAGLILPIDSHPEALRWKDGTLMRGRIQSYDAPFSLYPTDGMTLHKADVATRIWPSAGVSVFDDHASTYYDASNPASGVKVTDTNTRIRIVKEAKDGSTINLQVGPAVK
>CP029788.1|AWT43547.1|3236983_3237325_-|hypothetical-protein
MAAGGFCKLPNGSVVVALNLPSPAADGPAGVRVLVHAQNRARALTRLRNLGLRSVYLRGNAAPPTPDEITAVLHHPDGLIWRTAPGSAVGGPELMTELWHPIRALLRRPAAPA
>CP029788.1|AWT43546.1|3236370_3236964_+|nicotinamidase
MRRALIVVDVQNDFCEGGSLAVAGGADVAAAITELIGQATPAYRHVVATRDHHIAPGGHFADNPDYVRSWPAHCVAGTEGVGFHPNFAPVVASGAIDAVFDKGAYAAAYSGFEGADENGTGLADWLREREVDEVDVVGIATDHCVRATALDAAKEGFRAHVLLDLTAGVAQETTEKAIEEMREAGVELTGKPVVLRG
>CP029788.1|AWT43545.1|3234834_3236184_+|nicotinate-phosphoribosyltransferase
MNTADLGLPVDVPSTALFTDHYELTMLQAALKAGTAERRSVFEVFTRRLPNGRRYGVVAGTGRVLDAVENFRFDAGVLGFLRERRIVDDATLDWLAGYRFSGDIWGYPEGEVYFPGSPILRVEGSFAECVLLETVILSILNHDSAIAAAASRMASAAGDRPLIEMGARRTHELSAVAASRAAYVGGFASTSDLAAGFRYNIPTVGTSAHAFTLLHDCERDAFRAQVESMGRGTTLLVDTYDVTEAVRTAVEVAGPELGAVRIDSGDLLLVAHRVRQQLDELGARDTRIIVTSDLDEYAIASLAAAPVDAYGVGTQLVTGSGHPTASMVYKLVARAESADPKAPLKPVAKKSSGGKTSVGGRKWAARRLDEDGVAEAEVVGTGPVPAELADRQLLVELVKGGEIVGREPLDAARERHAATRAGLPLSAIQLSRGEPVLPTEYVHGRSGSQ
>CP029788.1|AWT43544.1|3234459_3234777_-|ATP-dependent-Clp-protease-adapter-ClpS
MVTVTAAAPIEIEKTESAEEVSAVPEPDVPWVTIVHNDPVNLMSYVTYVFQTYFGYSKDKATKLMLDVHHKGRAVVSSGTREEMERDVQAMHGYGLWATLQQDRK
>CP029788.1|AWT43553.1|3246078_3247467_+|hypothetical-protein
MPRSRSRRRWALIASLAAGGLVVGGVLVGLPAEAPVRSAPVPAPGPQARAALAAGAPAALPDLTVLIGEQEAYLRAHPKDARSWALLGTAYVEQGRRTAEAALYPKAESALRRSLKSTPKRNPDALDGLAALANARRDFRAAKGYAEAALKERPKHWRTYPLLIEALTGLGDHKGAGRALDRLTELHSGPAVRARAAAVYRDRGWREDAQAALADAAAAAGAPAERAAYLQGAGELAWERGDLQDALRHFRAAARTDPDLRAAQAGQARVLAALGRSSEALSAYRVALTRQPEPQYALELGELYESLGLRDAARVEYDLLRALVRQHAAGGVDGNLTLGRFEADHGDPATAVRLLRAEWRRQPGIEVADALGWALHRAGADKEALRFAAIATDKAHGGGVRSAPYAYHRGMIERALKQYGPARRHLQEALRINPYFSVVHAPAARAALRALGEPSEDGPPER
>CP029788.1|AWT43554.1|3247490_3248639_-|4-hydroxyphenylpyruvate-dioxygenase
MTQTTHHTPDTTARQDDPFPVKGMDAVVFAVGNAKQAAHYYSTAFGMKLVAYSGPENGSRETASYVLENGSARFVLTSVIKPATTWGHFLAQHVAEHGDGVIDLAIEVPDARRAYAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGETRHTLVDRSGYDGPYLPGYVAADPIVEPPAQRTFQAVDHCVGNVELGRMNEWVEFYNKVMGFTNMKEFVGDDIATEYSALMSKVVADGTLKVKFPINEPAVAKKKSQIDEYLEFYGGAGVQHIALNTNDIVATVRAMRAAGVQFLDTPDSYYDTLGEWVGDTRVPIETLRELKILADRDEDGYLLQIFTKPVQDKPTVFFELIERHGSMGFGKGNFKALFEAIEREQAKRGNL
>CP029788.1|AWT43555.1|3248766_3249246_+|AsnC-family-transcriptional-regulator
MAIDHLDGRIIVLLAREPRIGVLEMSRRLGVARGTVQARLDRLQSNGVIRGFGPEVDPAALGYPVTAFATLQIRQGQGADVRAHLATVPEVLELHTTTGTGDMLCRLVARSNADLQRVIDRVVGFDGIVRASTAIVMENPVPLRIIPLVEQAAEDRDRT
>CP029788.1|AWT43556.1|3249266_3249914_+|ABC-transporter-permease
MDFWEYLGSRHQQLLTDAWQHASAVFQCMVLATVLGVLIGVVTYRSGWAGNLATTTTSTILTIPSLAMIGLLVPVVGLGVPPTVIALTLYGLLPIVRNSIVGLRGVDPTLVDAARGIGMSGPMRLVRVELPLAWPPILTGIRVSTQMLMGIAAIAAYASGPGLGNEIFRGLASLGSKNALNQVLAGTLGIIILALLFDAAYVLIGRLTIPRGIRV
>CP029788.1|AWT47612.1|3249990_3251199_+|polyamine-ABC-transporter-ATP-binding-protein
MELENLTKRYPGSPQPAVDNVSMEIKAGETVIFVGPSGCGKSTTLKMINRLIEPSGGRIRIGGEDVTDIDPVKLRRKVGYAIQSAGLFPHMTVAQNIALVPKMIGWSKARIRSRVEELLDLVGLDPGEFHGRYPRQLSGGQQQRVGVARALAADPPVLLMDEPFGAVDPITRDHLQDELIRLQHELHKTIVFVTHDFDEAIKLGDRIAVLRERSHIAQFDTPEAILTNPADDFVSGFVGAGAALKRLNLTRVRDVEITDYPTVTVDTPLQEIFLLLRSSGTNEILLLDRRRRPYKWLRRGDLMRARGSLARAGTLVHDTVTRDATLRDALEAVLTDNAGRVAVTGRRGEYTGVVDMETLMNSVHELLEADRLDAMEHQHELAEIRAAQTHAEQEGEGGGPKA
>CP029788.1|AWT47613.1|3251210_3252014_+|permease
MVPEAEDEERHERQAPRPASRRPRIGWRKLTFLPALLVAVLLATWLWFAQADLDPVSENALSNGQVSKALWQHVQLTVISTFFVLVIAIPLGILLTRRAFRKATPVAMALANMGQATPAIGLLALLVIWLGIGRRAALIGIIAYAVLPVLSNTIAGLKANDPTLLEAARGIGMSPLGVLARVELPLAVPLILAGVRTALVLNVGTATLATFGGGGGLGVLITAGITNQRMPVLVLGSILTVALALLVDWLASLAELLLRPRGLEVGT
>CP029788.1|AWT47614.1|3252049_3253066_+|glycine/betaine-ABC-transporter-substrate-binding-protein
MRRAFGHVRQACGHVRRADRRVRRALGLGLAGALVAGCGLTSGSPMVDDVEPGSIGKGRPLEGAHLTVTSKSFTESLIMGAMMGIALQAAGADVLDRTGIQGSVGGREAIKSGDADAMYEYTGTAWITYQGNGKPIADPHKQWEAVRAADVDNGVAWLPPAALNNTYALAMNEANYKKYGTKTLSDVAALAERDPGAVTLCVEGEFANRADGLPGMEKAYGMDVPAKNVTQMDTGIIYTQTAKGNCTFGEVFTTDGRIRSMHLVVMKDDRKFFPNYNAAPVINADTLKQWPAMAEVLDPVTKKLTNDVAQELNAKVDVDGEDPHQVALDWMEKEGFVK
>CP029788.1|AWT43557.1|3253124_3253751_+|transcriptional-regulator
MQRKLCIDTFVRVTEPAPAPRKLRHLDPRSLRGLAHPLRMQLLDALRRSGPATASRLAERLGESSGATSYHLRQLAAHGFVEDAPGHGKGRERWWRAVDQGLVFDSDDFEGTGPEVRGLAETFLHEIAATHARELSAWLGTRERWGKDWSRSSDMSDATLRLTPELATELVGKMRALIEDYRGRVPDQDTPGSEQVRVHTHLFPVETD
>CP029788.1|AWT43558.1|3253828_3254017_+|hypothetical-protein
MRIETHLAREHAADLRAAADAHRLARQAAGHQRRLRTRLGWTLVDVGLRLAAPKGADVALAV
>CP029788.1|AWT43559.1|3254030_3254822_-|hypothetical-protein
MLSRLTRPQALAVCGLPVVALIATAAFAPLPFSLAQPGLTADVLGENKGTPVITVSGAPTRQTRGELRMVTIEATPPGARVTLGDVLDGWFATDRAVMPHDSVYPGGGSVKDIERHNTEEMERSQDDATAAALGYLHLSPKDVKVDLTLADVGGPSAGLLFTLGIIDKLDGDGSGGDLTGGRTIAGTGTIDPDGKVGAVGGVALKTQAARRDGATVFLVPKAECGDAKAELPKGLRLVPVTTLKSAVDALVALEKGKGEVPSC

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Crispr_ID: CP029788_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_5

3311126-3311269

Orphan

Consensus_repeat	Method
AGCCCCCGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029788_5

>merge|CP029788|5|3311126-3311269|CRISPRCasFinder
AGCCCCCGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACCATTCAACCGACCGAGACGGGTGGGCGGGTGGGCAAGCGGGGGTGCAGGGGGCGGAGCCCCTGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC

>CP029788|5|5|3311126-3311269|CRISPRCasFinder
AGCCCCCGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC	ATTCAACCGACCGAGACGGGTGGGCGGGTGGGCAAGCGGGGGTGCAGGGGGCGG
AGCCCCTGCCGGGGTCCGGGGCGGAGCCCCGGGGCGAGGGCCACC

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT43595.1\|3304667_3305147_-\|SsrA-binding-protein	unknown	unknown	gnl\|CDD\|376590
CP029788.1\|AWT43594.1\|3302900_3304001_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119349
CP029788.1\|AWT43601.1\|3309802_3310909_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP029788.1\|AWT43608.1\|3323730_3325332_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378569
CP029788.1\|AWT43597.1\|3306440_3307358_-\|cell-division-protein-FtsX	unknown	unknown	gnl\|CDD\|225088
CP029788.1\|AWT43604.1\|3318678_3320061_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
CP029788.1\|AWT43592.1\|3301194_3301878_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380311
CP029788.1\|AWT43598.1\|3307390_3308080_-\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
CP029788.1\|AWT43600.1\|3308676_3309519_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT43607.1\|3322481_3323549_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366154
CP029788.1\|AWT43606.1\|3321417_3322335_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP029788.1\|AWT43603.1\|3312720_3314385_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
CP029788.1\|AWT43610.1\|3325845_3326391_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP029788.1\|AWT43593.1\|3301901_3302804_-\|DUF4232-domain-containing-protein	unknown	unknown	gnl\|CDD\|379419
CP029788.1\|AWT43609.1\|3325335_3325749_-\|Ohr-subfamily-peroxiredoxin	unknown	unknown	gnl\|CDD\|274649
CP029788.1\|AWT43596.1\|3305202_3306372_-\|peptidase-S41	unknown	unknown	gnl\|CDD\|223864
CP029788.1\|AWT43602.1\|3311332_3312604_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
CP029788.1\|AWT43599.1\|3308380_3308572_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT43605.1\|3320137_3321421_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
CP029788.1\|AWT47621.1\|3314740_3318466_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366133

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT43595.1\|3304667_3305147_-\|SsrA-binding-protein	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	3.15864e-86
CP029788.1\|AWT43608.1\|3323730_3325332_+\|hypothetical-protein	gnl\|CDD\|378569	pfam11143, DUF2919, Protein of unknown function (DUF2919). This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.	0.000501499
CP029788.1\|AWT43601.1\|3309802_3310909_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP029788.1\|AWT43597.1\|3306440_3307358_-\|cell-division-protein-FtsX	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	5.08231e-57
CP029788.1\|AWT43604.1\|3318678_3320061_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.56663e-30
CP029788.1\|AWT43609.1\|3325335_3325749_-\|Ohr-subfamily-peroxiredoxin	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.69052e-70
CP029788.1\|AWT43594.1\|3302900_3304001_-\|hypothetical-protein	gnl\|CDD\|119349	cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model.	4.9975e-07
CP029788.1\|AWT43598.1\|3307390_3308080_-\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	8.92988e-125
CP029788.1\|AWT43607.1\|3322481_3323549_+\|hypothetical-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.77263e-33
CP029788.1\|AWT43606.1\|3321417_3322335_+\|sugar-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.34139e-78
CP029788.1\|AWT43603.1\|3312720_3314385_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.80119e-105
CP029788.1\|AWT43593.1\|3301901_3302804_-\|DUF4232-domain-containing-protein	gnl\|CDD\|379419	pfam14016, DUF4232, Protein of unknown function (DUF4232). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 177 and 242 amino acids in length. Many members of this family are lipoproteins.	1.4549e-15
CP029788.1\|AWT43592.1\|3301194_3301878_+\|nitroreductase	gnl\|CDD\|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	1.28651e-19
CP029788.1\|AWT43596.1\|3305202_3306372_-\|peptidase-S41	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	3.44375e-65
CP029788.1\|AWT43602.1\|3311332_3312604_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	3.96207e-84
CP029788.1\|AWT43605.1\|3320137_3321421_+\|ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	5.36644e-40
CP029788.1\|AWT43610.1\|3325845_3326391_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.79423e-23
CP029788.1\|AWT47621.1\|3314740_3318466_+\|hypothetical-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	2.48874e-21

>CP029788.1|AWT43601.1|3309802_3310909_-|peptide-chain-release-factor-2
MAVVDVSEELKSLSSTMESIEAVLDLDQLRADIAVLEEQAAAPSLWDNPDEAQKITSKLSHLQAEVRKAEALRSRIDDLAVLFEMAEEEDDPDTRAEAETELAAVKKALDEMEVRTLLSGEYDSREALVNIRAEAGGVDAADFAEKLQRMYLRWAEGRGYKTELIETSYAEEAGIKSTTFAVHAPYAYGTLSVEQGTHRLVRISPFDNQGRRQTSFAGVEVLPVVEQSDHVEIDESELRIDVYRSSGPGGQGVNTTDSAVRITHLPTGIVVSCQNERSQLQNKATAMNVLQAKLLERRRQEEQAKMDALKGDGGNSWGNQMRSYVLHPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEAGIRWRKQQEK
>CP029788.1|AWT43600.1|3308676_3309519_-|hypothetical-protein
MTKKTRVRVARIAAAAVIAAGASLTAAGAASALEINIGVDLDGTDSGGSTEGTSSGSTEGASEGASEGASVGVSEGASEGTSTGTSEGTSTGTSEGTSTGTSEGTTEGGLIIGGTSEGTSEGTSTGTSEGTSTGTSTGASEGTSTGTSAGTSAGTTDGGTGNNGGSGNNGGNGNGNGGGNGNGGGNASTGGSGGNDNTTPDGGNDNAAQEAGSSALTDTGSATSSTGGSAASAQGDGKELAETGAGQTTFLVIGAATMIAGGVGFRILPRLVGGRGGAAA
>CP029788.1|AWT43599.1|3308380_3308572_+|hypothetical-protein
MTYDRLVCASCAAPVSEGRCPVCRANRERLQQESFLGGLNPMALIALLAVLVAAVALLAHQTV
>CP029788.1|AWT43598.1|3307390_3308080_-|cell-division-ATP-binding-protein-FtsE
MIRFDNVSKVYPKQSRPALRDVSLEVEKGEFVFLVGSSGSGKSTFLRLILREERASHGQVHVLGKDLARLSNWKVPHMRRQLGTVFQDFRLLPNKTVAENVAFAQEVIGKSRGEIRKSVPQVLDLVGLGGKEDRMPGELSGGEQQRVAIARAFVNRPKLLIADEPTGNLDPQTSVGIMKLLDRINRTGTTVVMATHDQNIVDQMRKRVIELEKGRLVRDQARGVYGYQH
>CP029788.1|AWT43597.1|3306440_3307358_-|cell-division-protein-FtsX
MRAQFVLSEIGVGLRRNLTMTFAVIVSVALSLALFGGSLLMSDQVSTMKGYWYDKVNVSVFLCNKSDAESDPNCAKGAVTQDQKNQILTDLKKMTVVQSVTYESQDEAYKHYKEQFGDSPLAASLTPDQMQESYRIKLKDPEKYQVIATAFDGRDGVQSVQDQKGILDNLFELLNGMNWAARAVMALMLVVALMLIVNTVRVSAFSRRRETGIMRLVGASGFYIQAPFIAEAAVAGLIGGTVACGFLLVARYFIIDHGLALSEKLNLINFIGWDAVLTKLPLILATSLLMPALAAFFALRKYLKV
>CP029788.1|AWT43596.1|3305202_3306372_-|peptidase-S41
MSGRDLFCQPRRTGRGAALTLVFASVLVAGAATGSLPGTGRTEDARAARSAAPVSRPEQVARAAEEAMADGKSPMEAAERAVSRSGDRWAAVYSRGEYEEFQDALDGRYTGVGLWARRERDGRIEVTKVAAGSPAAEAGIRAGDRLRSVDGRRVDGRPVTEVVSLLRGDATGASAGTTVTLGLERGTRAWSLTLRRARLSTDSVTVRRLAGGVTVIRIASFTKGVGDTVRTAVRQAPSGAGVILDLRGNSGGLVAEAVTTASAFLDGGLVATYDVDGEQRALHAEPGGDTTRPLVAVVDGGTMSAAELLTGALKDRGRAVVVGSRTFGKGSVQMPSRLPDGSVAELTVGHYRTPSGRGVDGTGVTPDLEADAHAVQRARTILDGLGDAS
>CP029788.1|AWT43595.1|3304667_3305147_-|SsrA-binding-protein
MAKEKGRKLIAQNKKARHDYLILDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDGHEAWLYNVHVPEYSQGTWTNHSARRKRKLLLHRAEIEKLEAKAQETGHTIVPLALYFKDGRAKVEIALARGKKEYDKRQTLREKQDRREAERVMSAVRRRQRA
>CP029788.1|AWT43594.1|3302900_3304001_-|hypothetical-protein
MAGARHRSLAVLLGLLGALLVPTAAPPASAAAAATAPQIYGAWHCSNDACTWGTVRTAAEFDSQNHWLIDRGDGRPSVNLVVLSFVEPLKLLHGTTDATTVNGVPKGMTREIVQYFTAHGIRVMLSIGGITYTDAWNTALAENATLLGQRAAALASSLGVGIEIDYEENTAPDLTGLQAFIDAYRAAHPYDATGADPTARLTLDTAAGDRWLIALNRKATADWLRTDRPVLDYANAMVPARQPSTSGAIANWQEHVDGKPAYSPPVPPLAPAKFTGAVYISDQSKSLPECTDFANSLQKSTGSYTQTVAPNGVGVSSGMLGYMFWAAERPSTRGSGTTPPNTCEGGVGAGATAYGIPVPMPALRQS
>CP029788.1|AWT43593.1|3301901_3302804_-|DUF4232-domain-containing-protein
MRTFPLAALAGAALLLAACGTQTPAARGDGDRRCPSASPLPPGAAGLSEGGVRITSFAAAAAAGGGCPASEAAATYEVTNDSGTPMTYTVALGFRSASGGAVDVVTQTVAGVRPGQTVRRTVRPNRLPSAAPAVTGAEISKVRSVPAAEAPSQGGPCPRSGVRVYADQGDAAMGLRVVGLHLENCSTGVYRLDGYPELQLLDEKHAPVTGVRVQHGGAGISSGTGADAPPVPLALKPGEAARATLTWRNTTGFGDPVNAPYVRVHARPGAAPVTVTPELDLGTTGRLGVGAWQRADAGTP
>CP029788.1|AWT43592.1|3301194_3301878_+|nitroreductase
MTLDLTPDQLLSTTRAVRKRLDFDRPVPRSLIEECVDLATQAPTGRNRQRWHFVVVTEPAQRRAVADIFLRALPLATGHPLTEADVWRMNYHRDSTDRVFDGLRHLATHIHRVPAFVIPGVEGRTDHAPVSVQAGVWGSILPAVWSFMLAARARGLGTTWTTAQGPLERELAEVLGVPYDEVMLAAFVPLAYTLGTDFKPARRIPREHVLHWDRWSRGEHPSAEPPR
>CP029788.1|AWT43602.1|3311332_3312604_-|serine/threonine-protein-kinase
MARKIGSRYTAHQILGRGSAGTVWLGEGPDGPVAIKLLREDLASDEELVGRFVQERTALLGLEHPNVVSVRDLVVDGNDLALVMDLVRGTDLRTRLERERRLAPEAAVAIVADVAEGLAAAHAAGVVHRDVKPENVLLDMQGPLGPGGAHPALLTDFGVAKLIDTPKRTRATKIIGTPDYLAPEIVEGLPPRAAVDIYALATVLYELLAGFTPFGGGHPGAVLRRHVTETVVPLPGIPDELWQLLVQCLAKAPASRLRASELAARLREQLPTLAGMPPLDVDEPDAEADGEDGEPDDFRADAGPRGLSGDTADISPSGGRVRRGAVPLVPGAKPDSNRDTHTSMRVPGPDELAGGAHGTARAPRAAGAPRPGSARNRAAARRRRVTLGVAGVVLAAAVGVGAWVATSSDDAPPPATPTAPTSP
>CP029788.1|AWT43603.1|3312720_3314385_-|serine/threonine-protein-kinase
MRPVGSKYLLEEPLGRGATGTVWRARQRETAGAEAAVAGQPGETVAIKVLKEELANDADVVMRFLRERSVLLRLTHPNIVRVRDLVVEGDLLALVMDLVDGPDLHRYLRENGPFTPVAAALLTAQIADALAASHADGVVHRDLKPANVLLKQDGGQMHPMLTDFGIARLADSPGLTRTHEFVGTPAYVAPESAEGRPQTSAVDIYGAGILLYELVTGRPPFGGGSALEVLHQHLSAEPRRPSTVPDPLWTVIERCLRKNPDQRPSAENLARALRVVAEGVGVHANAAQIAAAENVGALLAPDPAPAPVPGSADPTQVLPQGQAGAYDPNAATSVLPHTGGPVPAGAADPTAVLPHTGAADPTAVMPPVPPGGQQPEQPHPWQTQLRAARDRNEQTQVHQYLDPGEDPLRRRPQRQVARPQQPQQPQRPAQQQRPPQRYAAQQPQQYAPPPQQPQRYAAPQPHQPQQPPQQQRPAREPRAPRQRSANPMKIPGLGCLKGCLFMVVVLFVAGWLVWELTPLQDWIGTGKSYWQQLSDWFDTVTGWIGDLGSGSSSQ
>CP029788.1|AWT47621.1|3314740_3318466_+|hypothetical-protein
MQIRLTVVDPLAPAGARGRAASCDVLVTAPAGTALAAVASGLAAAVQAGDGPVVLYAGAERLDAQRCTLGEPPLTDGAVLSLGAPADPEPHPELDDAPAQLHVVAGPDAGGVHLLHGGEVRVGRSADADVPLDDPDVSRLHCAVTLSPDGRVTVADLGSTNGTVLDGTRVDERPVRFGPGSLLRIGESALRMAPAGGPGARVPTTPDGEGHVRVPCGTETAEALPARVDGPPAPSAPTGQANGGVTWSGSTAPGARPSGGPAAHPTVPGQAGAPGIEHRPGAADGTAPGHRPAGPDGTAADRTASGHRADGTAPDGTASGLRPAAAPDRAASGLPGAAPTPGTGGTGLPTHGAGLDVRAADGNGTAGDGRGAPFAPGTGMGTGTDGRDARAAGRDAGTFAQDGRTDGRGTPRGADVPQGTGRRRGLSAWARRLTGGRAAAEAVVPEVYDEERTGAAPAEPVPSGVPETWPDPAALLLTALGPGPRLWERGPGHPEALTVRLGTADRAAPDGSGLLPAVPVTAGLREAGALGLAGPRPRLSGLARAVVAQLAALHSPDTLEIVLISVDRARSLEERTAEWSWLGWLPHVRPGHGQDCRLLLAYDREQAAARTDELLRRLADQDAERSTEAARLGAAHPVNGSAAPRAGRPTDTPARRPTEAHPVDGWITGPRETHATPGLGHPPDPQTTPGGTAAPTTPRRPSWARPDDGPGDGSGGSHGVAGPGHPGPYTVVVVDGDPGGPGLREAVARLAVEGPRAGIHVVCLAETDPASPASPVAQTFRAACEASPTFADCGAVALLSGDVATALRLLRVARREAAPVGHGTLATVDAVSPAWAERFARALAPLRPDGPAERHARVSAPLPQAARLLEELGLARATPASLMARWADAADDTDALGGRARAVLGAGPRGPVGVDLVADGPHLLIEGPHGSGRTELLRAVVASLAAAERPDRLGIVLMDGRDRVGGGAGDGLRVCTDVPHVTTHLIANDPVRMREFAQSLSAELKRRAELLGRSDFAEWHRHREVSGRIVAQRTPTAAPGAGHGSGDIEAPPSSTIRLRPSAARRPAETAPPLPRLVVVVDDLDALVSPALGSPGRPAAGSVMRALEAVARDGERLGVHLVAAAGPGGRTAESEPARRAALRVALDAPGSGPDDPAPGRGRLTGADGRTTPFQAGRVTGRIPRTATLRPTVVPLEWHRMGDPPTRRPVRELGNGPTDLALLASALERAAREVSAAQVPSLL
>CP029788.1|AWT43604.1|3318678_3320061_+|sugar-ABC-transporter-substrate-binding-protein
MRSTSSTHRTRTSMRAAAALAAGALALSLSACGGDDNDGGGSGGSTKGTESGGALALPKLDGTTLEVAAVWTGDEQKNFKQVLAEFSKRTGAKITFVPAQDPIINFLGSKVAGGQPPDVAMLPQPGAIKQAVDKGWAKPLNSDVQSELAKNYSQGWQDIGKVNGKQYGAYYKAANKSLIWYNAKVFENAGASEPKTWKDLLNTAQTVYDSGVTPFSVAGADGWPLTDWFENVYLSQAGPEKYDQLAKHQIKWTDPSVKDALTTLAQIWGKKDWVAGGSKGALQTSFTDSVEQTFTGGDQPKSAMVYEGDFAQVNIQQTKAKVGTDAKVFPFPAVGDTAPVVTGGDAAVILKDSKGAQALVKWLASPEAATIQAKLGGYLSPNKNVPNDAYPNAVQQKIAKALIDSGDDFRFDMSDQAPQSFGGTPGKGEWKDLQDFLKNPTDVAGAQRKLEADAAAAYGS
>CP029788.1|AWT43605.1|3320137_3321421_+|ABC-transporter-permease
MTGTRRTVAALFLLPALVLLGALVVYPIGYSVIRSFYDQSGDSFAGVDNYKALFTDEGIRTALKNNIIWVVFAPTIATALGLVFAVLTERVRWGTAFKLVVFMPMAISMLAAGIIFRLVYDQDPDKGVANAVWVGVHDTFAEASAFPKAHPGRESPLEPAKGGGFVTKAPVHTGQAVTLPLVGVAPDQMPDSAKNAAAPKADPGKITGTTWQDFTRGKGVGKLNAVDSAELGYAGMKIEAVKDGKVVATAKAASDGTFTLPATADGAVLRLPASNFKEAYNGLDWLGPALVTPSIIGSYIWMWAGFAMVLIAAGLAGIPRDLLEAARVDGANEWQVFRKVTVPLLAPVLAVVVVTLMINVLKIFDLVFIIAPGSSQDDANVLALELYRKGFSEDQPGIASAIAVFLLLLVIPVMWFNIRRLRREVRR
>CP029788.1|AWT43606.1|3321417_3322335_+|sugar-ABC-transporter-permease
MTTDAGSVTKAAPPPASSSVQGRRSLGARLVGAVSGGVLRVFLIVVGLFWLVPTIGLLISSLRTPEDMGESGWWTVFSEPSQLTFESYRSLLENPDIQDSLVNTVLITVPATILVVVIGSLAGYAFAWMEFPGRDWWFLLVVGLLVVPVQVALIPIAELFGKLGLFGTVFGVILFHVGFGLPFAVFLLRNFFAEIPRELLEAARLDGAGELRLFARVVMPLGGPAIASLGIFQFLWVWNDMLVALVFTKSGTQPITVALQTQVRQFGNNVDVLAPGAFISMVVPLVVFFAFQRQFVSGVMAGAVK
>CP029788.1|AWT43607.1|3322481_3323549_+|hypothetical-protein
MPRFSVIVPAYQVQAYLPACLESVLTQSYADLEPIVVDDRSPDASGEIAGEYAARDPRVRALRLPRRAGAGGARAAGAAEATGDYLLFLDGDDTLTAHALRAIADRLKETGEPDVPVHAVAHAHRDGRVERDAAGMVLTEFLRPARAHYRRYRTPGAAVRPAGRLRHALIRFGLHRTHRLLRLAQAAAGRLAKAAVKAARAGRSALLRLHYRVQLRLPLRADRAVFAAHRDRSHGYHPGALEQAFRAHAPQVRTAWIAAPEHHHTVPPGPRRITPGPAAYWTALARSRYVVSNDHLGLVKRPGQVFVQTRHGTPAQAQVVPLDERRPVPSASAFARPPLATVPRPAAAPTVAERL
>CP029788.1|AWT43608.1|3323730_3325332_+|hypothetical-protein
MTVTSVLVRRPARGATALRGGRAWRPTPYQVFGFLFWLVMTLAYWRVPLCCDAGQHAAVVERLTARLLSPRHPTADLPGAGSPYYSPYAVAQGVFARLTGLGGWEVVRLAGPVNLLVLLAGLGRLVRALTPRPWAPVLALGAMTLLWGTERAWWSGYLGLMSMTGNLGYPSTFAIGLTFWAWSLTAARARDARRVRYVGPSGLRGAAGYGALGVLYGTILLVHPITSVAAATGAFAFVTAWQRRWSRAVAVRWAVTGAAAVLTAAVWPYFDAFSLAGNTGVDMIHRRLYDDLADRFWLALLPGLPALWLRARRAGRRASGGVAWRWAWRDPLVLMFAVDCLVVAYGWGSGHYTYGRVLGLTLMAPQCAVAVELAAPRPWRAWRRLLGAVAAGAALTGFLTVQAGAVVPRSLDPVGFEQPPRWPSYAWAARHIRPGEVVIADGYYAVHALAGYGPDLAAPAWPDPALDEAERQRRVADVRAYLAAGSTRAGRAAIVRRYHVRWLLLTPRRRLPEEAVVVAWSPRTGEVLARVAG
>CP029788.1|AWT43609.1|3325335_3325749_-|Ohr-subfamily-peroxiredoxin
MDALYTAVATATHGREGRAVSSDGKIDLALGLPVEMGGNGQGTNPEQLFAAGYAACFGSALGLVGRQAKVDVSDAAVTAEVGIGKQGEGFGLSVVLRVELPDTVDEATGRKLVEQAHQVCPYSNATRGNIDVELVIE
>CP029788.1|AWT43610.1|3325845_3326391_+|MarR-family-transcriptional-regulator
MADKRYPGGMSPTEPAAAAATASEEDWLRLDRQICFSLHAASRAFNGVYRVILKDLGLTYPQYLVMLVLWERGELPVKKLGEHLRLDSGTLSPLLKRLEAAGLVRRERSARDERSVEVRLTEEGVALRGRALQVPRRIVAATGCDLDEIRALRERLDDLTAALDTAAAEAMAADAAVPHAE

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Crispr_ID: CP029788_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_6

3410948-3411064

Orphan

Consensus_repeat	Method
CGGCACGGTCCGTTCGGCGTCGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP029788_6

>merge|CP029788|6|3410948-3411064|CRISPRCasFinder
GCGGCCCGTCGGTACGGCGTCGCCCGGCACGGTCCGTTCGGCGTCGCGAGTCCAGTCTGTTCGGCGTCGCGAGCCTGGTCTGCCCGGTGCTGCGCGGGACGGTCCGTTCGGCGTCGC

>CP029788|6|6|3410948-3411064|CRISPRCasFinder
GCGGCCCGTCGGTACGGCGTCGC	CCGGCACGGTCCGTTCGGCGTCGC
GAGTCCAGTCTGTTCGGCGTCGC	GAGCCTGGTCTGCCCGGTGCTGCG
CGGGACGGTCCGTTCGGCGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT43678.1\|3417254_3417782_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
CP029788.1\|AWT43662.1\|3402845_3403658_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
CP029788.1\|AWT43664.1\|3404295_3405576_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|367673
CP029788.1\|AWT43674.1\|3413825_3414185_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133388
CP029788.1\|AWT43668.1\|3408078_3409236_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
CP029788.1\|AWT43672.1\|3412158_3412554_+\|glyoxalase	unknown	unknown	gnl\|CDD\|380093
CP029788.1\|AWT43667.1\|3406730_3408008_+\|RNA-polymerase-subunit-sigma-24	unknown	unknown	gnl\|CDD\|227277
CP029788.1\|AWT43675.1\|3414270_3415449_-\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
CP029788.1\|AWT43679.1\|3417814_3419089_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP029788.1\|AWT43670.1\|3411151_3411658_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378696
CP029788.1\|AWT43677.1\|3415971_3417111_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
CP029788.1\|AWT47625.1\|3401822_3402116_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT43669.1\|3409447_3410791_+\|UDP-glucose-6-dehydrogenase	unknown	unknown	gnl\|CDD\|223936
CP029788.1\|AWT43665.1\|3405668_3406253_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
CP029788.1\|AWT43666.1\|3406380_3406734_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
CP029788.1\|AWT43663.1\|3403676_3404303_-\|hydrolase	unknown	unknown	gnl\|CDD\|319790
CP029788.1\|AWT43661.1\|3402398_3402767_+\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
CP029788.1\|AWT43673.1\|3412596_3413721_-\|peptidase-M19	unknown	unknown	gnl\|CDD\|366534
CP029788.1\|AWT43676.1\|3415453_3415975_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
CP029788.1\|AWT43671.1\|3411784_3412144_+\|glyoxalase	unknown	unknown	gnl\|CDD\|380093

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT43678.1\|3417254_3417782_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	7.80638e-26
CP029788.1\|AWT43662.1\|3402845_3403658_+\|SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	8.82457e-24
CP029788.1\|AWT43664.1\|3404295_3405576_-\|transcriptional-regulator	gnl\|CDD\|367673	pfam03816, LytR_cpsA_psr, Cell envelope-related transcriptional attenuator domain.	3.83544e-56
CP029788.1\|AWT43674.1\|3413825_3414185_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133388	cd01282, HTH_MerR-like_sg3, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	7.94825e-43
CP029788.1\|AWT43668.1\|3408078_3409236_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	0
CP029788.1\|AWT43672.1\|3412158_3412554_+\|glyoxalase	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	6.86689e-22
CP029788.1\|AWT43667.1\|3406730_3408008_+\|RNA-polymerase-subunit-sigma-24	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	2.2603e-136
CP029788.1\|AWT43675.1\|3414270_3415449_-\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	1.66311e-145
CP029788.1\|AWT43679.1\|3417814_3419089_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.51952e-34
CP029788.1\|AWT43670.1\|3411151_3411658_-\|hypothetical-protein	gnl\|CDD\|378696	pfam11706, zf-CGNR, CGNR zinc finger. This family consists of a C-terminal zinc finger domain. It seems likely to be DNA-binding given the conservation of many positively charged residues. The domain is named after a highly conserved motif found in many members of the family.	9.60595e-17
CP029788.1\|AWT43677.1\|3415971_3417111_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	1.27705e-178
CP029788.1\|AWT43669.1\|3409447_3410791_+\|UDP-glucose-6-dehydrogenase	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
CP029788.1\|AWT43665.1\|3405668_3406253_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	1.67073e-50
CP029788.1\|AWT43666.1\|3406380_3406734_+\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	8.42836e-28
CP029788.1\|AWT43663.1\|3403676_3404303_-\|hydrolase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.15192e-29
CP029788.1\|AWT43661.1\|3402398_3402767_+\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	4.38422e-18
CP029788.1\|AWT43673.1\|3412596_3413721_-\|peptidase-M19	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	8.13669e-107
CP029788.1\|AWT43676.1\|3415453_3415975_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	5.23571e-89
CP029788.1\|AWT43671.1\|3411784_3412144_+\|glyoxalase	gnl\|CDD\|380093	pfam18029, Glyoxalase_6, Glyoxalase-like domain. This entry comprises a diverse set of domains related to the Glyoxalase domain. The exact specificity of these proteins is uncertain.	4.63584e-26

>CP029788.1|AWT43669.1|3409447_3410791_+|UDP-glucose-6-dehydrogenase
MALKITVIGTGYLGATHAAAMAELGFEVLGLDVVQEKIDMLRRGEVPMYEPGLEELLRKHVDGIEGSTGRLRFTTDYAEVAAFGDVHFVCVNTPQRHGEYAADMSYVDAAIASLAPHLTGPALVVGKSTVPVGSAERLAAYLAAHAPAGADAELAWNPEFLREGFAVQDTLRPDRIVVGVRSDRAEKLLREVYATPISEGTPFVVTDFPTAELVKTSANSFLATKISFINAMAEVCEAAGGDVAKLAEAIGYDDRIGKKFLRAGIGFGGGCLPKDIRAFMARAGELGADQALTFLREIDSINMRQRGQMVELARQALGGGPFLGKRVAVLGASFKPDSDDVRDSPALNVAGQIHLQGGQVTVYDPKGMVNARRIFPTLGYADTALDAVRGADVVLHLTEWREFRELDPAELGEVAAARVILDGRNALDPELWRRAGWTYRAMGRPTA
>CP029788.1|AWT43668.1|3408078_3409236_-|acyl-CoA-dehydrogenase
MAGSADFDLYRPSEEHDMLRDAVRSLAEAKIAPHAAAVDEEARFPQEAHDALVANDLHAVHVPEEFGGAGADALATVIVIEEVARVCASSSLIPAVNKLGSLPVILSGSEELKKKYMTPLAKGDGMFSYCLSEPDAGSDAAGMKTRAVRDGDYWVLNGVKRWITNAGVSEYYTVMAVTDPTKRSKGISAFVVEKSDEGVSFGAPEKKLGIKGSPTREVYLDNVRIPADRMIGEEGTGFMTAMKTLDHTRITIAAQALGIAQGALDYAKGYVQERKQFGKPIADFQGIQFMLADMAMKISAARALTYQAAAASERGDADLTYLGAAAKCFASDVAMEVTTDAVQLLGGYGYTRDYPVERMMRDAKITQIYEGTNQVQRIVMARNLP
>CP029788.1|AWT43667.1|3406730_3408008_+|RNA-polymerase-subunit-sigma-24
MTGQRAADSVEAVFREDRSRLLALLAARFGDLDLAEETSSEAIEAALQRWPVDGVPDKPLAWLLTTARRKAVDRVRRDRVHARRLAALWVENDRAAAAAAAEPGFDDIPDERLQLFFTCCHPALSPEARIALTLRFLGGLTTPEVARALLVPTATMAQRIVRAKRKIRTARIPFRVPDPDELPGRLPSVLRVVYLIFTEGYAASSGDDLLRPELADEAIRLARLLHRLLPREREVTGLLALLLLTDARRAARTDATGAQVLLEDQDRTLWDADLIAEGQRLVVPALTGSGVGPYAVQAAIAALHDEAADLESTDWPQIVGLYDVLFALDPSPLVALNRAVAVAMCDGPEAGLVLLDELAGAEELRGYHLLPAARADLLRRLGRTAEAAEAYRTALDLAGNGPERATFARRLAELERGDRTGPAGD
>CP029788.1|AWT43666.1|3406380_3406734_+|hypothetical-protein
MKYLLLINTAAPDSTEEMPADGPTVEEFLAFEKAVTDAGVKLDGNALDLANATTVRVRVDGERVVTDGPFAETREIVGGYYLIDVPDLDAALDWAARCPGARYGTVEVRTVWEPDQA
>CP029788.1|AWT43665.1|3405668_3406253_+|acyl-CoA-thioesterase
MSPRHKVEAMTDQASAADSATPEIPGKPTAASRTTLSHIMTHNDTNLLGTVHGGVIMKLVDDAAGAVAGRHSGGPAVTASMDEMVFLEPVRVGDLVHVKAQVNWTGRTSMEVGVRVLAERWNESAPPTQVGSAYLVFAAVDADGKPRPVPPVIPETERDKRRYQEAQIRRTHRLARRRAIRELREKRAAEGFED
>CP029788.1|AWT43664.1|3404295_3405576_-|transcriptional-regulator
MNDWPQGWPDDNRGTPRYGRGSAGAQPEGARVMRQVRRGPAAPPGQGGYGGQIPPQPSYVDGGEGPDDGYGYDSGYNTGQVYGGSGGRGPAGTAGQTARPAPNWRRRIKWTAITVATVVVVTTVGTYFWADSKLRREVDLSTVIDRPEAGDGTNYLIVGSDSREGMSKEDKKKLHTGSAEGKRTDSMMILHVGDNGDTLISLPRDSDVEIPTYKGSESGKTFQGSGRHTKLNAAYAEDGPTLLVRTVEFNTGLHIDHYVEIGFAGFANIVDAVGGVDLTIDKPFKDKYSGADFQAGKQTLNGEQALAFVRTRHAFAASDLERTKNQQKFLAALAHQVATPSTVLNPFKLYPTMGAGLDSLIVDKDMSLWDLASMFFAMKGVNGGDGTSMNMPISGSSGGNLVWDKAKVKQLVNELNSDEKVTVKGD
>CP029788.1|AWT43663.1|3403676_3404303_-|hydrolase
MTEPTGGRPPFDAVLCDVDNVIRFYDNSGLLALERTAGLAEGTTMKVAFAPDVDLPVLLGQVTPREWVESIAAGLAGLVPDDTAWELGSTLLELPFRADEDVVALLRRARIRVPLVLVTNATLALEDDLAGLGLADLADDVVSSARVGLAKPDPRIFRLAASRAGVRPERCLFVDDTEENVTAAEALGMTAVHFRETADLEKALAPLL
>CP029788.1|AWT43662.1|3402845_3403658_+|SAM-dependent-methyltransferase
MIDTTEAFDAAEREMWDGRAEAYAGSFARLCAYPVPALLDAAGVTAGSHVLDVGTGTGTAAVAALERGARVAAVDAEAGMVAAARGRGVDARVAVLPELPYEDGEFDAVVANFVVNHVGRPRAALAELRRVLRPGGRLAVTLWGARRGAGQELLGRAVQAAQAVPAAGLPRLDPAEDFPRTPQGVAGLLTEAGFTGVRAEETAWDHRATRDEWWSGAAGGVATIGRVVTAQTPETIARIRSAYDRLADELTDTDGRLRLPHVAVLASGTA
>CP029788.1|AWT43661.1|3402398_3402767_+|four-helix-bundle-copper-binding-protein
MTMNQPGTAAAMSKEMQECVEACMACHTVCEETMSSCMQMGGQAQMQIMRALIDCSEMTRMCADMMMRRSPLSAEMCAMCARACDMCAEACMAMPDDAQMMRCAESCRRCADMCRAMAGATM
>CP029788.1|AWT47625.1|3401822_3402116_-|hypothetical-protein
MTAIGACLTPQLGRVTVRLPQELAEAAVAAWRRDEHAGQDSGDPESPGRYALRDQAAELALIGLAISERGRGDGTDVVVDLDIAAVGAAVRAAEQQP
>CP029788.1|AWT43670.1|3411151_3411658_-|hypothetical-protein
MTERSPAPGGLALVESLVNTLDIESGGDALDTAEGRARFGLAEPDVAAARELRESLRVALLAHAGHPPHRAVTPLGELLAAAPLVVTVDERDGSASLAAADEGPLLSRVAAAVAEAVVAGTWTRLKACEAVTCHWAYYDRSPAGRGRWCSMQVCGARAKMRRYRSKDA
>CP029788.1|AWT43671.1|3411784_3412144_+|glyoxalase
MSVAKLGAVVLDCPDPGALAAFYAEVLGGTVEGEGDWVDLKVPGGQALAFQAAEGFVPPRWPSAEHSQQFHLDLTAEDLDAAEEKVLALGAKPLDADDRSRTFRVYADPAGHPFCLCAC
>CP029788.1|AWT43672.1|3412158_3412554_+|glyoxalase
MAPFARLRNVVVDCPDPRALARFYAEIVGGEPAAEDPSWVVLRVPGGPRLTFQLSPDHTPPEWPRADRNAQQFHLDLDAGATWEEVDAAEKRVLALGARPLQRVDEEDFRVYADPAGHPFCLCRIDVAERV
>CP029788.1|AWT43673.1|3412596_3413721_-|peptidase-M19
MADLQDDLHTTPEIGALPVERPTGATVADAFPAEAYAAALEAVDRVRALLAEHPVADGYSGLPRALRRLPWYDLELGETDVATDVPRLREGHVGALFWSLHLPDDARPDRALSATLDQLDLARTVIRDHPEGLRLARTAGQVIDARNCGRVAVVLGPATAAALDDSLGILRVLRTLGVRVLTLAGTSWASEAGLTRFGEEVVREMNRLGVLADLSGASDATIARTLTLSRTPVLCSRSAARALRPHPDNLPDDLLAALGAAGGVCMVPLAAEQTGPTLRDVAEHLDHIRAVAGPESVGLSGTFDSGAAHPQDLTDTACYPPLIAELLRRGWPETDLALLTWGNVQRVLRSADFAARAAQERREPSAARTVELDD
>CP029788.1|AWT43674.1|3413825_3414185_-|MerR-family-transcriptional-regulator
MRIGELARRTGVSERSLRYYEKQGLLRAERTPGGHREYPEGAVDRVIRIQELFAAGLHSSRIAQLLPCMRDSDGGPSAIATPRLVEELAAERERIDRTIRDLQRSRETLDEVIATAAGG
>CP029788.1|AWT43675.1|3414270_3415449_-|membrane-dipeptidase
MTSTEAARELLAEFPVVDGHNDLPWALREQVSYDLAARDIAVDQSAHLHTDLRRLRAGGVGAQYWSVYVRSDLPDAVPATLEQIDCVRRLVDRHPADLRLALTAADMEAARREGRIASLMGAEGGHSIANSLGTLRGLYALGVRYLTLTHNDNVDWADSATDEPNVGGLSAFGREVVREMNRLGMLVDLSHVAATTMRDALDTSTAPVIFSHSSSRAVCDHPRNIPDDVLERLPANGGMAMVTFVPKFVLQAAVEWTAAADENMRAHGFHHLDTTPEAMKVHRAFEERHPRPVATVATVADHLDHMREVAGIDHLGIGGDYDGTAFTPEGLDDVSGYPNLIAELLDRGWSKADLAKLTWQNAVRVLGAAEDVARHLQATRAPSHATIESLDG
>CP029788.1|AWT43676.1|3415453_3415975_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSPVVGIVMGSDSDWPVMEAAAKALDEFEIDYEVDVVSAHRMPREMIAYGERAAERGLKVIIAGAGGAAHLPGMLASVTPLPVIGVPVPLKYLDGMDSLLSIVQMPAGVPVATVSVAGARNAGLLAARILAAHDEELLGRMKEFQQDLNDQATEKGKRLRAKVEGSGGFGFGK
>CP029788.1|AWT43677.1|3415971_3417111_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MTFPVVGMVGGGQLARMTHEAGIPLGIRFKLLSDTPQDSAAQVVNDVVVGDYRDLDTLREFARGCDVITFDHEHVPTEHLRALEADGIPVRPGPDALVHAQDKGVMRAKLSSIGVPCPRHRIVSDPADVAAFAAEGDGFPVVLKTVRGGYDGKGVWVVDSAEEAEEPFKAGVPVLAEEKVDYVRELAANVVRSPHGQAVAYPVVESQQVNGVCDTVIAPAPGLDGALALKAEQMALTIAKELDVVGHLAVELFQTRDGRILVNELAMRPHNSGHWTMDGAITSQFANHVRAVLDLPLGDPRPRATWTVMVNVLGGDFPDMYSAYLHCMARDPQLKIHMYGKDVKPGRKVGHVNTYGDDLDDVLERARHAAGYLRGTITE
>CP029788.1|AWT43678.1|3417254_3417782_+|GtrA-family-protein
MGQGSSGLHRLTHEIAKFGAVGAFGMVVNFAVSNALWHLTSLQAVRANVIATVVAIACNYIGFRYFTYRDRDKTDRTREMILFLAFSAIGLVIENGILFAAIYGFGWDSAIERNVFKFLGIGIATLFRFWSYRTWVFRALPVAEPKAETLAGQEPVAADEPVPAPAPPARPRQRV
>CP029788.1|AWT43679.1|3417814_3419089_-|two-component-sensor-histidine-kinase
MRRRLIQSTLAVVLVVIAVFGISLVIVETRTISSSAQERVDLEALRLASIVDSRLLSSEEVTEDILRGQVTQDRYAVVRMPGQRPIEVGDRPTGEVIRSKAARGDQGETVVVEEPRSTVTEEVGRTLLIIALVALLAVIAAVLLAIRQANRLASPLTDLAETAERLGSGDPRPRHKRYGVPELDRVADVLDASAERIGRMLTAERRLAADASHQLRTPLTALSMRLEEITLTDDLDTVKEEANVALTQVERLTDVVERLLTNSRDPRNGSAVTFDLDEVIQQQIAEWRPAYRSAGRAIVSSGKRHLHAVGTPGAVAQVLAALIENSLMHGGGTVALRTRVTGNQAVVEVTDEGPGVPADLGARIFERTISGRNSTGIGLAVARDLAEADGGRLELLQTSPAVFGLFLSRTPPAKKQPEDEPTVR

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Crispr_ID: CP029788_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_7

4894303-4894403

Orphan

Consensus_repeat	Method
TCCCCGGAAGCCGGATCAGGCAGCCGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029788_7

>merge|CP029788|7|4894303-4894403|CRISPRCasFinder
TCCCCGGAAGCCGGATCAGGCAGCCGGGCCACCCAGCCAGTCGTCCGCGGGGTCAGCCTGTAAGGGCCCCTTCCCCGGAAGCCGGGTCAGGCAGCCGGGCC

>CP029788|7|7|4894303-4894403|CRISPRCasFinder
TCCCCGGAAGCCGGATCAGGCAGCCGGGCC	ACCCAGCCAGTCGTCCGCGGGGTCAGCCTGTAAGGGCCCCT
TCCCCGGAAGCCGGGTCAGGCAGCCGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT44891.1\|4898693_4899128_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
CP029788.1\|AWT44895.1\|4902142_4902673_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
CP029788.1\|AWT44885.1\|4890788_4892234_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
CP029788.1\|AWT44880.1\|4886357_4887011_-\|NAD-dependent-dehydratase	unknown	unknown	gnl\|CDD\|187554
CP029788.1\|AWT44882.1\|4888881_4889046_+\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|234783
CP029788.1\|AWT44893.1\|4900052_4900946_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT44897.1\|4903718_4907204_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
CP029788.1\|AWT44883.1\|4889168_4889630_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379194
CP029788.1\|AWT47741.1\|4890182_4890707_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP029788.1\|AWT44879.1\|4886080_4886293_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT44896.1\|4902790_4903180_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|234671
CP029788.1\|AWT44890.1\|4897652_4898513_+\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
CP029788.1\|AWT47742.1\|4895581_4896808_-\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|235596
CP029788.1\|AWT44892.1\|4899206_4899932_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
CP029788.1\|AWT44894.1\|4901032_4901851_+\|DUF1396-domain-containing-protein	unknown	unknown	gnl\|CDD\|369238
CP029788.1\|AWT44887.1\|4893231_4894296_+\|UDP-N-acetylenolpyruvoylglucosamine-reductase	unknown	unknown	gnl\|CDD\|237552
CP029788.1\|AWT44889.1\|4897284_4897572_+\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
CP029788.1\|AWT44886.1\|4892297_4892678_+\|DUF3291-domain-containing-protein	unknown	unknown	gnl\|CDD\|378694
CP029788.1\|AWT44884.1\|4889638_4890067_+\|dehydratase	unknown	unknown	gnl\|CDD\|239537
CP029788.1\|AWT44881.1\|4887076_4888345_-\|hydrolase	unknown	unknown	gnl\|CDD\|238618

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT44891.1\|4898693_4899128_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	4.26794e-96
CP029788.1\|AWT44895.1\|4902142_4902673_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	1.98444e-68
CP029788.1\|AWT44885.1\|4890788_4892234_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.15505e-89
CP029788.1\|AWT44880.1\|4886357_4887011_-\|NAD-dependent-dehydratase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.20366e-56
CP029788.1\|AWT44882.1\|4888881_4889046_+\|50S-ribosomal-protein-L33	gnl\|CDD\|234783	PRK00504, rpmG, 50S ribosomal protein L33; Validated.	3.68173e-22
CP029788.1\|AWT44897.1\|4903718_4907204_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
CP029788.1\|AWT44883.1\|4889168_4889630_+\|hypothetical-protein	gnl\|CDD\|379194	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase. It is clear from the structures of bacterial members of MaoC dehydratase, pfam01575, that the full-length functional dehydratase enzyme is made up of two structures that dimerize to form a whole. Divergence of the N- and C- monomers in higher eukaryotes has led to two distinct domains, this one and MaoC_dehydratas. However, in order to function as an enzyme both are required together.	2.61536e-40
CP029788.1\|AWT47741.1\|4890182_4890707_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.96369e-11
CP029788.1\|AWT44896.1\|4902790_4903180_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|234671	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed.	2.33133e-42
CP029788.1\|AWT44890.1\|4897652_4898513_+\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.34174e-79
CP029788.1\|AWT47742.1\|4895581_4896808_-\|aspartate-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
CP029788.1\|AWT44892.1\|4899206_4899932_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	7.48585e-147
CP029788.1\|AWT44894.1\|4901032_4901851_+\|DUF1396-domain-containing-protein	gnl\|CDD\|369238	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein. This entry consists of several lipoproteins mainly from Mycobacterium species, collectively known as the LppX_ LprAFG family. Proteins in this entry include LprG, LppX, LprF and lprA.	4.98742e-08
CP029788.1\|AWT44887.1\|4893231_4894296_+\|UDP-N-acetylenolpyruvoylglucosamine-reductase	gnl\|CDD\|237552	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase.	0
CP029788.1\|AWT44889.1\|4897284_4897572_+\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	3.70499e-19
CP029788.1\|AWT44886.1\|4892297_4892678_+\|DUF3291-domain-containing-protein	gnl\|CDD\|378694	pfam11695, DUF3291, Domain of unknown function (DUF3291). This bacterial family of proteins has no known function.	0.000186473
CP029788.1\|AWT44884.1\|4889638_4890067_+\|dehydratase	gnl\|CDD\|239537	cd03453, SAV4209_like, SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.	1.81063e-59
CP029788.1\|AWT44881.1\|4887076_4888345_-\|hydrolase	gnl\|CDD\|238618	cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.	5.07587e-89

>CP029788.1|AWT44887.1|4893231_4894296_+|UDP-N-acetylenolpyruvoylglucosamine-reductase
MQVLHDAPLAPLTTFRLGGPADRLVTATTDAEVIDAVREADATGTPLLVIGGGSNLVIGDKGFAGTALRIATTGFELTGTTLELAAGEVWTDAVARTVDAGLAGIECLAGIPGSAGATPIQNVGAYGQEVSSTITEVIAYDRRAHETVTLTNADCVFTYRHSRFKADPDRYVVLRVRFALEDAGGLSAPLKYAETARALGVEPGDRVPLAEARETVLKLRAGKGMVLDPEDHDTWSAGSFFTNPILTDEQFAAFHARVRARLGDGVEPPAYPAGPGHPGHTKTSAAWLIDKAGFTKGYGTGPARISTKHTLALTNRGEATTEDLLALAREVVAGVREAFGITLVNEPVTVGVSL
>CP029788.1|AWT44886.1|4892297_4892678_+|DUF3291-domain-containing-protein
MPTLPWTVPNTPPAGADVHVFASRFETRTFLGAVRFLMRTAGVWRQVGRAPGAYGASLKAQPFRRTFWTLSAWESAEALKAFAGGGVHAPVSRGLAGEMRDVRFASWTTSSDELPVRWEEAARRLR
>CP029788.1|AWT44885.1|4890788_4892234_+|MFS-transporter
MSQQTAPRGGAAWALVITSVAGFMAALDNLVVTTALPSLRKDLGGALDDLEWTVSAYTLTFAVLLMFGAALGDRFGRRRLFQVGVTIFTGASAAAAMAPGIGSLIAARAAQGVGAAVMMPLTLTLLTAAVPAAKRGMAYGIWGAVNGLAVASGPLIGGSLTEHISWHWIFWLNVPLGVALLPLARLRLAESYGAGARLDLPGTLLASGGLFGIVYGLVRGPADGWTSPLVLTGLFAGSALLAAFVLHGMRAKNPMLPMRLFRSRAFSGINAASLLMFLGMFGSIFLLSQYMQSVLGYSPTQAGLRMLPWTGMPMLVAPIAGILSDRIGGRPVVATGLFFQAAGLAYLASVATTDASYAAQLPGLIISGIGMALFFAPASNLVMSSVRASEQGIASGANNALREVGGALGIAIMSSIFSARGGYESGQAFVDGLRPALVTGAGVVALAGVAALVIPRRRAAERDGSASPARSSSPALETASR
>CP029788.1|AWT47741.1|4890182_4890707_+|TetR-family-transcriptional-regulator
MSAEERRESVIRAATTEFARGGYHGTSTEAIAKRVGVSQPYLFRLFPGKKAIFLAVAQRCVDDTIRTFEKAAEGLEGEEALHAMGEAYTKVIAEQPERLMMQMQMYLAVAAAEAEGDSEFGEAVRAGWTRLWDTILLSLGADVEQTTTFMAHGMLINCLVAMGFPRDHRVWEGF
>CP029788.1|AWT44884.1|4889638_4890067_+|dehydratase
MTAKIAYDDVEVGTELPAQSFPVTRATLVQYAGASGDFNPIHWNEKFAKEVGLPDVIAHGMFTMAEAIRVVTDWTGDPGAVVEYGVRFTKPVVVPNDDQGAVIEVSGKVAAKLDDNTVRVDLTATSAGQKVLGMSRAVVRLA
>CP029788.1|AWT44883.1|4889168_4889630_+|hypothetical-protein
MALDQSFVGRSYPPTEPYEVGREKIREFAEAVGDANPAYTDPEAAKALGHPDVIAPPTFVFAITFKAAGQVIQDPQLGLDYSRVVHGDQKFSYVRPVRAGDRLTVTSTIEAIKSMAGNDILDIRGEVHDEAGEHVVTAWTKLVARAADTEGEA
>CP029788.1|AWT44882.1|4888881_4889046_+|50S-ribosomal-protein-L33
MAATDVRPKITLACVECKERNYITKKNRRNNPDRLEMKKHCPRCNAHTAHRETR
>CP029788.1|AWT44881.1|4887076_4888345_-|hydrolase
MPDSQPQPPHATPPPSGPADASLLLCGARLTDGRRVDVRLVGGRIEAVGTAGSLAGPPGRGGTRVDLGGYLLLPAPAEPHAHADTALSADADGPVPYDAQDVQRRATEAALLQLGHGATAQRAHVRVGDVQGLGALAAVLQARRALRGLVELTTVAMPRVLTGVAGADGLAVLRDAMKMGASVVGGCPDLDPDPTGYVEAVLEVASEHGCPVDLHTDAADPARLARVAAMAGGLRPGVTISPCGGLDRLPADAAARTADQLAAAGVAVVCLPQGGCGGVEARGTQGRGAAPVRLLRAAGVRLAAGSGALRDACNPVGRGDPLEAAYLLASREGLRPEDAYDAVSSAARAVLGLPEVRVEAGFPAELLAVRGDQLAGALSLAYSRIVVHRGRVVARTSAVREFCDSAAAVELGLPRQGRNELS
>CP029788.1|AWT44880.1|4886357_4887011_-|NAD-dependent-dehydratase
MRIVIAGGHGQIALRLERLLAARGDEVAGLIRKAEQGDDLREAGAEPVLLDLESASVEEVAAHLQGADAAVFAAGAGPGSGVARKDTVDKGAAVLFADAAVRARVRRFVVVSSMGADARHQGDDVFDVYLRAKGEADDHVRGLDLDWTILRPGSLTNDAGTGLVRLEARTGRGPVPRDDVAAVLAELVDTPATTGLTLELVSGSTPVSVAVKSVAGN
>CP029788.1|AWT44879.1|4886080_4886293_+|hypothetical-protein
MSSRRRHCPECRREIAVVAGRFARHDPPGARGNGALTSCPGSRRPAQLGAVQPSLDGYVVPEIPGQLPLF
>CP029788.1|AWT47742.1|4895581_4896808_-|aspartate-aminotransferase
MSAATPPTERRVSARIGAISESATLAVDAKAKALKAAGRPVIGFGAGEPDFPTPDYIVEAAVEACKNPKFHRYTPAGGLPELKAAIAQKTKRDSGYEVEAAQVLVTNGGKQAIYEAFAAILDPGDEVIVPAPYWTTYPESIRLAGGVPVEVVADETTGYRVSVEQLEAARTENTKVLLFVSPSNPTGAVYTREQIEEIGRWAAEKGLWVLTDEIYEHLVYGDAEFHSLPVVVPELADKCIVVNGVAKTYAMTGWRVGWVIGPKDVVKAATNLQSHATSNVSNVAQAAALAAVSGDLSAVEKMKEAFDRRRKTIVRMLNEIDGVLCPEPEGAFYAYPSVKGLLGKEIRGKRPQDTVELAALILEEAEVAVVPGEAFGTPGYLRLSYALGDEDLVEGVSRIQKLLAEARD
>CP029788.1|AWT44889.1|4897284_4897572_+|preprotein-translocase-subunit-SecE
MADAVGSIDTPDAQDEAAETRKKTRKGGKRAKKGPLKRLALFYRQIIAELRKVVWPTRNQLTSYTTVVIFFVIVMIALVTVIDYGLSHAAKYVFG
>CP029788.1|AWT44890.1|4897652_4898513_+|transcription-termination/antitermination-protein-NusG
MSDQNLNDAVEPRGEGVESVDDELDIVGGADEDLDEVEAADAEADEPAEEAAVHAEDVEDADEEAAEDAEESAEAEEETAPVDPVEALREELRTLPGEWYVIHTYAGYENRVKTNLEQRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPGYVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAAREAAEAEGKPAPQRKVEVQVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVELSFDQIQKN
>CP029788.1|AWT44891.1|4898693_4899128_+|50S-ribosomal-protein-L11
MPPKKKKVTGLIKLQIQAGAANPAPPVGPALGQHGVNIMEFCKAYNAATESQRGWVIPVEITVYEDRSFTFITKTPPAAKMILKAAGVDKGSGEPHKTKVAKITQAQVREIAQTKMPDLNANDLDAAAKIIEGTARSMGVTVEG
>CP029788.1|AWT44892.1|4899206_4899932_+|50S-ribosomal-protein-L1
MSKRSKALKAADAKVDREKLYAPLEAVRLAKETSTTKFDATVEVAFRLGVDPRKADQMVRGTVNLPHGTGKTARVLVFATGDRAEAARAAGADIVGADELIDEVSKGRLDFDAVVATPDLMGKVGRLGRVLGPRGLMPNPKTGTVTPDVTKAVTDIKGGKIEFRVDKHSNLHFIIGKASFDDAKLVENYGAALEEILRLKPSAAKGRYIKKAAITTTMGPGIPVDPNRTRNLLVEEDPAAV
>CP029788.1|AWT44893.1|4900052_4900946_+|hypothetical-protein
MRHRGTARPRGAAPTTTALLAAVAALTALTGCGGSDDGAARPDATGGTVSAAPRPDPRTADALRAVERAVAGAGSARISSTTAMGDLLSTRTEGALDWAGDSTGTLRITYTGGSLTEPLRKLGTTTMEARLLPDAYYARVGEDFARRMGGRHWIRYDFDDLAELPGDSGAYLRDQLRDTAPVLPVRLLLASGTVRETGRETVGGRATRHYTGTVDVSALGDVALRRQLTDAGVTAEQVDIWVDEKNLLVKKVEKAEMTSGPMTQTAYYDTYGVRVAVQRPPDGDTEDFEALMGGQGS
>CP029788.1|AWT44894.1|4901032_4901851_+|DUF1396-domain-containing-protein
MKRAVSTAALAGLLLAGAVGCGKGEQSPDLEPAAAVARAAKNADAVTSFRYRLDGRVPGEGRVRGEAAMSTKPPALSMKITPEDQADAGQVEIRFVDKAMYINGGAEAAGEMDGKSWIKFDMSKAGKEANPLAGAGATAEQNPAAQSTFLAGADDVREVGAETVDGVKTTHYQGTATLDALEKSLKGTDKASRDKRQKSLDEFEKLGIDKLSMDLWVDGEDHTKRFRMRGDADKGPLDMTITFYDVNKPVTVTAPPAKDVADLAEMMKGVQG
>CP029788.1|AWT44895.1|4902142_4902673_+|50S-ribosomal-protein-L10
MARPDKAAAVAELTDKFRNSSAAVLTEYRGLTVAQTRKLRLALGENAQYAVVKNTLTKIAANEAGITTLDDLFNGPTAVAFVTGDPVESAKGLRDFAKENPNLVIKGGVLDGKALSADEIKKLADLESREVLLSKLAGAFKAKQSQAASVFQALPSKLVRTVDALRAKQAEQGGAE
>CP029788.1|AWT44896.1|4902790_4903180_+|50S-ribosomal-protein-L7/L12
MAKLTQDELLAQFEEMTLIELSEFVKAFEEKFDVTAAAAAPVVVAGGAAGGAAAEAEEEKDEFDVILTGAGDKKIQVIKVVRELTSLGLKEAKDLVDGTPKPVLEKVNKEQADKAAEALKGAGASVEVK
>CP029788.1|AWT44897.1|4903718_4907204_+|DNA-directed-RNA-polymerase-subunit-beta
MAASRTASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNTAWQSRVEEALENGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAPLFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSIDKTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEFGEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVGRYKVNKKLGTDTPLDAGILTVEDIIATIKYLVKLHAGETETVGDNGQPVVVETDDIDHFGNRRLRSVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLIGSLATYGRVNAFGFVETPYRKVVDGQVTDEVNYLTADEEDRFVIAQANAPLTADMRFEEARVLVRRRGGEVDYVAPEDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQAVPLIKSEAPLVGTGMEYRSAVDAGDVVKAEKDGVVQEVSADYITTANDDGTYITYRLAKFSRSNQGTSVNQKVIVNEGDRVITGQVLADGPATQNGEMALGKNLLVAFMPWEGHNYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGAEVIAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGVRVFDREEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVDIILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADEWAQRLQAIGADKVEPGTNVATPVFDGAREDELAGLLQHTIPNRDGERMVLPSGKARLFDGRSGEPFPDPISVGYMYILKLHHLVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDVTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFRAAEELGIDLSRREPSSVEEV

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Crispr_ID: CP029788_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_8

5325477-5325789

Orphan

Consensus_repeat	Method
CGGGACGCCCGCCGGCGGAGGGCGGACG	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP029788_8

>merge|CP029788|8|5325477-5325789|CRISPRCasFinder
CGGGGCGCGGGCCGGGCGTGGTGGGTCGTGCGCTCTTGGAGGCCGGTCGGGGGCCGGAGGCCGCGGGACGCCCGCCGGCGGAGGGCGGACGGGTGCCCGGGGCGGACGGGCGCCCGCCGGCAGAGGGCGGAGGAGTGCCCGGGGCGGACGGGCGCCCGCCGGCGGAGGGCGGACGCGGACCTGGGGTGGGGGTGCGCGCGTCGTCGGAGGCGGGCCGCGCGGCGGGACGCCCTGCGGCGGAGGAGGGCCGCGCACCCGGAGCGCCCGGACGCGCACCGCTCTTCGGCGGCCGCCCGTCGCCGGAGGACGGACT

>CP029788|8|8|5325477-5325789|CRISPRCasFinder
CGGGGCGCGGGCCGGGCGTGGTGGGTCG	TGCGCTCTTGGAGGCCGGTCGGGGGCCGGAGGCCG
CGGGACGCCCGCCGGCGGAGGGCGGACG	GGTGCCCGGGGCGGACGGGCGCCCGCCGGCAGAGGGCGGAGGAGTGCCCGGGGCGG
ACGGGCGCCCGCCGGCGGAGGGCGGACG	CGGACCTGGGGTGGGGGTGCGCGCGTCGTCGGAGGCGGGCCGCGCGG
CGGGACGCCCTGCGGCGGAGGAGGGCCG	CGCACCCGGAGCGCCCGGACGCGCACCGCTCTTCG
GCGGCCGCCCGTCGCCGGAGGACGGACT

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT45240.1\|5326123_5327212_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
CP029788.1\|AWT45247.1\|5363793_5373699_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237108
CP029788.1\|AWT45245.1\|5349534_5362152_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
CP029788.1\|AWT45237.1\|5321697_5322906_-\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|272979
CP029788.1\|AWT45248.1\|5373695_5374970_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
CP029788.1\|AWT45234.1\|5319609_5320644_-\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
CP029788.1\|AWT45242.1\|5327552_5327822_-\|prevent-host-death-protein	unknown	unknown	gnl\|CDD\|376852
CP029788.1\|AWT45238.1\|5323085_5324102_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
CP029788.1\|AWT45246.1\|5362732_5363299_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT47780.1\|5324952_5325345_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT45232.1\|5318349_5319030_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377959
CP029788.1\|AWT45235.1\|5320770_5321298_+\|DUF4245-domain-containing-protein	unknown	unknown	gnl\|CDD\|379430
CP029788.1\|AWT45249.1\|5375036_5376077_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274922
CP029788.1\|AWT45231.1\|5316487_5318158_-\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|237955
CP029788.1\|AWT45241.1\|5327296_5327560_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
CP029788.1\|AWT45239.1\|5324152_5324896_+\|polyphosphate-glucokinase	unknown	unknown	gnl\|CDD\|224851
CP029788.1\|AWT45236.1\|5321445_5321688_-\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|179195
CP029788.1\|AWT45233.1\|5319142_5319520_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
CP029788.1\|AWT45244.1\|5328737_5349533_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
CP029788.1\|AWT45243.1\|5327995_5328469_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370266

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT45240.1\|5326123_5327212_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
CP029788.1\|AWT45247.1\|5363793_5373699_+\|hypothetical-protein	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP029788.1\|AWT45245.1\|5349534_5362152_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP029788.1\|AWT45237.1\|5321697_5322906_-\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|272979	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. [DNA metabolism, Degradation of DNA].	4.98881e-160
CP029788.1\|AWT45248.1\|5373695_5374970_+\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.79125e-41
CP029788.1\|AWT45234.1\|5319609_5320644_-\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
CP029788.1\|AWT45242.1\|5327552_5327822_-\|prevent-host-death-protein	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	4.06184e-07
CP029788.1\|AWT45238.1\|5323085_5324102_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
CP029788.1\|AWT45244.1\|5328737_5349533_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
CP029788.1\|AWT45232.1\|5318349_5319030_+\|hypothetical-protein	gnl\|CDD\|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	4.44503e-18
CP029788.1\|AWT45235.1\|5320770_5321298_+\|DUF4245-domain-containing-protein	gnl\|CDD\|379430	pfam14030, DUF4245, Protein of unknown function (DUF4245). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 188 and 235 amino acids in length.	2.97281e-55
CP029788.1\|AWT45249.1\|5375036_5376077_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274922	TIGR04020, non-ribosomal_peptide_synthetase, natural product biosynthesis luciferase-like monooxygenase domain. This model describes a subfamily within the bacterial luciferase-like monooxygenase (LLM) family that regularly occurs within large non-ribosomal protein synthases/polyketide synthases, but also as small proteins. The LLM family includes members that bind either FMN or F420, and FMN is more likely in this case because many members are from species that lack F420 biosynthesis capability. An example member is the MupA protein of mupirocin biosynthesis in Pseudomonas fluorescens NCIMB 10586.	8.92296e-172
CP029788.1\|AWT45231.1\|5316487_5318158_-\|fumarate-hydratase	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
CP029788.1\|AWT45241.1\|5327296_5327560_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	1.73682e-15
CP029788.1\|AWT45239.1\|5324152_5324896_+\|polyphosphate-glucokinase	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.44889e-35
CP029788.1\|AWT45236.1\|5321445_5321688_-\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|179195	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional.	4.74738e-18
CP029788.1\|AWT45233.1\|5319142_5319520_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	4.51405e-20
CP029788.1\|AWT45243.1\|5327995_5328469_-\|hypothetical-protein	gnl\|CDD\|370266	pfam09056, Phospholip_A2_3, Prokaryotic phospholipase A2. The prokaryotic phospholipase A2 domain is predominantly found in bacterial and fungal phospholipases, as well as various hypothetical and putative proteins. It enables the liberation of fatty acids and lysophospholipid by hydrolysing the 2-ester bond of 1,2-diacyl-3-sn-phosphoglycerides. The domain adopts an alpha-helical secondary structure, consisting of five alpha-helices and two helical segments.	5.58386e-48

>CP029788.1|AWT47780.1|5324952_5325345_-|hypothetical-protein
MRRLPNPRLTGLGGGLFCAAVMIVLGFLVRLLFGASETVYGVLFLPVSALTALWVRRGDLLTAPVVVPIAFAAGLLTAADGGEGVGGWLMGLVTALATQAGWLYGGTIVAAVITLGRGLRAAHHRRRRNP
>CP029788.1|AWT45239.1|5324152_5324896_+|polyphosphate-glucokinase
MQIFGVDIGGSGIKGAPVDLDKGDLAQERHKVLTPHPATPDGVADGVKQVVEHFGWTGPVGLTFPGVVTGGATVRTAANVDKSWVDTDARALFSERLGGLPVTVVNDADAAGVAEMHFGAGKDRRGTVILLTFGTGIGSAVFTDGVLVPNTELGHLELGGHDAEKRASSKAKEDHELSWEHWARRVQKYLAHVEMLFSPELFIIGGGVSRKSQKFLPHIEGIRAEIVPAQLQNNAGIVGAAMRAAEV
>CP029788.1|AWT45238.1|5323085_5324102_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MGCMTASPGRRVLLAAPRGYCAGVDRAVIAVEKALEQYGAPVYVRHEIVHNKYVVQTLEKKGAVFVERTEEVPPGNIVMFSAHGVAPTVHEEARQGRLATIDATCPLVTKVHKEAIRYANEDYDILLIGHEGHEEVIGTSGEAPDHIQLVDGPGDVEKVEVRDPSKVVWLSQTTLSVDETMETVDALKTKFPGLVSPPSDDICYATQNRQLAVKQMGAEADLVIVVGSRNSSNSKRLVEVAKLAGAREAYLVDFAKEIDEAWLEGVTTVGVTSGASVPEVLVEEVLAWLAERGFEDVEIVKAAEESITFSLPKELRRDLREEAAALVAERGGAGPAGA
>CP029788.1|AWT45237.1|5321697_5322906_-|exodeoxyribonuclease-VII-large-subunit
MAVNTSADTPIPVGEVSRLIGGWIDRLGAVWVEGQITQLSRRPGAGVVFLTLRDPSYDISVSVTCYRQVFDAVADVVGEGARVVVHAKPEWYAPRGQLSLRAAEIRPVGVGELLARLEQLKKSLAAEGLFAPERKKPLPFLPQLIGLVCGRASAAERDVLENARHRWPHVRFEVRNVPVQGVHAVPQVVQAVKELDEIDEVDVIIVARGGGSVEDLLPFSDEQLVRAVAACRTPVVSAIGHEPDTPLLDYVADLRASTPTDAAKKVVPDVGEELERVRMLRGRARRSVEALVEREERGLAHALARPSIQDPHRMIDEREDQVAALVERSRRCLGHLLDRADSELTHTHARVVALSPAATLQRGYAVLQKADGHVVRAPGEVTAEEPLRARVAEGEFIVRVDV
>CP029788.1|AWT45236.1|5321445_5321688_-|exodeoxyribonuclease-VII-small-subunit
MTSKVDEALGYEQARDELIEVVRRLEAGGTTLEESLALWERGEELARVCRRWLEGARARLDAALAEEEAGESPADGAGEG
>CP029788.1|AWT45235.1|5320770_5321298_+|DUF4245-domain-containing-protein
MAGSNGKQKTVRDMVLSLGLIMIAALAVYLFIPHDDHAPDIKRVDYRVELLTARRAASYPVAAPEGLPQSWKPTSVRFDGADFDAWHLGYHAPDGEYVAIEQSTDKRARFIDEASQGAEATEVTQQIGGRTWIRYTGGRYDALVLKDTPGGSTTVVAGTASFDQLAKMAGALKMA
>CP029788.1|AWT45234.1|5319609_5320644_-|class-II-fructose-bisphosphatase
MTEHHHLPSELDVPSEAPDRNLALELVRVTEAAAMAAGRWVGRGDKNGADGAAVRAMRTLVSTVSMNGVVVIGEGEKDEAPMLYNGERVGDGTGPEVDIAVDPIDGTTLTAKGMPNAIAVLAAAERGSMFDPSAVFYMDKLVTGPEAADFVDIDAPVAVNIRRIAKAKRSTPEDVTVVILDRPRHEGLIKEVREAGARIKLISDGDVAGSIYALREGTGVDLLLGIGGTPEGIISACAVKCLGGTIQGKLWPKDEEERQRAIDAGHDLDRVLTTDDLVSGENVFFVATGITDGELLRGVRYKSETALTESIVMRSKSGTVRRIDSEHRLSKLRAYSAIDFDRAK
>CP029788.1|AWT45233.1|5319142_5319520_+|WhiB-family-transcriptional-regulator
MLQPPHSSLQVAAVPAQRVPARDRDQDAPWHTEAVCRRDEAGLFFAPSKEPTAARLSREEAAKRVCARCPVMVECREHALLQPEPYGVWGGLTAAERRVVLARRRRREMELKKAARTTDRIAAAG
>CP029788.1|AWT45232.1|5318349_5319030_+|hypothetical-protein
MDLQKQTAPTPTAELRASDAERDRIADILRDALAEGRLTAEEHAERVEGVLAARTVGELEAFVRDLPAAHARRAPGAVPGRPAAGAVPADPDDNVVAVFSSATRRGRWRAGRRIHAYAVFGSVEIDLSEALFEYQQVVIKAVSVFGNIEIRVPENVSLHGTGGGVLGNFEVDALDSGDPDAPVVYVEGWAVLGNIEGRPRRGRIVADILDRVQRKVDKNLRKHLDR
>CP029788.1|AWT45231.1|5316487_5318158_-|fumarate-hydratase
MPEFAYTDLLPQGEDTTPYRLVTSEGVSTVEGPDGRTFLKVEPEALRKLAAEAIHDIQHYLRPAHLAQLRRIIDDPEASSNDKFVALDLLKNANIAAAGVLPMCQDTGTAIVMGKRGQNVLTSGEDEKHLSHGIYDAYTKLNLRYSQMAPLTMWEEKNTGSNLPAQIELYATDGGAYKFLFMAKGGGSANKSFLYQETKAVLNEASMMKFLEEKIRSLGTAACPPYHLAIVVGGTSAEYALKTAKYASAHYLDNMPAEGSPLGHGFRDKELEEKVFELTQKIGIGAQFGGKYFCHDVRVVRLPRHGASCPVAIAVSCSADRQAVAKITAEGVFLEQLETDPARFLPDTTDEHLESDGDVVKIDLNQPMDTILAELTKYPVKTRLSLTGPLVVARDIAHAKIKERLDAGEEMPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVEQFQAAGGSKVMLAKGNRSKQVTDACNAHGGFYLGSIGGPAARLAQDCIKKVEVLEYEELGMEAVWKIEVEDFPAFIVVDDKGNDFFQDPAPAPTFTSIPVRGPGLA
>CP029788.1|AWT45240.1|5326123_5327212_+|redox-regulated-ATPase-YchF
MSLTIGIVGLPNVGKSTLFNALTKNDVLAANYPFATIEPNVGVVGVPDPRLTKLAEIFKSERTLPATVDFVDIAGIVRGASEGEGLGNKFLANIRESDAICQVIRAFKDENVVHVDGKVSPKDDIETINTELILADLQTIEKVLPRLQKESRIKKDVAPKVKAVEEAKEILEKGDTLFAHGIVQGSERAELLHDLHLLTTKPFLYVFNVDEDELTDESFKEEQRALVAPAEAIFLNAKLEADLAELDEEDALELLQSVGAEEPGLATLARVGFDTLGLQTYLTAGPKESRAWTIKKGATAPEAAGVIHTDFQKGFIKAEVISFDDLVEAGSVAEARAKGKARMEGKDYVMQDGDVVEFRFNV
>CP029788.1|AWT45241.1|5327296_5327560_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSEYRTVFRPEAQAELRKIPRDMALRILAKLTELESDPLGFNTTALVSQPDRRRLRVGDYRVIYTIDNGELVVWAVHVGHRSTVYDS
>CP029788.1|AWT45242.1|5327552_5327822_-|prevent-host-death-protein
MTEPLPIESIRDVRAHLAEVVERADRDDVPTVITRRGKQVAAVVSIEVLRKYQEWEEREINRIIDERMANRAPGIPIEDIMRETLARGE
>CP029788.1|AWT45243.1|5327995_5328469_-|hypothetical-protein
MRRRLATLLAAAAGALAVASPASAAPADKPQVLSSWTQTSAESQNAWLSARADQGAWSAYGFDWSTDYCTTSPDNPFGFPFQTACARHDFGYRNYKAAGTFDTNKSRLDDAFYADLKRVCSAYSGLKKTSCDSTAWTYYQAVKAFGSSAAVDGARAA
>CP029788.1|AWT45244.1|5328737_5349533_+|non-ribosomal-peptide-synthetase
MPRSVGSVHEHRSGSVSRLALSEVRNDVRLPVTAAQLGVWVAQRLAPESALYQCAVHFDSGPLDIGVLRRSVTRAVAETEALRARFGDDGEVFQIVAGAVDAPVDLVDLRGEADPEAAARAWMDQDMATTPDLEAGPLFRHALLVLSDRRHFFYLRYHHIVLDGFGQTRYLDRLARIYTALLAGQEPAPAGARGLDVLLAEERAYLESPHHASDRDLLLGRLAGAEERQSLADGAAAAAPRALRLRTELPRELTRALTAVGHWPAVIAAATAVYHHRLLSVDDVVLGIPVAARRTPAALTTPSMLANDVPLRLTVGPDATFAELVHAARTELGALLRAQRFRREELHEASELTGTDGTVFATAVNAMSFDARVRFGEVLATARQLSNGPVADLAMATYGDPAEGGVLLEFAANPELYTEDELRAHQDRFLRLLGSLAESPEAPVGRAHLLAPAVAEELLHGVNDTAGDVPGALVELFEQQAAATPDAVALCAEETLTYAELDARANRLARLLSARGVGTERLVGVVLPRSANLVVTLLAVLKAGGAYLPIDPEHPADRRAMVLDDARPELLVTVSGGEVPGGVPALFLDEVDLSAGDTSPLGRVQDPRSTAYVIYTSGSTGRPKGVVLERSAMDNFLAAMARAVPVGPGDRLLAVTTVSFDIAVLEIFQPLLAGARVVLASRDEVLDPDALRAIVEREGITVMQATPSLWQPLVETRPEVFAGVRVLTGGEALPQSLAGPLAEHAARVTNMYGPTETTVWSMTAPVDGGPVSLGAPILNTRVYVLDTALRPVPPGHSGELYIAGDGVARGYRGRPGLTAERFVADPYGPGRLYRTGDLVRREHDGSFTFLSRLDHQVKVRGFRIELGDIEAALLAHPPVERAAVLMREDRPGDKRLVAYIVSPEGDSPLLRTHLAETLPEYMVPSAVVVLDALPLTPNGKLDRRALPAPVHVARTDGRAPRTPLEERLCALYAEVLGLDSVTVDDDFFTIGGTSLWATRVVVRAAREGISFAIRDLFRARTVARLAPLCAVGAPAGEEPVETALPDVLPPAELAALLAGAEVEEVLPLTPLQDGLVVHSLTTDEDRDVYSVHITLDLTGEVDAERLRGALDTVVSRHPVLRSSVAHEDVSRPVLVVRGRAAVPWRVHDLRGRADRLDTVLRAETAQPFDLASAPLLRATLLRLDEGWRLIVTCHHLVLDGWSVPILLGETLRAYAGGDLGPAPRPYRAHLGWLAAQDHERSAAAWGEALAGVRPTLLGAVQGPAREAVRLESALDAATTTRLEGTARELGVTVNSLVQAAWSVALREVTGQDDVVFGITVAGRPAEVPGVNEMAGLFVNTVPLRARPGSGRTLAELARSVQDDQADLLAHQYLPLVDVQRAAGVSGLFDTVVAFQNYPVDRAALDALAREGGLVAGDADVHDVNHYPLTLTAVPGERLTARLVCRPHLFDPAAARELLDRFTGTLSTLAAAPGTLVGALVPDREPSAAEDARDLAELRGFRFDTADVEAALTAHPDVVRAAAVVREDTPGERRLVGYVVPRRGATPDASALRDALAAGLPDYMVPSVFVTLDTLPPAPGGGVDRRALPVPVLAGAVSREPHTPLQELLCELYAEVLGLGTVGIDDDFFALGGDSILGFRLLSRARARGVSFGFRDMFERRTVAALAEVCSAYEPEAASGRITLPVSAEEAARLAAEPGVETVLPLSPNQQGLLFHHAFDDTGADPYTLQIVLDFTAPLDAGRLGAALDRVLLRHEALRASFRTTAEQRSVQLVHEAPSVPVREAEAADEAAFAALLDEDRATRFDLSRPPLVRAAAVRRAGGGGSLVLTMHHIVVDGWSLPIVARDLFAAYAELGTEPEAAALSGAVQSDSALPGAVPDEAGRARYRDHLAWLDGTDREASLRVWREALAEVTEPSRIATGQGDRVLEPVRQEHVLSEADTAGLAAVARRYGVTVNTLVQAAWAIVLRGLTGRDEALFGVTVAGRPAELPGAGELVGLFINTVPLSVRLDAGERLGDLAVRLGREQSALLDHHHVALGDIQRATGMGELFDTLLSFENYPLDPAEITARARAAGLDLAGARVRDGSHFAISVVVEPGERMRLRVRHQPQLVDEATAQAAGAELLATLRAFVTAPGLPLARLARGEETAPAQAAPAASSPVTLPGLFAAQAARTPDAPAVVAGGESLTYRQLDRRSNALAAELVARGAGPGRLVAVLLPRSVDLMVALLGVLKSGAAYVPVDPSYPAERIAVILQDSAPALAVTADPDLAPAGLATVRPTGAEADALGHTPRPEDAAYVIFTSGSTGRPKGVVVEHRALGAYLARAATAYPDAAGTSLAHTSVSFDLTVTCLYTPLVAGGRVHLAELPDAIGAARPTFLKGTPSHLRLLDTLPEEVSPSGTLVLGGEALRGEMLAGWRAAHPGATVVNAYGPTEATVNVMEFRIEPGEPLADGPVPIGRAFPYARVYLLDSGLRPVRPGARGELYLAGEGLARGYLGLPGQTSHRFVADPFGPAGSRMYRTGDLARLRRDGMIEYLGRVDDQVKVRGFRIELGEVEAAAEAVPGVRRAAAAVRGTTGEPRLVGYLVAPGGVDTAEVEARMRAVLPEYMVPAAFVVLDELPLTPNGKVDRAALPEPAVTAGTAGRTASGALEERLLGLFREVLGRADAGVEDDFFALGGDSIMSIQLVGRARAAGLKFSARHVFEHRTPAALAASLGGEPSRSPLEERLLGLFRQVLGRADAGVEDDFFALGGDSIMSIQLVGRARAAGLRFSARHVFEHRTPARLAAALGAQDGAVPTADAQHGPRSAPLLPLMHRLVTRGRFDQYNQSVTLTLPPTTRAHLAAALGAVVERHEALRMRVADATGFTVAPLAADAATAFADALLTRVAAPADATEDELTALAAEQTAAARDALDPAAGRMLRAVWIDAGDRRTGRLLLVVHHLAVDGVSWRIIVPDLAEAWAAVAGGGRPALAPVGTSFADWARAFTALPADDTPYWRELLTADDPLIGDRRLDPARDLRGDAGRLTLRVPADVTGAVLGTLPAAFHAGPDDVLLTALAAAVPLWRGDRAGLLVDVESHGRHEELVADADLSRTVGWFTVIHPVRLDTADPGAVLAGADAAGDALRAVKEQLRATPGQGIGYGLARHREQAAAAESAGLPDAQIGFNYLGRVRLAGGLAPGWDLAAVGADDAPDVPLSHVVEVTVAAHEGPDGPELVATWTWARALVSDADAARLADLWDSALRGLAAHGDRPGAGGRTPSDLLVHLSHEEIRELEADPDVADLLPLAPLQEGLLFHHQYGDGADDPYISQLRVELTGSLDVARLRAAAAEVQRRHPALRAAFRRTSQGTPVQVVLADPAVDFTTVELRDPAELDAVCAADRGRGFDITTPPLIRWTVASAGDRHTLVATAHHSVRDGWSMPIVMRELMAHYLGDALPQPRPHREHLAWLARQDRTAAEAAWGETLAGLDGGTLLATGPAPAGQEPGRLDLTVDGLDVQGAARRLGVTVNTLVQSAWLLLVARLTGRDDIVTGATVSGRPADLPGAADMVGLFVNTVPLRATLRADEHVGDFARRLQLEQARLVEHHHLGLVDIRRLAGHGELFDTSMVFENYPLDVDALAAVARRAGLEAGAVSHHSVTHYALAMEASPLPGGDGLRLRLHHRTDTLTAEQMGQIGELLPRLLRTVVTAPGTPVGRIPGYAPAALLALGRGPEDAADPRTWPELFLDQVRRTPDAPAVASGARTLTYRDLADRAGALARLLAEAGVGAEQRVGIVLPRSVDLVVALHAVALAGGAFVPVDPAHPAERIAQTLTDAAPVLVLTTSGTALPETGTRRLDVDALDLSGDGLVRPVRAEQAAYVIYTSGSTGRPKGVVVTHAGIPGLARAQKAGFDVDADSRVLQFASPSFDAYVSEVAVTLLAGACLVVAPREELLPGAPLVRTVAEHGVTHVTLPPAALRELRPGDLPTLRSLAVAGEQCPPQVAEVWSAGRRMVNAYGPTETTVCATMSAPLSGFGVPPIGTALHGLEVRVLDAHLQPVPVGVVGELYVSGAGLARGYLDRPGLSAERFVADPFGAPGTRMYRTGDQVAWREDGQLVYVGRADRQIKLRGFRIEPGEIEAAVVAAPEVAASAVVVREDRPGDRRVVAYAVPAPGATVAPEALRARLREVLPDHMVPAAVVVLDRIPVTVNGKLDQAALPAPRYDTTAGRTPGDPVEELLAGVFAEVLGVDRVGPDDSFFDLGGHSLLAMRLVARVSAVLGTELPVRAVFESPTVRELARIAAGGPRATALAPGALPRPERLPLSYAQQRQWFLDRFDGTNSAYHIPIALRLTGRLDEAALAAALDALVRRHESLRTLIAEDEEGPYQRIVGTTLWCEPAPVAREALDEALREAVARPFDLTADVPVRVHLFAVGPDEHVLLVVVHHIAGDGASVPVLARDLVAAYRAHLDGTPLAPAGEAPQYADFALWQRAALGAEDDPGSVLGRQLDHWKAALDALPEELALPADRPRPAAGPHRAGRHRLEIPADLHTELTRVARELKATPFMVVQAAVAALLSRLGAGTDIPLGSPVAGRTHASLSEVVGLFANTLVLRTDVSGDPSFAELVDRVRETDLAAFAHQDVPFERLVEALRPERSAARHPLFQVVVEWGDDGTRALDSLQDLPGLSVEPLQLTVDAAKFDLVWHLRPRHTAAHAPAGIAVDVEYSADLFDAATVASMGDRLVRLLGAALAEPARPVTDLDVLGADERDLLLGDWAYTPAEPTAPLGADDTIVRRFEAAAAAHPDRVAVTGEDERGRPVTLTYAELNARVNRLAALLRERGAAPERFVALALPRVTDLVTAVLAVLKSGAGYLPVDPAYPTERVALLLGDSRPVVTVGTRATVAALGGDATWLALDDEDVVADLAARDTADPEPAAGADHAAYVIYTSGSTGTPKGVVVTHRNVLRLFDATGHWFGFGADDVWTLFHSYAFDFSVWELWGPLLFGGRLVVVPHAVSREPGAFLELLRRERVTVLNQTPSAFHELIRADEAAGGADLALRYVVFGGEALDPARLLPWYERHADDSPVLVNMYGITETTVHVTHRALTADEVRAGVAGAIGVGIPDLGVHVLDERLRPVPAGVVGEMYVSGAGVARGYAHRPGLTAGRFVADPFGPPGTRMYRSGDLARRRPDGSLDYLGRADSQVKVRGFRIELGEIEAVLLAQDQVAQAAVVVREDTPGDQRLVGYVVTDGGTGRALAPALREAAAEALPAHMVPSAVVVLDRLPLTVNGKLDRKALPAPQAPARTAGRAPANPAEELLVDAFADVLGVDRVGVDDSFFDLGGHSLLAMRLVTRVRAALDADLGVRDLFESPTPAALARRAAGVEGTGRPALTALPRTGRVPLSYAQQRLWVLDRLGGGAGGDGAYNIPIALRLTGTVDADRLREALGDVVARHESLRTLVDDRGGEGAEAWLRVLPEARVELPVVRVGADDLDARIQAAASAGFDLTTELPLRARLFTVGPDEHVLLVVVHHIAGDGTSMPVLARDLATAYAARLDGAAPAWEPLPVQYADYAGWQRAFLGEPDGTDTGSEMGRQLRFWSEALDGLPEELTLPADRPRPAVGPHRAGRHTFEVPEELYERVGRVARELKATPFMVVQAALAALLSRLGAGTDIPLGSPVVSRSDEALADVVGFFVNTLVLRTDVSGDPSFAQLVDRVRQADLAAFAHQDVPFERLVEALRPERSAARHPLFQVALSLDSAGGTALAEAGRMPGLTVEPRPVAPSVAKFDLTFTLTERLGEGGRPVDWAGGVEYSADMFDADTVARLARRLVRLLDVLTDRPGARVSAHDVLVDGEREAILGSWLENTAPVAPASLPEAIARQVAERPDAPAVTFGGTTLSYAELDARANRFAHALLARGVAPEARVGVLMERSDTLAVALLGIVKAGCAYVPLAPANPDERLVHLLDQVQAPLLVVDEAGRERAEGLDIRAELVDAGADVSRLPATAPGVPVDPRNLAYLMFTSGSSGLPKGVAICHGDIVQLAADRCWDGVTDRVPLHSPHAWDASILEFWVPLVRGGEVLVVPPGDLDVTDLKALIADSGITSLFLTAGLFRVLGQEIPEAFAAIRQVATGGDVVSGPAVRRILEHAPGLRIVNAYGPTEVTVMALSHRVDAATLDPQAHSVPIGRSLDAMRHYVLDDALRPVPPGVTGELYAAGPGLARCYWNRPDLTSDRFVADPYGPPGTRMYRTGDLARWTADGLVEFAGRADEQVKLRGFRIELGEIESALAAAPGVTACAVLVREDRPGDKRLVAYTVAGPGYDRAELGAHLGRTLPDYMVPAAIVELTELPLTSIGKLDRRALPAPEFGSTGGRTAATTEEEILVRLFAQVLGLPEESVDADSAFFDLGGDSIMAIQLVSAARREGLTITGADVFTHRTVAELARAAAAAQAPGDSEPDEPVGDLPAWPMLHWLAERRVPVDRFNQTTVLHAPAELDLDRLHTLVGALLARHDSLRLKVAVDDPADAATWHVEVPAPDAVRAGDRVRRVDAATLTDDELADVVRQHGEAAVGRLDPGAGAMVEIVWFDRGTRPGLLLVAVNHLAIDGVSWRILLPDLFRAWADILAGRAPDLGSGGTSLRRWAQRNTESAVSPRTLAQLDHWTGTLRHGTPLGARPLDPAVDVLGAARRLRRTLPAGITGHLLTTAPAVVGAGVDDVLLAGLALAEARRRRDPDASVLIDVESHGRERDGASDLSRTTGWFTALYPVLLDTAGTDLDEAFAGGHAAGTVLKHVKELLRAVPSEGLGYGLLRHLNPETAAAFEGLPTAGIGFNYLGRFVAGETGDWAVAADAPRPDGEDPATPLAHAVEINAYVEESADGPRLGATWTYAPGVLTDDEAAALADGWFEALTALAEHAQRPDAGGLTPTDVGLIEITQSEIEQFEDELASDWEI
>CP029788.1|AWT45245.1|5349534_5362152_+|non-ribosomal-peptide-synthetase
MARSNRTVDDILPLSPLQSGLLFHSLFDVSDESTPDIYTVQSTFHLAGPLDAGRAREAADALLRRHASLRVAFRQRKDGEWVQIVAARYKLPWTEIDLSHLPAAEADAEAREATLADREQRFDTGRPPLIRFTLIRLGAESHRLVLTIHHTVLDGWSLPTLLKEYHALYLSGGDARGLPAVAPYRDYLAWLSRQDADASRAAWDAMLDGLTAPSLVAGTAEHTPQDPGRYEFGLTEEQTRALTARARSAGVTVNTVVQAAWALVLAGLTGRDDVVFGVTVNGRPAELPGIESMVGLFINTLPLRVRLRPGLTAGELLGTVHHAQAELIAHQYLGLSEVQHRTGLGPLFDTSVVFENFPFDSAPAVSADSDPLRVVGAESHSANHFPLSLVGMPQETLRFKLFHQRDLFDDTAAAAVADRFLALLDILVGEPGRPLGRIDVIGADETARALAAAAGPEGAASHGVRLPTLPELFTDQAAATPDAPAVRAGDEVLTYRELDARASHVARTLVARGVTPGRTVAVLLPRGIDLVVALLGVAKSGGAYVPLDPEHPAERIAAVLADADPVLALVEPGIDLPGTPTLAVTDEEAASFTAAPRPHDPAYLIFTSGSTGGPKGVVVEHGSVAAYLVRARAAYPDAAGLTLVHSSVTFDLTVTGLYTPLVSGGCAHLAELPEAVGGPRPTFLKGTPSHLELLDTLPAEVSPSGTLVLGGEALRGEALRTWRAAHPDATVINAYGPTEATVNCLEFRIEPGTELADGAVPIGRPFADTRAYVLDAALRPVAPGVAGELYISGVVLARGYLGRPGLTAERFVADPYGPPGARMYRTGDLARRLPDGTFVYAGRADDQIKLRGFRIEPGEIEAVAAAHADVTRAVVLAREDRPGDARLIAWVTPETVDTEALRAHLADALPAYMVPAAIVALPAMPLTPNGKIDRRALPASEETTTALPVQRARRDPREDLVRDLFAGVLGLASVGPDDDFFDLGGHSLLAIRLVSRLRAALGVELSVKHLFRSSTPAALVRSLGEAEEARPALVRTERPERLPLSYGQQRLWFLHRMEGPSPVYNLASALRLTGPLDHDALRAAYADVVARHESLRTVIAEDEQGAHQIVLDDVRPELTHVRCTEDELAELLAEHARHPFDLSADLPLKLFLYELAEDRHELLVLLHHVAGDGWSTPLLTRDLTRAYAARAEGAEPQWRELPVQYADFALWQHRLMGSEDDPDSRASRQLAFWRETLADLPEELALPTDRPRPAVASYRGDNVRITVPAALHRAVAQCARAADATVFMVVQAALAVTLSRLGAGDDIPLGSPVAGRLDEALDDLVGDFINTLVLRTDVSGDPTFAELLARVRETDLAAWSHQDLPFERLVEVLNPARSLARSPLFQTLLAFNNTGGPAGSGQGEARLGRLSVTARGGVGSGVAKFDLAFNLHERHADDGAADGMTGILEYAADLFDHSTAERLAERFVAVLARLVADPAQRVGAVDVLLDGERTAALVLPSTTARTAEDRWFLDRFEQHAARRPDAPAVTAGDVTLSYGEVNRRANALARLLTERGAAPERFVAVALPRTADLLVTLLAVQKSGAAYLPLDTNFPADRIHRMITDAAPAVLVTTAQLLPGLPDVAVPTVLADEADPAGYADHDLGVRAPATGAAYVLHTSGSTGVPKGVVVPRGALDNFLRAMADRCRVTADDRLLAVTTIGFDIAGLELYLPLACGAHVVVAGPDTVRDPEALRAAVTRHGITLMQATPTLWRAATGRDASFLHGVRVLVGGEALPADLAATLTAGARSVLNVYGPTETTVWSTAAEITDPAGIHLGDPIDNTGAYVLDDRLRPVTPGVPGELYLSGSGLARGYLRQPGRTAERFVADPYGAAGSLMYRTGDLVRRTPAGRLECVGRGDQQVKLRGFRIETGEIEAVLTAHADVRAAAVGVRPDASGEARLVAWVVTDLDVLALRGHVSAAVPEYMVPAAFVTLPELPLTANGKLDRKALPDPAETHDTAGRPPRSPQEEILCGLFAEILSRPRISIDDDFFAAGGHSLAAMRLVGRIRSVLDVDLPISVLFEAPTVAALAARLTGAGASRAPLTAGERPERLPASPAQQRLWFLNKFEGSGSATYNVPVVLRLSGALDEQSLAAALTDVVTRHETLRTVFAEDAEGPYQVVLDPRPVPTAQRPAAEEELPALLTEAARTGFDLAADLPLRAHLFALAPDEHALLLVMHHIAGDGGWSVPLLVKDLATAYAARRSGEEPGWQPLAVQYADYTLWQREVLGSADDPDSELGRQLAHWREALADLPEELTLPTDRPRPPTGTGQGADLRFHIPAELHAELESLAQKHRASLFMVVQAAVAVALSRLGAGEDIPLGTPSAGRVNEALDGLIGFFVNTLVLRTDLSGDPTFAEVLDRVRGTSLNAYAHQDVPFERLVEALNPDRSLGRHPLFQTMVTWNNAAQDATGRLAEDLPGLRMRVGEVDARVATFDLLFAFSDLRTERGAPDGLAVRLEYATDLYDPATAELFVSTLTTVLASVAADAERPVHRIDVLPPAARARLLGTADGPEPRPYRPLARLLAAQAERTPDTVAVTDEHGSLTYRELHERARALAVELLGLGLGPEDRVAVALPRGTDLAVALVATLTAGAAYVPVDPDLPSERVALILADTAPGALVTTARTAARLPAVGVPQVLVEVPWPPADATQAFPEALPGHPAYVIYTSGSTGRPKGIVMPHGALANLLDWHERAVPAPPGTVVAQFTAVGFDVSVQEILSALLTGKTLAVVPEDTRRDPRELAHWLADHEVAELYAPNLVIDGVLEAARECGADLSGLRHLVQAGEALTLREPVRAHHAGAPTRLHNHYGPAETHVVTAWTLPADPAHWPDTPPVGRPVDGVGVRLLDAGLLPVPPGVVGELHLSGVALARGYLGRPDLTAERFVADPYGPPGSRMYRTGDLARTTPDGDLVYVGRADHQVKIRGFRVEPGEIEAALTAHEDVARGAVVVREDTPGDKRLVAYVVPRQGGSPSASALRSHLAGLLPSHMVPAAYVLLDALPLTRTGKLDRAALPAPAPDLAAVRAPRTAREEALCGLFAEVLGRPVVGVDQDFFELGGHSLLATRLVARIRTVLGVELAVRGLFEQPTPGGLAALLDEADGARPAVTRRERPERIPLSPAQRRLWFLHRLEGPGATWNMPTALRLTGPLDEEALGAALADVVTRHESLRTVFAEESGSGHQVIRTPEETLAALGTLRAADVAPDRLARELSAAAARPFDLAAEPPLRATLLRTGPQEHVLLLVVHHIATDGWSAPVLARDLTEAYTARHAGQAPSWAELPVQYADYTLWQRDVLGAEDDPDSVAARQLAYWKRALAGIPEELALPADRPRPAVASHRGDTVPFHLPADLHAGLARLAGENRASLFMVVQAAWATLLSRLGAGEDIPVGTPIAGRTDEALDDLVGFFVNTLVLRADLSGDPSFTQLVDRVRETSLGAYAHQDVPFERLVEVLNPARSLARHPLFQTMLMWNNNDDRTAAGAADGFAGLTAEPLPLGTGVAKYDLTLALKEAYAADGGAAGLHGHLEFATDLFDRSTAESFVERFTRVLRTVVERPGIPVADVDVMAPGEREKVLGEGNDSDREVPDATLTRLFADRVAISPEACAVVFGDLALSYRELNARANQLAHWLAERGAGPERLVAVALPRSPELLVALLAVLKTGAGYVPVDPDFPEERIAYILRDADPVLTLTGELLAGTDLSAYGFDDPVVRGGSARNTAYVIYTSGSTGRPKGVTVTQAALVNFLTAMQDRFALTEYDRLVAVTTVGFDIAGLELFLPLLHGAQVVLAPREVVRDPAALASLVDDAGATLMQATPSLWQALAEAGGVPAGLRVLVGGEALPAPLARTLAGGGRTVTNLYGPTETTVWSTAADVTGSGGVTIGGPIANTRLYVLDGRLRPVPAGVAGELYIAGAGLARGYHRRAGLTSERFVADPYGPAGTRMYRTGDLVRRTASGDLEYLGRTDFQVKVRGFRIEPGEIESAVLGHPDVVRAAVVVREDSPGDKRVVAYVVHGPDGSPDGDVLRKHAAVSLPDYMVPSAFVVLDELPLTPNGKLDRAALPAPALGALGEGRPPRTEQEEILCGLFAEVLGVERVSIDDDFFALGGHSLLANRLAARVRSALGKEMSIRVFFANATVAALAESLATATATTTRPALRRRTGTKENS
>CP029788.1|AWT45246.1|5362732_5363299_-|hypothetical-protein
MRVSALWPRTVRPGSSAAAVRAWRWSLSFQVSRVWNRGWRAIARGGLSTSTSRSKGTSWCSYAARSASRTRVSSSRKVGVPDRSARSTRVFTKNPTRSSRASSVRPAIGVPIGTSVLPLSLDRRAARAAWTTMNRLARFSRASSTRRACTSAGTARGSVSPRWVAVAGRGRSVGRPSSSGRPARVSRQ
>CP029788.1|AWT45247.1|5363793_5373699_+|hypothetical-protein
MCPWTPSSRRTGSRTSSRTPHPSCRSPRTSSRRPTSPAAPPRIRRSRGLGDTTAYVIYTSGSTGRPKGVAIPHAPLVNFLTAMQDRFALTAGDRLAAVTTVGFDIAGLELFLPLLHGAQVVLAPREVVRDPAALITLVRESGATLMQATPSLWHAMAEAGGVPEGLRVLVGGEALPAALARTLAEGGRPVTNLYGPTETTIWSTAADITGDVTIGGPIANTRLYVLDAGLRPVPAGVAGELYIAGAGLARGYHRRPQLTSERFVADPYGPAGTRMYRTGDLVRRTASGDLEYLGRTDFQVKVRGFRIEPGEIETVIADHPDLARAAVVVREDSPGDKRIVAYVVPVGGSGGPHHALLRKYAAASLPEYMVPSAFVVLDELPLTPNGKLDRAALPAPSYGLDQAGRAPRTPQEEILCGLFAEVLGVPRVTIDEDFFSRGGHSLLALRLMTRVRATLGVDLPVRQLFETPTVAGLAALLGSGGTARPALGARPRPERVPVSFAQRRLWFLNRLEGPSAAHNIPTTLRLSGSLDREALAAALADVVTRHETLRTVFAEDEQGPHQVVLSPEEARPALRVTRTDEAGLAEELRRAARRGFDLQAEPPLRAHLFELDQDEHLLMLLVHHIASDGGWSTPVLVRDLTTAYAARCAGEAPAWTPLPVQYADYTLWQHEVLGSEDDPESLVSRQVAHWSETLRDLPEELPLPTDRPRPAESSYRGATVPVTIPAELHRRLEHLARENRASLFMVVQAGLAALLAKLSGTTDIPLGTPIAGRTDEALEDLVGFFVNTLVLRTDVSGDPTFTDLVVRARGTDLAAYAHQDVPFERLVEVLNPPRARGRHPLFQTMLAFNNVDQKAALGEGRLPGLTVSGDKVGTGVAQFDLLLAVADGRADDGTPAGITGHLEYSEDLFDRSTAETLVRRLTLLLDALAEQPDLPLSRVGVLEDDERARILGSWLDTAAEVPHATLPALFTAQAARTPDAPAVRHGEHTLSYAELDARSSRLARLLVAHGAGPERFVGIALPRTELTLVAVLGVLKSGAAYVPVDPGYPADRQAHLLRDAAPALVLTVRDVAGGLPAEGAELLVLDDPATEAALAATSADEVTDAERRAPLLPSHAAYAIYTSGSTGLPKGVVVPHENVADLAAWALAEFGAEGMAHVVASTSLNFDVSVFEMFGPLLSGGSVEVMRDVLELGDPAHAGRPVSLISGVPSAVAQLVAEGGPLVSAREVVLAGEAVSARDANDVVRAVGAERFANIYGPTEATVYAAAWYSREEITRVPPIGAPLRNTRLYVLDAALQPVPVGVPGELYIAGPGLARGYHRRAGLTAERFVADPHGTAGTRMYRTGDLVRWTADGNLDYLGRTDFQVKVRGFRIELGEIEAVVLGHEDVARTAVLVREDRPGDKRLVAYVVPAAGRDVDRARLRAHVAAALPDHMVPSAFVALDALPLNPNGKLDRAALPAPEYGPAQTGRAPRTPQEAILCGLFADVLGVPRVFIDDDFFALGGHSLLATRLAGRIRATLGEELTIRQFFETPTVAGLAAALGAGGPARPPLRAGARAARVPLSSAQQRLWFLGRFEGRSHTYNVPTALRLAGAVDREALAAALADLALRHETLRTVFAEDAEGSYQTVLAPEDARPVLAVRETTEEQLTAHLEQEARYAFDIGAEPPLRATLFTVGPDEHVLLVLVHHIATDGWSMPLLVRDLTTAYAARCRGAEPGWQPLPVQYADYTLWQRDLLGSEDDPASLAARQLAHWRETLSGLPEELDLPTDRPRPAVSSYRGDLLDVEIPAAVHARLGALARDNNASLFMVVQAALAALLSKLSGSTDVPIGTPIAGRTDEALENLVGFFANTLVLRTEVAPDEPFTALVAKVRETDLTAYAHQDVPFERLVDVLNPVRSMARHPLFQTMLTFDNVAARDTADPAHAGPMPDVAASGQHVGTGVARFDLMFRLGERHTADGTPGGIAGVLEYAADLFDRDTARRLADRLVAVLTAAADRPDAPVGALDTLPESDRGRLLVDWNDTARELPSEHLPALFRAQAARTPHAAALDFEGRTLDYRELDLRSDRLAHALAARGVGAEDLVAVALPRTDAMVVALLAVLKAGAAYVPIDPEYPADRVAYMLDDAAPALLLTDRDTAAGLPAQTTVPRLVLDDTRTADELAAVTETGLDRVRRIPAPHPEHPAYVIYTSGSTGRPKGVVVGHENLLNLLNAMQGQLRLTAGDRLLAVTTIGFDISNLELWTPLAHGARLVLAARETVKDPVALARLVEESGATVLQATPTAWQGLVATRPDALRGLVKLVGGEALPGPLGRALHDLGGSLTNVYGPTETTIWSTSALLDATTCERPPIGRPLDNTRVYVLDAGLRPVAPGEAGELYIAGTGVARGYLNRPGLTSERFTADPFGPAGSRMYRTGDLVRWGAEGDLEYIGRTDHQVKVRGFRIELGEIEAALTTQEEIAQAVVVAREDTPGDKRLVAYTVPDRGDGSRDTEAEEHQVREWEEAYDALYGEPGSDTFGEDFGIWRSTYTGDPIPLEEMREWRAATVERILAGRPRRVLEIGAGTGLILAHVAPHCESYWGTDLSASVIERLGAQVAGRPELADRVTLTVQPAHDTDGLPRGAFDTVVLNSVVQYFPSADYLAEVLGKVRELLAPGGTVFVGDIRNLRTLRALRGAVALTGQDTPAEGAGRDALRAGVERAVAREKELLLAPEWFTGLPGVSGVDLRVRRGVHHNELTRHRYDVVLRTAPADEAADTADAPVLPWAGAEHLAAELAAGRPALRVTGIPNLRLTAEVTGVRALFDEDAPPADAVDPEDLYALAERTGHRVAVTWSATDAEDGALEALFVRGDGPVDLALAGSYRPAPGPDARPRANDPASRRDDTGLGPVLRDRLKETLPAHMVPAAVVVLDALPLTPNGKVDRAALPVPDFGTHGEGRAPATPREELMCALFAEVLGLARFGLDDNFFESGGHSLLATRLVGRVGAVFGVEVPLRRLFQAPTPAALLRELEPEGAHDGHGVLVPLRASGSGTPLFCVHPAAGLSWVYLGLLAHLGPQYPLYGLQARGTDGTGGLPASIGEMAADYADQITATAPEGPYRLLGWSVGGTVAHAVAAELERRGERVELLAVLDAYPVADAAGGEPPSEATIIAHNLRAIGFDFHESELTPETFPIERYRAFLARENKVMARFEEHEILAMKDVYVNNTRLMWSHTPPRFGGDVLFVTAERDRGALARERGHQAWAPYVGGEIVNHDVDSDHEGLMTRPGAIAHVGRVLAGRLAVLDEAAAGARRTGVDAPGRLSA
>CP029788.1|AWT45248.1|5373695_5374970_+|MFS-transporter
MTAPAETAVAAPPPLRRNRDFLLLWTGNWLQFFGSRMSTVCYPLLALQISGGSAEAVGLASAAAVLPQAVVQLPAGVLVDRWDRRAVMRWCAAGRFLALAAVGTALALGVLGMELLLGLIAVEVSLAIVGSLAERAAVRTVVPGEQLPAALTQNEARGRIAGLLGGPAGTVLYTWTRWSPFVAATLGALIAAVNLRFIRADLSTQSPHERRPLHRDLADALRWLCRQRALRAMLPVVTVATALLQVVMQGLVVILVKEQGLPEATLGLVLGISGCGGLLGALTGRWFMARLPLSVLLIGGLTLWAALMNAMAWATGPVQLGVLFALMNIIGAVFGVATAVYQVTVTPQELQGRVAALSGLVVALGTTGGAYCAGKLLQAYRGLLSLLVAAGLMAVTAAVAALVPAVRKARIPDAAARPGTRAPS
>CP029788.1|AWT45249.1|5375036_5376077_+|LLM-class-flavin-dependent-oxidoreductase
MDLSLFYFAHDSTAPGQAGRYELLIEGAKLADRSGLAAVWTPERHFDPFGGAYPNPAVLGAAVAMCTRRIGIRAGSVVAPLHHPARIAEEWSVVDNLSGGRAGIAFASGWNTVDFALRPENHADRRTLVRDIAEDVRRLWRGEALATTDGLGRPVDIRAYPPAVQSELPVWLTSAGGVDTFRAAARMKAGILTHLLGQSLDEVAAKIAEYRRVAAEEHDGWSGHVVLMLHTLLGDDLDQVREQVREPFTNYLKSSANLTAKSFTGKDMDLSQLNADDMDYLAARAFDRYFETGGLFGSVERAAELLPRVAALGVDEIGCLVDFGVDSRAVLDGIDKLGKLNEIISR

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Crispr_ID: CP029788_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_13

6917025-6917099

Orphan

Consensus_repeat	Method
GCGGGGCGGCCACCGGCCGGGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029788_13

>merge|CP029788|13|6917025-6917099|CRISPRCasFinder
GCGGGGCGGCCACCGGCCGGGAAACCATGTGCCTCCCGGCAGAGGGGCGGCGCGGGGCGGCCACCTGCCGGGAAA

>CP029788|13|13|6917025-6917099|CRISPRCasFinder
GCGGGGCGGCCACCGGCCGGGAAA	CCATGTGCCTCCCGGCAGAGGGGCGGC
GCGGGGCGGCCACCTGCCGGGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT47881.1\|6915234_6916218_+\|NADPH:quinone-reductase	unknown	unknown	gnl\|CDD\|176205
CP029788.1\|AWT46422.1\|6905048_6906518_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|277324
CP029788.1\|AWT46425.1\|6911637_6914175_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133062
CP029788.1\|AWT46429.1\|6919730_6921047_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270303
CP029788.1\|AWT46432.1\|6926366_6926699_-\|deoxyxylulose-5-phosphate-synthase	unknown	unknown	unknown
CP029788.1\|AWT46431.1\|6924447_6926346_+\|glycoside-hydrolase-family-16	unknown	unknown	gnl\|CDD\|185693
CP029788.1\|AWT46428.1\|6917419_6919507_+\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237358
CP029788.1\|AWT46423.1\|6908789_6910091_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293737
CP029788.1\|AWT46420.1\|6903383_6904532_+\|Tat-(twin-arginine-translocation)-pathway-signal-sequence	unknown	unknown	gnl\|CDD\|366542
CP029788.1\|AWT47882.1\|6922076_6922916_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
CP029788.1\|AWT47884.1\|6926862_6927261_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT46430.1\|6922945_6924304_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
CP029788.1\|AWT46426.1\|6914567_6914894_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198080
CP029788.1\|AWT46421.1\|6904591_6905059_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP029788.1\|AWT46433.1\|6928512_6929070_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP029788.1\|AWT46427.1\|6916321_6917017_+\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|313370
CP029788.1\|AWT46424.1\|6910087_6911641_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224720
CP029788.1\|AWT47880.1\|6906514_6908869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211415
CP029788.1\|AWT47885.1\|6927352_6928405_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224315
CP029788.1\|AWT47883.1\|6921052_6922045_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT47881.1\|6915234_6916218_+\|NADPH:quinone-reductase	gnl\|CDD\|176205	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	6.38597e-160
CP029788.1\|AWT46422.1\|6905048_6906518_-\|hypothetical-protein	gnl\|CDD\|277324	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.49799e-09
CP029788.1\|AWT46425.1\|6911637_6914175_-\|hypothetical-protein	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	1.6164e-62
CP029788.1\|AWT46429.1\|6919730_6921047_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.49705e-68
CP029788.1\|AWT46431.1\|6924447_6926346_+\|glycoside-hydrolase-family-16	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	2.27142e-74
CP029788.1\|AWT46428.1\|6917419_6919507_+\|elongation-factor-G	gnl\|CDD\|237358	PRK13351, PRK13351, elongation factor G-like protein.	0
CP029788.1\|AWT46423.1\|6908789_6910091_-\|hypothetical-protein	gnl\|CDD\|293737	cd16013, AcpA, acid phosphatase A. Acid phosphatase A catalyzes the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at low pH. AcpA hydrolyzes a variety of substrates, including p-nitrophenylphosphate (pNPP), p-nitrophenylphosphorylcholine (pNPPC), peptides containing phosphotyrosine, inositol phosphates, AMP, ATP, fructose 1,6-bisphosphate, glucose and fructose 6-phosphates, NADP, and ribose 5-phosphate. AcpA is distinct from histidine ACPs and purple ACPs, as well as class A, B, and C bacterial nonspecific ACPs.	1.28616e-83
CP029788.1\|AWT46420.1\|6903383_6904532_+\|Tat-(twin-arginine-translocation)-pathway-signal-sequence	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	8.43368e-16
CP029788.1\|AWT47882.1\|6922076_6922916_+\|ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.15217e-77
CP029788.1\|AWT46430.1\|6922945_6924304_+\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
CP029788.1\|AWT46426.1\|6914567_6914894_+\|hypothetical-protein	gnl\|CDD\|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	8.16469e-15
CP029788.1\|AWT46421.1\|6904591_6905059_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.96396e-19
CP029788.1\|AWT46433.1\|6928512_6929070_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.33929e-11
CP029788.1\|AWT46427.1\|6916321_6917017_+\|nucleotidyltransferase	gnl\|CDD\|313370	pfam10127, Nuc-transf, Predicted nucleotidyltransferase. Members of this family of bacterial proteins catalyze the transfer of nucleotide residues from nucleoside diphosphates or triphosphates into dimer or polymer forms.	1.2858e-17
CP029788.1\|AWT46424.1\|6910087_6911641_-\|hypothetical-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	2.34939e-20
CP029788.1\|AWT47880.1\|6906514_6908869_-\|hypothetical-protein	gnl\|CDD\|211415	cd11574, GH99, Glycoside hydrolase family 99, an endo-alpha-1,2-mannosidase. This family of glycoside hydrolases 99 (following the CAZY nomenclature) includes endo-alpha-1,2-mannosidase (EC 3.2.1.130), which is an important membrane-associated eukaryotic enzyme involved in the maturation of N-linked glycans. Specifically, it cleaves mannoside linkages internal to N-linked glycan chains by hydrolyzing an alpha-1,2-mannosidic bond between a glucose-substituted mannose and the remainder of the chain. The biological function and significance of the soluble bacterial orthologs, which may have obtained the genes via horizontal transfer, is not clear.	1.66562e-25
CP029788.1\|AWT47885.1\|6927352_6928405_+\|hypothetical-protein	gnl\|CDD\|224315	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones].	1.24796e-06
CP029788.1\|AWT47883.1\|6921052_6922045_+\|ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	4.79886e-66

>CP029788.1|AWT46427.1|6916321_6917017_+|nucleotidyltransferase
MTAVRNILLSGVVGSTAYGLAHEGSDIDRLGLFAAPTEDLHGLHRPAESHVGTAPDRTLHEAAKWCRLALGGNPTVMELVWLPEELYEVRTPLGDELIGIRTSFLSARRVRDAYLGYATQQFRKLISRGATDEASRRTAKHARHLKRLCTQGFELYATGRLTIRVDDPDAYHRFGEQVAADPATAEPLLRRFETAFDETPSALPDHPDERPAEAWLRRVRRRFYDVPGATA
>CP029788.1|AWT47881.1|6915234_6916218_+|NADPH:quinone-reductase
MRAVVLDEPGPVTRLHLRELPVPEPERGWVRIKVEAFGLNRSELHTRLGLAEGVTFPRVPGIEAVGTVDADPDGLLPPGQQVAALMGGMGRVFDGGYAEYTVVPRAQIVPFRSDLPWATLGAVPETLQTAYGSLTTGLDLRAGQTLLIRGGTSALGLATAALAKDLGATVLATSRRPERLDDLKRQGVDHPLLDDGDVAAQVRRLLPEGVDAALELVGTPTLPDTLRATRVHGTVCFTGMLSNEWTVPDFYPIGYLPTGVRLTAYGGEASDLPAPVLQTYLDRIAAGEISLGPVHTYALDDIRTAHRDLEEGRRVGKLVGLTGRPSA
>CP029788.1|AWT46426.1|6914567_6914894_+|hypothetical-protein
MAGMPLDEPPGVEPVAPRDHATALLEALRAVFALVDELEALRTENRQLKEALEGRALIERAKGMLMAVRGCDEGTAFQLLVALSRKQGRKVRAVAADMTTGGAPLPLP
>CP029788.1|AWT46425.1|6911637_6914175_-|hypothetical-protein
MSRGALMTHVVPSRPAARTGADGPPVPEPTDGGPAVSNPADGSPAEPDAVPDPADGIPAVLELGGGGGPAGPPRLTVVVPTRDERESVPLLLDRLGPALSGLGAEILFADDSDDDTVTELTALAPRCPVPVRLLHRPPGTRGGGLSGAVVAGIRAARGGWVLVMDADLQHPPQAAAVLARTAMREGVDIAVGTRYAGTGRSGGLAGAGRQATSSTATRLVKAAFPRRLATVSDPLSGLFAFRRDAVDPALLRPVGFKILLEILVRHPGARVAEVAYAFAPRQAGRSKASLREGLAFVRHVARLRHSVAGGQRQLARMAAFGLVGASGIAVNTAALWLFFEVLGLHHLLGAALATQFSTAWNFALTDTAVYRRGHRRGRRPGRAARFFALNNLLLLARLPLLQWLVLAGTGVLTANALTLVLLFALRFLVSDRLIYRAGEAKVRRRDPVKLLVDPDAAAAPPPHRRRSGYLPYRYDVAGTVTIGSQIRLPELEFFRAQWVPDADVDIAVRVGDVGRRRPRGRAALTEDHSGSAALRYEEHLGRLGANFRVRLGPPITVEVGPLLARSPHVVYTNVVEALLRFVLISRGRMLLHSACVELDGRGVMLSALTDTGKTATVLRLLREHGGRFLSDDMTVVDASGRAVCFPKPLTISAHTLRAVHAEDLTRGEWRRLALQSRLHSKGGRSIALLLSRFNLPIMGINALTQILVPPPKYSVDRLVPCRLGSSTEVKDLFVIERGAPDLYDLDPAEALERMLANTEDAYGFPPYRHLAPALRVGGLDHAELRAREREILAGFLSGVRTRVLASDCFGWADEIPRLLAGEETAAPVRTAEAWPRWDLRTFPAA
>CP029788.1|AWT46424.1|6910087_6911641_-|hypothetical-protein
MTDRSVLPAGAPRTAPAPTPSGAGVPAALPLAAVLLLAAGLRLWRLTATGFNSDEAVYTGTAASLAGDEQLGALFPVFRAHPVLFQSLLSLALRIHGGDGTARAVPALLGVATVAVTYALGRRLYGRAAGLVAALLLAVMPYHVVVSRQVLLDGPMTLCATGTLYCVVRYAESPAPRWLMAAGGTLGLTVLAKETSLVLLGSLYAFFALTPAVRTRGRALLPALAALAVVALAHPLSQAVSGHAQAGGSYLLWQMFRRANHPYDFYVREVPWSMGPLAVLAAGAGLVWLRRENTWRERLLVCWVAVPALFFTVWPVKGFQYLLPAAPVCAVLAARTLTGLPRTLRAPAQASRAGAVRRAVAVVAVAVVAVSLAVPAWARIPPQTSTRFLAGTGGLPGGREAGLWVRAHAPDGARLLAIGPSMANVVQYYGLRPVSALSVSPDPARRNPSYRAVPNPDRALRDGDFQYLVWDAYTARRTPFFTAQLERLTVRYHGAAVFRVNDLRGDPVVVVYRVRAS
>CP029788.1|AWT46423.1|6908789_6910091_-|hypothetical-protein
MRAPGAALLLALLLAAVGGGPAAARESAGGAAAGPVGGTRTPVQHFVYVLQGDRTFDHYFGTYPGADGLTAGLRQPVEPERPERGTVAPYPLHGTAPAAPGAGPRLVRQQHDGGRMDAFVAAFTRQGRDGRLAMGHYDRRDLPFHWNAADRYELFDHFFASSLDGTRANRAHWVTGTPELTGPTVFDRLEEAGVSWKFYVQNYDPRATYRAAGGLSTQPLRVPLLAVPRFVDDPRLRAHIVDLGTYYRDLEAGTLPAVAFVAPSGAAERSARSVAAGQRLLRELTTQLMVSRYWPSSALLWSYDGSGGWYDHVRPPTGLGLRVPALLVGPYVPRGVVQHGRFEAASALRFVVENWRLRPLGGRAGTARSLADAFRFDAPPRRAELIPDGGPGTAALPVVRRPRPGPVYAIYGMASAVVAGLLWGAVRPRWRTS
>CP029788.1|AWT47880.1|6906514_6908869_-|hypothetical-protein
MRSTEWRPRSSRACCGGRCGPDGVPREPAAAARGGGGGGGGGAGADAGRGGDAGDRHGAHHATTRGGAVRLRRAVGRDRRGRRGAVHRRARPRQAHAGRRRRRAVLRRPPVLLRPVGRAARSRPGVPAHGRRAAAAPRLHGHRGVHGPVPGDGALRRPGRDGRTARAGAVCDRARRHRADAAAAGGAAGVAGRAAAGVPAQCPRQPGDRLQPAVGGRPRREHRGRRTAAVRPRAGASGRLHHALPRSDRVGAGRGVRVGRGPRGAGDAAGRVGASGAVRRGPHGDAAGPAARAVPRRGDGRAGAAGGPAGAAVPDTDGAGPRGQPRGPGPRGRHGPAVRGGPAAGRAAAAGRPGRCGMRERDGGPAERAAAAGRTGRSRMTGATAAVRGGRRVWVAVLLLLLVSVGAPPSGGGAAAAVPAAGGARPPLLAYYYQWFQRSSWQRAKTDAPRLGPYSSDDASVVRTHIAWAKAAGIDGFVVSWKSTRVNDRRLDLLFAEARAQRFRVAVIYQGLDFHRRPLPVARVAADFRLLRDRYAADPAFFRIGGRPLTVFSGTWEYAAADVARVTGPVRDRLMVLGTEKNPAGVRRVAAATDGDAYYWSSVNPGTNDRHTAKLRAMAAAVHAAHGCWMAPFAPGFDARLVGGTRSVPRSGGRTLRAEYAAALASDPEVLGLISWNEFSENSHVEPSRAYGTQALDTLRELRGMPAPPAGSAPSGAARHTSPGYGPGLLRLAGCLALLVGAVAVLGRRGAGKRGGGGSRGRDGSQDRDGGGGRGAGSRRERRA
>CP029788.1|AWT46422.1|6905048_6906518_-|hypothetical-protein
MSRPPRPRRVRGALCALALGTGAALAFAPAAHADLPGAEPQLTRAPYLSDPTTASMQISWATTTQSRGFVRYGPPGDCAARTATSASLGSPITVGTAREYATSVTLTGLSPDTRYCYRVYTAAGTDLLGTLPTPSFTTPEPAAAAGPFTFAVLGDTGETTDSGVNDGSVNVHQANVLDGIARSGARFVVQTGDNTHPGTSQTQYGDLAQTGPDVSAWFGPSYWAQPGMRVPLVGIVGNHSMTATYLAVWRQQSLAAASGGVWAMADYPSYLGSAAVSYPTTYYAFTTGGIRFYLLDTAWGNSNTGAATGGSCGAHCAIYEQDAHAHWQDASAEHAWLRADLAAHPGVPKFAFFHFPLRSDSASEPGDTFLAGLEQTLLEGGVDLVFNGHSHVYQRNSAGDGRIVSYVTGGGGATVHSVGENGCSAADAYAVGWSYARDHGSACGSAPVPVDDAQVYHFLKVSVDGTAVTVAPTDSLGHTFDVQTYTVTP
>CP029788.1|AWT46421.1|6904591_6905059_+|MarR-family-transcriptional-regulator
MPRDEQPLASDVRLVHLLHAAHTRLTRVSAAALAPHGVDGHDLAVLAALADGAPLSQAQTARRLGLDRTTMAALLDGLEDHGLVRRRRCTEDRRRNLVELTPDGLECLRRAERAHRAAERRFLAPLDEETATTLVRALRALTATDGAPVSAPVME
>CP029788.1|AWT46420.1|6903383_6904532_+|Tat-(twin-arginine-translocation)-pathway-signal-sequence
MTDLRTSDEPLRRTLGLDRRRFLSTCTAVAAGAIAAPVLGAAPVHAATAPAAEPTGTGHALVPADRRGIILYTVRDAIGRDPLSTPLPSGFRAVFEQLARFGYRQVEFAGYGQHANAPGGASLESVAGARLLRGWLDEFGLRAQGNHGFIPPSWPLTTADLDTFKRHLEIANILGMAHMGTGGDPTSSSYKADWDVAADKWNTLGEIARRAGIKLYTHNHDAAYNFLLDGGPLDAQGRPTRSSGIRKLEYFLTVTDPQLVWLEMDVFWAHVAQYKFRAYTAHDGSAQTNVFDPAGLVERYDKRYPLFHAKDGVTNTTNGMGYDMVPFGTGVIDYTTFFSRVGHRNYHNPMVEQDNAPSATDPAQSLRHARIGYDNLARLRRR
>CP029788.1|AWT46428.1|6917419_6919507_+|elongation-factor-G
MRTTNTFDRTVAHPLAAVRNLGILAHVDAGKTTVTERILYATGTTHKRGEVHDGTTVTDFDPQERDRGITIFAAAVSCAWDGHRINLIDTPGHVDFADEVERSLRVLDGAVAVFDAVAGVEPQSEAVWRQADRHGVPRIAFVNKLDRAGADLDAAVASLRERLHPAPLVVQLPIGAEDAFTGVVDLLEMRALTWADGQDGMSAGPVPPELRAEAGRRRRLLEEQVAELHAGALEEFCATSRLSVPTLRGALRDLTGSGEGVVVLCGSAYRNRGIEPLLDAVVAWLPSPADRPPVDGMHDGVVQRRPADPAAPLAALAFKVQATPTGRLTYLRIYSGTIEKGDTVWDAGARRTERVGRILRVRADRHAPLERAVAGDIVAVVGLKAARAGSTLCAPDAPLVLEPPNVAEPVVSVAVEARRATDTERLAGALARLAEEDPSLVVRTDAETGQTVLSGRGELHLEVAAEKLRRDHGLEVNVGRPQVSYRETVARGVTGFVHRHVKQDGGAGQFAHIVLDVEPLDAGSGFVFRSAVTGGRVPQEYVRAVEAGCRDALAEGPLGGHRVTGLRVTLTDGSTHVKDSSEQAFRTAGRFGLREALRACALVLLEPVAEVAVTVPEDALGTVLGDLAARRGRVTGSTSRAGTATVTATVPLAELFGYATRLRSRTQGRGTFTARPAGHAPAPAATDTAAASATR
>CP029788.1|AWT46429.1|6919730_6921047_+|sugar-ABC-transporter-substrate-binding-protein
MRSIRAAATGAVTLSLVLAASACGGGSSTGGGSNDSPKTLTYWASNQGASIEIDKKVLQPELDKFEKQTGIEVKLEVVPWSDLLNRILTATTSGQGPDVLNIGNTWSASLQATGALLPWDAQNFSKIGGKDRFVDSALGSTGVPGQDPAAVPLYSMAYALYYNKQIFADAGIAKPPATWAELVADGKKIQAKGKQVLGAEGANVSENIHHVFVFAKQHGADFFTADGKPDFTNPKVVDAVKQYVDLMAKDKAIPAGNAEYAQNQSVSDFAKGKTAMLLWQSASANLKSQGMSEDAYGIAPVPVQSGTPGAGTQVNSMVAGINLAVFKNTDNLDGAAKFVKFMTSDEEQKILNKAYSSIPPVKTAQADAAFTAPANAVLKDTLARSAAALPQVPDESQFETAVGTAVKELFADAAAGRAVTTESVKAKLEKAQQQMPAK
>CP029788.1|AWT47883.1|6921052_6922045_+|ABC-transporter-permease
MTTTAAEPAVRKNSPGAAPSGTPRRRTGRIRRIGLPYLLLLPALVLELLVHLVPMVIGIVMSFKQLTQFYIRDWGTAPWSGLDNYKVSVDFDAPVGEALLHSFLVTVGFTLLSVGLCWLIGTAAAVFMQDTFRGRGLLRTLFLVPYALPVYTAVITWVFMFQHDNGLVNHVLHDQLHLTDEPSFWLIGDNSFWALLTVSVWKGWPFAFLIVMAGLQNIPGELYEAAALDGAGMWQQIRRITLPSLRPVNQVLVLVLFLWTFNDFNTPYVMFGKAAPQAADLISVHIYQASFVTWNFGTGSAMSVLLLLFLLLVTGVYLAVTSRGRRTADA
>CP029788.1|AWT47882.1|6922076_6922916_+|ABC-transporter-permease
MAPPRSFLWARRVFLTLLTGFVLLPVYVMVSSSLKPLADVSGTFRWLPSGLTIRPYIDIWSTVPLAKYFVNSLIVAGAATVCSVVIAVFAAYAVSRYDFRGKRVFTVTVLSTQMFPGILFLLPLFLLYVNIGNATGIALFGSRGGLILTYLTFSLPFSIWMLIGYFDSVPRDLDEAALVDGCGPLGALFRVVVPAAVPGIVAVAVYAFMTAWGEVLFASVMTNDTTRTLAVGLQGYSTLNDVYWNQIMAASLVVSVPVVAGFLLLQRYLVAGLTAGAVK
>CP029788.1|AWT46430.1|6922945_6924304_+|beta-glucosidase
MTIDFAALPHDFLWGTATSAYQIEGAVAEDGRSPSIWDTFSHTPGKIDGDDHGDVACDHYHRWREDIALMRQLGTDAYRLSIAWPRVVPGGEGPVNPKGLDFYDELIDGLLEAGITPSVTLYHWDLPQVLQDRGGWPERATAEHFAAYAAVVAERLGDRVTHWATLNEPLCSAWIGHLEGKMAPGLTDLTAAVRASYHLLLGHGLATQAIRAAAPGAQVGIVNNLSTVHPATPRPEDVAAARRMDGHTNRWWLDPVHGRGFPEDMRELYGVDLPEKDGDLELIAAPLDWLGLNYYFPMTVADDPAGPAPHVRSVRRPGVPRTGMDWEVDATGIEDLLMRLTHEYRARRIYVTENGSSYPDVVRPDGTVDDPERQEYLTQHLAACARAARRGAPLAGYFAWSLLDNFEWAYGYDKRFGLVHVDYRTQKRTIKGSGHHYAEIIRAHRDRTARAA
>CP029788.1|AWT46431.1|6924447_6926346_+|glycoside-hydrolase-family-16
MTVRTPRTRRTPRVLLTALAALALLAAGPALTAPAAAAPTAAAAGWDTDRAAAAYAVNPAAVTASGSENGGTAPGLAFDGNGSTRWSSNFADDAWIRLDLGSTIRVDRVVLDWEAAYGKCYALEISKNGTDWTPFFTETDGKGGTVTAHTYPQEVTGRYLRLRGIQRATPYGYSLWSFRVYGGEPAPAATTRANLALNHPAYSNFYQHAGNSPAFVTDGGWPADLKADATRWSSDWNADRWVSVDLGATSTIDTVDLYWEAAYAVDYQLQVSDDNRTWRTVYQPSASEVAARRANVKSPGEATGLHDTIRLPQPATGRYVRMLGKERRSFYNPAPYTAQFGYSLYEFQVWGTGGSAAAAYPALPGEQQGTYQTTFFDDFTSAGLDRSKWRVVRTGTEMGPVNGESQAYVDSPDTIRTENGSLILRARYCKGCTQAGGTTYDFTSGRIDTHTRFDFSYGRVSARMKLPVGDGYWPAFWLLGSNVDDPSVSWPASGETDIMENIGYADWTSSALHGPGYSADGNIGARQTYPNGGRADQWHTYAVEWTPTAMRFFVDDRLVQETTRNVLESTRGQWVYDHNQYVILNLALGGAYPAGWNKVTTPYWGLPQSSVDRIAAGGVQAEVDWVRVEQKR
>CP029788.1|AWT46432.1|6926366_6926699_-|deoxyxylulose-5-phosphate-synthase
MPPAKTSFVCLPCRASFKQPYAGAWVRRCPRCARELVHVGSAFAAPPRRDTKGWRVLSVLLHAGVRFHKSCCSGGAGYRPRTLREVRERMAYARRTGEPVARALTRPEVP
>CP029788.1|AWT47884.1|6926862_6927261_+|hypothetical-protein
MADWIYILNPLRDVLDQEPCDKEKILGLAEEDPEAEFWLSRRNRMVPGDRVWFFFTSPDAAVAAVGEVDEEPRLDSEAGDGSYLVPVTLLTEATKALYRAPVGRDELGLGQVRSVQKVKPAALPLLLERAGL
>CP029788.1|AWT47885.1|6927352_6928405_+|hypothetical-protein
MMLGLALGETLGAARGSVPDAGPLRAGVATQLACFTAEGVIRAQVRGNHKGICYAPGVVLHAYSRWAYLQGIAVEKMLARWQSPGDRPWPDGWLAGVPALAERRGSAPATVAALSRIDEGEKAMATPSRGAHALTRSLPVAVTGVEGVALVDALAGLTHGDPAARGAAVHAALLTRHCLNHPLPDRTPYAPFDGILGEALDAGLTALPSEARSLSEEEHDRLRAAFREAAEAPADPARLARLAPDATAPSALLGGIYAAASFPRPADLRAALAFAATAPAGDSVACVTGALLGAAHGVEALPTDLVARHELAWVLDTLARDLVLELDDSPSGSEYVQGWDPHWWNRYPGW
>CP029788.1|AWT46433.1|6928512_6929070_+|GNAT-family-N-acetyltransferase
MQVLDFRIRPARPEDLDAARAVMLDTVYRDFGTGYVPRWHGDIVDPAAAYLTPDRHTLLVAVAPDGEVAATGALDSRGPAHPPNPRRLAERYPSGTTAQLRRVYVRPEHRRRGLARRIVRDLVAFAAADGGYRAVYLHTDPAVPGAEAFWRSLGRVVLDERAEGHGQRTVHFEVPMTVAAEAVSR

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Crispr_ID: CP029788_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_14

7013106-7013210

Orphan

Consensus_repeat	Method
GACACGCCGGTTCGAATCCGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029788_14

>merge|CP029788|14|7013106-7013210|CRISPRCasFinder
GACACGCCGGTTCGAATCCGGCCGTCCGGGCGCGTCCCGGGTCCCGTAGAGCAGAGGCAGACTCGCCGCCTTCTCAGGGCGGATACGCCGGTTCGAATCCGGCCG

>CP029788|14|14|7013106-7013210|CRISPRCasFinder
GACACGCCGGTTCGAATCCGGCCG	TCCGGGCGCGTCCCGGGTCCCGTAGAGCAGAGGCAGACTCGCCGCCTTCTCAGGGCG
GATACGCCGGTTCGAATCCGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT46503.1\|7012720_7012966_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
CP029788.1\|AWT46504.1\|7013246_7014587_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187585
CP029788.1\|AWT47891.1\|7020784_7021627_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT46497.1\|7005307_7005772_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP029788.1\|AWT46508.1\|7021733_7022708_-\|acyl-ACP-desaturase	unknown	unknown	gnl\|CDD\|153109
CP029788.1\|AWT46499.1\|7008249_7009320_-\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|236191
CP029788.1\|AWT46495.1\|7003724_7004372_-\|succinyl-CoA--3-ketoacid-CoA-transferase	unknown	unknown	gnl\|CDD\|188219
CP029788.1\|AWT46506.1\|7017960_7019370_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226382
CP029788.1\|AWT46511.1\|7023884_7025513_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|223562
CP029788.1\|AWT46509.1\|7022927_7023704_-\|N(G),N(G)-dimethylarginine-dimethylaminohydrolase	unknown	unknown	gnl\|CDD\|224747
CP029788.1\|AWT46502.1\|7011713_7012505_-\|hydroxylase	unknown	unknown	gnl\|CDD\|319911
CP029788.1\|AWT46501.1\|7010623_7011664_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP029788.1\|AWT46500.1\|7009393_7010425_+\|ATP-dependent-DNA-ligase	unknown	unknown	gnl\|CDD\|240135
CP029788.1\|AWT47889.1\|7005775_7006747_-\|DUF3048-domain-containing-protein	unknown	unknown	gnl\|CDD\|378618
CP029788.1\|AWT46496.1\|7004371_7005127_-\|succinyl-CoA--3-ketoacid-CoA-transferase	unknown	unknown	gnl\|CDD\|224702
CP029788.1\|AWT46505.1\|7016133_7017960_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|99707
CP029788.1\|AWT46498.1\|7007007_7008198_+\|glutathione-dependent-formaldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|176243
CP029788.1\|AWT46510.1\|7023638_7023830_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182059
CP029788.1\|AWT47890.1\|7014961_7016122_+\|ribonuclease-inhibitor	unknown	unknown	gnl\|CDD\|238064
CP029788.1\|AWT46507.1\|7019603_7020464_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT46503.1\|7012720_7012966_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	5.60886e-26
CP029788.1\|AWT46504.1\|7013246_7014587_+\|short-chain-dehydrogenase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.32029e-12
CP029788.1\|AWT46497.1\|7005307_7005772_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.18851e-16
CP029788.1\|AWT46508.1\|7021733_7022708_-\|acyl-ACP-desaturase	gnl\|CDD\|153109	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD.	4.98261e-136
CP029788.1\|AWT46499.1\|7008249_7009320_-\|ATP-dependent-DNA-ligase	gnl\|CDD\|236191	PRK08224, ligC, ATP-dependent DNA ligase; Reviewed.	0
CP029788.1\|AWT46495.1\|7003724_7004372_-\|succinyl-CoA--3-ketoacid-CoA-transferase	gnl\|CDD\|188219	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by pfam01144. The A subunit represents a different clade in pfam01144.	8.14148e-126
CP029788.1\|AWT46506.1\|7017960_7019370_-\|hypothetical-protein	gnl\|CDD\|226382	COG3864, COG3864, Uncharacterized protein conserved in bacteria [Function unknown].	5.24968e-13
CP029788.1\|AWT46511.1\|7023884_7025513_-\|ABC-transporter	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	5.07879e-124
CP029788.1\|AWT46509.1\|7022927_7023704_-\|N(G),N(G)-dimethylarginine-dimethylaminohydrolase	gnl\|CDD\|224747	COG1834, COG1834, N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism].	5.1373e-41
CP029788.1\|AWT46502.1\|7011713_7012505_-\|hydroxylase	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	3.25489e-29
CP029788.1\|AWT46501.1\|7010623_7011664_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	8.17869e-101
CP029788.1\|AWT46500.1\|7009393_7010425_+\|ATP-dependent-DNA-ligase	gnl\|CDD\|240135	cd04865, LigD_Pol_like_2, LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.	8.0545e-126
CP029788.1\|AWT47889.1\|7005775_7006747_-\|DUF3048-domain-containing-protein	gnl\|CDD\|378618	pfam11258, DUF3048, Protein of unknown function (DUF3048) N-terminal domain. Some members in this bacterial family of proteins are annotated as YerB. However currently no function is known. This entry represents the N-terminal domain.	5.56219e-39
CP029788.1\|AWT46496.1\|7004371_7005127_-\|succinyl-CoA--3-ketoacid-CoA-transferase	gnl\|CDD\|224702	COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism].	1.27087e-95
CP029788.1\|AWT46505.1\|7016133_7017960_-\|AAA-family-ATPase	gnl\|CDD\|99707	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.	0.000553247
CP029788.1\|AWT46498.1\|7007007_7008198_+\|glutathione-dependent-formaldehyde-dehydrogenase	gnl\|CDD\|176243	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	0
CP029788.1\|AWT46510.1\|7023638_7023830_+\|hypothetical-protein	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0.00731676
CP029788.1\|AWT47890.1\|7014961_7016122_+\|ribonuclease-inhibitor	gnl\|CDD\|238064	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).	1.06395e-13

>CP029788.1|AWT46503.1|7012720_7012966_+|WhiB-family-transcriptional-regulator
MHIDTIPAPDLAWQQEALCAQTGGDFFFPEPGSSVREAKRICGLCPIRSACLEYALEHDERFGVWGGLSEKERLALRRTCS
>CP029788.1|AWT46502.1|7011713_7012505_-|hydroxylase
MLTTRFVDGAPNWIDVGTSDIEGATRFYGALFGWQFVSAGPDAGGYGFFQLDGKTVAGGMQTTPEQGPPSWTVYFQSRDAQATAQAAGQAHGRVLFQPMDVMGQGHMAILADQAGVSFGIWQPGQNKGVDLAGDPGSLCWVELYTPDIAAAAAFYHSVLGLETSAVPFPGGVYTCVNPAEGGEDAMFGGIVPLADDPTETDAFWLPYFEVPDTDAVVADAEKLGGTVRVPATDIEGVGRVARLADPYGARFAVIKSAPPQQQQ
>CP029788.1|AWT46501.1|7010623_7011664_+|LacI-family-transcriptional-regulator
MTETAPRPTLEAVAARAGVSRATVSRVVNGGDGVRPPLVERVLRAVDELGYVPNQAARSLVTRRHDAVAVVIAEPETRVFADPFFALQLRGISKELTAHDNQLVLLLTEGRDDHARVGRYLAGGHVDGALVFSLHLDDPLPGLIRRAGVPTVFGGRPGWSDDDERAAVYVDSDNRGGARDAVRHLVGLGRTRVAHITGPLDQTSAADRLAGYRDVMAGTDPGLVAEGDFTPAGGERAMRALLDRCPGLDAVFAANDLTASGALRVLRERGLRVPDDVAVIGFDDMLPLAEQTDPPLTTVRQPIEEMGRLMARLLLGSPRDGAAPADGSEPPTGVVLPTTLVRRASA
>CP029788.1|AWT46500.1|7009393_7010425_+|ATP-dependent-DNA-ligase
MGDAVELEAGGRTVRLSHPDKVFFPERGFTKLDLAQYYLAVGPGILRALRDRPTTLERYPDGLAGEWFFQKRAPKNMPDWIPTAHITFPSGRSADEMCPTEEGAVVWAAQYGTLTFHPWPVRRADVDRPDELRIDLDPQPGTDYADAVRAAGELRAVLEEFGGLRGFPKTSGGRGLHVFVPIEPRWTFTQVRRAAIAVGREMERRMPDHVTIKWWKEERGEKIFVDYNQTARDRTIASAYSVRPRPHAPVSAPLRWEEVGDAHPRDFDLATMPARFAALGDVHADMDDHRYSLEALLELATKDEHDHGLGDLPYPPEYPKMPGEPKRVQPSRARKPKQAAEGD
>CP029788.1|AWT46499.1|7008249_7009320_-|ATP-dependent-DNA-ligase
MDLPVMPPVKPMLAKSVARIPEGMQYEAKWDGFRAIVFRDGAEVELGSRTGKPLTRYFPELVAALRERVPKRCVLDGEIVIAREGHLDFDALTERIHPADSRVRTLAERTPASFVAFDLLALDDEAVLDVPLSDRRALLTRALAEVTPPVHVAPATTDIEVARSWFERFEGAGLDGVIAKPLTLRYLQDERAMFKIKHERTADVVVAGYRLHKSGPVVGSLLLGLYDDKGALQHVGVSAAFPMKQRAQLVDELEPLRMDDVAGHPWAAWSDEAAHETARLPGAPSRWSGKKDLSWVPLKPERVAEVAYDHMENGARFRHTARFRRWRPDRTPQSCTYAQLEEPVRYDLAEVLGTGG
>CP029788.1|AWT46498.1|7007007_7008198_+|glutathione-dependent-formaldehyde-dehydrogenase
MRAVTWQGKRDVRVENVPDPKIQEPTDAVIRVTSTGLCGSDLHLYEVLTAFMTPGDILGHEPIGIVEEVGAGVPDLKAGDRVVVPFQIACGDCWMCLNGLPTQCETTQVAGEGMGAALFGYTRLYGAVPGAQAEYLRVPQAQFGPIKIPEGPPDDRFVYLSDVLPTAWQAVSYADVPEGGSVAVLGLGPIGDMACRVAQVRGAGRVFGIDLVPERLRRAKERGVETFDLRSFDSDKELVAAIRDETDGRGPDAVIDAVGTEAHGSAAAKLAQQAVSILPRKIGAPLTERFGVDRLAALYTAIDLVRRGGTLSLVGVYGGMADPLPLLTLFDKQIQIRMGQANVRRWSDEIIPYLTDEDPLGVDDFATHRVPLEEAPHAYEMFQRKQEGAVKVLMKP
>CP029788.1|AWT47889.1|7005775_7006747_-|DUF3048-domain-containing-protein
MRRGTRTRRAERARAAALLAAAVTMALAAACTAPGGTHDDGRAPDPSPSTRHHGAVLAVKIDNARAARPQTGLNAADIVYAEQVEGGLSRLMAVYATDMPKAVGPVRSARESDLELLRQFERPTLAFSGAQKKLLPLIDAAPLRPETPGKVSGAFYRGTDRPAPHNLYLRPDRLLPTAPGRDALTTGFRYGARPAGGTAATSRTVRFPAATFTFTWSDALHGYRVSMDGTPTVTTDDGPVAPPTVVVQYVKVHPSAFHDFLGNHTPYTETVGSGRAEVLRDGRAYDVTWERPTPADGTRFTTRDGTPVNFAEGQVWVVFASAS
>CP029788.1|AWT46497.1|7005307_7005772_+|MarR-family-transcriptional-regulator
MAAVDLSTHPGHLARRLQQAHYLLWTTMVSEEITSPQFAVLNALVAEPGLDQRTVGERVGLDRSTIAEVISRLTRRGLLDKVRDPQDGRRSLLRLTDEGQRTHRKLAVRTARMNQVFLAPLSAEEQAVFLELIRRVSDAAEGLRNPAEPLVTQG
>CP029788.1|AWT46496.1|7004371_7005127_-|succinyl-CoA--3-ketoacid-CoA-transferase
MDKVVATAPEAVADVPEGASLAVGGFGLSGVPNVLIQALYERGVGGLSVVSNNCGALETGLAVLLAAGRITRVTGSYIGGNKEFARQYLGGELELELIPQGTLAERLRAGGAGIPAFYTPAGVGTQVAEGGLPWRYDGSGGVALASPPKEVREFDGVEYVLERGIRTDYALVRAAKGDRHGNLVFSKSSRNFNPLAAMAGRITIAEVEELVEPGGLDPDQVHLPGIFVQRVVALTAEQAADKKIEQRTVSS
>CP029788.1|AWT46495.1|7003724_7004372_-|succinyl-CoA--3-ketoacid-CoA-transferase
MAWTREQMAARAARELQDGQYVNLGIGLPTLIPNHLPPGVEVVLESENGILGTGPYPTEDAVDPDLINAGKETVTVLPGASFFDSALSFAMIRGGHIDVAVLGAMQVSARGDLANWAVPGKLVTGIGGAMDLVHGARTVIVVMTHTAKDGSPKILDTCTLPLTGRTCVNRIITDLGVLDVTDDGLVLVETAPGVTAEEITARTAAKVRVPEETAA
>CP029788.1|AWT46504.1|7013246_7014587_+|short-chain-dehydrogenase
MGEGTGTAISEAELAAFHAVVGKLRALPVDDPVRLRAEQVAASFARDGRLKRRKARGAEVSASDAATMAATATGALDRREDAPLAEPGSGGVYRKSRHCYVCKSAYRQVDTFYHRLCPDCAADNRRRRALSTDLTGRRALLTGGRVKIGFQLALMMLRDGAELLVTSRFPHDTVRRFHAVPGSEAWRDRLTVLAVDLRDPRQVLGLCEELRGEGRPLDILVNNAAQTVRRPPESYALLAAGEYEALPEGARRAPGFTPMRMLSGSAAALPAALREADEAGLLPDPSPENSWSARLGALDPAEVLETQLVNALAPALLCDRLLPLLLASPHPRRYVVNVTAVEGRFAVRNKTAGHPHTNMAKAALNMLTRTSAAELAEQGVHMCAVDTGWITDENPAPKKARMAGAGFRTPLDVVDGAARVYDPIVRGEAGAPLSGVFLKDYQEAEW
>CP029788.1|AWT47890.1|7014961_7016122_+|ribonuclease-inhibitor
MGFAGVPVVVPRPLGELEPLLDWLRAGRPAGERLDFAAGTVLPDGRLDLCKQALGARGAGLVAEALGQGPSPVRHLLLGTDALGDDGAEAVAGSAVETLYLGCNGITAGGACRIADRLRASPQVVTGVWLKRNPLGSAAGRAAAELIESARTLRTLDLVQTGLDPAGAVVLADALLAAAGNGRRIARLYLGGNPLGEAGADALGAVLAAGAVDEVYVSAAQLGDAGALRLADALDRAPHGRLTRLSVASNGIGPAAAARLVTAATAAGVGLLDLGRVRAAAVLAAADNRVDLAAAETIAAALAGAEHRLAHLVLSHTGMRSREAHRLLDTAPRAATPTRFVLGPGIASSIKRRLAAFSAHIPAPAVPADVAAVRSVHRTAPPPRQP
>CP029788.1|AWT46505.1|7016133_7017960_-|AAA-family-ATPase
MSTQTEQLTGLADRRRPDGPSRLEEFIDAMIDLGQTGQIFGEHGIGKTATFFSHIARAHPDTALVYVPAANLTPDDLLVNAPVRDPETGELVLRQLVMSQLKPGRPFVLLIDDSLQAGDTIQSQLMQVACNWTLGEHDLRELGCVGVFLTDNESLAETSARRGDLALLDRMVTMRITANDTSWRRHLAARYRPWDLTEVFALWASLPHGLRELLSPRTLDHILANAREGFPLRWGLPLVDGERLRLAEPGPDGRPGQNRTAEILDRIARAVGAPNPPRIADPVRQVVRAALRNRWTVLLQGPPGCGKTELVRETVREGLGREALYFSLPVTNVEDLCAPVPAPDGTLDNLLAAKFTGPEPKAIVWDEYNRPKDKAAFAKLMEITQEWSLAGRRIENLRAQIAVQNPPYHLGRKLLVSRNNIAQATRFTASLEVEPEDIPANEWLIDRYGADAETVLEWWKHDIDEEGRAWITKRTLERLIKLHRRGLPLEMATVYLGDGEYAPVPLTALIDRLRGRPVTGLRELARDVDAWEARLRRAAERSSEGGADSDVVHQILANAELSQLKKHRAAVVRLVALLPAKLRATYLVGASEKQQRFWTEVFMTMRKR
>CP029788.1|AWT46506.1|7017960_7019370_-|hypothetical-protein
MTYGDGGRRLRAPVVELTDLRALERYRPADPGVVAEARRLKEAALLDFGLTESAVASWLYAKCRHQIPTTAVDTAAVVASGDGTCLLLYNPGFFVGLGLDGVKFVLFHEARHLVHRHLLAEPELREDPVFELAAEVSVNHVALIRLEREELPLLDGRPTGVDPRRVYEAYTADLTAHGLQPVPYETFTETDMRVYGELKRMHHPPVPDPRLCLHLGEDGVPLDQRTVDEITSSALLNSLLAARRGHAGAERELLDLMGRTEEGSARAARLWGNLGAGLLRGETARTRTVDWWQRWLVDVLGSKLRDGERLVYPKKRGALLAALGQDPMLARRGPVREKVLVIAYDTSGSMPDHVVRWLTDLVGRIDGVEAHWLSFDAVVMPFRPGERVYGGGGTSFQAVADYVEGRTEVGGRRLDVTPDAVVVLTDGYAPPISPAEPEKWIWLITQGGSEWPETHTPAMACHRVTTGSR
>CP029788.1|AWT46507.1|7019603_7020464_-|hypothetical-protein
MALPSSVWRAPVDALPRHARSDAYVASIGADARLHPDFGSGLDDGRPFGIPVTVTDGNVPEAEVAFDYADESDPAGYRIPDDARVENGPTSDGDRHVVVFDRARCRSYELFDAHLQSSGRWHAGSGAVFDLRSTALRPDGWTSADAAGLPILPLLVRYDEVASGAVRHALRITVPRSDRSHVWPARHDAGAADDPDLPPMGLRLRLKQSVDTSGLPPQAKVVAEALKRYGAVVADNGSAWFVSGDQDERWDNEQLAALKTFKGSDFEAVDSSSLRTDPDSSAARTP
>CP029788.1|AWT47891.1|7020784_7021627_-|hypothetical-protein
MSDTSTAERAAGFLLGLTDEDTAARVRARTGLPGPEDRAETRLRIRRTLTWARAGLPGSVTLWALQEDDPELNAVLWQYAVTDPGLRRAMARGVPFGPGRTEQLPVNEAMAAEEPEIPESYLRLGLVGALRAVDSLGRARSAASMVLTEEDWWTVTVADDEQPLPGYARWALSVRPDCPPELRAQFGSHPKFTHRLRQAGVLDGPAEYATAHGPAVRVLDVLSLGHVLFPARMRAAEDALRPLVHEHLGDHEEAWAILAQLMGTFHGTAPELIATAGAIA
>CP029788.1|AWT46508.1|7021733_7022708_-|acyl-ACP-desaturase
MTITSPHLGSPAVWTDARLLYALEEVVEQELNRHLKVAKDWMPHEYVPWSDGRNFPGFFDDGEAWDKEQSKVTEVGRIALVVNLLTEDNLPSYHHEIATLFGRDGAWGTWVHRWTAEEGRHGIVMRDYLLASRAVDPDKLERFRMSHMSEGFESDNRHSMLHSIAYVAFQELATRISHRNTGHQSGDPVCDRMLARIATDENLHMVFYRNLLKAAFELAPDLTMQAVRDVVVNFRMPGHGIPGFERAAAQMAIGEVYNLRIHHDDVLQPVLRFLKVLEIDGLGPEGLQAQEELGMFLGGLDAEASKFDERLAARKARMAARGRI
>CP029788.1|AWT46509.1|7022927_7023704_-|N(G),N(G)-dimethylarginine-dimethylaminohydrolase
MPSKKALVRRPSPRLAEGLVTHIEREKVDVELAVEQWEAYVAALSAHGWETIEVEPADDCPDSVFVEDTVVMYKNVALITRPGAEARRPETAGVEEAVAALGCSVNWIWEPGTLDGGDVLKVGDTIYVGRGGRTNPAGVQQLRAAFEPLGARVVAVPVSKVLHLKSAVTALPDGTVIGHIPKVDRPALFPRFLSVPEESGAHVVLLGGSTLLMAASAPRTAELLTDLGFEVVTVDIGEFEKLEGCVTCLSVRMRELYA
>CP029788.1|AWT46510.1|7023638_7023830_+|hypothetical-protein
MRHQTFGEARAGAADEGLLAGHELVSVSAGWFCGPSPDPVGPSPDPVGPSPDPVGPSPDPVGP
>CP029788.1|AWT46511.1|7023884_7025513_-|ABC-transporter
MTMSITCTSLSFAWPDGTVVFDGLDASFGPGRTGLVGVNGSGKSTLLKLIAGELAPADGTVRVAGEVGWLPQNVTLDTALRVDEALGIAARRAALHAIEAGDVSEEHFETVGDDWDVEERALATLGELGLGHIDLDRTIGEVSGGESVLLRLAALLLRRPDVLLLDEPTNNLDLYARRRLYAAVEAYSGVLVVVSHDRELLDLVDRIADLRGGEVTWYGGNYSDYEETLAVEQEAAERMVRVAEADLKKQKRELVEARTKLAARTRYANKMYENKREPRAVMKLRKRAAQVSAGKHRILHEERLAEAKERLDEAVEAVRDDDEIRVELPYTAVPPGRGVLTLQDLHLAYGARVEGGLDLRGPERIALIGRNGAGKTTLLRTIAGELAPVSGEVAAHVPLRFLPQRLDVLDDELTVAENVARFAPDAGNNRVRARLARFLFRGARADQQAGTLSGGERFRAALAALMLAEPAPQLLMLDEPTNNLDMASVRQLTTALESYQGALLVASHDLAFLESIGITRWLVLEEGVLKEATEEHLGRATA

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Crispr_ID: CP029788_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029788_16

7239664-7239744

Orphan

Consensus_repeat	Method
TCGACTACCTCGACGTGTCGTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029788_16

>merge|CP029788|16|7239664-7239744|CRISPRCasFinder
TCGACTACCTCGACGTGTCGTACTGAGCGACATGTCGTACCGATCCTCAGGACGACATTCGACCACCTCGACGTGTCGTAC

>CP029788|16|16|7239664-7239744|CRISPRCasFinder
TCGACTACCTCGACGTGTCGTAC	TGAGCGACATGTCGTACCGATCCTCAGGACGACAT
TCGACCACCTCGACGTGTCGTAC

Protein	Signature genes	Signature genes Name	Protein_function
CP029788.1\|AWT47909.1\|7234144_7235044_-\|TIGR00374-family-protein	unknown	unknown	gnl\|CDD\|377103
CP029788.1\|AWT46670.1\|7229765_7230020_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT47910.1\|7241954_7244450_-\|antitermination-regulator	unknown	unknown	gnl\|CDD\|369272
CP029788.1\|AWT46678.1\|7244547_7248822_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362
CP029788.1\|AWT46685.1\|7257575_7258775_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT46669.1\|7228872_7229769_-\|RNA-polymerase-subunit-sigma	unknown	unknown	gnl\|CDD\|274357
CP029788.1\|AWT46680.1\|7250579_7251779_+\|spore-photoproduct-lyase-family-protein	unknown	unknown	gnl\|CDD\|188401
CP029788.1\|AWT46672.1\|7231231_7231972_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|212491
CP029788.1\|AWT46677.1\|7239750_7241661_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226418
CP029788.1\|AWT46671.1\|7230368_7231127_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236205
CP029788.1\|AWT46684.1\|7256973_7257564_-\|hemerythrin	unknown	unknown	gnl\|CDD\|213983
CP029788.1\|AWT46674.1\|7237402_7238227_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224276
CP029788.1\|AWT47908.1\|7233376_7234096_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187585
CP029788.1\|AWT46679.1\|7249426_7249900_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT46673.1\|7232011_7233277_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT46675.1\|7238460_7239078_+\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT46681.1\|7251794_7253987_-\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
CP029788.1\|AWT46668.1\|7227997_7228861_-\|hypothetical-protein	unknown	unknown	unknown
CP029788.1\|AWT46683.1\|7255881_7256889_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP029788.1\|AWT46682.1\|7254132_7255689_-\|choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000

Protein	Function_ID	Function_description	E-value
CP029788.1\|AWT47909.1\|7234144_7235044_-\|TIGR00374-family-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.11266e-11
CP029788.1\|AWT46683.1\|7255881_7256889_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.03308e-22
CP029788.1\|AWT46669.1\|7228872_7229769_-\|RNA-polymerase-subunit-sigma	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	6.17221e-08
CP029788.1\|AWT46678.1\|7244547_7248822_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.8584e-59
CP029788.1\|AWT46681.1\|7251794_7253987_-\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
CP029788.1\|AWT46672.1\|7231231_7231972_-\|short-chain-dehydrogenase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.23389e-67
CP029788.1\|AWT46677.1\|7239750_7241661_-\|hypothetical-protein	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	1.26042e-09
CP029788.1\|AWT46671.1\|7230368_7231127_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	1.33701e-158
CP029788.1\|AWT46674.1\|7237402_7238227_-\|hypothetical-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.05562e-16
CP029788.1\|AWT47908.1\|7233376_7234096_+\|short-chain-dehydrogenase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.51673e-87
CP029788.1\|AWT46680.1\|7250579_7251779_+\|spore-photoproduct-lyase-family-protein	gnl\|CDD\|188401	TIGR03886, hypothetical_protein_SlinDRAFT_56750, spore photoproduct lyase family protein. This uncharacterized radical SAM domain protein occurs rarely and sporadically in species that include select Alphaproteobacteria and Actinobacteria, and in Deinococcus deserti VCD115. It is a distant but full-length homolog to the Bacillus subtilis spore photoproduct lyase (spl), which monomerizes thymine dimers created as DNA damage by uv radiation.	0
CP029788.1\|AWT46684.1\|7256973_7257564_-\|hemerythrin	gnl\|CDD\|213983	cd12108, Hr-like, Hemerythrin-like domain. Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis.	1.15548e-10
CP029788.1\|AWT47910.1\|7241954_7244450_-\|antitermination-regulator	gnl\|CDD\|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	8.46257e-44
CP029788.1\|AWT46682.1\|7254132_7255689_-\|choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0

>CP029788.1|AWT46675.1|7238460_7239078_+|hypothetical-protein
MTDAGPPVRETGAVFERVLDEALDCRQIRDALDRAGGALSREQLRSRARQARPAITAAAAAEYQEYLRSTCAEEASDDVPPPPAVRASLLFAGAAALLLPTGYGLSAVAGHPYIGGGLVTAGLIAGSLAVGAGAGDLLWQRLTRTTARPGDAAPRDPDAPRATPPAGAAGEAARAREAWELALRERGVVPFLLGRLEEAATGRRL
>CP029788.1|AWT46674.1|7237402_7238227_-|hypothetical-protein
MEIQNPGSGGREQLLAACGDCFGLCCVALPFARSADFAADKPAGKPCGNLQADFRCGIHARLRDEGYQGCTVFDCFGAGQKVSQVTFGGTDWRAAPQSAGTMFAVFPVMRQLHELLWYVDEALRLAAARTVHRDLRRAYDRIDALTRRSAEEVLALDVNALRGEVNELLLRASELARARIPGRKRNHRGADLMGARLAGADLRGASLRGALLVAADLSGADLRGADLIGADLRDADLSGADLTDGLFVTQAQLNAARGTASTRLPAGLERPGHW
>CP029788.1|AWT47909.1|7234144_7235044_-|TIGR00374-family-protein
MVPLLLVTVVAVRHRSVLAEGLARLRSAEWPWLVAAVGATCLTWVAAACTRQGAVVERLPWRRLLATQFAAGAANHLLPTGLGASAVNLRFLTVCGVPLARSSAALALYLLAECVGRLSLMAALLLVFPGALRFGALLPEDVFGPLLLAGSAVALAATTALVVVRRLRSAVCGFLRTALAEARAVHARPARALALWGGALAFPALQATALVLVGRALGLAVPPGHVAVAYLAATVAVALVPTPGGVGSVEAALVVALVAAGGPAAVATAVVLAYRILTVWLPLVPGALTLAALVRMKVI
>CP029788.1|AWT47908.1|7233376_7234096_+|short-chain-dehydrogenase
MSPHAPHTPPTPVALVTGANRGIGREVARQLAGLGHHVLLGSRDPRKGEQAAAAIDPGGERVRAVRLDVSDAASVTAMAERIARETGRVDVVVNNAAILYDSWARARAADLAEVQQALDTNLFGAWRVTQALLPLLERSPHPRVVNVSSEAGSLASMSGGTPAYSVSKAALNALTRLLAGELRAQRVLVNAVCPGWTDTDMGGGGRPVAEGAAGVVWAATLPDDGPTGGFFRDGKPVPW
>CP029788.1|AWT46673.1|7232011_7233277_-|hypothetical-protein
MGDVGKIDQDAVLRARATLLASDTPSRARQVEAYRVLAEVSPESYLPKLAKALVSYGYEPEFRDRPEARLALNAEAVAVARRIDPDDPRRTEVLVDTLRSWQFELFRAGRRAEALAVCGEMAEVGRDGFARGQVTSPEYGAARLAVVLAEEGRHGEAAELLGRFAARARAESPWSAFWDGLAHVAELEAAGRRGEALDAFADLVAADCAELESGRTSLAIPVWLLVHHSRMLDAAGRPAEARAARARALGLLTELDATGERRTWGNMPAWWVTLLALSGRAAEPGYPAPAFGRHFTDWSPDLRQTYVDGIAPLEAEVAALRRAADADPDGPHLPELLERQRRLTVRSAVHREHRTHSVLKPLRPLFAEGVALARRLAARADPRRGRDALARALTDRAMFLLAGRQYGEAYDDFREVVALLD
>CP029788.1|AWT46672.1|7231231_7231972_-|short-chain-dehydrogenase
MSMDTADRPVALVTGSTSGIGEAVARRFAADGMRVVVHSRRSAAAGRALAEELGGTYLRADLEVEDEARGLMEAALDRYGRLDVLVNNAGISRPIPHADLAAATPADWRRLLEVNLIAPWVLCTAALPALRTAPGGGSIVNITSHAGVRPKGSSVPYAASKAALNHVTLLLAAALGPDVRVNAVAPGLVDTPMTKDWAGVHDLWRERAPMRRPARPEDVADLVASVVGSAYLTGEVIVLDGGLHLT
>CP029788.1|AWT46671.1|7230368_7231127_-|crotonase/enoyl-CoA-hydratase-family-protein
MSVRVERRGPVTTVVLSRPEVRNAVDGPTAAELAAAFREFEADDSARAAVLWGEGGTFCAGADLKAMGGEHGNRVAEDGDGPMGPTRLRLSKPVIAAVAGHAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGTSRALDLILTGRPVPAREALEMGLANRVVAPGTARAAAEELAATLAAFPQGCLRSDRASVLDQEGLSEEEALRQELRYGARVLPEALEGAARFADGAGRHGSFG
>CP029788.1|AWT46670.1|7229765_7230020_-|hypothetical-protein
MTSKKVLTVAVLATVLTWSTVMTVLGQVAAVAALLPSLGLLVQQIVQALTAPDGSRPADGTPAPDGRPPAGAGPVAAGGQEPPR
>CP029788.1|AWT46669.1|7228872_7229769_-|RNA-polymerase-subunit-sigma
MIWSPDADQPPPPDTFGPGGRRGRKPAPISDTAGLSHRAWLEPVRSLLFASGLTLNDLVDRSGYSKTRISELLRGNGYYPAWEITFSVIRALGLPGRPMLRLWTAAAREARKEPAWIRHSIEQVALQPERPPLAHRAFTEAMTRPYTDYARAFLLTEERARAAVWETFDILWLCWSEAATSADIRRYAWLLLRSRVMARAHRRQDGGPDLRAAVFSTAEVHDSVPGHVVVLSELVDLFDAIGRLPHDQLDVAVLRYLCGMPLDAVPDVLGLTPAIAHAVDHHARATLERLLSSHSPRE
>CP029788.1|AWT46668.1|7227997_7228861_-|hypothetical-protein
MTSVDALLARARLHPGPDVPPDTVAYEDCAYFDLTADPATAPAGEPAGDDTAAEQLDRLCEVVVTAVAPGTLEFLTDQLPEPPAAWLLGCALHLAGVADGARFWWQYAAGAGHSPAAYCLSLHHHARGEEHAAAFWYDQTGLDEAAEADTFPVAGVCPSLSGFRFDASLPTVLRILSHLAAPGRRRLPHRADAVTNYVARAVAHGYRRHPGVEIPVPEPRFADRISFLLGTDPPWARRMARVFHRPALPSRAQSAGSAREGAGKGRTAAEAADAAAASTVASWGRPA
>CP029788.1|AWT46677.1|7239750_7241661_-|hypothetical-protein
MIGRERETAAVAGLLAAHRLVTVTGPPGAGKSTVAAAAVAASVSAGWECLVQVRRQGSAPGRPGDLAADLVTRLTGAPPAGPVAPERAARALPDAPTLLWLDDVDPVHDECVRLVQQVLLRAPRTGVLVTSRRALGLDAERTVRLSGLRCRPAPEDGEGPAPAVELFLRHAPTGHGAPDPESVAEVCRLVEGLPLAVELAAEQTAQLPVRELVRLLRLSQTWLAGPRRAHRRHRSLRDAAGSAWMLCDTAVRTVWARASLFAGSFTETSAVHLCAGGAVEPAQVPSCLVQLAAHGVLEVRGEVGAVREHRYRMTRLAREFGAERLTARGEFAAAALRRSQRWGQVAAEAESLWERGAQSRAVRLVSEEYEELAALFAHACTEPSLAPAALQTGLRLWFWWVACDRAEEGADRLLALLPHCDGSPLLARGQWLAAWLSARTAPETARALLDDAWWASVLAGDTATVGRIAHVQGVLALQEGDARAAAGHFQLAADTIPAHAPGGPPATLSLAALALAQLRYAPAAARRSAHRALAQAGLRQDAWVCQVARYAQACTDHGLGRPGRAWQRARRALADTDDGLPATHGTSALRQLLADIETGSPARLELPAALVPHTAPLPAPRPSDREIRLGRGPAPA
>CP029788.1|AWT47910.1|7241954_7244450_-|antitermination-regulator
MSDQPAEPRELEASPAEVEHAGSGTGPAEVEYAGTGTGPLPAGPGEPAGASATSPVGRLAATVERLRQEVRSAQAEAEGRALIELAKGILVERLGCGPAQAARQLAELTDQAGVTLLEFAVDVINQAARDRLSEVTDAFLAATSGSRSADGGEAAVRLRAAESGALAAHDTQAVADSLLEHALRPLGAVAVAVWAAGSDGSLTLAGSAGFAPAEASRWRYVPPDVVTVARRGLTERSGQWIESLTETGLPTIGRHLYPDGGRAAVPAGTGGRIHGVLEIAWPTAVEPQPPQILRQVEALAELCAHTLENFTPGPDAVQEPRLVPDVAELMDLADGLHDPALVLVPHTDPAGQLVDFRIQHVNTRFLDPAGRPRAVINGELLLEAYPMTAGDSELFQRIERVYATGEPFRAQRMRLTALVGQVPLSAVADISISRHGASVLLIWRIEDETARLASLLQHAQRLGRIGGFEEDLLTGGITWNSQMYDLFGRPDTSLPVPLEDLPAHAHRDDAVIIGRFLRTLLHHRRPASAAFRLQRPDGVTRHVRVVAEPVQDAAGRLFVVRGAYQDISAQHWTEVALAATRDQLAHTEQQAAERNRLTLQLQHAIMPPAQAPLQAPGLEVAVRYRPAEAEQLVGGDWYDAVVLPSGQVLLCVGDVAGHGIEAATSMVVLRNALRGLAVTGAGPGQLLSWLNIVAHHLNGAVTATAVCGLYDPDRRVLRWARAGHLPPVLVRSGEAAPLPLVKGILLGALPDVVYEEAEELLAPEDTLLMYTDGLVERRDRSVEESVTHLVTTARSAPKTLDQQLDRLLTYGRSDTDDDTCLVGVRVMKEAS
>CP029788.1|AWT46678.1|7244547_7248822_-|hybrid-sensor-histidine-kinase/response-regulator
MASKNSAVVETVPGDEELRRLLDGLTAVRDGDFGTRLPDDGDGLMGDIAKVFNGMVDQLSVFTSEVTRVAREVGTEGTLGGQAQVPGVSGTWADLTDSVNAMAGNLTTQVRDIAQVATAVAKGDLSQKIDVPARGEILQLKETVNTMVDQLSAFADEVTRVAREVGSEGRLGGQAKVPGVAGVWRDLTDSVNLMAGNLTSQVRNVAQVTTAVAKGDLSQKITVDARGEILELKNTINTMVDQLSAFADEVTRVAREVGTEGRLGGQADVKGVRGTWRDLTDSVNFMAGNLTSQVRNVAQVATAVAEGDLSQKITVDARGEILELKNTINTMVDQLSAFADEVTRVAREVGTEGRLGGQAHVRGVSGTWKDLTDNVNVMASNLTSQVRSIAQVATAVARGDLSQKITVEAKGEVAALADAINTMVDTLSAFADEVTRVAREVGTEGRLGGQAQVPNVAGTWKDLTDNVNSMANNLTGQVRNIALVTTAVARGDLSKKIDVDARGEILELKTTINTMVDQLSAFADEVTRVAREVGTEGRLGGQAEVEGVSGTWKRLTENVNELAGNLTRQVRAIAEVASAVAEGDLTRSINVEASGEVAELKDNINSMVESLRETTRANQEQDWLKTNLARIAGLMQGHRDLPVVAELIMDELVPLVSAQYGAFYLMEDGEQGAELRLVGSYGRPADDPRPDPIPVGRSLVGQAARSRRTIAVDQLPADYVTISSGLGHTVPTTLLLLPILFEDQVLGVIELASITPFTPIHQDLLEQLRETIGVNVNTIVANARTDELLGESQRLTAELQVRSAELQAQQEELQRSNAELEEKASLLAAQNRDIEAKNLQIEQARQELEARAQQLALASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPQRNLTQKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDVTPERVPLRRLIDYVEATFRPMTTQKGLDFAVTTAAGAPRDLLTDDSRLRQVLRNLLSNAVKFTEQGQVELLIEPAADEEVPAAVVKGGSVVAFRVKDTGIGIQEQQLEAIFGAFQQADGTTSRKYGGTGLGLSITREIAHLLGGAVTVDSAPGRGSTFTLYLPVARPDFETPVGRLPEQHAEPAVVQQAVEAPAALPAAAERAGRPRRLLVVEERPRGLLTLVAESVVADVARHREEDVLPWPDVELITAVSAQEAAGALAAEPCHCVVLDLDLPDGEAAQFLRALGGDSALADVPVLVHSSLRPDAAREESLRARADHAAVEFVAGLDELRERIALHLSAEEPGEVLSLARTEEPQQLTSHVVDTSLAGRTVLVVDDDARNLFALSGILELYGLRVLHAEDGRKGIDTLLANSDVSLVLMDVMMPEMDGYTATAEIRKMPQYADLPVVAVTAKAMPGDREKSLASGANDYVTKPVDTQELLACLRRWLAP
>CP029788.1|AWT46679.1|7249426_7249900_-|hypothetical-protein
MTEANKGTDQKNGTAKRTTASRTRSAAGKATRQAERTARQSADGAAKGGSAVADGASKAKSAAAAGAADAARKTAGAAEAATRKLEAGRKAAAAATGQVTVAARTAWTALAHRKLLAMGVGAGATALTAASYAAGRRSGRAAQGFQGPLTRLTGGRI
>CP029788.1|AWT46680.1|7250579_7251779_+|spore-photoproduct-lyase-family-protein
MPHPAGPSDDDGAATLFGLEALGAPGAPATGAPAEPSAGPAFRTGDTARRLLPVREIYAEPAAAASPRGRQIRERFPRARLIEVDSHWNIPGLHGNEGNVERWVRVKGETLVLGERKTLTTRPNGRSADWIAPGPSNGCAMACAYCYVPRRKGYANPVTVFTNIDTIIAHLGRHIARQGRKPAPNQCDDTAWVYDIGENGDCSVDALICDNTADLVHAFRQWPTAKASFATKFVNPDLLAYDPRGRTRIRFSVMPADDSRLLDVRTSPVAERVAAAADFVDAGYEVHFNLSPVVLRPGWQAAWGELLEHLDDVLPARVKEQSAAEVIMLTHNRDLHEVNLGWHPKAEDALWRPALQQSKRSENGALNVRYRNQVKAEALHDLRGLIAARAPWLRIRYAF
>CP029788.1|AWT46681.1|7251794_7253987_-|catalase/peroxidase-HPI
MSGSESENPAIPSPTPTPTRRPRTNRDWWPNQLDLQVLHQHSPLSDPLGEDFDYAKEFATLDVEALKRDVFEVMTSSQDWWPADYGHYGPLFIRMSWHAAGTYRIADGRGGGGSGAQRFAPLNSWPDNASLDKARRLLWPVKQKYGRKISWADLLVFAGNCAMESMGFETFGFGFGREDIWEPEEIFWGPEDTWLGDERYSGDRELTGPFAAVQMGLIYVNPEGPNGNPDPMAAARDIRETFGRMAMNDEETVALIVGGHTFGKCHGAVDPSYIGPEPEAAPIEQQGLGWRNTYGSGKGPDALTSGLEGAWTTAPTTWDNGYLDNLYGYEWELTRSPAGAHQWTPTDPAARDTVPDAHDPSKRHAPMMLTTDLALKVDPVYGPITKRFHEHPEELALAFAKAWYKLLHRDMGPVSRYLGPWVPEPQLWQDPVPAVDHDLVGAEDIADLKSRILATGLSVPQLVTTAWASASSFRGTDKRGGANGARIRLAPQKDWELNNLPEVTEVLRALEQIQQDFNASQTGGTRISLADLIVLGGCAAVERAARNAGYDITVPFAPGRTDASQEQTDAETFAVLEPKADAFRNHLPAGEKLSPETLMLDRANLLTLTAPEMTVLIGGMRVLNTGFKGSPHGLLTHRPESLTTDFFVNLLDMGTEWKASATDENVFEGRDRATGEVKWTATAVDLVFGAHAQLRALSEVYACRDSGEKFVRDFVAAWNKVMNLDRFDLA
>CP029788.1|AWT46682.1|7254132_7255689_-|choline-dehydrogenase
MSTYDYVIVGAGSAGCVLAARLSEDPEVRVALIEAGGPDTAQEIHVPAAFPQLFKSALDWDLDSEPEPGIGNRRAYLPRGRVFGGCSSINAMIYIRGNRADYDGWAAAGADGWSYDEVLPYFKRSEGNERGEDEFHGADGPLTVSDGRSEHPLASAFVQAAVQAGHKANDDFNGATQFGVGRYQLTQRGGLRCSAAVAYLHPALERPNLTVLSFALAHRVVIEGGRATGVEVERGGAVEVVRAEREVILSAGAYESPKLLMLSGIGPAATLSAFGIDVVRDLPVGEGLQDHYMTLLNFRTDVESLLTAATPENAALLQNEGRGHLTSNIGETGGFFRSRDDLTAPDLQFHAAPVLFHQEGLGAAAEHGFSFGPCVLAPAGRGAVTLRSPRPDAAPRITHNYLVAPEDQEVIVAGLRVALEIAAQPAVTDLATGPYLVPESDADADLLAWARRHGQTLYHPTSTCAIGSVVDPELRVYGVPGLRVVDASVFPTVPRGNTNAPTVMAAEKAADLITGAGR
>CP029788.1|AWT46683.1|7255881_7256889_-|LysR-family-transcriptional-regulator
MDLDLALVRAFVATAGTLHFGRAAEELGTSQQALSKRVARLEEALGVRLFERRGGVRLSGAGERFLPAAREALAAGERAVASVTGAGPVVRIDTWGHLYAPMRTVAEAVQALGRVGEVPSAGRRGPGAVRWEPAPGRDWPSVAQALLRGDTDLGFGRVHPLPDGRDAGLTQRLVRLEPVDVVVGPSHPLAGAEALRPAGLRGSVLWCPAELNRLDFLRRFADEFGIARRHDGPNLGLDHLVRHLRTDREGFTLFPADAPLPDHTDVRRVPLVGPTPLYAWSLTWRESSRHPLLDTLLRGFTETGRARRWLEYDPRRDWLPDSDRPKLAVDRTPAR
>CP029788.1|AWT46684.1|7256973_7257564_-|hemerythrin
MSDLHTPQAGDDQLPDIDVVGLLMRQHGDIRNLFDEVERSEGEERRDAFRRLVRLLAVHETAEEEVVHPFVRSAVDGGAQIVEERLAEEKSAKETLSALDDMDTDDPKFLPMLMRLRTDVQEHARAEERYEFSHIRRSTDVTNLAAMAKAVKAAEAMAPTRPHPGVESATANVALGPVAALMDRTKDAVRKAMGSG
>CP029788.1|AWT46685.1|7257575_7258775_-|hypothetical-protein
MTFNPLEQRGIPLDRQLRNWRELNVQPIDPDRCDPYTRCRIITMNGIEVEAILFSHQLARNTVDPEVKRQLARTRYIEAQQQKVVNWLLPGVSSVLETTIAYEQVAVDLTAWVARMEPDPYLKQAYQFGVLEDFDHLYRYANLYEMIEHRKAESIVDNLTEVMPGRPTRYHHRDAYDNVRDPYDKTATDPLSKLHALTIMSAEQQTMNFYMNTGPTYMEPIARQLYQEIGLIEEEHVTHYESLVDPGETWWEQLVNHEYNECYLYYSFMEQESDPRVKSVWELHLNMELEHLHTACDLMRRHDGRDPQEVLAPELPNVLTFEPNKQYLRELLDTQMDLTTLGAGYVREAHERFEKMQEQIHGGEAPPSDRVMTEHDEMFGREYRVQTEGEHPDPAQREK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029788_2	2.1\|1182322\|22\|CP029788\|CRISPRCasFinder	1182322-1182343	22	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	69645-69666	1	0.955
CP029788_2	2.1\|1182322\|22\|CP029788\|CRISPRCasFinder	1182322-1182343	22	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	69777-69798	1	0.955
CP029788_15	15.1\|7237546\|22\|CP029788\|CRISPRCasFinder	7237546-7237567	22	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	347546-347567	1	0.955
CP029788_15	15.1\|7237546\|22\|CP029788\|CRISPRCasFinder	7237546-7237567	22	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	522584-522605	1	0.955
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1268900-1268923	2	0.917
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	518872-518895	2	0.917
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1268907-1268930	2	0.917
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1294204-1294227	2	0.917
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1195847-1195870	2	0.917
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1142434-1142457	2	0.917
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1489995-1490019	2	0.92
CP029788_15	15.1\|7237546\|22\|CP029788\|CRISPRCasFinder	7237546-7237567	22	MG652450	Ralstonia phage RsoP1IDN, complete genome	3693-3714	2	0.909
CP029788_15	15.1\|7237546\|22\|CP029788\|CRISPRCasFinder	7237546-7237567	22	NC_014214	Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence	15511-15532	2	0.909
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_012852	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence	197380-197403	3	0.875
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	6206-6229	3	0.875
CP029788_6	6.1\|3410971\|24\|CP029788\|CRISPRCasFinder	3410971-3410994	24	MN234216	Streptomyces phage Gilgamesh, complete genome	45416-45439	3	0.875
CP029788_6	6.2\|3411018\|24\|CP029788\|CRISPRCasFinder	3411018-3411041	24	NC_021295	Burkholderia insecticola plasmid p2, complete sequence	100230-100253	3	0.875
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1962192-1962216	3	0.88
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	2107914-2107938	3	0.88
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	279936-279960	3	0.88
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP035710	Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence	217854-217878	3	0.88
CP029788_4	4.1\|3245658\|25\|CP029788\|CRISPRCasFinder	3245658-3245682	25	NZ_CP050953	Rhodococcus sp. DMU1 plasmid unnamed	184274-184298	4	0.84
CP029788_4	4.1\|3245658\|25\|CP029788\|CRISPRCasFinder	3245658-3245682	25	NZ_CP046574	Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence	105847-105871	4	0.84
CP029788_4	4.1\|3245658\|25\|CP029788\|CRISPRCasFinder	3245658-3245682	25	NC_011984	Agrobacterium vitis S4 plasmid pAtS4c, complete sequence	163379-163403	4	0.84
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	MN304817	Phage 68_12, complete genome	14960-14984	4	0.84
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_LR134467	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 25, complete sequence	100153-100177	4	0.84
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	573296-573320	5	0.8
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1477761-1477785	5	0.8
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	475318-475342	5	0.8
CP029788_9	9.1\|6122312\|25\|CP029788\|CRISPRCasFinder	6122312-6122336	25	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	259352-259376	5	0.8
CP029788_10	10.1\|6577865\|28\|CP029788\|CRISPRCasFinder	6577865-6577892	28	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	137700-137727	5	0.821
CP029788_11	11.1\|6578243\|31\|CP029788\|CRISPRCasFinder	6578243-6578273	31	NZ_CP020385	Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence	31888-31918	5	0.839
CP029788_13	13.1\|6917049\|27\|CP029788\|CRISPRCasFinder	6917049-6917075	27	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	301739-301765	5	0.815
CP029788_10	10.1\|6577865\|28\|CP029788\|CRISPRCasFinder	6577865-6577892	28	NZ_AP022578	Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence	95731-95758	6	0.786
CP029788_10	10.1\|6577865\|28\|CP029788\|CRISPRCasFinder	6577865-6577892	28	NZ_CP010024	Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence	322018-322045	6	0.786
CP029788_11	11.1\|6578243\|31\|CP029788\|CRISPRCasFinder	6578243-6578273	31	NZ_CP038257	Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence	122966-122996	7	0.774
CP029788_1	1.1\|1166454\|31\|CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1166125-1166155	8	0.742
CP029788_1	1.1\|1166454\|31\|CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2219021-2219051	9	0.71
CP029788_1	1.1\|1166454\|31\|CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3965174-3965204	9	0.71
CP029788_1	1.1\|1166454\|31\|CP029788\|CRISPRCasFinder	1166454-1166484	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4829225-4829255	9	0.71
CP029788_3	3.1\|2568169\|34\|CP029788\|CRISPRCasFinder	2568169-2568202	34	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	340030-340063	9	0.735
CP029788_8	8.1\|5325505\|35\|CP029788\|CRISPRCasFinder	5325505-5325539	35	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	225277-225311	9	0.743

1. spacer 2.1|1182322|22|CP029788|CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 1, identity: 0.955

ctaccagcagcagcccgggtac	CRISPR spacer
ctaccagcagcagcccggctac	Protospacer
****************** ***

2. spacer 2.1|1182322|22|CP029788|CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 1, identity: 0.955

ctaccagcagcagcccgggtac	CRISPR spacer
ctaccagcagcagcccgcgtac	Protospacer
***************** ****

3. spacer 15.1|7237546|22|CP029788|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 1, identity: 0.955

tgaggtccgccccgcgcaggtc	CRISPR spacer
tgaggtcggccccgcgcaggtc	Protospacer
******* **************

4. spacer 15.1|7237546|22|CP029788|CRISPRCasFinder matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 1, identity: 0.955

tgaggtccgccccgcgcaggtc	CRISPR spacer
tgaggtcggccccgcgcaggtc	Protospacer
******* **************

5. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

6. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
ccggcacgggccgatcggcgtcgc	Protospacer
********* *** **********

7. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

8. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
ccggcacgggccgatcggcgtcgc	Protospacer
********* *** **********

9. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

10. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.917

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cggccacggtccgttcggcgtcgc	Protospacer
* * ********************

11. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.92

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtggcgttgggcgggaac	Protospacer
********** ** ***********

12. spacer 15.1|7237546|22|CP029788|CRISPRCasFinder matches to MG652450 (Ralstonia phage RsoP1IDN, complete genome) position: , mismatch: 2, identity: 0.909

tgaggtccgccccgcgcaggtc	CRISPR spacer
ccaggtccgccccgcgcaggtc	Protospacer
. ********************

13. spacer 15.1|7237546|22|CP029788|CRISPRCasFinder matches to NC_014214 (Meiothermus silvanus DSM 9946 plasmid pMESIL02, complete sequence) position: , mismatch: 2, identity: 0.909

tgaggtccgccccgcgcaggtc	CRISPR spacer
cgaggtccgccccccgcaggtc	Protospacer
.************ ********

14. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to NC_012852 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504, complete sequence) position: , mismatch: 3, identity: 0.875

ccggcacggtccgttcggcgtcgc	CRISPR spacer
acggcaggatccgttcggcgtcgc	Protospacer
 ***** *.***************

15. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 3, identity: 0.875

ccggcacggtccgttcggcgtcgc	CRISPR spacer
ccggcacggtcggttcggcggcga	Protospacer
*********** ******** **

16. spacer 6.1|3410971|24|CP029788|CRISPRCasFinder matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 3, identity: 0.875

ccggcacggtccgttcggcgtcgc	CRISPR spacer
cccgcacggcccgttcggcgtcgg	Protospacer
** ******.*************

17. spacer 6.2|3411018|24|CP029788|CRISPRCasFinder matches to NC_021295 (Burkholderia insecticola plasmid p2, complete sequence) position: , mismatch: 3, identity: 0.875

gagcctggtctgcccggtgctgcg	CRISPR spacer
gagcatggtctgcgcggtgctgct	Protospacer
**** ******** *********

18. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtgccggcggccgggaaa	Protospacer
**************.** ******

19. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtgccggcggccgggaaa	Protospacer
**************.** ******

20. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccctccgtgccggtgggcgggaac	Protospacer
***   *******************

21. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP035710 (Sphaerotilus natans subsp. sulfidivorans strain D-507 plasmid pSna507_unt10, complete sequence) position: , mismatch: 3, identity: 0.88

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gtcgggcgtgccggtcggcgcgaac	Protospacer
*.************* **** ****

22. spacer 4.1|3245658|25|CP029788|CRISPRCasFinder matches to NZ_CP050953 (Rhodococcus sp. DMU1 plasmid unnamed) position: , mismatch: 4, identity: 0.84

agcttccgctcccaccgacgacgcg	CRISPR spacer
cacttccgctccgcccgacgacgcg	Protospacer
 .**********  ***********

23. spacer 4.1|3245658|25|CP029788|CRISPRCasFinder matches to NZ_CP046574 (Rhodococcus sp. WAY2 plasmid pRWAY02, complete sequence) position: , mismatch: 4, identity: 0.84

agcttccgctcccaccgacgacgcg	CRISPR spacer
atcggccgctcccaccgacgacgcc	Protospacer
* *  *******************

24. spacer 4.1|3245658|25|CP029788|CRISPRCasFinder matches to NC_011984 (Agrobacterium vitis S4 plasmid pAtS4c, complete sequence) position: , mismatch: 4, identity: 0.84

agcttccgctcccaccgacgacgcg	CRISPR spacer
cgcttccgttcccaccgccgacgct	Protospacer
 *******.******** ******

25. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to MN304817 (Phage 68_12, complete genome) position: , mismatch: 4, identity: 0.84

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gacgggcgtgtcggtgggcgggacg	Protospacer
* ********.************

26. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_LR134467 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 25, complete sequence) position: , mismatch: 4, identity: 0.84

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgcgccggtgggcggcacg	Protospacer
********.************ *

27. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
ccccggcgtgccggtgggcgggcgg	Protospacer
 ** ****************** .

28. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
gccgggcgtgccggtgggcaccaga	Protospacer
*******************.  *.

29. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
ccccggcgtgccggtgggcgggcgg	Protospacer
 ** ****************** .

30. spacer 9.1|6122312|25|CP029788|CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.8

gccgggcgtgccggtgggcgggaac	CRISPR spacer
ccccggcgtgccggtgggcgggcgg	Protospacer
 ** ****************** .

31. spacer 10.1|6577865|28|CP029788|CRISPRCasFinder matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 5, identity: 0.821

tggacgaccgtttcgtctccgcgaccgg	CRISPR spacer
gggcggaccgtttcgtcgcggcgaccgg	Protospacer
 **  ************ * ********

32. spacer 11.1|6578243|31|CP029788|CRISPRCasFinder matches to NZ_CP020385 (Rhodovulum sp. MB263 plasmid pRSMBA, complete sequence) position: , mismatch: 5, identity: 0.839

caccgtcgccgtccgcggtccccgcaccccc	CRISPR spacer
caccgtcgccgtctgcgggccccgcacatcg	Protospacer
*************.**** ******** .*

33. spacer 13.1|6917049|27|CP029788|CRISPRCasFinder matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 5, identity: 0.815

ccatgtgcctcccggcagaggggcggc	CRISPR spacer
tccggtgcctcccgacagagtggcggc	Protospacer
.*  **********.***** ******

34. spacer 10.1|6577865|28|CP029788|CRISPRCasFinder matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 6, identity: 0.786

tggacgaccgtttcgtctccgcgaccgg	CRISPR spacer
tggacgaccgtgtcgtcgccgcggtgcg	Protospacer
*********** ***** *****..  *

35. spacer 10.1|6577865|28|CP029788|CRISPRCasFinder matches to NZ_CP010024 (Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence) position: , mismatch: 6, identity: 0.786

tggacgaccgtttcgtctccgcgaccgg	CRISPR spacer
tggacgaccgtttcgtcagcgcgctgga	Protospacer
*****************  **** . *.

36. spacer 11.1|6578243|31|CP029788|CRISPRCasFinder matches to NZ_CP038257 (Microbacterium sediminis strain YLB-01 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

caccgtcgccgtccgcggtccccgcaccccc	CRISPR spacer
cgccgtcgccggccgcggtgcccgcgtcgca	Protospacer
*.********* ******* *****..* *

37. spacer 1.1|1166454|31|CP029788|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.742

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
gcgggttcgggttgcctgctgccgcgagcgg	Protospacer
* ********** * **********. *

38. spacer 1.1|1166454|31|CP029788|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
cggggttcgggtgggctgtcgccggggtggc	Protospacer
 *****************..**** .  * .

39. spacer 1.1|1166454|31|CP029788|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
cggggttcgggtgggctgtcgccggggtggc	Protospacer
 *****************..**** .  * .

40. spacer 1.1|1166454|31|CP029788|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

gggggttcgggtgggctgctgccgcatggtt	CRISPR spacer
cggggttcgggtgggctgtcgccggggtggc	Protospacer
 *****************..**** .  * .

41. spacer 3.1|2568169|34|CP029788|CRISPRCasFinder matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gtgtgcctgcggcggcctgtgcgggtgggtgggg	CRISPR spacer
gcgggccggcggcggtctgtgcgggtggcgctcg	Protospacer
*.* *** *******.************     *

42. spacer 8.1|5325505|35|CP029788|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.743

tgcgctcttggaggccggtcgggggccggaggccg	CRISPR spacer
cgccgatatggaggccggtcgggtgccggagaccc	Protospacer
.**   . *************** *******.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2049714 : 2058992

Streptomyces_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWT42540.1\|2049714_2050323_-	resolvase	A0A0C4UR34	Shigella_phage	2.1e-19	36.8
AWT42541.1\|2050543_2050822_+	hypothetical protein	NA	NA	NA	NA
AWT42542.1\|2050877_2051093_-	hypothetical protein	NA	NA	NA	NA
AWT42543.1\|2051189_2051927_-	hypothetical protein	NA	NA	NA	NA
AWT42544.1\|2052128_2052488_-	hypothetical protein	NA	NA	NA	NA
AWT42545.1\|2052484_2052928_-	hypothetical protein	Q6VY36	Streptomyces_phage	1.9e-54	66.0
AWT42546.1\|2052928_2053285_-	hypothetical protein	NA	NA	NA	NA
AWT42547.1\|2053307_2054225_-	N-acetylmuramoyl-L-alanine amidase	A0A1J0MBU5	Streptomyces_phage	6.1e-103	58.0
AWT42548.1\|2054282_2054903_-	hypothetical protein	A0A2H5BLW8	Streptomyces_phage	3.5e-54	52.2
AWT42549.1\|2054915_2055641_-	hypothetical protein	NA	NA	NA	NA
AWT47528.1\|2055640_2056738_-	DUF5047 domain-containing protein	Q6VY40	Streptomyces_phage	4.4e-84	50.3
AWT42550.1\|2056748_2058992_-	hypothetical protein	Q6VY41	Streptomyces_phage	6.7e-188	51.0

DBSCAN-SWA_2

2067652 : 2078172

Streptomyces_phage(50.0%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWT42559.1\|2067652_2068606_-\|capsid	phage major capsid protein	V5R986	Arthrobacter_phage	3.8e-39	35.6
AWT42560.1\|2068619_2069207_-	hypothetical protein	NA	NA	NA	NA
AWT42561.1\|2069266_2070040_-	hypothetical protein	A0A2H5BLE7	Streptomyces_phage	4.6e-11	29.3
AWT42562.1\|2070020_2071427_-\|capsid	phage capsid protein	A0A2H4JAT8	uncultured_Caudovirales_phage	3.6e-70	40.3
AWT42563.1\|2071423_2073154_-\|terminase	terminase	K4NXE0	Streptomyces_phage	1.3e-135	48.1
AWT42564.1\|2073143_2073395_-	hypothetical protein	NA	NA	NA	NA
AWT47531.1\|2073396_2073909_-	hypothetical protein	A0A2H5BLH4	Streptomyces_phage	1.7e-30	51.7
AWT47530.1\|2073913_2074504_-	DNA primase	A0A0M4RQA4	Streptomyces_phage	2.3e-34	47.3
AWT42565.1\|2074756_2074960_-	hypothetical protein	NA	NA	NA	NA
AWT42566.1\|2075000_2075237_-	hypothetical protein	A0A0K0N6J6	Gordonia_phage	3.9e-14	52.4
AWT42567.1\|2075243_2075444_-	hypothetical protein	NA	NA	NA	NA
AWT42568.1\|2075446_2075740_-	endonuclease	A0A220NS00	Mycobacterium_phage	6.0e-12	46.5
AWT42569.1\|2075736_2076198_-	hypothetical protein	Q6VY58	Streptomyces_phage	2.2e-21	42.7
AWT42570.1\|2076218_2076443_-	hypothetical protein	NA	NA	NA	NA
AWT42571.1\|2076435_2076978_-	hypothetical protein	NA	NA	NA	NA
AWT42572.1\|2076987_2078172_-	hypothetical protein	Q859A9	Streptomyces_virus	6.6e-09	33.3

DBSCAN-SWA_3

2093243 : 2101905

Gordonia_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWT42598.1\|2093243_2093768_-	hypothetical protein	A0A2H4PF46	Gordonia_phage	2.3e-06	40.4
AWT42599.1\|2093866_2094100_-	hypothetical protein	NA	NA	NA	NA
AWT47534.1\|2094096_2094417_-	hypothetical protein	NA	NA	NA	NA
AWT42600.1\|2094712_2095471_-	hypothetical protein	Q6VY73	Streptomyces_phage	2.8e-37	42.7
AWT42601.1\|2095467_2096556_-	hypothetical protein	A0A0R8VA02	Thermobifida_phage	5.6e-47	42.9
AWT42602.1\|2096641_2097817_-	DNA cytosine methyltransferase	I4AZL4	Saccharomonospora_phage	1.6e-76	47.3
AWT42603.1\|2097887_2098850_-	hypothetical protein	G9FH02	Rhodococcus_phage	1.1e-14	31.1
AWT42604.1\|2098846_2099041_-	hypothetical protein	NA	NA	NA	NA
AWT42605.1\|2099037_2099403_-	hypothetical protein	NA	NA	NA	NA
AWT42606.1\|2099399_2099690_-	hypothetical protein	NA	NA	NA	NA
AWT42607.1\|2099752_2100583_-	hypothetical protein	A0A1B3B1U8	Gordonia_phage	4.5e-89	63.1
AWT42608.1\|2100579_2101905_-	hypothetical protein	A0A0R8VB90	Thermobifida_phage	2.3e-63	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029788

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection