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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP024988 Corynebacterium provencense strain 17KM38 chromosome, complete genome 1 crisprs csa3,cas3,DEDDh,WYL,DinG,cas2,cas1,csb3,csb2gr5,csb1gr7 0 5 0 0

Results visualization

1. CP024988
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024988_1 3003703-3007429 Unclear NA
51 spacers
cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1441754-1441779 4 0.846
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 371512-371537 4 0.846
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1583557-1583582 5 0.808
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 229710-229735 5 0.808
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 NZ_CP010990 Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence 207481-207506 5 0.808
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 NZ_CP012186 Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence 144179-144204 5 0.808
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 NC_017081 Phycisphaera mikurensis NBRC 102666 plasmid pPSMK1, complete sequence 58837-58862 5 0.808
CP024988_1 1.5|3004038|26|CP024988|CRT 3004038-3004063 26 LN997843 Streptomyces reticuli genome assembly TUE45, plasmid : II 90441-90466 5 0.808
CP024988_1 1.10|3004387|34|CP024988|CRT,CRISPRCasFinder 3004387-3004420 34 NZ_CP015586 Roseomonas gilardii strain U14-5 plasmid 2, complete sequence 61200-61233 8 0.765
CP024988_1 1.29|3005762|35|CP024988|CRT,CRISPRCasFinder,PILER-CR 3005762-3005796 35 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4388789-4388823 8 0.771
CP024988_1 1.57|3004402|34|CP024988|PILER-CR 3004402-3004435 34 NZ_CP015586 Roseomonas gilardii strain U14-5 plasmid 2, complete sequence 61200-61233 8 0.765
CP024988_1 1.21|3005183|37|CP024988|CRT,CRISPRCasFinder,PILER-CR 3005183-3005219 37 NZ_CP045329 Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence 173345-173381 10 0.73
CP024988_1 1.21|3005183|37|CP024988|CRT,CRISPRCasFinder,PILER-CR 3005183-3005219 37 NZ_CP045345 Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence 232240-232276 10 0.73
CP024988_1 1.21|3005183|37|CP024988|CRT,CRISPRCasFinder,PILER-CR 3005183-3005219 37 NZ_CP045335 Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence 465109-465145 10 0.73

1. spacer 1.5|3004038|26|CP024988|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 4, identity: 0.846

tacaggccgaggcgggtcatggcggc	CRISPR spacer
agcaggccgaggcgggtcatcgcggt	Protospacer
 .****************** ****.

2. spacer 1.5|3004038|26|CP024988|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 4, identity: 0.846

tacaggccgaggcgggtcatggcggc	CRISPR spacer
agcaggccgaggcgggtcatcgcggt	Protospacer
 .****************** ****.

3. spacer 1.5|3004038|26|CP024988|CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 5, identity: 0.808

tacaggccgaggcgggtcatggcggc	CRISPR spacer
ggcaggcacaggcgggtcatggcggt	Protospacer
 .*****  ****************.

4. spacer 1.5|3004038|26|CP024988|CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 5, identity: 0.808

tacaggccgaggcgggtcatggcggc	CRISPR spacer
ggcaggcacaggcgggtcatggcggt	Protospacer
 .*****  ****************.

5. spacer 1.5|3004038|26|CP024988|CRT matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 5, identity: 0.808

tacaggccgaggcgggtcatggcggc	CRISPR spacer
cacaggccgagccgggtcacggcgtt	Protospacer
.********** *******.**** .

6. spacer 1.5|3004038|26|CP024988|CRT matches to NZ_CP012186 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-1, complete sequence) position: , mismatch: 5, identity: 0.808

tacaggccgaggcgggtcatggcggc	CRISPR spacer
cacaggccgagccgggtcacggcgtt	Protospacer
.********** *******.**** .

7. spacer 1.5|3004038|26|CP024988|CRT matches to NC_017081 (Phycisphaera mikurensis NBRC 102666 plasmid pPSMK1, complete sequence) position: , mismatch: 5, identity: 0.808

tacaggccgaggcgggtcatggcggc	CRISPR spacer
acctcgccgaggcgggtcatggcgac	Protospacer
  *  *******************.*

8. spacer 1.5|3004038|26|CP024988|CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 5, identity: 0.808

tacaggccgaggcgggtcatggcggc	CRISPR spacer
acgaagccgaggcgggtcatggtggc	Protospacer
   *.*****************.***

9. spacer 1.10|3004387|34|CP024988|CRT,CRISPRCasFinder matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

actcatcctggacctgcagtgcgagggcggggtc	CRISPR spacer
cctcatcctggacctgcaggacgagccggagatc	Protospacer
 ****************** .****   *.*.**

10. spacer 1.29|3005762|35|CP024988|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.771

aggtcctccgccgtccgctccccctcatacccgag	CRISPR spacer
cggtcctccggcgtccgcgccccctccagcgcgac	Protospacer
 ********* ******* *******  .* *** 

11. spacer 1.57|3004402|34|CP024988|PILER-CR matches to NZ_CP015586 (Roseomonas gilardii strain U14-5 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.765

actcatcctggacctgcagtgcgagggcggggtc	CRISPR spacer
cctcatcctggacctgcaggacgagccggagatc	Protospacer
 ****************** .****   *.*.**

12. spacer 1.21|3005183|37|CP024988|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP045329 (Labrenzia sp. THAF191b plasmid pTHAF191b_a, complete sequence) position: , mismatch: 10, identity: 0.73

tggcacacatcaccacccggtcctcgaacctctcgta	CRISPR spacer
gcgaaaccatcaccacccggtcctcgaaacgctccag	Protospacer
  * *  ********************* * ***  .

13. spacer 1.21|3005183|37|CP024988|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP045345 (Labrenzia sp. THAF187b plasmid pTHAF187b_a, complete sequence) position: , mismatch: 10, identity: 0.73

tggcacacatcaccacccggtcctcgaacctctcgta	CRISPR spacer
gcgaaaccatcaccacccggtcctcgaaacgctccag	Protospacer
  * *  ********************* * ***  .

14. spacer 1.21|3005183|37|CP024988|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP045335 (Labrenzia sp. THAF191a plasmid pTHAF191a_b, complete sequence) position: , mismatch: 10, identity: 0.73

tggcacacatcaccacccggtcctcgaacctctcgta	CRISPR spacer
gcgaaaccatcaccacccggtcctcgaaacgctccag	Protospacer
  * *  ********************* * ***  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage