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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029015 Candidatus Sulcia muelleri isolate SMKOSYEZ chromosome, complete genome 2 crisprs NA 1 2 0 0

Results visualization

1. CP029015
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029015_1 79386-79477 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029015_2 210520-210785 Orphan NA
5 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP029015_2 2.2|210591|19|CP029015|CRT 210591-210609 19 CP029015.1 52938-52956 2 0.895

1. spacer 2.2|210591|19|CP029015|CRT matches to position: 52938-52956, mismatch: 2, identity: 0.895

aattctaatttagagaaat	CRISPR spacer
aattctcttttagagaaat	Protospacer
******  ***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NZ_CP053658 Bacillus cereus strain CTMA_1571 plasmid p.2, complete sequence 7288-7312 2 0.92
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NC_010282 Bacillus thuringiensis plasmid pFR12.5, complete sequence 1744-1768 2 0.92
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NZ_CP013040 Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence 31000-31024 3 0.88
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NC_019687 Clostridium perfringens plasmid pCpb2-CP1, complete sequence 32434-32458 3 0.88
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 AP014399 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces 26807-26831 3 0.88
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NC_015712 Clostridium perfringens plasmid pCPPB-1, complete sequence 32839-32863 3 0.88
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 AP013383 Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13 38194-38218 3 0.88
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 KU594606 Cyanophage S-RIM32 isolate RW_108_0702, complete genome 83774-83798 3 0.88
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NC_009929 Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence 73716-73740 3 0.88
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 LR214957 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 3 9023-9047 4 0.84
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NC_010371 Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence 95574-95598 4 0.84
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 NZ_LR215006 Mycoplasma conjunctivae strain NCTC10147 plasmid 10 12934-12958 4 0.84
CP029015_2 2.4|210687|28|CP029015|CRT 210687-210714 28 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 156429-156456 4 0.857
CP029015_2 2.4|210687|28|CP029015|CRT 210687-210714 28 NZ_CP045273 Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence 807786-807813 4 0.857
CP029015_2 2.4|210687|28|CP029015|CRT 210687-210714 28 AP022644 Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence 352149-352176 5 0.821
CP029015_2 2.4|210687|28|CP029015|CRT 210687-210714 28 NZ_KX880944 Escherichia coli strain pMCR-1-P3 plasmid pMCR-1-P3, complete sequence 94837-94864 5 0.821
CP029015_2 2.4|210687|28|CP029015|CRT 210687-210714 28 MN693023 Marine virus AFVG_117M30, complete genome 57612-57639 5 0.821
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 KM983334 Clostridium phage phiCTC2B, complete genome 18202-18226 6 0.76
CP029015_2 2.3|210636|25|CP029015|CRT 210636-210660 25 KM983331 Clostridium phage phiCT19406B, complete genome 18202-18226 6 0.76
CP029015_2 2.4|210687|28|CP029015|CRT 210687-210714 28 MN694613 Marine virus AFVG_250M1003, complete genome 36459-36486 6 0.786
CP029015_2 2.4|210687|28|CP029015|CRT 210687-210714 28 NC_048182 Edwardsiella virus pEt-SU, complete genome 198814-198841 6 0.786

1. spacer 2.3|210636|25|CP029015|CRT matches to NZ_CP053658 (Bacillus cereus strain CTMA_1571 plasmid p.2, complete sequence) position: , mismatch: 2, identity: 0.92

ttttctgatttagaattagaaaaat	CRISPR spacer
atttttgatttagaattagaaaaat	Protospacer
 ***.********************

2. spacer 2.3|210636|25|CP029015|CRT matches to NC_010282 (Bacillus thuringiensis plasmid pFR12.5, complete sequence) position: , mismatch: 2, identity: 0.92

ttttctgatttagaattagaaaaat	CRISPR spacer
atttttgatttagaattagaaaaat	Protospacer
 ***.********************

3. spacer 2.3|210636|25|CP029015|CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 3, identity: 0.88

ttttctgatttagaattagaaaaat	CRISPR spacer
tattctgatttaaaattagaaaaag	Protospacer
* **********.*********** 

4. spacer 2.3|210636|25|CP029015|CRT matches to NC_019687 (Clostridium perfringens plasmid pCpb2-CP1, complete sequence) position: , mismatch: 3, identity: 0.88

ttttctgatttagaattagaaaaat	CRISPR spacer
tattctgatttaaaattagaaaaag	Protospacer
* **********.*********** 

5. spacer 2.3|210636|25|CP029015|CRT matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 3, identity: 0.88

ttttctgatttagaattagaaaaat	CRISPR spacer
atttctgatttagaagtagaaatat	Protospacer
 ************** ****** **

6. spacer 2.3|210636|25|CP029015|CRT matches to NC_015712 (Clostridium perfringens plasmid pCPPB-1, complete sequence) position: , mismatch: 3, identity: 0.88

ttttctgatttagaattagaaaaat	CRISPR spacer
ttttctaatttaaaattagaaaaag	Protospacer
******.*****.*********** 

7. spacer 2.3|210636|25|CP029015|CRT matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 3, identity: 0.88

ttttctgatttagaattagaaaaat	CRISPR spacer
atttctgatttagaagtagaaatat	Protospacer
 ************** ****** **

8. spacer 2.3|210636|25|CP029015|CRT matches to KU594606 (Cyanophage S-RIM32 isolate RW_108_0702, complete genome) position: , mismatch: 3, identity: 0.88

ttttctgatttagaattagaaaaat	CRISPR spacer
tcttctgacgtagaattagaaaaat	Protospacer
*.******. ***************

9. spacer 2.3|210636|25|CP029015|CRT matches to NC_009929 (Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence) position: , mismatch: 3, identity: 0.88

ttttctgatttagaattagaaaaat	CRISPR spacer
ttttctgattttaaattagaaaagt	Protospacer
*********** .**********.*

10. spacer 2.3|210636|25|CP029015|CRT matches to LR214957 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 3) position: , mismatch: 4, identity: 0.84

ttttctgatttagaattagaaaaat	CRISPR spacer
ctttctgatttagaactacaaaaag	Protospacer
.**************.** ***** 

11. spacer 2.3|210636|25|CP029015|CRT matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 4, identity: 0.84

ttttctgatttagaattagaaaaat	CRISPR spacer
ttttctgatttagaattaaaagaca	Protospacer
******************.**.*  

12. spacer 2.3|210636|25|CP029015|CRT matches to NZ_LR215006 (Mycoplasma conjunctivae strain NCTC10147 plasmid 10) position: , mismatch: 4, identity: 0.84

ttttctgatttagaattagaaaaat	CRISPR spacer
ctttctgatttagaactacaaaaag	Protospacer
.**************.** ***** 

13. spacer 2.4|210687|28|CP029015|CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 4, identity: 0.857

tattttcattcttttaatttaggtattt	CRISPR spacer
ttctttcattctttttatctaggtattt	Protospacer
* .************ **.*********

14. spacer 2.4|210687|28|CP029015|CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 4, identity: 0.857

tattttcattcttttaatttaggtattt	CRISPR spacer
aattttctttcttttattttaggtatgt	Protospacer
 ****** ******** ********* *

15. spacer 2.4|210687|28|CP029015|CRT matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 5, identity: 0.821

tattttcattcttttaatttaggtattt	CRISPR spacer
cattttcattcttataagttaggtatac	Protospacer
.************ *** ******** .

16. spacer 2.4|210687|28|CP029015|CRT matches to NZ_KX880944 (Escherichia coli strain pMCR-1-P3 plasmid pMCR-1-P3, complete sequence) position: , mismatch: 5, identity: 0.821

tattttcattcttttaatttaggtattt	CRISPR spacer
gattttcattattttaacttaggttatt	Protospacer
 ********* ******.******  **

17. spacer 2.4|210687|28|CP029015|CRT matches to MN693023 (Marine virus AFVG_117M30, complete genome) position: , mismatch: 5, identity: 0.821

-tattttcattcttttaatttaggtattt	CRISPR spacer
gtatttcc-tttttttaatttaggtatag	Protospacer
 *****.* **.***************  

18. spacer 2.3|210636|25|CP029015|CRT matches to KM983334 (Clostridium phage phiCTC2B, complete genome) position: , mismatch: 6, identity: 0.76

ttttctgatttagaattagaaaaat	CRISPR spacer
aacaatgatttagaattagaaaaag	Protospacer
  .  ******************* 

19. spacer 2.3|210636|25|CP029015|CRT matches to KM983331 (Clostridium phage phiCT19406B, complete genome) position: , mismatch: 6, identity: 0.76

ttttctgatttagaattagaaaaat	CRISPR spacer
aacaatgatttagaattagaaaaag	Protospacer
  .  ******************* 

20. spacer 2.4|210687|28|CP029015|CRT matches to MN694613 (Marine virus AFVG_250M1003, complete genome) position: , mismatch: 6, identity: 0.786

tattttcattcttttaatttaggtattt	CRISPR spacer
tattttttttcttttaatttaggaggct	Protospacer
******. *************** . .*

21. spacer 2.4|210687|28|CP029015|CRT matches to NC_048182 (Edwardsiella virus pEt-SU, complete genome) position: , mismatch: 6, identity: 0.786

tattttcattcttttaatttaggtattt	CRISPR spacer
ttcattcattcttttatttttggtattg	Protospacer
* . ************ *** ****** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage