CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029025	Candidatus Sulcia muelleri isolate SMMEIIWA chromosome, complete genome	1 crisprs	NA	4	3	0	0

Cas Category Instructions

Results visualization

1. CP029025

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CRISPR-Cas detection and classification

Crispr_ID: CP029025_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029025_1

237999-238385

Orphan

Consensus_repeat	Method
ATTAAAAATTTTAAATAAATTGAAAAA	CRISPRCasFinder
TAAAAATTTTTAATNAATTGAAAANA	CRT

7 spacers

The CRISPR arrays of CP029025_1

>merge|CP029025|1|237999-238385|CRISPRCasFinder,CRT
ATTAAAAATTTTTAATCAATTGAAAATAAAGGCTAATTTAGAGAAATTAAAAATTTTTAATAAATTGAAAAGAAATTCTAATTTAGAGAAATTAAAAATTTTAAATAAATTGAAAAACTTTTCTTCTTTAGAATTAGAAGAATTATTAAAAATTTTTAATAAATTGAAAAAATATTTTCATTATTTTAATTTAGGGATTTTAAAAAATTTTAATAAATTTAAAAAATGTTCTCAGTTAGAGAGATTCAAAATTTTTAATCAATTGAAAAAAAGTTTTAATTTATCTAATATAAAAGAAACTAAATTAAATTAAAAAAAAATGTCAATTAAAAAAAAAAAACCGATTACTTCAAGTCAAAGATTCAAAATAATAAATTCATTTAAAGA

>CP029025|1|1|237999-238385|CRISPRCasFinder
ATTAAAAATTTTTAATCAATTGAAAAT	AAAGGCTAATTTAGAGAA
ATTAAAAATTTTTAATAAATTGAAAAG	AAATTCTAATTTAGAGAA
ATTAAAAATTTTAAATAAATTGAAAAA	CTTTTCTTCTTTAGAATTAGAAGAATT
ATTAAAAATTTTTAATAAATTGAAAAA	ATATTTTCATTATTTTAA
TTTAGGGATTTTAAAAAATTTTAATAA	ATTTAAAAAATGTTCTCAGTTAGAGAG
ATTCAAAATTTTTAATCAATTGAAAAA	AAGTTTTAATTTATCTAAT
ATAAAAGAAACTAAATTAAATTAAAAA	AAAATGTCAATTAAAAAAAAAAAACCGATTACTTCAAGTCAAAG
ATTCAAAATAATAAATTCATTTAAAGA

>CP029025|1|1|238001-238269|CRT
TAAAAATTTTTAATCAATTGAAAATA	AAGGCTAATTTAGAGAAAT
TAAAAATTTTTAATAAATTGAAAAGA	AATTCTAATTTAGAGAAAT
TAAAAATTTTAAATAAATTGAAAAAC	TTTTCTTCTTTAGAATTAGAAGAATTAT
TAAAAATTTTTAATAAATTGAAAAAA	TATTTTCATTATTTTAATTTAGGGATTT
TAAAAAATTTTAATAAATTTAAAAAA	TGTTCTCAGTTAGAGAGAT
TCAAAATTTTTAATCAATTGAAAAAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029025_1	1.1\|238026\|18\|CP029025\|CRISPRCasFinder	238026-238043	18	CP029025.1	178945-178962	2	0.889
CP029025_1	1.2\|238071\|18\|CP029025\|CRISPRCasFinder	238071-238088	18	CP029025.1	56253-56270	2	0.889
CP029025_1	1.2\|238071\|18\|CP029025\|CRISPRCasFinder	238071-238088	18	CP029025.1	78649-78666	2	0.889
CP029025_1	1.4\|238170\|18\|CP029025\|CRISPRCasFinder	238170-238187	18	CP029025.1	83866-83883	2	0.889
CP029025_1	1.4\|238170\|18\|CP029025\|CRISPRCasFinder	238170-238187	18	CP029025.1	183953-183970	2	0.889
CP029025_1	1.4\|238170\|18\|CP029025\|CRISPRCasFinder	238170-238187	18	CP029025.1	266447-266464	2	0.889
CP029025_1	1.9\|238072\|19\|CP029025\|CRT	238072-238090	19	CP029025.1	56254-56272	2	0.895
CP029025_1	1.9\|238072\|19\|CP029025\|CRT	238072-238090	19	CP029025.1	78650-78668	2	0.895

1. spacer 1.1|238026|18|CP029025|CRISPRCasFinder matches to position: 178945-178962, mismatch: 2, identity: 0.889

aaaggctaatttagagaa	CRISPR spacer
aaaggataatttagaaaa	Protospacer
***** *********.**

2. spacer 1.2|238071|18|CP029025|CRISPRCasFinder matches to position: 56253-56270, mismatch: 2, identity: 0.889

aaattctaatttagagaa	CRISPR spacer
aaattctcttttagagaa	Protospacer
*******  *********

3. spacer 1.2|238071|18|CP029025|CRISPRCasFinder matches to position: 78649-78666, mismatch: 2, identity: 0.889

aaattctaatttagagaa	CRISPR spacer
aaattcaaatttagataa	Protospacer
****** ******** **

4. spacer 1.4|238170|18|CP029025|CRISPRCasFinder matches to position: 83866-83883, mismatch: 2, identity: 0.889

atattttcattattttaa	CRISPR spacer
atattttcctttttttaa	Protospacer
******** ** ******

5. spacer 1.4|238170|18|CP029025|CRISPRCasFinder matches to position: 183953-183970, mismatch: 2, identity: 0.889

atattttcattattttaa	CRISPR spacer
attttttctttattttaa	Protospacer
** ***** *********

6. spacer 1.4|238170|18|CP029025|CRISPRCasFinder matches to position: 266447-266464, mismatch: 2, identity: 0.889

atattttcattattttaa	CRISPR spacer
atattttcaatattataa	Protospacer
********* **** ***

7. spacer 1.9|238072|19|CP029025|CRT matches to position: 56254-56272, mismatch: 2, identity: 0.895

aattctaatttagagaaat	CRISPR spacer
aattctcttttagagaaat	Protospacer
******  ***********

8. spacer 1.9|238072|19|CP029025|CRT matches to position: 78650-78668, mismatch: 2, identity: 0.895

aattctaatttagagaaat	CRISPR spacer
aattcaaatttagataaat	Protospacer
***** ******** ****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029025_1	1.11\|238171\|28\|CP029025\|CRT	238171-238198	28	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	96875-96902	4	0.857
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	MF001355	Proteus phage PM2, partial genome	4825-4851	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	KP890823	Proteus phage vB_PmiM_Pm5461, complete genome	18497-18523	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	KT264824	Gokushovirus WZ-2015a isolate 76Mky15, complete genome	2480-2506	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	6589-6615	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	16274-16300	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	16274-16300	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	NC_013509	Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence	20935-20961	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	MN694510	Marine virus AFVG_250M493, complete genome	27518-27544	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	KY593455	Yersinia phage fHe-Yen9-01, complete genome	112055-112081	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	NC_019909	Yersinia phage phiR1-RT complete genome	110966-110992	5	0.815
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	NC_028820	Yersinia phage vB_YenM_TG1, complete genome	102550-102576	5	0.815
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	MN694510	Marine virus AFVG_250M493, complete genome	27516-27543	5	0.821
CP029025_1	1.11\|238171\|28\|CP029025\|CRT	238171-238198	28	NZ_KX880944	Escherichia coli strain pMCR-1-P3 plasmid pMCR-1-P3, complete sequence	94837-94864	5	0.821
CP029025_1	1.3\|238116\|27\|CP029025\|CRISPRCasFinder	238116-238142	27	NC_022603	Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence	23486-23512	6	0.778
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	MF001355	Proteus phage PM2, partial genome	4826-4853	6	0.786
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	KP890823	Proteus phage vB_PmiM_Pm5461, complete genome	18498-18525	6	0.786
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	KT264824	Gokushovirus WZ-2015a isolate 76Mky15, complete genome	2478-2505	6	0.786
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	72188-72215	6	0.786
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	KY593455	Yersinia phage fHe-Yen9-01, complete genome	112056-112083	6	0.786
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	NC_019909	Yersinia phage phiR1-RT complete genome	110967-110994	6	0.786
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	NC_028820	Yersinia phage vB_YenM_TG1, complete genome	102551-102578	6	0.786
CP029025_1	1.11\|238171\|28\|CP029025\|CRT	238171-238198	28	NZ_CP024873	Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence	80894-80921	6	0.786
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	16272-16299	7	0.75
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	16272-16299	7	0.75
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	6590-6617	7	0.75
CP029025_1	1.10\|238117\|28\|CP029025\|CRT	238117-238144	28	NC_013509	Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence	20936-20963	7	0.75
CP029025_1	1.11\|238171\|28\|CP029025\|CRT	238171-238198	28	NZ_CP028889	Borrelia turcica IST7 plasmid lp35, complete sequence	20750-20777	8	0.714

1. spacer 1.11|238171|28|CP029025|CRT matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 4, identity: 0.857

tattttcattattttaatttagggattt	CRISPR spacer
tatttttattagtttaatttagggatgg	Protospacer
******.**** **************

2. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to MF001355 (Proteus phage PM2, partial genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcatcttctttagaattagaagagtg	Protospacer
 *. ********************.*

3. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to KP890823 (Proteus phage vB_PmiM_Pm5461, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcatcttctttagaattagaagagtg	Protospacer
 *. ********************.*

4. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to KT264824 (Gokushovirus WZ-2015a isolate 76Mky15, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cttttcttctttagaattaaaaacctg	Protospacer
*******************.**.  *

5. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

6. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

7. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

8. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to NC_013509 (Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

9. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to MN694510 (Marine virus AFVG_250M493, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
tatttcttctttagaattaaacgaact	Protospacer
. *****************.* ***.*

10. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to KY593455 (Yersinia phage fHe-Yen9-01, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

11. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

12. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

13. spacer 1.10|238117|28|CP029025|CRT matches to MN694510 (Marine virus AFVG_250M493, complete genome) position: , mismatch: 5, identity: 0.821

ttttcttctttagaattagaagaattat	CRISPR spacer
atttcttctttagaattaaacgaacttt	Protospacer
 *****************.* ***.* *

14. spacer 1.11|238171|28|CP029025|CRT matches to NZ_KX880944 (Escherichia coli strain pMCR-1-P3 plasmid pMCR-1-P3, complete sequence) position: , mismatch: 5, identity: 0.821

tattttcattattttaatttagggattt	CRISPR spacer
gattttcattattttaacttaggttatt	Protospacer
 ****************.*****   **

15. spacer 1.3|238116|27|CP029025|CRISPRCasFinder matches to NC_022603 (Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence) position: , mismatch: 6, identity: 0.778

cttttcttctttagaattagaagaatt	CRISPR spacer
cttttcttctttagaactagattgacc	Protospacer
****************.****  .*..

16. spacer 1.10|238117|28|CP029025|CRT matches to MF001355 (Proteus phage PM2, partial genome) position: , mismatch: 6, identity: 0.786

ttttcttctttagaattagaagaattat	CRISPR spacer
tcatcttctttagaattagaagagtgcc	Protospacer
*. ********************.*  .

17. spacer 1.10|238117|28|CP029025|CRT matches to KP890823 (Proteus phage vB_PmiM_Pm5461, complete genome) position: , mismatch: 6, identity: 0.786

ttttcttctttagaattagaagaattat	CRISPR spacer
tcatcttctttagaattagaagagtgcc	Protospacer
*. ********************.*  .

18. spacer 1.10|238117|28|CP029025|CRT matches to KT264824 (Gokushovirus WZ-2015a isolate 76Mky15, complete genome) position: , mismatch: 6, identity: 0.786

ttttcttctttagaattagaagaattat	CRISPR spacer
ttttcttctttagaattaaaaacctgct	Protospacer
******************.**.  *  *

19. spacer 1.10|238117|28|CP029025|CRT matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 6, identity: 0.786

ttttcttctttagaattagaagaattat	CRISPR spacer
ataccttctgtagtattagaagaattag	Protospacer
 * .***** *** *************

20. spacer 1.10|238117|28|CP029025|CRT matches to KY593455 (Yersinia phage fHe-Yen9-01, complete genome) position: , mismatch: 6, identity: 0.786

ttttcttctttagaattagaagaattat	CRISPR spacer
tcttcttctttagaaccagaagaatgcc	Protospacer
*.*************..********  .

21. spacer 1.10|238117|28|CP029025|CRT matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 6, identity: 0.786

ttttcttctttagaattagaagaattat	CRISPR spacer
tcttcttctttagaaccagaagaatgcc	Protospacer
*.*************..********  .

22. spacer 1.10|238117|28|CP029025|CRT matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 6, identity: 0.786

ttttcttctttagaattagaagaattat	CRISPR spacer
tcttcttctttagaaccagaagaatgcc	Protospacer
*.*************..********  .

23. spacer 1.11|238171|28|CP029025|CRT matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 6, identity: 0.786

tattttcattattttaatttagggattt	CRISPR spacer
tattttcattatttttatttataaatgc	Protospacer
*************** ***** ..** .

24. spacer 1.10|238117|28|CP029025|CRT matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 7, identity: 0.75

ttttcttctttagaattagaagaattat	CRISPR spacer
gtttcttctttagaatcagaaaaacctg	Protospacer
 ***************.****.**..

25. spacer 1.10|238117|28|CP029025|CRT matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 7, identity: 0.75

ttttcttctttagaattagaagaattat	CRISPR spacer
gtttcttctttagaatcagaaaaacctg	Protospacer
 ***************.****.**..

26. spacer 1.10|238117|28|CP029025|CRT matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 7, identity: 0.75

ttttcttctttagaattagaagaattat	CRISPR spacer
gtttcttctttagaatcagaaaaacctg	Protospacer
 ***************.****.**..

27. spacer 1.10|238117|28|CP029025|CRT matches to NC_013509 (Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence) position: , mismatch: 7, identity: 0.75

ttttcttctttagaattagaagaattat	CRISPR spacer
gtttcttctttagaatcagaaaaacctg	Protospacer
 ***************.****.**..

28. spacer 1.11|238171|28|CP029025|CRT matches to NZ_CP028889 (Borrelia turcica IST7 plasmid lp35, complete sequence) position: , mismatch: 8, identity: 0.714

tattttcattattttaatttagggattt	CRISPR spacer
catttttattattttaatttagtagaga	Protospacer
.*****.*************** ..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage