CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029027	Candidatus Sulcia muelleri isolate SMMEIOPA chromosome, complete genome	1 crisprs	NA	3	1	0	0

Cas Category Instructions

Results visualization

1. CP029027

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CRISPR-Cas detection and classification

Crispr_ID: CP029027_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029027_1

237562-237948

Orphan

Consensus_repeat	Method
ATTAAAAATTTTAAATAAATTGAAAAA	CRISPRCasFinder

7 spacers

The CRISPR arrays of CP029027_1

>merge|CP029027|1|237562-237948|CRISPRCasFinder
ATTAAAAATTTTTAATCAATTTAAAATAAAGGCTAATTTAGATAAATTAAAAATTTTTAATAAATTGAAAATAAATTATAATTTAGATAAATTAAAAATTTTAAATAAATTGAAAAACTTTTCTTCTTTAGAATTAGAAGAATTATTAAAAATTTTTAATAAATTGAAAAAATATTTTAATTATTTTAATTTAGGGATTTTAAAAAATTTTAATAAATTTAAAAAATGTTCTCAGTTAGAGAGATTCAAAATTTTTAATCAATTGAAAAAAAGTTTTAATTTATCTAATATAAAAGAAACTAAATTAAATTAAAAAAAAATGTCAATTAAAAAAAAAAAACCGATTACTTCAAGTCAAAGATTCAAAATAATAAATTCATTTAAAGA

>CP029027|1|1|237562-237948|CRISPRCasFinder
ATTAAAAATTTTTAATCAATTTAAAAT	AAAGGCTAATTTAGATAA
ATTAAAAATTTTTAATAAATTGAAAAT	AAATTATAATTTAGATAA
ATTAAAAATTTTAAATAAATTGAAAAA	CTTTTCTTCTTTAGAATTAGAAGAATT
ATTAAAAATTTTTAATAAATTGAAAAA	ATATTTTAATTATTTTAA
TTTAGGGATTTTAAAAAATTTTAATAA	ATTTAAAAAATGTTCTCAGTTAGAGAG
ATTCAAAATTTTTAATCAATTGAAAAA	AAGTTTTAATTTATCTAAT
ATAAAAGAAACTAAATTAAATTAAAAA	AAAATGTCAATTAAAAAAAAAAAACCGATTACTTCAAGTCAAAG
ATTCAAAATAATAAATTCATTTAAAGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	115584-115601	1	0.944
CP029027_1	1.1\|237589\|18\|CP029027\|CRISPRCasFinder	237589-237606	18	CP029027.1	178391-178408	2	0.889
CP029027_1	1.2\|237634\|18\|CP029027\|CRISPRCasFinder	237634-237651	18	CP029027.1	7669-7686	2	0.889
CP029027_1	1.2\|237634\|18\|CP029027\|CRISPRCasFinder	237634-237651	18	CP029027.1	78113-78130	2	0.889
CP029027_1	1.2\|237634\|18\|CP029027\|CRISPRCasFinder	237634-237651	18	CP029027.1	156272-156289	2	0.889
CP029027_1	1.2\|237634\|18\|CP029027\|CRISPRCasFinder	237634-237651	18	CP029027.1	216685-216702	2	0.889
CP029027_1	1.2\|237634\|18\|CP029027\|CRISPRCasFinder	237634-237651	18	CP029027.1	230266-230283	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	11865-11882	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	15196-15213	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	40590-40607	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	76856-76873	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	159198-159215	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	183367-183384	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	188216-188233	2	0.889
CP029027_1	1.4\|237733\|18\|CP029027\|CRISPRCasFinder	237733-237750	18	CP029027.1	216620-216637	2	0.889

1. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 115584-115601, mismatch: 1, identity: 0.944

atattttaattattttaa	CRISPR spacer
atattttatttattttaa	Protospacer
******** *********

2. spacer 1.1|237589|18|CP029027|CRISPRCasFinder matches to position: 178391-178408, mismatch: 2, identity: 0.889

aaaggctaatttagataa	CRISPR spacer
aaaggataatttagaaaa	Protospacer
***** ********* **

3. spacer 1.2|237634|18|CP029027|CRISPRCasFinder matches to position: 7669-7686, mismatch: 2, identity: 0.889

aaattataatttagataa	CRISPR spacer
aatttatgatttagataa	Protospacer
** ****.**********

4. spacer 1.2|237634|18|CP029027|CRISPRCasFinder matches to position: 78113-78130, mismatch: 2, identity: 0.889

aaattataatttagataa	CRISPR spacer
aaattcaaatttagataa	Protospacer
*****  ***********

5. spacer 1.2|237634|18|CP029027|CRISPRCasFinder matches to position: 156272-156289, mismatch: 2, identity: 0.889

aaattataatttagataa	CRISPR spacer
aaattattatttatataa	Protospacer
******* ***** ****

6. spacer 1.2|237634|18|CP029027|CRISPRCasFinder matches to position: 216685-216702, mismatch: 2, identity: 0.889

aaattataatttagataa	CRISPR spacer
aaattataatttaattaa	Protospacer
*************. ***

7. spacer 1.2|237634|18|CP029027|CRISPRCasFinder matches to position: 230266-230283, mismatch: 2, identity: 0.889

aaattataatttagataa	CRISPR spacer
aaattataatgtaaataa	Protospacer
********** **.****

8. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 11865-11882, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atattttagtttttttaa	Protospacer
********.** ******

9. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 15196-15213, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
attttttaaatattttaa	Protospacer
** ****** ********

10. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 40590-40607, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atatttaaattatttaaa	Protospacer
****** ******** **

11. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 76856-76873, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
attttttaataattttaa	Protospacer
** ******* *******

12. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 159198-159215, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atataataattattttaa	Protospacer
****  ************

13. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 183367-183384, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
attttttatttattttaa	Protospacer
** ***** *********

14. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 188216-188233, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
atatattatttattttaa	Protospacer
**** *** *********

15. spacer 1.4|237733|18|CP029027|CRISPRCasFinder matches to position: 216620-216637, mismatch: 2, identity: 0.889

atattttaattattttaa	CRISPR spacer
ataatttaatgattttaa	Protospacer
*** ****** *******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	MF001355	Proteus phage PM2, partial genome	4825-4851	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	KP890823	Proteus phage vB_PmiM_Pm5461, complete genome	18497-18523	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	KT264824	Gokushovirus WZ-2015a isolate 76Mky15, complete genome	2480-2506	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	6589-6615	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	16274-16300	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	16274-16300	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	NC_013509	Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence	20935-20961	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	MN694510	Marine virus AFVG_250M493, complete genome	27518-27544	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	KY593455	Yersinia phage fHe-Yen9-01, complete genome	112055-112081	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	NC_019909	Yersinia phage phiR1-RT complete genome	110966-110992	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	NC_028820	Yersinia phage vB_YenM_TG1, complete genome	102550-102576	5	0.815
CP029027_1	1.3\|237679\|27\|CP029027\|CRISPRCasFinder	237679-237705	27	NC_022603	Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence	23486-23512	6	0.778

1. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to MF001355 (Proteus phage PM2, partial genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcatcttctttagaattagaagagtg	Protospacer
 *. ********************.*

2. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to KP890823 (Proteus phage vB_PmiM_Pm5461, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcatcttctttagaattagaagagtg	Protospacer
 *. ********************.*

3. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to KT264824 (Gokushovirus WZ-2015a isolate 76Mky15, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cttttcttctttagaattaaaaacctg	Protospacer
*******************.**.  *

4. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

5. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

6. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

7. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to NC_013509 (Edwardsiella tarda EIB202 plasmid pEIB202, complete sequence) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
cgtttcttctttagaatcagaaaaacc	Protospacer
* ***************.****.**..

8. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to MN694510 (Marine virus AFVG_250M493, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
tatttcttctttagaattaaacgaact	Protospacer
. *****************.* ***.*

9. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to KY593455 (Yersinia phage fHe-Yen9-01, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

10. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

11. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 5, identity: 0.815

cttttcttctttagaattagaagaatt	CRISPR spacer
atcttcttctttagaaccagaagaatg	Protospacer
 *.*************..********

12. spacer 1.3|237679|27|CP029027|CRISPRCasFinder matches to NC_022603 (Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR64, complete sequence) position: , mismatch: 6, identity: 0.778

cttttcttctttagaattagaagaatt	CRISPR spacer
cttttcttctttagaactagattgacc	Protospacer
****************.****  .*..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage